https://launchpad.net/ubuntu/+source/libncl/2.1.21+git20210811.b1213a7-5/+build/26507358 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-ppc64el-005 5.4.0-156-generic #173-Ubuntu SMP Tue Jul 11 07:25:21 UTC 2023 ppc64le Buildd toolchain package versions: launchpad-buildd_234~642~ubuntu20.04.1 python3-lpbuildd_234~642~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.11 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1.1. Syncing the system clock with the buildd NTP service... 15 Aug 05:10:05 ntpdate[2013]: adjust time server 10.211.37.1 offset 0.008189 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=mantic --arch=ppc64el PACKAGEBUILD-26507358 --image-type chroot /home/buildd/filecache-default/7984b9498478de1d58b749dc057a3cf5e3226d68 Creating target for build PACKAGEBUILD-26507358 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=mantic --arch=ppc64el PACKAGEBUILD-26507358 Starting target for build PACKAGEBUILD-26507358 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=mantic --arch=ppc64el PACKAGEBUILD-26507358 'deb http://ftpmaster.internal/ubuntu mantic main universe' 'deb http://ftpmaster.internal/ubuntu mantic-security main universe' 'deb http://ftpmaster.internal/ubuntu mantic-updates main universe' 'deb http://ftpmaster.internal/ubuntu mantic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-26507358 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=mantic --arch=ppc64el PACKAGEBUILD-26507358 Updating target for build PACKAGEBUILD-26507358 Get:1 http://ftpmaster.internal/ubuntu mantic InRelease [255 kB] Get:2 http://ftpmaster.internal/ubuntu mantic-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu mantic-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu mantic-proposed InRelease [118 kB] Get:5 http://ftpmaster.internal/ubuntu mantic/main ppc64el Packages [1341 kB] Get:6 http://ftpmaster.internal/ubuntu mantic/main Translation-en [512 kB] Get:7 http://ftpmaster.internal/ubuntu mantic/universe ppc64el Packages [15.0 MB] Get:8 http://ftpmaster.internal/ubuntu mantic/universe Translation-en [5971 kB] Get:9 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el Packages [103 kB] Get:10 http://ftpmaster.internal/ubuntu mantic-proposed/main Translation-en [37.1 kB] Get:11 http://ftpmaster.internal/ubuntu mantic-proposed/universe ppc64el Packages [605 kB] Get:12 http://ftpmaster.internal/ubuntu mantic-proposed/universe Translation-en [205 kB] Fetched 24.3 MB in 9s (2723 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: g++-12 libstdc++-12-dev Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: cpp-13 g++-13 gcc-13 gcc-13-base libgcc-13-dev libproc2-0 libsframe1 libstdc++-13-dev systemd-dev The following packages will be upgraded: adduser advancecomp apt base-files bash binutils binutils-common binutils-powerpc64le-linux-gnu bsdutils build-essential ca-certificates coreutils cpp cpp-12 dash debconf debianutils diffutils dpkg dpkg-dev e2fsprogs fakeroot findutils g++ g++-12 gcc gcc-12 gcc-12-base gpg gpg-agent gpgconf gpgv grep hostname init init-system-helpers libacl1 libapparmor1 libapt-pkg6.0 libargon2-1 libasan8 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdb5.3 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libext2fs2 libfakeroot libfdisk1 libgcc-12-dev libgcc-s1 libgcrypt20 libgmp10 libgnutls30 libgomp1 libgssapi-krb5-2 libhogweed6 libidn2-0 libip4tc2 libisl23 libitm1 libk5crypto3 libkmod2 libkrb5-3 libkrb5support0 liblsan0 liblzma5 libmd0 libmount1 libmpfr6 libncurses6 libncursesw6 libnettle8 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libperl5.36 libpng16-16 libquadmath0 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage2 libsepol2 libsmartcols1 libsqlite3-0 libss2 libssl3 libstdc++-12-dev libstdc++6 libsystemd-shared libsystemd0 libtasn1-6 libtinfo6 libtsan2 libubsan1 libudev1 libuuid1 libzstd1 linux-libc-dev logsave lsb-base lto-disabled-list mawk mount ncurses-base ncurses-bin openssl perl perl-base perl-modules-5.36 pkgbinarymangler procps readline-common sed sensible-utils systemd systemd-sysv sysvinit-utils tar tzdata usrmerge util-linux util-linux-extra xz-utils zlib1g 148 upgraded, 9 newly installed, 0 to remove and 0 not upgraded. Need to get 156 MB of archives. After this operation, 166 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu mantic/main ppc64el libcrypt-dev ppc64el 1:4.4.36-2 [144 kB] Get:2 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el libc6-dev ppc64el 2.38-1ubuntu3 [2084 kB] Get:3 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el libc-dev-bin ppc64el 2.38-1ubuntu3 [21.0 kB] Get:4 http://ftpmaster.internal/ubuntu mantic/main ppc64el libcrypt1 ppc64el 1:4.4.36-2 [108 kB] Get:5 http://ftpmaster.internal/ubuntu mantic/main ppc64el linux-libc-dev ppc64el 6.3.0-7.7 [1533 kB] Get:6 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el libc6 ppc64el 2.38-1ubuntu3 [3244 kB] Get:7 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el libc-bin ppc64el 2.38-1ubuntu3 [745 kB] Get:8 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el gcc-13-base ppc64el 13.2.0-2ubuntu1 [42.9 kB] Get:9 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el libgcc-s1 ppc64el 13.2.0-2ubuntu1 [38.5 kB] Get:10 http://ftpmaster.internal/ubuntu mantic/main ppc64el base-files ppc64el 13ubuntu1 [74.2 kB] Get:11 http://ftpmaster.internal/ubuntu mantic/main ppc64el debianutils ppc64el 5.8-1 [104 kB] Get:12 http://ftpmaster.internal/ubuntu mantic/main ppc64el bash ppc64el 5.2.15-2ubuntu1 [956 kB] Get:13 http://ftpmaster.internal/ubuntu mantic/main ppc64el bsdutils ppc64el 1:2.38.1-5ubuntu2 [95.5 kB] Get:14 http://ftpmaster.internal/ubuntu mantic/main ppc64el coreutils ppc64el 9.1-1ubuntu2 [1508 kB] Get:15 http://ftpmaster.internal/ubuntu mantic/main ppc64el liblzma5 ppc64el 5.4.1-0.2 [154 kB] Get:16 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el libstdc++6 ppc64el 13.2.0-2ubuntu1 [871 kB] Get:17 http://ftpmaster.internal/ubuntu mantic/main ppc64el libzstd1 ppc64el 1.5.5+dfsg2-1ubuntu2 [384 kB] Get:18 http://ftpmaster.internal/ubuntu mantic/main ppc64el libgcrypt20 ppc64el 1.10.2-2ubuntu1 [740 kB] Get:19 http://ftpmaster.internal/ubuntu mantic/main ppc64el libacl1 ppc64el 2.3.1-3 [20.4 kB] Get:20 http://ftpmaster.internal/ubuntu mantic/main ppc64el libapparmor1 ppc64el 3.0.8-1ubuntu4 [50.8 kB] Get:21 http://ftpmaster.internal/ubuntu mantic/main ppc64el libaudit-common all 1:3.1.1-1 [5426 B] Get:22 http://ftpmaster.internal/ubuntu mantic/main ppc64el libcap-ng0 ppc64el 0.8.3-1build2 [16.0 kB] Get:23 http://ftpmaster.internal/ubuntu mantic/main ppc64el libaudit1 ppc64el 1:3.1.1-1 [51.6 kB] Get:24 http://ftpmaster.internal/ubuntu mantic/main ppc64el libblkid1 ppc64el 2.38.1-5ubuntu2 [135 kB] Get:25 http://ftpmaster.internal/ubuntu mantic/main ppc64el libcap2 ppc64el 1:2.66-4ubuntu1 [34.4 kB] Get:26 http://ftpmaster.internal/ubuntu mantic/main ppc64el libip4tc2 ppc64el 1.8.9-2ubuntu2 [25.5 kB] Get:27 http://ftpmaster.internal/ubuntu mantic/main ppc64el libperl5.36 ppc64el 5.36.0-7ubuntu1 [4849 kB] Get:28 http://ftpmaster.internal/ubuntu mantic/main ppc64el perl ppc64el 5.36.0-7ubuntu1 [235 kB] Get:29 http://ftpmaster.internal/ubuntu mantic/main ppc64el perl-base ppc64el 5.36.0-7ubuntu1 [1858 kB] Get:30 http://ftpmaster.internal/ubuntu mantic/main ppc64el perl-modules-5.36 all 5.36.0-7ubuntu1 [2984 kB] Get:31 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el libdb5.3 ppc64el 5.3.28+dfsg2-2 [853 kB] Get:32 http://ftpmaster.internal/ubuntu mantic/main ppc64el zlib1g ppc64el 1:1.2.13.dfsg-1ubuntu5 [71.4 kB] Get:33 http://ftpmaster.internal/ubuntu mantic/main ppc64el debconf all 1.5.82 [125 kB] Get:34 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el libssl3 ppc64el 3.0.10-1ubuntu2 [2148 kB] Get:35 http://ftpmaster.internal/ubuntu mantic/main ppc64el libkmod2 ppc64el 30+20230519-1ubuntu2 [62.1 kB] Get:36 http://ftpmaster.internal/ubuntu mantic/main ppc64el libpcre2-8-0 ppc64el 10.42-2 [257 kB] Get:37 http://ftpmaster.internal/ubuntu mantic/main ppc64el libselinux1 ppc64el 3.5-1 [97.2 kB] Get:38 http://ftpmaster.internal/ubuntu mantic/main ppc64el libmount1 ppc64el 2.38.1-5ubuntu2 [145 kB] Get:39 http://ftpmaster.internal/ubuntu mantic/main ppc64el libpam0g ppc64el 1.5.2-6ubuntu1 [73.4 kB] Get:40 http://ftpmaster.internal/ubuntu mantic/main ppc64el libseccomp2 ppc64el 2.5.4-1ubuntu3 [61.6 kB] Get:41 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el systemd-sysv ppc64el 253.5-1ubuntu2 [11.5 kB] Get:42 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el systemd ppc64el 253.5-1ubuntu2 [3283 kB] Get:43 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el libsystemd-shared ppc64el 253.5-1ubuntu2 [2086 kB] Get:44 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el systemd-dev all 253.5-1ubuntu2 [79.0 kB] Get:45 http://ftpmaster.internal/ubuntu mantic/main ppc64el libargon2-1 ppc64el 0~20190702+dfsg-3 [21.8 kB] Get:46 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el libudev1 ppc64el 253.5-1ubuntu2 [183 kB] Get:47 http://ftpmaster.internal/ubuntu mantic/main ppc64el libdevmapper1.02.1 ppc64el 2:1.02.185-2ubuntu1 [179 kB] Get:48 http://ftpmaster.internal/ubuntu mantic/main ppc64el libuuid1 ppc64el 2.38.1-5ubuntu2 [36.4 kB] Get:49 http://ftpmaster.internal/ubuntu mantic/main ppc64el libcryptsetup12 ppc64el 2:2.6.1-4ubuntu1 [343 kB] Get:50 http://ftpmaster.internal/ubuntu mantic/main ppc64el libfdisk1 ppc64el 2.38.1-5ubuntu2 [167 kB] Get:51 http://ftpmaster.internal/ubuntu mantic/main ppc64el libp11-kit0 ppc64el 0.24.1-2ubuntu1 [258 kB] Get:52 http://ftpmaster.internal/ubuntu mantic/main ppc64el mount ppc64el 2.38.1-5ubuntu2 [119 kB] Get:53 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el libsystemd0 ppc64el 253.5-1ubuntu2 [489 kB] Get:54 http://ftpmaster.internal/ubuntu mantic/main ppc64el libapt-pkg6.0 ppc64el 2.7.3 [1007 kB] Get:55 http://ftpmaster.internal/ubuntu mantic/main ppc64el tar ppc64el 1.34+dfsg-1.2ubuntu1 [354 kB] Get:56 http://ftpmaster.internal/ubuntu mantic/main ppc64el dpkg ppc64el 1.21.22ubuntu1 [1469 kB] Get:57 http://ftpmaster.internal/ubuntu mantic/main ppc64el dash ppc64el 0.5.12-6ubuntu1 [107 kB] Get:58 http://ftpmaster.internal/ubuntu mantic/main ppc64el diffutils ppc64el 1:3.8-4 [196 kB] Get:59 http://ftpmaster.internal/ubuntu mantic/main ppc64el findutils ppc64el 4.9.0-5 [328 kB] Get:60 http://ftpmaster.internal/ubuntu mantic/main ppc64el grep ppc64el 3.11-2 [172 kB] Get:61 http://ftpmaster.internal/ubuntu mantic/main ppc64el hostname ppc64el 3.23+nmu1ubuntu1 [11.1 kB] Get:62 http://ftpmaster.internal/ubuntu mantic/main ppc64el libncurses6 ppc64el 6.4+20230625-2 [145 kB] Get:63 http://ftpmaster.internal/ubuntu mantic/main ppc64el libncursesw6 ppc64el 6.4+20230625-2 [182 kB] Get:64 http://ftpmaster.internal/ubuntu mantic/main ppc64el libtinfo6 ppc64el 6.4+20230625-2 [131 kB] Get:65 http://ftpmaster.internal/ubuntu mantic/main ppc64el ncurses-bin ppc64el 6.4+20230625-2 [199 kB] Get:66 http://ftpmaster.internal/ubuntu mantic/main ppc64el sed ppc64el 4.9-1 [208 kB] Get:67 http://ftpmaster.internal/ubuntu mantic/main ppc64el libsmartcols1 ppc64el 2.38.1-5ubuntu2 [71.4 kB] Get:68 http://ftpmaster.internal/ubuntu mantic/main ppc64el util-linux-extra ppc64el 2.38.1-5ubuntu2 [88.9 kB] Get:69 http://ftpmaster.internal/ubuntu mantic/main ppc64el util-linux ppc64el 2.38.1-5ubuntu2 [1140 kB] Get:70 http://ftpmaster.internal/ubuntu mantic/main ppc64el init-system-helpers all 1.65.2ubuntu1 [38.7 kB] Get:71 http://ftpmaster.internal/ubuntu mantic/main ppc64el ncurses-base all 6.4+20230625-2 [24.5 kB] Get:72 http://ftpmaster.internal/ubuntu mantic/main ppc64el sysvinit-utils ppc64el 3.07-1ubuntu1 [34.8 kB] Get:73 http://ftpmaster.internal/ubuntu mantic/main ppc64el lsb-base all 11.6 [4606 B] Get:74 http://ftpmaster.internal/ubuntu mantic/main ppc64el adduser all 3.137ubuntu1 [101 kB] Get:75 http://ftpmaster.internal/ubuntu mantic/main ppc64el gpgv ppc64el 2.2.40-1.1ubuntu1 [174 kB] Get:76 http://ftpmaster.internal/ubuntu mantic/main ppc64el libgmp10 ppc64el 2:6.3.0+dfsg-2ubuntu3 [275 kB] Get:77 http://ftpmaster.internal/ubuntu mantic/main ppc64el libnettle8 ppc64el 3.9.1-2 [222 kB] Get:78 http://ftpmaster.internal/ubuntu mantic/main ppc64el libhogweed6 ppc64el 3.9.1-2 [206 kB] Get:79 http://ftpmaster.internal/ubuntu mantic/main ppc64el libidn2-0 ppc64el 2.3.4-1 [111 kB] Get:80 http://ftpmaster.internal/ubuntu mantic/main ppc64el libtasn1-6 ppc64el 4.19.0-3 [54.9 kB] Get:81 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el libgnutls30 ppc64el 3.8.1-3ubuntu1 [1044 kB] Get:82 http://ftpmaster.internal/ubuntu mantic/main ppc64el apt ppc64el 2.7.3 [1389 kB] Get:83 http://ftpmaster.internal/ubuntu mantic/main ppc64el libpam-modules-bin ppc64el 1.5.2-6ubuntu1 [51.9 kB] Get:84 http://ftpmaster.internal/ubuntu mantic/main ppc64el libpam-modules ppc64el 1.5.2-6ubuntu1 [323 kB] Get:85 http://ftpmaster.internal/ubuntu mantic/main ppc64el logsave ppc64el 1.47.0-2ubuntu1 [22.2 kB] Get:86 http://ftpmaster.internal/ubuntu mantic/main ppc64el libext2fs2 ppc64el 1.47.0-2ubuntu1 [264 kB] Get:87 http://ftpmaster.internal/ubuntu mantic/main ppc64el e2fsprogs ppc64el 1.47.0-2ubuntu1 [656 kB] Get:88 http://ftpmaster.internal/ubuntu mantic/main ppc64el init ppc64el 1.65.2ubuntu1 [5510 B] Get:89 http://ftpmaster.internal/ubuntu mantic/main ppc64el libattr1 ppc64el 1:2.5.1-4 [13.2 kB] Get:90 http://ftpmaster.internal/ubuntu mantic/main ppc64el libdebconfclient0 ppc64el 0.270ubuntu1 [10.9 kB] Get:91 http://ftpmaster.internal/ubuntu mantic/main ppc64el libmd0 ppc64el 1.1.0-1 [30.2 kB] Get:92 http://ftpmaster.internal/ubuntu mantic/main ppc64el libpam-runtime all 1.5.2-6ubuntu1 [41.5 kB] Get:93 http://ftpmaster.internal/ubuntu mantic/main ppc64el libsemanage-common all 3.5-1 [9890 B] Get:94 http://ftpmaster.internal/ubuntu mantic/main ppc64el libsepol2 ppc64el 3.5-1 [383 kB] Get:95 http://ftpmaster.internal/ubuntu mantic/main ppc64el libsemanage2 ppc64el 3.5-1 [113 kB] Get:96 http://ftpmaster.internal/ubuntu mantic/main ppc64el usrmerge all 35ubuntu1 [58.2 kB] Get:97 http://ftpmaster.internal/ubuntu mantic/main ppc64el libcom-err2 ppc64el 1.47.0-2ubuntu1 [22.2 kB] Get:98 http://ftpmaster.internal/ubuntu mantic/main ppc64el libproc2-0 ppc64el 2:4.0.3-1ubuntu1 [62.1 kB] Get:99 http://ftpmaster.internal/ubuntu mantic/main ppc64el libss2 ppc64el 1.47.0-2ubuntu1 [17.5 kB] Get:100 http://ftpmaster.internal/ubuntu mantic/main ppc64el mawk ppc64el 1.3.4.20230730-1 [136 kB] Get:101 http://ftpmaster.internal/ubuntu mantic/main ppc64el procps ppc64el 2:4.0.3-1ubuntu1 [632 kB] Get:102 http://ftpmaster.internal/ubuntu mantic/main ppc64el sensible-utils all 0.0.20 [19.6 kB] Get:103 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el openssl ppc64el 3.0.10-1ubuntu2 [1207 kB] Get:104 http://ftpmaster.internal/ubuntu mantic/main ppc64el ca-certificates all 20230311ubuntu1 [152 kB] Get:105 http://ftpmaster.internal/ubuntu mantic/main ppc64el libgssapi-krb5-2 ppc64el 1.20.1-2 [181 kB] Get:106 http://ftpmaster.internal/ubuntu mantic/main ppc64el libkrb5-3 ppc64el 1.20.1-2 [425 kB] Get:107 http://ftpmaster.internal/ubuntu mantic/main ppc64el libkrb5support0 ppc64el 1.20.1-2 [37.2 kB] Get:108 http://ftpmaster.internal/ubuntu mantic/main ppc64el libk5crypto3 ppc64el 1.20.1-2 [106 kB] Get:109 http://ftpmaster.internal/ubuntu mantic/main ppc64el readline-common all 8.2-1.3 [55.7 kB] Get:110 http://ftpmaster.internal/ubuntu mantic/main ppc64el libreadline8 ppc64el 8.2-1.3 [175 kB] Get:111 http://ftpmaster.internal/ubuntu mantic/main ppc64el libsqlite3-0 ppc64el 3.42.0-1 [761 kB] Get:112 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el tzdata all 2023c-9ubuntu1 [270 kB] Get:113 http://ftpmaster.internal/ubuntu mantic/main ppc64el libpng16-16 ppc64el 1.6.40-1 [237 kB] Get:114 http://ftpmaster.internal/ubuntu mantic/main ppc64el xz-utils ppc64el 5.4.1-0.2 [277 kB] Get:115 http://ftpmaster.internal/ubuntu mantic/main ppc64el advancecomp ppc64el 2.5-1 [235 kB] Get:116 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el libctf0 ppc64el 2.41-4ubuntu1 [111 kB] Get:117 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el libctf-nobfd0 ppc64el 2.41-4ubuntu1 [111 kB] Get:118 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el binutils-powerpc64le-linux-gnu ppc64el 2.41-4ubuntu1 [2498 kB] Get:119 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el libbinutils ppc64el 2.41-4ubuntu1 [693 kB] Get:120 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el binutils ppc64el 2.41-4ubuntu1 [3076 B] Get:121 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el binutils-common ppc64el 2.41-4ubuntu1 [228 kB] Get:122 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el libsframe1 ppc64el 2.41-4ubuntu1 [15.9 kB] Get:123 http://ftpmaster.internal/ubuntu mantic/main ppc64el libisl23 ppc64el 0.26-3 [864 kB] Get:124 http://ftpmaster.internal/ubuntu mantic/main ppc64el libmpfr6 ppc64el 4.2.0-1 [343 kB] Get:125 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el cpp-13 ppc64el 13.2.0-2ubuntu1 [9725 kB] Get:126 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el g++ ppc64el 4:13.2.0-1ubuntu1 [1110 B] Get:127 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el gcc ppc64el 4:13.2.0-1ubuntu1 [5206 B] Get:128 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el cpp ppc64el 4:13.2.0-1ubuntu1 [28.9 kB] Get:129 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el libcc1-0 ppc64el 13.2.0-2ubuntu1 [48.7 kB] Get:130 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el libgomp1 ppc64el 13.2.0-2ubuntu1 [155 kB] Get:131 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el libitm1 ppc64el 13.2.0-2ubuntu1 [32.6 kB] Get:132 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el libatomic1 ppc64el 13.2.0-2ubuntu1 [10.6 kB] Get:133 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el libasan8 ppc64el 13.2.0-2ubuntu1 [2837 kB] Get:134 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el liblsan0 ppc64el 13.2.0-2ubuntu1 [1232 kB] Get:135 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el libubsan1 ppc64el 13.2.0-2ubuntu1 [1133 kB] Get:136 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el libquadmath0 ppc64el 13.2.0-2ubuntu1 [156 kB] Get:137 http://ftpmaster.internal/ubuntu mantic-proposed/universe ppc64el g++-12 ppc64el 12.3.0-7ubuntu2 [11.4 MB] Get:138 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el gcc-12 ppc64el 12.3.0-7ubuntu2 [19.8 MB] Get:139 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el cpp-12 ppc64el 12.3.0-7ubuntu2 [10.1 MB] Get:140 http://ftpmaster.internal/ubuntu mantic-proposed/universe ppc64el libstdc++-12-dev ppc64el 12.3.0-7ubuntu2 [2302 kB] Get:141 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el libgcc-12-dev ppc64el 12.3.0-7ubuntu2 [1512 kB] Get:142 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el libtsan2 ppc64el 13.2.0-2ubuntu1 [2656 kB] Get:143 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el gcc-12-base ppc64el 12.3.0-7ubuntu2 [43.2 kB] Get:144 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el libgcc-13-dev ppc64el 13.2.0-2ubuntu1 [1578 kB] Get:145 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el gcc-13 ppc64el 13.2.0-2ubuntu1 [19.5 MB] Get:146 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el libstdc++-13-dev ppc64el 13.2.0-2ubuntu1 [2471 kB] Get:147 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el g++-13 ppc64el 13.2.0-2ubuntu1 [11.2 MB] Get:148 http://ftpmaster.internal/ubuntu mantic/main ppc64el dpkg-dev all 1.21.22ubuntu1 [1118 kB] Get:149 http://ftpmaster.internal/ubuntu mantic/main ppc64el libdpkg-perl all 1.21.22ubuntu1 [247 kB] Get:150 http://ftpmaster.internal/ubuntu mantic/main ppc64el lto-disabled-list all 42 [12.4 kB] Get:151 http://ftpmaster.internal/ubuntu mantic/main ppc64el build-essential ppc64el 12.10ubuntu1 [4936 B] Get:152 http://ftpmaster.internal/ubuntu mantic/main ppc64el libfakeroot ppc64el 1.32.1-1 [33.9 kB] Get:153 http://ftpmaster.internal/ubuntu mantic/main ppc64el fakeroot ppc64el 1.32.1-1 [62.1 kB] Get:154 http://ftpmaster.internal/ubuntu mantic/main ppc64el gpg ppc64el 2.2.40-1.1ubuntu1 [646 kB] Get:155 http://ftpmaster.internal/ubuntu mantic/main ppc64el gpgconf ppc64el 2.2.40-1.1ubuntu1 [106 kB] Get:156 http://ftpmaster.internal/ubuntu mantic/main ppc64el gpg-agent ppc64el 2.2.40-1.1ubuntu1 [253 kB] Get:157 http://ftpmaster.internal/ubuntu mantic/main ppc64el pkgbinarymangler all 153 [16.3 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 156 MB in 1min 26s (1805 kB/s) (Reading database ... 13031 files and directories currently installed.) Preparing to unpack .../libcrypt-dev_1%3a4.4.36-2_ppc64el.deb ... Unpacking libcrypt-dev:ppc64el (1:4.4.36-2) over (1:4.4.33-1) ... Preparing to unpack .../libc6-dev_2.38-1ubuntu3_ppc64el.deb ... Unpacking libc6-dev:ppc64el (2.38-1ubuntu3) over (2.36-0ubuntu4) ... Replacing files in old package libc6:ppc64el (2.36-0ubuntu4) ... Preparing to unpack .../libc-dev-bin_2.38-1ubuntu3_ppc64el.deb ... Unpacking libc-dev-bin (2.38-1ubuntu3) over (2.36-0ubuntu4) ... Preparing to unpack .../libcrypt1_1%3a4.4.36-2_ppc64el.deb ... Unpacking libcrypt1:ppc64el (1:4.4.36-2) over (1:4.4.33-1) ... Setting up libcrypt1:ppc64el (1:4.4.36-2) ... (Reading database ... 13037 files and directories currently installed.) Preparing to unpack .../linux-libc-dev_6.3.0-7.7_ppc64el.deb ... Unpacking linux-libc-dev:ppc64el (6.3.0-7.7) over (5.19.0-21.21) ... Preparing to unpack .../libc6_2.38-1ubuntu3_ppc64el.deb ... Unpacking libc6:ppc64el (2.38-1ubuntu3) over (2.36-0ubuntu4) ... Setting up libc6:ppc64el (2.38-1ubuntu3) ... (Reading database ... 13041 files and directories currently installed.) Preparing to unpack .../libc-bin_2.38-1ubuntu3_ppc64el.deb ... Unpacking libc-bin (2.38-1ubuntu3) over (2.36-0ubuntu4) ... Setting up libc-bin (2.38-1ubuntu3) ... Selecting previously unselected package gcc-13-base:ppc64el. (Reading database ... 13043 files and directories currently installed.) Preparing to unpack .../gcc-13-base_13.2.0-2ubuntu1_ppc64el.deb ... Unpacking gcc-13-base:ppc64el (13.2.0-2ubuntu1) ... Setting up gcc-13-base:ppc64el (13.2.0-2ubuntu1) ... (Reading database ... 13048 files and directories currently installed.) Preparing to unpack .../libgcc-s1_13.2.0-2ubuntu1_ppc64el.deb ... Unpacking libgcc-s1:ppc64el (13.2.0-2ubuntu1) over (12.2.0-10ubuntu1) ... Setting up libgcc-s1:ppc64el (13.2.0-2ubuntu1) ... (Reading database ... 13048 files and directories currently installed.) Preparing to unpack .../base-files_13ubuntu1_ppc64el.deb ... Unpacking base-files (13ubuntu1) over (12.3ubuntu1) ... Setting up base-files (13ubuntu1) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... 13048 files and directories currently installed.) Preparing to unpack .../debianutils_5.8-1_ppc64el.deb ... Unpacking debianutils (5.8-1) over (5.7-0.4) ... Setting up debianutils (5.8-1) ... (Reading database ... 13048 files and directories currently installed.) Preparing to unpack .../bash_5.2.15-2ubuntu1_ppc64el.deb ... Unpacking bash (5.2.15-2ubuntu1) over (5.2-1ubuntu2) ... Setting up bash (5.2.15-2ubuntu1) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 13048 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.38.1-5ubuntu2_ppc64el.deb ... Unpacking bsdutils (1:2.38.1-5ubuntu2) over (1:2.38.1-4ubuntu1) ... Setting up bsdutils (1:2.38.1-5ubuntu2) ... (Reading database ... 13048 files and directories currently installed.) Preparing to unpack .../coreutils_9.1-1ubuntu2_ppc64el.deb ... Unpacking coreutils (9.1-1ubuntu2) over (8.32-4.1ubuntu1) ... Setting up coreutils (9.1-1ubuntu2) ... (Reading database ... 13048 files and directories currently installed.) Preparing to unpack .../liblzma5_5.4.1-0.2_ppc64el.deb ... Unpacking liblzma5:ppc64el (5.4.1-0.2) over (5.2.9-0.0) ... Setting up liblzma5:ppc64el (5.4.1-0.2) ... (Reading database ... 13048 files and directories currently installed.) Preparing to unpack .../libstdc++6_13.2.0-2ubuntu1_ppc64el.deb ... Unpacking libstdc++6:ppc64el (13.2.0-2ubuntu1) over (12.2.0-10ubuntu1) ... Setting up libstdc++6:ppc64el (13.2.0-2ubuntu1) ... (Reading database ... 13048 files and directories currently installed.) Preparing to unpack .../libzstd1_1.5.5+dfsg2-1ubuntu2_ppc64el.deb ... Unpacking libzstd1:ppc64el (1.5.5+dfsg2-1ubuntu2) over (1.5.2+dfsg-1) ... Setting up libzstd1:ppc64el (1.5.5+dfsg2-1ubuntu2) ... (Reading database ... 13048 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.10.2-2ubuntu1_ppc64el.deb ... Unpacking libgcrypt20:ppc64el (1.10.2-2ubuntu1) over (1.10.1-2ubuntu1) ... Setting up libgcrypt20:ppc64el (1.10.2-2ubuntu1) ... (Reading database ... 13048 files and directories currently installed.) Preparing to unpack .../libacl1_2.3.1-3_ppc64el.deb ... Unpacking libacl1:ppc64el (2.3.1-3) over (2.3.1-2) ... Setting up libacl1:ppc64el (2.3.1-3) ... (Reading database ... 13048 files and directories currently installed.) Preparing to unpack .../libapparmor1_3.0.8-1ubuntu4_ppc64el.deb ... Unpacking libapparmor1:ppc64el (3.0.8-1ubuntu4) over (3.0.8-1ubuntu1) ... Preparing to unpack .../libaudit-common_1%3a3.1.1-1_all.deb ... Unpacking libaudit-common (1:3.1.1-1) over (1:3.0.7-1ubuntu3) ... Setting up libaudit-common (1:3.1.1-1) ... (Reading database ... 13048 files and directories currently installed.) Preparing to unpack .../libcap-ng0_0.8.3-1build2_ppc64el.deb ... Unpacking libcap-ng0:ppc64el (0.8.3-1build2) over (0.8.3-1build1) ... Setting up libcap-ng0:ppc64el (0.8.3-1build2) ... (Reading database ... 13048 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a3.1.1-1_ppc64el.deb ... Unpacking libaudit1:ppc64el (1:3.1.1-1) over (1:3.0.7-1ubuntu3) ... Setting up libaudit1:ppc64el (1:3.1.1-1) ... (Reading database ... 13048 files and directories currently installed.) Preparing to unpack .../libblkid1_2.38.1-5ubuntu2_ppc64el.deb ... Unpacking libblkid1:ppc64el (2.38.1-5ubuntu2) over (2.38.1-4ubuntu1) ... Setting up libblkid1:ppc64el (2.38.1-5ubuntu2) ... (Reading database ... 13048 files and directories currently installed.) Preparing to unpack .../libcap2_1%3a2.66-4ubuntu1_ppc64el.deb ... Unpacking libcap2:ppc64el (1:2.66-4ubuntu1) over (1:2.44-1build3) ... Setting up libcap2:ppc64el (1:2.66-4ubuntu1) ... (Reading database ... 13050 files and directories currently installed.) Preparing to unpack .../libip4tc2_1.8.9-2ubuntu2_ppc64el.deb ... Unpacking libip4tc2:ppc64el (1.8.9-2ubuntu2) over (1.8.7-1ubuntu7) ... Preparing to unpack .../libperl5.36_5.36.0-7ubuntu1_ppc64el.deb ... Unpacking libperl5.36:ppc64el (5.36.0-7ubuntu1) over (5.36.0-4ubuntu2) ... Preparing to unpack .../perl_5.36.0-7ubuntu1_ppc64el.deb ... Unpacking perl (5.36.0-7ubuntu1) over (5.36.0-4ubuntu2) ... Preparing to unpack .../perl-base_5.36.0-7ubuntu1_ppc64el.deb ... Unpacking perl-base (5.36.0-7ubuntu1) over (5.36.0-4ubuntu2) ... Setting up perl-base (5.36.0-7ubuntu1) ... (Reading database ... 13050 files and directories currently installed.) Preparing to unpack .../perl-modules-5.36_5.36.0-7ubuntu1_all.deb ... Unpacking perl-modules-5.36 (5.36.0-7ubuntu1) over (5.36.0-4ubuntu2) ... Preparing to unpack .../libdb5.3_5.3.28+dfsg2-2_ppc64el.deb ... Unpacking libdb5.3:ppc64el (5.3.28+dfsg2-2) over (5.3.28+dfsg1-0.10) ... Setting up libdb5.3:ppc64el (5.3.28+dfsg2-2) ... (Reading database ... 13050 files and directories currently installed.) Preparing to unpack .../zlib1g_1%3a1.2.13.dfsg-1ubuntu5_ppc64el.deb ... Unpacking zlib1g:ppc64el (1:1.2.13.dfsg-1ubuntu5) over (1:1.2.11.dfsg-4.1ubuntu1) ... Setting up zlib1g:ppc64el (1:1.2.13.dfsg-1ubuntu5) ... (Reading database ... 13050 files and directories currently installed.) Preparing to unpack .../debconf_1.5.82_all.deb ... Unpacking debconf (1.5.82) over (1.5.79ubuntu1) ... Setting up debconf (1.5.82) ... (Reading database ... 13050 files and directories currently installed.) Preparing to unpack .../libssl3_3.0.10-1ubuntu2_ppc64el.deb ... Unpacking libssl3:ppc64el (3.0.10-1ubuntu2) over (3.0.5-2ubuntu2) ... Preparing to unpack .../libkmod2_30+20230519-1ubuntu2_ppc64el.deb ... Unpacking libkmod2:ppc64el (30+20230519-1ubuntu2) over (30+20220905-1ubuntu1) ... Preparing to unpack .../libpcre2-8-0_10.42-2_ppc64el.deb ... Unpacking libpcre2-8-0:ppc64el (10.42-2) over (10.40-1ubuntu1) ... Setting up libpcre2-8-0:ppc64el (10.42-2) ... (Reading database ... 13050 files and directories currently installed.) Preparing to unpack .../libselinux1_3.5-1_ppc64el.deb ... Unpacking libselinux1:ppc64el (3.5-1) over (3.4-1build1) ... Setting up libselinux1:ppc64el (3.5-1) ... (Reading database ... 13050 files and directories currently installed.) Preparing to unpack .../libmount1_2.38.1-5ubuntu2_ppc64el.deb ... Unpacking libmount1:ppc64el (2.38.1-5ubuntu2) over (2.38.1-4ubuntu1) ... Setting up libmount1:ppc64el (2.38.1-5ubuntu2) ... (Reading database ... 13050 files and directories currently installed.) Preparing to unpack .../libpam0g_1.5.2-6ubuntu1_ppc64el.deb ... Unpacking libpam0g:ppc64el (1.5.2-6ubuntu1) over (1.5.2-5ubuntu1) ... Setting up libpam0g:ppc64el (1.5.2-6ubuntu1) ... (Reading database ... 13050 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.5.4-1ubuntu3_ppc64el.deb ... Unpacking libseccomp2:ppc64el (2.5.4-1ubuntu3) over (2.5.4-1ubuntu2) ... Setting up libseccomp2:ppc64el (2.5.4-1ubuntu3) ... (Reading database ... 13050 files and directories currently installed.) Preparing to unpack .../systemd-sysv_253.5-1ubuntu2_ppc64el.deb ... Unpacking systemd-sysv (253.5-1ubuntu2) over (251.4-1ubuntu7) ... Setting up libssl3:ppc64el (3.0.10-1ubuntu2) ... (Reading database ... 13051 files and directories currently installed.) Preparing to unpack .../systemd_253.5-1ubuntu2_ppc64el.deb ... Unpacking systemd (253.5-1ubuntu2) over (251.4-1ubuntu7) ... Preparing to unpack .../libsystemd-shared_253.5-1ubuntu2_ppc64el.deb ... Unpacking libsystemd-shared:ppc64el (253.5-1ubuntu2) over (251.4-1ubuntu7) ... Selecting previously unselected package systemd-dev. Preparing to unpack .../systemd-dev_253.5-1ubuntu2_all.deb ... Unpacking systemd-dev (253.5-1ubuntu2) ... Preparing to unpack .../libargon2-1_0~20190702+dfsg-3_ppc64el.deb ... Unpacking libargon2-1:ppc64el (0~20190702+dfsg-3) over (0~20171227-0.3) ... Preparing to unpack .../libudev1_253.5-1ubuntu2_ppc64el.deb ... Unpacking libudev1:ppc64el (253.5-1ubuntu2) over (251.4-1ubuntu7) ... Setting up libudev1:ppc64el (253.5-1ubuntu2) ... (Reading database ... 13085 files and directories currently installed.) Preparing to unpack .../libdevmapper1.02.1_2%3a1.02.185-2ubuntu1_ppc64el.deb ... Unpacking libdevmapper1.02.1:ppc64el (2:1.02.185-2ubuntu1) over (2:1.02.185-1ubuntu1) ... Preparing to unpack .../libuuid1_2.38.1-5ubuntu2_ppc64el.deb ... Unpacking libuuid1:ppc64el (2.38.1-5ubuntu2) over (2.38.1-4ubuntu1) ... Setting up libuuid1:ppc64el (2.38.1-5ubuntu2) ... (Reading database ... 13085 files and directories currently installed.) Preparing to unpack .../libcryptsetup12_2%3a2.6.1-4ubuntu1_ppc64el.deb ... Unpacking libcryptsetup12:ppc64el (2:2.6.1-4ubuntu1) over (2:2.5.0-6ubuntu3) ... Preparing to unpack .../libfdisk1_2.38.1-5ubuntu2_ppc64el.deb ... Unpacking libfdisk1:ppc64el (2.38.1-5ubuntu2) over (2.38.1-4ubuntu1) ... Preparing to unpack .../libp11-kit0_0.24.1-2ubuntu1_ppc64el.deb ... Unpacking libp11-kit0:ppc64el (0.24.1-2ubuntu1) over (0.24.1-1ubuntu2) ... Setting up libp11-kit0:ppc64el (0.24.1-2ubuntu1) ... (Reading database ... 13085 files and directories currently installed.) Preparing to unpack .../mount_2.38.1-5ubuntu2_ppc64el.deb ... Unpacking mount (2.38.1-5ubuntu2) over (2.38.1-4ubuntu1) ... Preparing to unpack .../libsystemd0_253.5-1ubuntu2_ppc64el.deb ... Unpacking libsystemd0:ppc64el (253.5-1ubuntu2) over (251.4-1ubuntu7) ... Setting up libsystemd0:ppc64el (253.5-1ubuntu2) ... (Reading database ... 13086 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0_2.7.3_ppc64el.deb ... Unpacking libapt-pkg6.0:ppc64el (2.7.3) over (2.5.4) ... Setting up libapt-pkg6.0:ppc64el (2.7.3) ... (Reading database ... 13086 files and directories currently installed.) Preparing to unpack .../tar_1.34+dfsg-1.2ubuntu1_ppc64el.deb ... Unpacking tar (1.34+dfsg-1.2ubuntu1) over (1.34+dfsg-1.1) ... Setting up tar (1.34+dfsg-1.2ubuntu1) ... (Reading database ... 13086 files and directories currently installed.) Preparing to unpack .../dpkg_1.21.22ubuntu1_ppc64el.deb ... Unpacking dpkg (1.21.22ubuntu1) over (1.21.11ubuntu2) ... Setting up dpkg (1.21.22ubuntu1) ... (Reading database ... 13089 files and directories currently installed.) Preparing to unpack .../dash_0.5.12-6ubuntu1_ppc64el.deb ... Unpacking dash (0.5.12-6ubuntu1) over (0.5.11+git20210903+057cd650a4ed-9ubuntu1) ... Setting up dash (0.5.12-6ubuntu1) ... Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' (Reading database ... 13087 files and directories currently installed.) Preparing to unpack .../diffutils_1%3a3.8-4_ppc64el.deb ... Unpacking diffutils (1:3.8-4) over (1:3.8-1) ... Setting up diffutils (1:3.8-4) ... (Reading database ... 13087 files and directories currently installed.) Preparing to unpack .../findutils_4.9.0-5_ppc64el.deb ... Unpacking findutils (4.9.0-5) over (4.9.0-3ubuntu1) ... Setting up findutils (4.9.0-5) ... (Reading database ... 13087 files and directories currently installed.) Preparing to unpack .../grep_3.11-2_ppc64el.deb ... Unpacking grep (3.11-2) over (3.8-3) ... Setting up grep (3.11-2) ... (Reading database ... 13087 files and directories currently installed.) Preparing to unpack .../hostname_3.23+nmu1ubuntu1_ppc64el.deb ... Unpacking hostname (3.23+nmu1ubuntu1) over (3.23ubuntu2) ... Setting up hostname (3.23+nmu1ubuntu1) ... (Reading database ... 13087 files and directories currently installed.) Preparing to unpack .../libncurses6_6.4+20230625-2_ppc64el.deb ... Unpacking libncurses6:ppc64el (6.4+20230625-2) over (6.3+20220423-2) ... Preparing to unpack .../libncursesw6_6.4+20230625-2_ppc64el.deb ... Unpacking libncursesw6:ppc64el (6.4+20230625-2) over (6.3+20220423-2) ... Preparing to unpack .../libtinfo6_6.4+20230625-2_ppc64el.deb ... Unpacking libtinfo6:ppc64el (6.4+20230625-2) over (6.3+20220423-2) ... Setting up libtinfo6:ppc64el (6.4+20230625-2) ... (Reading database ... 13087 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.4+20230625-2_ppc64el.deb ... Unpacking ncurses-bin (6.4+20230625-2) over (6.3+20220423-2) ... Setting up ncurses-bin (6.4+20230625-2) ... (Reading database ... 13087 files and directories currently installed.) Preparing to unpack .../archives/sed_4.9-1_ppc64el.deb ... Unpacking sed (4.9-1) over (4.8-1ubuntu2) ... Setting up sed (4.9-1) ... (Reading database ... 13087 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.38.1-5ubuntu2_ppc64el.deb ... Unpacking libsmartcols1:ppc64el (2.38.1-5ubuntu2) over (2.38.1-4ubuntu1) ... Setting up libsmartcols1:ppc64el (2.38.1-5ubuntu2) ... (Reading database ... 13087 files and directories currently installed.) Preparing to unpack .../util-linux-extra_2.38.1-5ubuntu2_ppc64el.deb ... Unpacking util-linux-extra (2.38.1-5ubuntu2) over (2.38.1-4ubuntu1) ... Setting up util-linux-extra (2.38.1-5ubuntu2) ... (Reading database ... 13087 files and directories currently installed.) Preparing to unpack .../util-linux_2.38.1-5ubuntu2_ppc64el.deb ... Unpacking util-linux (2.38.1-5ubuntu2) over (2.38.1-4ubuntu1) ... Setting up util-linux (2.38.1-5ubuntu2) ... (Reading database ... 13087 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.65.2ubuntu1_all.deb ... Unpacking init-system-helpers (1.65.2ubuntu1) over (1.65.2) ... Setting up init-system-helpers (1.65.2ubuntu1) ... (Reading database ... 13087 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.4+20230625-2_all.deb ... Unpacking ncurses-base (6.4+20230625-2) over (6.3+20220423-2) ... Setting up ncurses-base (6.4+20230625-2) ... (Reading database ... 13085 files and directories currently installed.) Preparing to unpack .../archives/lsb-base_11.6_all.deb ... Unpacking lsb-base (11.6) over (11.2ubuntu1) ... Preparing to unpack .../sysvinit-utils_3.07-1ubuntu1_ppc64el.deb ... Unpacking sysvinit-utils (3.07-1ubuntu1) over (3.04-1ubuntu1) ... Setting up sysvinit-utils (3.07-1ubuntu1) ... (Reading database ... 13085 files and directories currently installed.) Preparing to unpack .../adduser_3.137ubuntu1_all.deb ... moving unchanged adduser.conf to adduser.conf.update-old. New dpkg-conffile will come from the package. Unpacking adduser (3.137ubuntu1) over (3.121ubuntu1) ... Setting up adduser (3.137ubuntu1) ... Installing new version of config file /etc/deluser.conf ... (Reading database ... 13049 files and directories currently installed.) Preparing to unpack .../gpgv_2.2.40-1.1ubuntu1_ppc64el.deb ... Unpacking gpgv (2.2.40-1.1ubuntu1) over (2.2.40-1ubuntu1) ... Setting up gpgv (2.2.40-1.1ubuntu1) ... (Reading database ... 13049 files and directories currently installed.) Preparing to unpack .../libgmp10_2%3a6.3.0+dfsg-2ubuntu3_ppc64el.deb ... Unpacking libgmp10:ppc64el (2:6.3.0+dfsg-2ubuntu3) over (2:6.2.1+dfsg1-1.1ubuntu1) ... Setting up libgmp10:ppc64el (2:6.3.0+dfsg-2ubuntu3) ... (Reading database ... 13049 files and directories currently installed.) Preparing to unpack .../libnettle8_3.9.1-2_ppc64el.deb ... Unpacking libnettle8:ppc64el (3.9.1-2) over (3.8.1-2) ... Setting up libnettle8:ppc64el (3.9.1-2) ... (Reading database ... 13049 files and directories currently installed.) Preparing to unpack .../libhogweed6_3.9.1-2_ppc64el.deb ... Unpacking libhogweed6:ppc64el (3.9.1-2) over (3.8.1-2) ... Setting up libhogweed6:ppc64el (3.9.1-2) ... (Reading database ... 13049 files and directories currently installed.) Preparing to unpack .../libidn2-0_2.3.4-1_ppc64el.deb ... Unpacking libidn2-0:ppc64el (2.3.4-1) over (2.3.3-1build1) ... Setting up libidn2-0:ppc64el (2.3.4-1) ... (Reading database ... 13049 files and directories currently installed.) Preparing to unpack .../libtasn1-6_4.19.0-3_ppc64el.deb ... Unpacking libtasn1-6:ppc64el (4.19.0-3) over (4.19.0-2) ... Setting up libtasn1-6:ppc64el (4.19.0-3) ... (Reading database ... 13049 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.8.1-3ubuntu1_ppc64el.deb ... Unpacking libgnutls30:ppc64el (3.8.1-3ubuntu1) over (3.7.7-2ubuntu2) ... Setting up libgnutls30:ppc64el (3.8.1-3ubuntu1) ... (Reading database ... 13049 files and directories currently installed.) Preparing to unpack .../archives/apt_2.7.3_ppc64el.deb ... Unpacking apt (2.7.3) over (2.5.4) ... Setting up apt (2.7.3) ... Installing new version of config file /etc/apt/apt.conf.d/01autoremove ... (Reading database ... 13046 files and directories currently installed.) Preparing to unpack .../libpam-modules-bin_1.5.2-6ubuntu1_ppc64el.deb ... Unpacking libpam-modules-bin (1.5.2-6ubuntu1) over (1.5.2-5ubuntu1) ... Setting up libpam-modules-bin (1.5.2-6ubuntu1) ... (Reading database ... 13046 files and directories currently installed.) Preparing to unpack .../libpam-modules_1.5.2-6ubuntu1_ppc64el.deb ... Unpacking libpam-modules:ppc64el (1.5.2-6ubuntu1) over (1.5.2-5ubuntu1) ... Setting up libpam-modules:ppc64el (1.5.2-6ubuntu1) ... (Reading database ... 13046 files and directories currently installed.) Preparing to unpack .../logsave_1.47.0-2ubuntu1_ppc64el.deb ... Unpacking logsave (1.47.0-2ubuntu1) over (1.46.6~rc1-1ubuntu1) ... Preparing to unpack .../libext2fs2_1.47.0-2ubuntu1_ppc64el.deb ... Unpacking libext2fs2:ppc64el (1.47.0-2ubuntu1) over (1.46.6~rc1-1ubuntu1) ... Setting up libext2fs2:ppc64el (1.47.0-2ubuntu1) ... (Reading database ... 13046 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.47.0-2ubuntu1_ppc64el.deb ... Unpacking e2fsprogs (1.47.0-2ubuntu1) over (1.46.6~rc1-1ubuntu1) ... Setting up libargon2-1:ppc64el (0~20190702+dfsg-3) ... Setting up libdevmapper1.02.1:ppc64el (2:1.02.185-2ubuntu1) ... Setting up libcryptsetup12:ppc64el (2:2.6.1-4ubuntu1) ... Setting up libfdisk1:ppc64el (2.38.1-5ubuntu2) ... Setting up libkmod2:ppc64el (30+20230519-1ubuntu2) ... Setting up libapparmor1:ppc64el (3.0.8-1ubuntu4) ... Setting up libip4tc2:ppc64el (1.8.9-2ubuntu2) ... Setting up libsystemd-shared:ppc64el (253.5-1ubuntu2) ... Setting up systemd-dev (253.5-1ubuntu2) ... Setting up mount (2.38.1-5ubuntu2) ... Setting up systemd (253.5-1ubuntu2) ... Installing new version of config file /etc/systemd/journald.conf ... Installing new version of config file /etc/systemd/logind.conf ... Installing new version of config file /etc/systemd/sleep.conf ... Installing new version of config file /etc/systemd/system.conf ... Installing new version of config file /etc/systemd/user.conf ... Initializing machine ID from random generator. Setting up systemd-sysv (253.5-1ubuntu2) ... (Reading database ... 13046 files and directories currently installed.) Preparing to unpack .../init_1.65.2ubuntu1_ppc64el.deb ... Unpacking init (1.65.2ubuntu1) over (1.65.2) ... Preparing to unpack .../libattr1_1%3a2.5.1-4_ppc64el.deb ... Unpacking libattr1:ppc64el (1:2.5.1-4) over (1:2.5.1-3) ... Setting up libattr1:ppc64el (1:2.5.1-4) ... (Reading database ... 13046 files and directories currently installed.) Preparing to unpack .../libdebconfclient0_0.270ubuntu1_ppc64el.deb ... Unpacking libdebconfclient0:ppc64el (0.270ubuntu1) over (0.264ubuntu1) ... Setting up libdebconfclient0:ppc64el (0.270ubuntu1) ... (Reading database ... 13046 files and directories currently installed.) Preparing to unpack .../libmd0_1.1.0-1_ppc64el.deb ... Unpacking libmd0:ppc64el (1.1.0-1) over (1.0.4-2) ... Setting up libmd0:ppc64el (1.1.0-1) ... (Reading database ... 13046 files and directories currently installed.) Preparing to unpack .../libpam-runtime_1.5.2-6ubuntu1_all.deb ... Unpacking libpam-runtime (1.5.2-6ubuntu1) over (1.5.2-5ubuntu1) ... Setting up libpam-runtime (1.5.2-6ubuntu1) ... (Reading database ... 13046 files and directories currently installed.) Preparing to unpack .../libsemanage-common_3.5-1_all.deb ... Unpacking libsemanage-common (3.5-1) over (3.4-1build1) ... Setting up libsemanage-common (3.5-1) ... (Reading database ... 13046 files and directories currently installed.) Preparing to unpack .../libsepol2_3.5-1_ppc64el.deb ... Unpacking libsepol2:ppc64el (3.5-1) over (3.4-2) ... Setting up libsepol2:ppc64el (3.5-1) ... (Reading database ... 13046 files and directories currently installed.) Preparing to unpack .../libsemanage2_3.5-1_ppc64el.deb ... Unpacking libsemanage2:ppc64el (3.5-1) over (3.4-1build1) ... Setting up libsemanage2:ppc64el (3.5-1) ... (Reading database ... 13046 files and directories currently installed.) Preparing to unpack .../usrmerge_35ubuntu1_all.deb ... Unpacking usrmerge (35ubuntu1) over (33ubuntu1) ... Setting up usrmerge (35ubuntu1) ... (Reading database ... 13046 files and directories currently installed.) Preparing to unpack .../00-libcom-err2_1.47.0-2ubuntu1_ppc64el.deb ... Unpacking libcom-err2:ppc64el (1.47.0-2ubuntu1) over (1.46.6~rc1-1ubuntu1) ... Selecting previously unselected package libproc2-0:ppc64el. Preparing to unpack .../01-libproc2-0_2%3a4.0.3-1ubuntu1_ppc64el.deb ... Unpacking libproc2-0:ppc64el (2:4.0.3-1ubuntu1) ... Preparing to unpack .../02-libss2_1.47.0-2ubuntu1_ppc64el.deb ... Unpacking libss2:ppc64el (1.47.0-2ubuntu1) over (1.46.6~rc1-1ubuntu1) ... Preparing to unpack .../03-mawk_1.3.4.20230730-1_ppc64el.deb ... Unpacking mawk (1.3.4.20230730-1) over (1.3.4.20200120-3.1) ... Preparing to unpack .../04-procps_2%3a4.0.3-1ubuntu1_ppc64el.deb ... Unpacking procps (2:4.0.3-1ubuntu1) over (2:3.3.17-7ubuntu1) ... Preparing to unpack .../05-sensible-utils_0.0.20_all.deb ... Unpacking sensible-utils (0.0.20) over (0.0.17) ... Preparing to unpack .../06-openssl_3.0.10-1ubuntu2_ppc64el.deb ... Unpacking openssl (3.0.10-1ubuntu2) over (3.0.5-2ubuntu2) ... Preparing to unpack .../07-ca-certificates_20230311ubuntu1_all.deb ... Unpacking ca-certificates (20230311ubuntu1) over (20211016ubuntu1) ... Preparing to unpack .../08-libgssapi-krb5-2_1.20.1-2_ppc64el.deb ... Unpacking libgssapi-krb5-2:ppc64el (1.20.1-2) over (1.20.1-1build1) ... Preparing to unpack .../09-libkrb5-3_1.20.1-2_ppc64el.deb ... Unpacking libkrb5-3:ppc64el (1.20.1-2) over (1.20.1-1build1) ... Preparing to unpack .../10-libkrb5support0_1.20.1-2_ppc64el.deb ... Unpacking libkrb5support0:ppc64el (1.20.1-2) over (1.20.1-1build1) ... Preparing to unpack .../11-libk5crypto3_1.20.1-2_ppc64el.deb ... Unpacking libk5crypto3:ppc64el (1.20.1-2) over (1.20.1-1build1) ... Preparing to unpack .../12-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) over (8.2-1.2) ... Preparing to unpack .../13-libreadline8_8.2-1.3_ppc64el.deb ... Unpacking libreadline8:ppc64el (8.2-1.3) over (8.2-1.2) ... Preparing to unpack .../14-libsqlite3-0_3.42.0-1_ppc64el.deb ... Unpacking libsqlite3-0:ppc64el (3.42.0-1) over (3.40.0-1) ... Preparing to unpack .../15-tzdata_2023c-9ubuntu1_all.deb ... Unpacking tzdata (2023c-9ubuntu1) over (2022g-1ubuntu1) ... Preparing to unpack .../16-libpng16-16_1.6.40-1_ppc64el.deb ... Unpacking libpng16-16:ppc64el (1.6.40-1) over (1.6.39-2) ... Preparing to unpack .../17-xz-utils_5.4.1-0.2_ppc64el.deb ... Unpacking xz-utils (5.4.1-0.2) over (5.2.9-0.0) ... Preparing to unpack .../18-advancecomp_2.5-1_ppc64el.deb ... Unpacking advancecomp (2.5-1) over (2.4-1) ... Preparing to unpack .../19-libctf0_2.41-4ubuntu1_ppc64el.deb ... Unpacking libctf0:ppc64el (2.41-4ubuntu1) over (2.39.50.20221224-1ubuntu1) ... Preparing to unpack .../20-libctf-nobfd0_2.41-4ubuntu1_ppc64el.deb ... Unpacking libctf-nobfd0:ppc64el (2.41-4ubuntu1) over (2.39.50.20221224-1ubuntu1) ... Preparing to unpack .../21-binutils-powerpc64le-linux-gnu_2.41-4ubuntu1_ppc64el.deb ... Unpacking binutils-powerpc64le-linux-gnu (2.41-4ubuntu1) over (2.39.50.20221224-1ubuntu1) ... Preparing to unpack .../22-libbinutils_2.41-4ubuntu1_ppc64el.deb ... Unpacking libbinutils:ppc64el (2.41-4ubuntu1) over (2.39.50.20221224-1ubuntu1) ... Preparing to unpack .../23-binutils_2.41-4ubuntu1_ppc64el.deb ... Unpacking binutils (2.41-4ubuntu1) over (2.39.50.20221224-1ubuntu1) ... Preparing to unpack .../24-binutils-common_2.41-4ubuntu1_ppc64el.deb ... Unpacking binutils-common:ppc64el (2.41-4ubuntu1) over (2.39.50.20221224-1ubuntu1) ... Selecting previously unselected package libsframe1:ppc64el. Preparing to unpack .../25-libsframe1_2.41-4ubuntu1_ppc64el.deb ... Unpacking libsframe1:ppc64el (2.41-4ubuntu1) ... Preparing to unpack .../26-libisl23_0.26-3_ppc64el.deb ... Unpacking libisl23:ppc64el (0.26-3) over (0.25-1) ... Preparing to unpack .../27-libmpfr6_4.2.0-1_ppc64el.deb ... Unpacking libmpfr6:ppc64el (4.2.0-1) over (4.1.0-3build3) ... Selecting previously unselected package cpp-13. Preparing to unpack .../28-cpp-13_13.2.0-2ubuntu1_ppc64el.deb ... Unpacking cpp-13 (13.2.0-2ubuntu1) ... Preparing to unpack .../29-g++_4%3a13.2.0-1ubuntu1_ppc64el.deb ... Unpacking g++ (4:13.2.0-1ubuntu1) over (4:12.2.0-1ubuntu1) ... Preparing to unpack .../30-gcc_4%3a13.2.0-1ubuntu1_ppc64el.deb ... Unpacking gcc (4:13.2.0-1ubuntu1) over (4:12.2.0-1ubuntu1) ... Preparing to unpack .../31-cpp_4%3a13.2.0-1ubuntu1_ppc64el.deb ... Unpacking cpp (4:13.2.0-1ubuntu1) over (4:12.2.0-1ubuntu1) ... Preparing to unpack .../32-libcc1-0_13.2.0-2ubuntu1_ppc64el.deb ... Unpacking libcc1-0:ppc64el (13.2.0-2ubuntu1) over (12.2.0-10ubuntu1) ... Preparing to unpack .../33-libgomp1_13.2.0-2ubuntu1_ppc64el.deb ... Unpacking libgomp1:ppc64el (13.2.0-2ubuntu1) over (12.2.0-10ubuntu1) ... Preparing to unpack .../34-libitm1_13.2.0-2ubuntu1_ppc64el.deb ... Unpacking libitm1:ppc64el (13.2.0-2ubuntu1) over (12.2.0-10ubuntu1) ... Preparing to unpack .../35-libatomic1_13.2.0-2ubuntu1_ppc64el.deb ... Unpacking libatomic1:ppc64el (13.2.0-2ubuntu1) over (12.2.0-10ubuntu1) ... Preparing to unpack .../36-libasan8_13.2.0-2ubuntu1_ppc64el.deb ... Unpacking libasan8:ppc64el (13.2.0-2ubuntu1) over (12.2.0-10ubuntu1) ... Preparing to unpack .../37-liblsan0_13.2.0-2ubuntu1_ppc64el.deb ... Unpacking liblsan0:ppc64el (13.2.0-2ubuntu1) over (12.2.0-10ubuntu1) ... Preparing to unpack .../38-libubsan1_13.2.0-2ubuntu1_ppc64el.deb ... Unpacking libubsan1:ppc64el (13.2.0-2ubuntu1) over (12.2.0-10ubuntu1) ... Preparing to unpack .../39-libquadmath0_13.2.0-2ubuntu1_ppc64el.deb ... Unpacking libquadmath0:ppc64el (13.2.0-2ubuntu1) over (12.2.0-10ubuntu1) ... Preparing to unpack .../40-g++-12_12.3.0-7ubuntu2_ppc64el.deb ... Unpacking g++-12 (12.3.0-7ubuntu2) over (12.2.0-10ubuntu1) ... Preparing to unpack .../41-gcc-12_12.3.0-7ubuntu2_ppc64el.deb ... Unpacking gcc-12 (12.3.0-7ubuntu2) over (12.2.0-10ubuntu1) ... Preparing to unpack .../42-cpp-12_12.3.0-7ubuntu2_ppc64el.deb ... Unpacking cpp-12 (12.3.0-7ubuntu2) over (12.2.0-10ubuntu1) ... Preparing to unpack .../43-libstdc++-12-dev_12.3.0-7ubuntu2_ppc64el.deb ... Unpacking libstdc++-12-dev:ppc64el (12.3.0-7ubuntu2) over (12.2.0-10ubuntu1) ... Preparing to unpack .../44-libgcc-12-dev_12.3.0-7ubuntu2_ppc64el.deb ... Unpacking libgcc-12-dev:ppc64el (12.3.0-7ubuntu2) over (12.2.0-10ubuntu1) ... Preparing to unpack .../45-libtsan2_13.2.0-2ubuntu1_ppc64el.deb ... Unpacking libtsan2:ppc64el (13.2.0-2ubuntu1) over (12.2.0-10ubuntu1) ... Preparing to unpack .../46-gcc-12-base_12.3.0-7ubuntu2_ppc64el.deb ... Unpacking gcc-12-base:ppc64el (12.3.0-7ubuntu2) over (12.2.0-10ubuntu1) ... Selecting previously unselected package libgcc-13-dev:ppc64el. Preparing to unpack .../47-libgcc-13-dev_13.2.0-2ubuntu1_ppc64el.deb ... Unpacking libgcc-13-dev:ppc64el (13.2.0-2ubuntu1) ... Selecting previously unselected package gcc-13. Preparing to unpack .../48-gcc-13_13.2.0-2ubuntu1_ppc64el.deb ... Unpacking gcc-13 (13.2.0-2ubuntu1) ... Selecting previously unselected package libstdc++-13-dev:ppc64el. Preparing to unpack .../49-libstdc++-13-dev_13.2.0-2ubuntu1_ppc64el.deb ... Unpacking libstdc++-13-dev:ppc64el (13.2.0-2ubuntu1) ... Selecting previously unselected package g++-13. Preparing to unpack .../50-g++-13_13.2.0-2ubuntu1_ppc64el.deb ... Unpacking g++-13 (13.2.0-2ubuntu1) ... Preparing to unpack .../51-dpkg-dev_1.21.22ubuntu1_all.deb ... Unpacking dpkg-dev (1.21.22ubuntu1) over (1.21.11ubuntu2) ... Preparing to unpack .../52-libdpkg-perl_1.21.22ubuntu1_all.deb ... Unpacking libdpkg-perl (1.21.22ubuntu1) over (1.21.11ubuntu2) ... Preparing to unpack .../53-lto-disabled-list_42_all.deb ... Unpacking lto-disabled-list (42) over (37) ... Preparing to unpack .../54-build-essential_12.10ubuntu1_ppc64el.deb ... Unpacking build-essential (12.10ubuntu1) over (12.9ubuntu3) ... Preparing to unpack .../55-libfakeroot_1.32.1-1_ppc64el.deb ... Unpacking libfakeroot:ppc64el (1.32.1-1) over (1.30.1-1ubuntu1) ... Preparing to unpack .../56-fakeroot_1.32.1-1_ppc64el.deb ... Unpacking fakeroot (1.32.1-1) over (1.30.1-1ubuntu1) ... Preparing to unpack .../57-gpg_2.2.40-1.1ubuntu1_ppc64el.deb ... Unpacking gpg (2.2.40-1.1ubuntu1) over (2.2.40-1ubuntu1) ... Preparing to unpack .../58-gpgconf_2.2.40-1.1ubuntu1_ppc64el.deb ... Unpacking gpgconf (2.2.40-1.1ubuntu1) over (2.2.40-1ubuntu1) ... Preparing to unpack .../59-gpg-agent_2.2.40-1.1ubuntu1_ppc64el.deb ... Unpacking gpg-agent (2.2.40-1.1ubuntu1) over (2.2.40-1ubuntu1) ... Preparing to unpack .../60-pkgbinarymangler_153_all.deb ... Unpacking pkgbinarymangler (153) over (149) ... Setting up lsb-base (11.6) ... Setting up lto-disabled-list (42) ... Setting up init (1.65.2ubuntu1) ... Setting up libsqlite3-0:ppc64el (3.42.0-1) ... Setting up binutils-common:ppc64el (2.41-4ubuntu1) ... Setting up linux-libc-dev:ppc64el (6.3.0-7.7) ... Setting up libctf-nobfd0:ppc64el (2.41-4ubuntu1) ... Setting up libcom-err2:ppc64el (1.47.0-2ubuntu1) ... Setting up libgomp1:ppc64el (13.2.0-2ubuntu1) ... Setting up libsframe1:ppc64el (2.41-4ubuntu1) ... Setting up libfakeroot:ppc64el (1.32.1-1) ... Setting up libkrb5support0:ppc64el (1.20.1-2) ... Setting up gcc-12-base:ppc64el (12.3.0-7ubuntu2) ... Setting up tzdata (2023c-9ubuntu1) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Aug 15 05:12:02 UTC 2023. Universal Time is now: Tue Aug 15 05:12:02 UTC 2023. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up fakeroot (1.32.1-1) ... Setting up perl-modules-5.36 (5.36.0-7ubuntu1) ... Setting up libmpfr6:ppc64el (4.2.0-1) ... Setting up libncurses6:ppc64el (6.4+20230625-2) ... Setting up xz-utils (5.4.1-0.2) ... Setting up libquadmath0:ppc64el (13.2.0-2ubuntu1) ... Setting up libproc2-0:ppc64el (2:4.0.3-1ubuntu1) ... Setting up libpng16-16:ppc64el (1.6.40-1) ... Setting up libatomic1:ppc64el (13.2.0-2ubuntu1) ... Setting up libss2:ppc64el (1.47.0-2ubuntu1) ... Setting up libncursesw6:ppc64el (6.4+20230625-2) ... Setting up libk5crypto3:ppc64el (1.20.1-2) ... Setting up logsave (1.47.0-2ubuntu1) ... Setting up libubsan1:ppc64el (13.2.0-2ubuntu1) ... Setting up advancecomp (2.5-1) ... Setting up sensible-utils (0.0.20) ... Setting up libcrypt-dev:ppc64el (1:4.4.36-2) ... Setting up libasan8:ppc64el (13.2.0-2ubuntu1) ... Setting up procps (2:4.0.3-1ubuntu1) ... Setting up mawk (1.3.4.20230730-1) ... Setting up libkrb5-3:ppc64el (1.20.1-2) ... Setting up libtsan2:ppc64el (13.2.0-2ubuntu1) ... Setting up libbinutils:ppc64el (2.41-4ubuntu1) ... Setting up libisl23:ppc64el (0.26-3) ... Setting up libc-dev-bin (2.38-1ubuntu3) ... Setting up openssl (3.0.10-1ubuntu2) ... Installing new version of config file /etc/ssl/openssl.cnf ... Setting up readline-common (8.2-1.3) ... Setting up libcc1-0:ppc64el (13.2.0-2ubuntu1) ... Setting up libperl5.36:ppc64el (5.36.0-7ubuntu1) ... Setting up liblsan0:ppc64el (13.2.0-2ubuntu1) ... Setting up libitm1:ppc64el (13.2.0-2ubuntu1) ... Setting up libctf0:ppc64el (2.41-4ubuntu1) ... Setting up cpp-12 (12.3.0-7ubuntu2) ... Setting up pkgbinarymangler (153) ... Setting up cpp-13 (13.2.0-2ubuntu1) ... Setting up libreadline8:ppc64el (8.2-1.3) ... Setting up e2fsprogs (1.47.0-2ubuntu1) ... Setting up ca-certificates (20230311ubuntu1) ... Updating certificates in /etc/ssl/certs... rehash: warning: skipping ca-certificates.crt,it does not contain exactly one certificate or CRL 19 added, 6 removed; done. Setting up perl (5.36.0-7ubuntu1) ... Setting up libgcc-12-dev:ppc64el (12.3.0-7ubuntu2) ... Setting up libgssapi-krb5-2:ppc64el (1.20.1-2) ... Setting up libdpkg-perl (1.21.22ubuntu1) ... Setting up libgcc-13-dev:ppc64el (13.2.0-2ubuntu1) ... Setting up cpp (4:13.2.0-1ubuntu1) ... Setting up gpgconf (2.2.40-1.1ubuntu1) ... Setting up libc6-dev:ppc64el (2.38-1ubuntu3) ... Setting up binutils-powerpc64le-linux-gnu (2.41-4ubuntu1) ... Setting up gpg (2.2.40-1.1ubuntu1) ... Setting up libstdc++-13-dev:ppc64el (13.2.0-2ubuntu1) ... Setting up gpg-agent (2.2.40-1.1ubuntu1) ... Setting up libstdc++-12-dev:ppc64el (12.3.0-7ubuntu2) ... Setting up binutils (2.41-4ubuntu1) ... Setting up dpkg-dev (1.21.22ubuntu1) ... Setting up gcc-12 (12.3.0-7ubuntu2) ... Setting up gcc-13 (13.2.0-2ubuntu1) ... Setting up g++-12 (12.3.0-7ubuntu2) ... Setting up g++-13 (13.2.0-2ubuntu1) ... Setting up gcc (4:13.2.0-1ubuntu1) ... Setting up g++ (4:13.2.0-1ubuntu1) ... Setting up build-essential (12.10ubuntu1) ... Processing triggers for libc-bin (2.38-1ubuntu3) ... Processing triggers for debianutils (5.8-1) ... Processing triggers for ca-certificates (20230311ubuntu1) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-26507358 ppc64el mantic-proposed -c chroot:build-PACKAGEBUILD-26507358 --arch=ppc64el --dist=mantic-proposed --nolog libncl_2.1.21+git20210811.b1213a7-5.dsc Initiating build PACKAGEBUILD-26507358 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-156-generic #173-Ubuntu SMP Tue Jul 11 07:25:21 UTC 2023 ppc64le sbuild (Debian sbuild) 0.79.0 (05 February 2020) on bos02-ppc64el-005.buildd +===============================================================================+ | libncl 2.1.21+git20210811.b1213a7-5 (ppc64el) Tue, 15 Aug 2023 05:12:06 +0000 | +===============================================================================+ Package: libncl Version: 2.1.21+git20210811.b1213a7-5 Source Version: 2.1.21+git20210811.b1213a7-5 Distribution: mantic-proposed Machine Architecture: ppc64el Host Architecture: ppc64el Build Architecture: ppc64el Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-26507358/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/libncl-nq0uAc/resolver-XiERXe' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- libncl_2.1.21+git20210811.b1213a7-5.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/libncl-nq0uAc/libncl-2.1.21+git20210811.b1213a7' with '<>' I: NOTICE: Log filtering will replace 'build/libncl-nq0uAc' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), d-shlibs, python3, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), d-shlibs, python3, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [384 B] Get:5 copy:/<>/apt_archive ./ Packages [466 B] Fetched 1807 B in 0s (170 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-12 libstdc++-12-dev Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils d-shlibs debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libdw1 libelf1 libexpat1 libfile-stripnondeterminism-perl libicu72 libmagic-mgc libmagic1 libpipeline1 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libsub-override-perl libtool libuchardet0 libxml2 m4 man-db media-types po-debconf python3 python3-minimal python3.11 python3.11-minimal Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python3.11-venv python3.11-doc binfmt-support Recommended packages: curl | wget | lynx libarchive-cpio-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils d-shlibs debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libdw1 libelf1 libexpat1 libfile-stripnondeterminism-perl libicu72 libmagic-mgc libmagic1 libpipeline1 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libsub-override-perl libtool libuchardet0 libxml2 m4 man-db media-types po-debconf python3 python3-minimal python3.11 python3.11-minimal sbuild-build-depends-main-dummy 0 upgraded, 42 newly installed, 0 to remove and 0 not upgraded. Need to get 25.6 MB of archives. After this operation, 100 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [680 B] Get:2 http://ftpmaster.internal/ubuntu mantic/main ppc64el libpython3.11-minimal ppc64el 3.11.4-1 [838 kB] Get:3 http://ftpmaster.internal/ubuntu mantic/main ppc64el libexpat1 ppc64el 2.5.0-2 [96.2 kB] Get:4 http://ftpmaster.internal/ubuntu mantic/main ppc64el python3.11-minimal ppc64el 3.11.4-1 [2358 kB] Get:5 http://ftpmaster.internal/ubuntu mantic/main ppc64el python3-minimal ppc64el 3.11.4-5 [26.8 kB] Get:6 http://ftpmaster.internal/ubuntu mantic/main ppc64el media-types all 10.1.0 [27.5 kB] Get:7 http://ftpmaster.internal/ubuntu mantic/main ppc64el libpython3.11-stdlib ppc64el 3.11.4-1 [1942 kB] Get:8 http://ftpmaster.internal/ubuntu mantic/main ppc64el python3.11 ppc64el 3.11.4-1 [572 kB] Get:9 http://ftpmaster.internal/ubuntu mantic/main ppc64el libpython3-stdlib ppc64el 3.11.4-5 [9500 B] Get:10 http://ftpmaster.internal/ubuntu mantic/main ppc64el python3 ppc64el 3.11.4-5 [22.9 kB] Get:11 http://ftpmaster.internal/ubuntu mantic/main ppc64el libelf1 ppc64el 0.189-4 [66.3 kB] Get:12 http://ftpmaster.internal/ubuntu mantic/main ppc64el libicu72 ppc64el 72.1-3ubuntu2 [11.1 MB] Get:13 http://ftpmaster.internal/ubuntu mantic/main ppc64el libxml2 ppc64el 2.9.14+dfsg-1.3 [822 kB] Get:14 http://ftpmaster.internal/ubuntu mantic/main ppc64el bsdextrautils ppc64el 2.38.1-5ubuntu2 [76.4 kB] Get:15 http://ftpmaster.internal/ubuntu mantic/main ppc64el libmagic-mgc ppc64el 1:5.44-3 [293 kB] Get:16 http://ftpmaster.internal/ubuntu mantic/main ppc64el libmagic1 ppc64el 1:5.44-3 [104 kB] Get:17 http://ftpmaster.internal/ubuntu mantic/main ppc64el file ppc64el 1:5.44-3 [22.4 kB] Get:18 http://ftpmaster.internal/ubuntu mantic/main ppc64el gettext-base ppc64el 0.21-13 [42.3 kB] Get:19 http://ftpmaster.internal/ubuntu mantic/main ppc64el libuchardet0 ppc64el 0.0.7-1build2 [80.4 kB] Get:20 http://ftpmaster.internal/ubuntu mantic/main ppc64el groff-base ppc64el 1.23.0-2 [1105 kB] Get:21 http://ftpmaster.internal/ubuntu mantic/main ppc64el libpipeline1 ppc64el 1.5.7-1 [25.8 kB] Get:22 http://ftpmaster.internal/ubuntu mantic/main ppc64el man-db ppc64el 2.11.2-3 [1260 kB] Get:23 http://ftpmaster.internal/ubuntu mantic/main ppc64el m4 ppc64el 1.4.19-3 [275 kB] Get:24 http://ftpmaster.internal/ubuntu mantic/main ppc64el autoconf all 2.71-3 [339 kB] Get:25 http://ftpmaster.internal/ubuntu mantic/main ppc64el autotools-dev all 20220109.1 [44.9 kB] Get:26 http://ftpmaster.internal/ubuntu mantic/main ppc64el automake all 1:1.16.5-1.3 [558 kB] Get:27 http://ftpmaster.internal/ubuntu mantic/main ppc64el autopoint all 0.21-13 [422 kB] Get:28 http://ftpmaster.internal/ubuntu mantic/universe ppc64el d-shlibs all 0.104 [10.2 kB] Get:29 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el libdebhelper-perl all 13.11.5ubuntu1 [85.5 kB] Get:30 http://ftpmaster.internal/ubuntu mantic/main ppc64el libtool all 2.4.7-7 [166 kB] Get:31 http://ftpmaster.internal/ubuntu mantic/main ppc64el dh-autoreconf all 20 [16.1 kB] Get:32 http://ftpmaster.internal/ubuntu mantic/main ppc64el libarchive-zip-perl all 1.68-1 [90.2 kB] Get:33 http://ftpmaster.internal/ubuntu mantic/main ppc64el libsub-override-perl all 0.09-4 [8706 B] Get:34 http://ftpmaster.internal/ubuntu mantic/main ppc64el libfile-stripnondeterminism-perl all 1.13.1-1 [18.1 kB] Get:35 http://ftpmaster.internal/ubuntu mantic/main ppc64el dh-strip-nondeterminism all 1.13.1-1 [5362 B] Get:36 http://ftpmaster.internal/ubuntu mantic/main ppc64el libdw1 ppc64el 0.189-4 [292 kB] Get:37 http://ftpmaster.internal/ubuntu mantic/main ppc64el debugedit ppc64el 1:5.0-5 [51.1 kB] Get:38 http://ftpmaster.internal/ubuntu mantic/main ppc64el dwz ppc64el 0.15-1 [139 kB] Get:39 http://ftpmaster.internal/ubuntu mantic/main ppc64el gettext ppc64el 0.21-13 [970 kB] Get:40 http://ftpmaster.internal/ubuntu mantic/main ppc64el intltool-debian all 0.35.0+20060710.6 [23.2 kB] Get:41 http://ftpmaster.internal/ubuntu mantic/main ppc64el po-debconf all 1.0.21+nmu1 [233 kB] Get:42 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el debhelper all 13.11.5ubuntu1 [934 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 25.6 MB in 25s (1039 kB/s) Selecting previously unselected package libpython3.11-minimal:ppc64el. (Reading database ... 13473 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.4-1_ppc64el.deb ... Unpacking libpython3.11-minimal:ppc64el (3.11.4-1) ... Selecting previously unselected package libexpat1:ppc64el. Preparing to unpack .../libexpat1_2.5.0-2_ppc64el.deb ... Unpacking libexpat1:ppc64el (2.5.0-2) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.4-1_ppc64el.deb ... Unpacking python3.11-minimal (3.11.4-1) ... Setting up libpython3.11-minimal:ppc64el (3.11.4-1) ... Setting up libexpat1:ppc64el (2.5.0-2) ... Setting up python3.11-minimal (3.11.4-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 13787 files and directories currently installed.) Preparing to unpack .../python3-minimal_3.11.4-5_ppc64el.deb ... Unpacking python3-minimal (3.11.4-5) ... Selecting previously unselected package media-types. Preparing to unpack .../media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package libpython3.11-stdlib:ppc64el. Preparing to unpack .../libpython3.11-stdlib_3.11.4-1_ppc64el.deb ... Unpacking libpython3.11-stdlib:ppc64el (3.11.4-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../python3.11_3.11.4-1_ppc64el.deb ... Unpacking python3.11 (3.11.4-1) ... Selecting previously unselected package libpython3-stdlib:ppc64el. Preparing to unpack .../libpython3-stdlib_3.11.4-5_ppc64el.deb ... Unpacking libpython3-stdlib:ppc64el (3.11.4-5) ... Setting up python3-minimal (3.11.4-5) ... Selecting previously unselected package python3. (Reading database ... 14195 files and directories currently installed.) Preparing to unpack .../00-python3_3.11.4-5_ppc64el.deb ... Unpacking python3 (3.11.4-5) ... Selecting previously unselected package libelf1:ppc64el. Preparing to unpack .../01-libelf1_0.189-4_ppc64el.deb ... Unpacking libelf1:ppc64el (0.189-4) ... Selecting previously unselected package libicu72:ppc64el. Preparing to unpack .../02-libicu72_72.1-3ubuntu2_ppc64el.deb ... Unpacking libicu72:ppc64el (72.1-3ubuntu2) ... Selecting previously unselected package libxml2:ppc64el. Preparing to unpack .../03-libxml2_2.9.14+dfsg-1.3_ppc64el.deb ... Unpacking libxml2:ppc64el (2.9.14+dfsg-1.3) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../04-bsdextrautils_2.38.1-5ubuntu2_ppc64el.deb ... Unpacking bsdextrautils (2.38.1-5ubuntu2) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../05-libmagic-mgc_1%3a5.44-3_ppc64el.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:ppc64el. Preparing to unpack .../06-libmagic1_1%3a5.44-3_ppc64el.deb ... Unpacking libmagic1:ppc64el (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../07-file_1%3a5.44-3_ppc64el.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../08-gettext-base_0.21-13_ppc64el.deb ... Unpacking gettext-base (0.21-13) ... Selecting previously unselected package libuchardet0:ppc64el. Preparing to unpack .../09-libuchardet0_0.0.7-1build2_ppc64el.deb ... Unpacking libuchardet0:ppc64el (0.0.7-1build2) ... Selecting previously unselected package groff-base. Preparing to unpack .../10-groff-base_1.23.0-2_ppc64el.deb ... Unpacking groff-base (1.23.0-2) ... Selecting previously unselected package libpipeline1:ppc64el. Preparing to unpack .../11-libpipeline1_1.5.7-1_ppc64el.deb ... Unpacking libpipeline1:ppc64el (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../12-man-db_2.11.2-3_ppc64el.deb ... Unpacking man-db (2.11.2-3) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.19-3_ppc64el.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../14-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../15-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../16-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../17-autopoint_0.21-13_all.deb ... Unpacking autopoint (0.21-13) ... Selecting previously unselected package d-shlibs. Preparing to unpack .../18-d-shlibs_0.104_all.deb ... Unpacking d-shlibs (0.104) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../19-libdebhelper-perl_13.11.5ubuntu1_all.deb ... Unpacking libdebhelper-perl (13.11.5ubuntu1) ... Selecting previously unselected package libtool. Preparing to unpack .../20-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../21-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../22-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../23-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../24-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../25-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libdw1:ppc64el. Preparing to unpack .../26-libdw1_0.189-4_ppc64el.deb ... Unpacking libdw1:ppc64el (0.189-4) ... Selecting previously unselected package debugedit. Preparing to unpack .../27-debugedit_1%3a5.0-5_ppc64el.deb ... Unpacking debugedit (1:5.0-5) ... Selecting previously unselected package dwz. Preparing to unpack .../28-dwz_0.15-1_ppc64el.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package gettext. Preparing to unpack .../29-gettext_0.21-13_ppc64el.deb ... Unpacking gettext (0.21-13) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../30-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../31-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../32-debhelper_13.11.5ubuntu1_all.deb ... Unpacking debhelper (13.11.5ubuntu1) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../33-sbuild-build-depends-main-dummy_0.invalid.0_ppc64el.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:ppc64el (1.5.7-1) ... Setting up libicu72:ppc64el (72.1-3ubuntu2) ... Setting up bsdextrautils (2.38.1-5ubuntu2) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libpython3.11-stdlib:ppc64el (3.11.4-1) ... Setting up libdebhelper-perl (13.11.5ubuntu1) ... Setting up libmagic1:ppc64el (1:5.44-3) ... Setting up gettext-base (0.21-13) ... Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.21-13) ... Setting up d-shlibs (0.104) ... Setting up autoconf (2.71-3) ... Setting up libuchardet0:ppc64el (0.0.7-1build2) ... Setting up libsub-override-perl (0.09-4) ... Setting up libelf1:ppc64el (0.189-4) ... Setting up libxml2:ppc64el (2.9.14+dfsg-1.3) ... Setting up libpython3-stdlib:ppc64el (3.11.4-5) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up python3.11 (3.11.4-1) ... Setting up libdw1:ppc64el (0.189-4) ... Setting up gettext (0.21-13) ... Setting up libtool (2.4.7-7) ... Setting up python3 (3.11.4-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-2) ... Setting up debugedit (1:5.0-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.11.2-3) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up debhelper (13.11.5ubuntu1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for systemd (253.5-1ubuntu2) ... Processing triggers for libc-bin (2.38-1ubuntu3) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (ppc64el included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-156-generic #173-Ubuntu SMP Tue Jul 11 07:25:21 UTC 2023 ppc64el (ppc64le) Toolchain package versions: binutils_2.41-4ubuntu1 dpkg-dev_1.21.22ubuntu1 g++-12_12.3.0-7ubuntu2 g++-13_13.2.0-2ubuntu1 gcc-12_12.3.0-7ubuntu2 gcc-13_13.2.0-2ubuntu1 libc6-dev_2.38-1ubuntu3 libstdc++-12-dev_12.3.0-7ubuntu2 libstdc++-13-dev_13.2.0-2ubuntu1 libstdc++6_13.2.0-2ubuntu1 linux-libc-dev_6.3.0-7.7 Package versions: adduser_3.137ubuntu1 advancecomp_2.5-1 apt_2.7.3 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-13 autotools-dev_20220109.1 base-files_13ubuntu1 base-passwd_3.6.1 bash_5.2.15-2ubuntu1 binutils_2.41-4ubuntu1 binutils-common_2.41-4ubuntu1 binutils-powerpc64le-linux-gnu_2.41-4ubuntu1 bsdextrautils_2.38.1-5ubuntu2 bsdutils_1:2.38.1-5ubuntu2 build-essential_12.10ubuntu1 bzip2_1.0.8-5build1 ca-certificates_20230311ubuntu1 coreutils_9.1-1ubuntu2 cpp_4:13.2.0-1ubuntu1 cpp-12_12.3.0-7ubuntu2 cpp-13_13.2.0-2ubuntu1 d-shlibs_0.104 dash_0.5.12-6ubuntu1 debconf_1.5.82 debhelper_13.11.5ubuntu1 debianutils_5.8-1 debugedit_1:5.0-5 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.8-4 dpkg_1.21.22ubuntu1 dpkg-dev_1.21.22ubuntu1 dwz_0.15-1 e2fsprogs_1.47.0-2ubuntu1 fakeroot_1.32.1-1 file_1:5.44-3 findutils_4.9.0-5 g++_4:13.2.0-1ubuntu1 g++-12_12.3.0-7ubuntu2 g++-13_13.2.0-2ubuntu1 gcc_4:13.2.0-1ubuntu1 gcc-12_12.3.0-7ubuntu2 gcc-12-base_12.3.0-7ubuntu2 gcc-13_13.2.0-2ubuntu1 gcc-13-base_13.2.0-2ubuntu1 gettext_0.21-13 gettext-base_0.21-13 gpg_2.2.40-1.1ubuntu1 gpg-agent_2.2.40-1.1ubuntu1 gpgconf_2.2.40-1.1ubuntu1 gpgv_2.2.40-1.1ubuntu1 grep_3.11-2 groff-base_1.23.0-2 gzip_1.12-1ubuntu1 hostname_3.23+nmu1ubuntu1 init_1.65.2ubuntu1 init-system-helpers_1.65.2ubuntu1 intltool-debian_0.35.0+20060710.6 libacl1_2.3.1-3 libapparmor1_3.0.8-1ubuntu4 libapt-pkg6.0_2.7.3 libarchive-zip-perl_1.68-1 libargon2-1_0~20190702+dfsg-3 libasan8_13.2.0-2ubuntu1 libassuan0_2.5.5-5 libatomic1_13.2.0-2ubuntu1 libattr1_1:2.5.1-4 libaudit-common_1:3.1.1-1 libaudit1_1:3.1.1-1 libbinutils_2.41-4ubuntu1 libblkid1_2.38.1-5ubuntu2 libbz2-1.0_1.0.8-5build1 libc-bin_2.38-1ubuntu3 libc-dev-bin_2.38-1ubuntu3 libc6_2.38-1ubuntu3 libc6-dev_2.38-1ubuntu3 libcap-ng0_0.8.3-1build2 libcap2_1:2.66-4ubuntu1 libcc1-0_13.2.0-2ubuntu1 libcom-err2_1.47.0-2ubuntu1 libcrypt-dev_1:4.4.36-2 libcrypt1_1:4.4.36-2 libcryptsetup12_2:2.6.1-4ubuntu1 libctf-nobfd0_2.41-4ubuntu1 libctf0_2.41-4ubuntu1 libdb5.3_5.3.28+dfsg2-2 libdebconfclient0_0.270ubuntu1 libdebhelper-perl_13.11.5ubuntu1 libdevmapper1.02.1_2:1.02.185-2ubuntu1 libdpkg-perl_1.21.22ubuntu1 libdw1_0.189-4 libelf1_0.189-4 libexpat1_2.5.0-2 libext2fs2_1.47.0-2ubuntu1 libfakeroot_1.32.1-1 libfdisk1_2.38.1-5ubuntu2 libffi8_3.4.4-1 libfile-stripnondeterminism-perl_1.13.1-1 libgcc-12-dev_12.3.0-7ubuntu2 libgcc-13-dev_13.2.0-2ubuntu1 libgcc-s1_13.2.0-2ubuntu1 libgcrypt20_1.10.2-2ubuntu1 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgmp10_2:6.3.0+dfsg-2ubuntu3 libgnutls30_3.8.1-3ubuntu1 libgomp1_13.2.0-2ubuntu1 libgpg-error0_1.46-1 libgssapi-krb5-2_1.20.1-2 libhogweed6_3.9.1-2 libicu72_72.1-3ubuntu2 libidn2-0_2.3.4-1 libip4tc2_1.8.9-2ubuntu2 libisl23_0.26-3 libitm1_13.2.0-2ubuntu1 libjansson4_2.14-2 libjson-c5_0.16-2 libk5crypto3_1.20.1-2 libkeyutils1_1.6.3-2 libkmod2_30+20230519-1ubuntu2 libkrb5-3_1.20.1-2 libkrb5support0_1.20.1-2 liblockfile-bin_1.17-1build2 liblockfile1_1.17-1build2 liblsan0_13.2.0-2ubuntu1 liblz4-1_1.9.4-1 liblzma5_5.4.1-0.2 libmagic-mgc_1:5.44-3 libmagic1_1:5.44-3 libmd0_1.1.0-1 libmount1_2.38.1-5ubuntu2 libmpc3_1.3.1-1 libmpfr6_4.2.0-1 libncurses6_6.4+20230625-2 libncursesw6_6.4+20230625-2 libnettle8_3.9.1-2 libnpth0_1.6-3build2 libnsl-dev_1.3.0-2build2 libnsl2_1.3.0-2build2 libp11-kit0_0.24.1-2ubuntu1 libpam-modules_1.5.2-6ubuntu1 libpam-modules-bin_1.5.2-6ubuntu1 libpam-runtime_1.5.2-6ubuntu1 libpam0g_1.5.2-6ubuntu1 libpcre2-8-0_10.42-2 libperl5.36_5.36.0-7ubuntu1 libpipeline1_1.5.7-1 libpng16-16_1.6.40-1 libproc2-0_2:4.0.3-1ubuntu1 libprocps8_2:3.3.17-7ubuntu1 libpython3-stdlib_3.11.4-5 libpython3.11-minimal_3.11.4-1 libpython3.11-stdlib_3.11.4-1 libquadmath0_13.2.0-2ubuntu1 libreadline8_8.2-1.3 libseccomp2_2.5.4-1ubuntu3 libselinux1_3.5-1 libsemanage-common_3.5-1 libsemanage2_3.5-1 libsepol2_3.5-1 libsframe1_2.41-4ubuntu1 libsmartcols1_2.38.1-5ubuntu2 libsqlite3-0_3.42.0-1 libss2_1.47.0-2ubuntu1 libssl3_3.0.10-1ubuntu2 libstdc++-12-dev_12.3.0-7ubuntu2 libstdc++-13-dev_13.2.0-2ubuntu1 libstdc++6_13.2.0-2ubuntu1 libsub-override-perl_0.09-4 libsystemd-shared_253.5-1ubuntu2 libsystemd0_253.5-1ubuntu2 libtasn1-6_4.19.0-3 libtinfo6_6.4+20230625-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-7 libtsan2_13.2.0-2ubuntu1 libubsan1_13.2.0-2ubuntu1 libuchardet0_0.0.7-1build2 libudev1_253.5-1ubuntu2 libunistring2_1.0-2 libuuid1_2.38.1-5ubuntu2 libxml2_2.9.14+dfsg-1.3 libxxhash0_0.8.1-1 libzstd1_1.5.5+dfsg2-1ubuntu2 linux-libc-dev_6.3.0-7.7 lockfile-progs_0.1.19build1 login_1:4.13+dfsg1-1ubuntu1 logsave_1.47.0-2ubuntu1 lsb-base_11.6 lto-disabled-list_42 m4_1.4.19-3 make_4.3-4.1build1 man-db_2.11.2-3 mawk_1.3.4.20230730-1 media-types_10.1.0 mount_2.38.1-5ubuntu2 ncurses-base_6.4+20230625-2 ncurses-bin_6.4+20230625-2 openssl_3.0.10-1ubuntu2 optipng_0.7.7-2build1 passwd_1:4.13+dfsg1-1ubuntu1 patch_2.7.6-7build2 perl_5.36.0-7ubuntu1 perl-base_5.36.0-7ubuntu1 perl-modules-5.36_5.36.0-7ubuntu1 pinentry-curses_1.2.1-1ubuntu1 pkgbinarymangler_153 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3.1 procps_2:4.0.3-1ubuntu1 python3_3.11.4-5 python3-minimal_3.11.4-5 python3.11_3.11.4-1 python3.11-minimal_3.11.4-1 readline-common_8.2-1.3 rpcsvc-proto_1.4.2-0ubuntu6 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.20 systemd_253.5-1ubuntu2 systemd-dev_253.5-1ubuntu2 systemd-sysv_253.5-1ubuntu2 sysvinit-utils_3.07-1ubuntu1 tar_1.34+dfsg-1.2ubuntu1 tzdata_2023c-9ubuntu1 ubuntu-keyring_2021.03.26 usrmerge_35ubuntu1 util-linux_2.38.1-5ubuntu2 util-linux-extra_2.38.1-5ubuntu2 xz-utils_5.4.1-0.2 zlib1g_1:1.2.13.dfsg-1ubuntu5 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libncl Binary: ncl-tools, libncl2, libncl-dev Architecture: any Version: 2.1.21+git20210811.b1213a7-5 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/mtholder/ncl Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/libncl Vcs-Git: https://salsa.debian.org/med-team/libncl.git Testsuite: autopkgtest Testsuite-Triggers: build-essential Build-Depends: debhelper-compat (= 13), d-shlibs, python3 Package-List: libncl-dev deb libdevel optional arch=any libncl2 deb libs optional arch=any ncl-tools deb science optional arch=any Checksums-Sha1: 2cf4fdf16c8ea4fd7f252aaf1c28d0b1458cb287 544032 libncl_2.1.21+git20210811.b1213a7.orig.tar.xz b80b64913b222b0503db286746721a2c0f3c7797 19756 libncl_2.1.21+git20210811.b1213a7-5.debian.tar.xz Checksums-Sha256: 921db455387828e1e135febd177f7f1c69f4c204d5cadc0d0f47502f6fa608ed 544032 libncl_2.1.21+git20210811.b1213a7.orig.tar.xz caac9d802c4681fa4e7116cb7ee8dde9330aed5df6e31d8134567b3b53b73427 19756 libncl_2.1.21+git20210811.b1213a7-5.debian.tar.xz Files: a3af41d99fe04586c1f61bc942c5614b 544032 libncl_2.1.21+git20210811.b1213a7.orig.tar.xz c958be428c40ec5b3083532f7cedb5f5 19756 libncl_2.1.21+git20210811.b1213a7-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmTaLpgACgkQPCZ2P2xn 5uKTDw//RnDHYOu745v/Ou6HUTltcSF7rRdEmrjUTDmBaes8LmPb6ltakNTWb/2d /Xu89pncPsJlxLU0LJS+y/VklHz/8xd+hTiM87s9xgUVSTVEgbqWAKLWq2hfNsI8 SZ7vC14Vrx2R3Cb7P97ya0jbh7hHDxm+INSaidOvxQBdLafi1YILYMPOrzIRfegI IdprrQ7Khvv5oe2pEYNcawmtqY6dXHfqeBlAQbwvWLLpf1JMWX1vHm+oSjsexet3 auMP/+nWCQM7iZHMA4iIkSCJwrLJxj2EOlgUCES7Kq/C8yeyWFOz75KtVGlQU9YN VyO5bRQXi+TcmKPFGfwp9ORLPUHGsZtDAZrXx7Ae+8ROhLf5xiwPTAbNyqcwUI76 prLLsHEz1fKM2qj4JrJOR+MHBmEBraWu8KpzLgdyzO/S+ycLC7ZBCXdscBiEJ9oP C15O0UltAh4bjRkzeB/boidVKQid1eKbpHkkNJnVKyH7acz5o3TRhuZ+0Of8igcI 2ayPm4F3et730hD+yZZO3jZkZYRi92FkPuA9oYzT3ILc2CAgDmgDkPP5JYf29brq IxntCZtbIeGQ/fgITsMVKtP6h8tYRck0lOb1rQpvUnfiJFliHES1dbTgzPuFhqvG DcF2bDMQJ+kl7vbHZJdxRJ/Va/t28ka1atQiQgAPhgXtFMa8RJ0= =eS2s -----END PGP SIGNATURE----- gpgv: Signature made Mon Aug 14 13:39:36 2023 UTC gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libncl_2.1.21+git20210811.b1213a7-5.dsc: no acceptable signature found dpkg-source: info: extracting libncl in /<> dpkg-source: info: unpacking libncl_2.1.21+git20210811.b1213a7.orig.tar.xz dpkg-source: info: unpacking libncl_2.1.21+git20210811.b1213a7-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_rpath_issue.patch dpkg-source: info: applying set_soname_version.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying 2to3.patch dpkg-source: info: applying python3.11.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-26507358 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-26507358 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-26507358 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package libncl dpkg-buildpackage: info: source version 2.1.21+git20210811.b1213a7-5 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture ppc64el debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/<>' dh_clean find . -name ".roundTripNCL*" -delete make[1]: Leaving directory '/<>' debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'config'. libtoolize: copying file 'config/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'config'. libtoolize: copying file 'config/libtool.m4' libtoolize: copying file 'config/ltoptions.m4' libtoolize: copying file 'config/ltsugar.m4' libtoolize: copying file 'config/ltversion.m4' libtoolize: copying file 'config/lt~obsolete.m4' configure.ac:28: warning: The macro `AC_PROG_LIBTOOL' is obsolete. configure.ac:28: You should run autoupdate. config/libtool.m4:100: AC_PROG_LIBTOOL is expanded from... configure.ac:28: the top level configure.ac:42: warning: The macro `AC_HELP_STRING' is obsolete. configure.ac:42: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... config/ax_cxx_flags.m4:5: AX_CXXFLAGS is expanded from... configure.ac:42: the top level configure.ac:124: warning: The macro `AC_HEADER_STDC' is obsolete. configure.ac:124: You should run autoupdate. ./lib/autoconf/headers.m4:704: AC_HEADER_STDC is expanded from... configure.ac:124: the top level configure.ac:155: warning: The macro `AC_HELP_STRING' is obsolete. configure.ac:155: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... configure.ac:155: the top level configure.ac:167: warning: The macro `AC_HELP_STRING' is obsolete. configure.ac:167: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... configure.ac:167: the top level configure.ac:28: installing 'config/compile' configure.ac:21: installing 'config/missing' example/basiccmdline/Makefile.am: installing 'config/depcomp' debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- --with-constfuncs=yes ./configure --build=powerpc64le-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/powerpc64le-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --with-constfuncs=yes checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether UID '2001' is supported by ustar format... yes checking whether GID '2501' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar checking whether ln -s works... yes checking build system type... powerpc64le-unknown-linux-gnu checking host system type... powerpc64le-unknown-linux-gnu checking how to print strings... printf checking whether make supports the include directive... yes (GNU style) checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking how to convert powerpc64le-unknown-linux-gnu file names to powerpc64le-unknown-linux-gnu format... func_convert_file_noop checking how to convert powerpc64le-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for file... file checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... none checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether C++ compiler works... yes checking for egrep... (cached) /usr/bin/grep -E checking for float.h... yes checking for stdlib.h... (cached) yes checking for _Bool... no checking for stdbool.h that conforms to C99... yes checking for an ANSI C-conforming const... yes checking for inline... inline checking whether struct tm is in sys/time.h or time.h... time.h checking for sys/time.h... yes checking for alarm... yes checking for working mktime... yes checking for working strtod... yes checking for memmove... yes checking for strchr... yes checking for strtol... yes checking for python3... /usr/bin/python3 checking python3 module: subprocess... yes checking whether make sets $(MAKE)... (cached) yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating example/Makefile config.status: creating example/basiccmdline/Makefile config.status: creating example/check-taxo-nodes/Makefile config.status: creating example/compressor/Makefile config.status: creating example/find-unsupported-edges/Makefile config.status: creating example/gapcode/Makefile config.status: creating example/ot-subtree/Makefile config.status: creating example/ot-tree-inspect/Makefile config.status: creating example/nclsimplest/Makefile config.status: creating example/ncltest/Makefile config.status: creating example/normalizer/Makefile config.status: creating example/patristic/Makefile config.status: creating example/phylobaseinterface/Makefile config.status: creating example/polytomy-count/Makefile config.status: creating example/outdeg1count/Makefile config.status: creating example/splitsinfile/Makefile config.status: creating example/subsetter/Makefile config.status: creating example/translate/Makefile config.status: creating ncl/Makefile config.status: creating test/Makefile config.status: creating nclv2.1.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands make[1]: Leaving directory '/<>' dh_auto_build -a make -j4 make[1]: Entering directory '/<>' make all-recursive make[2]: Entering directory '/<>' Making all in ncl make[3]: Entering directory '/<>/ncl' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c -o nxsassumptionsblock.lo nxsassumptionsblock.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c -o nxsblock.lo nxsblock.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c -o nxscharactersblock.lo nxscharactersblock.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c -o nxscxxdiscretematrix.lo nxscxxdiscretematrix.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c nxsblock.cpp -fPIC -DPIC -o .libs/nxsblock.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c nxsassumptionsblock.cpp -fPIC -DPIC -o .libs/nxsassumptionsblock.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c nxscharactersblock.cpp -fPIC -DPIC -o .libs/nxscharactersblock.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c nxscxxdiscretematrix.cpp -fPIC -DPIC -o .libs/nxscxxdiscretematrix.o In file included from ../ncl/nxsexception.h:23, from ../ncl/nxsblock.h:24, from nxsblock.cpp:21: ../ncl/nxsstring.h:266:17: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from ../ncl/nxsdefs.h:22, from nxsblock.cpp:20: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../ncl/nxsexception.h:23, from ../ncl/nxsblock.h:24, from ../ncl/nxstaxablock.h:23, from ../ncl/nxscharactersblock.h:29, from ../ncl/nxscxxdiscretematrix.h:28, from nxscxxdiscretematrix.cpp:20: ../ncl/nxsstring.h:266:17: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/streambuf:43, from /usr/include/c++/13/bits/streambuf_iterator.h:35, from /usr/include/c++/13/iterator:66, from nxscxxdiscretematrix.cpp:19: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../ncl/nxsexception.h:23, from ../ncl/nxsblock.h:24, from ../ncl/nxstaxablock.h:23, from ../ncl/nxscharactersblock.h:29, from nxscharactersblock.cpp:26: ../ncl/nxsstring.h:266:17: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/iomanip:42, from nxscharactersblock.cpp:23: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../ncl/nxsexception.h:23, from ../ncl/nxsblock.h:24, from ../ncl/nxsassumptionsblock.h:26, from nxsassumptionsblock.cpp:22: ../ncl/nxsstring.h:266:17: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/iomanip:42, from nxsassumptionsblock.cpp:19: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c nxsblock.cpp -o nxsblock.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c -o nxsdatablock.lo nxsdatablock.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c nxsdatablock.cpp -fPIC -DPIC -o .libs/nxsdatablock.o In file included from ../ncl/nxsexception.h:23, from ../ncl/nxsblock.h:24, from ../ncl/nxstaxablock.h:23, from ../ncl/nxscharactersblock.h:29, from ../ncl/nxsdatablock.h:23, from nxsdatablock.cpp:20: ../ncl/nxsstring.h:266:17: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from ../ncl/nxscharactersblock.h:23: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c nxscxxdiscretematrix.cpp -o nxscxxdiscretematrix.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c nxsdatablock.cpp -o nxsdatablock.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c -o nxsdistancesblock.lo nxsdistancesblock.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c nxsdistancesblock.cpp -fPIC -DPIC -o .libs/nxsdistancesblock.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c -o nxsexception.lo nxsexception.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c nxsexception.cpp -fPIC -DPIC -o .libs/nxsexception.o In file included from ../ncl/nxsexception.h:23, from ../ncl/nxsblock.h:24, from ../ncl/nxstaxablock.h:23, from ../ncl/nxsdistancesblock.h:24, from nxsdistancesblock.cpp:23: ../ncl/nxsstring.h:266:17: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/iomanip:42, from nxsdistancesblock.cpp:19: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../ncl/nxsexception.h:23, from nxsexception.cpp:20: ../ncl/nxsstring.h:266:17: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/functional:49, from ../ncl/nxsstring.h:26: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c nxsassumptionsblock.cpp -o nxsassumptionsblock.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c nxsexception.cpp -o nxsexception.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c -o nxsmultiformat.lo nxsmultiformat.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c nxsmultiformat.cpp -fPIC -DPIC -o .libs/nxsmultiformat.o In file included from ../ncl/nxsexception.h:23, from ../ncl/nxsblock.h:24, from ../ncl/nxspublicblocks.h:24, from ../ncl/nxsmultiformat.h:25, from nxsmultiformat.cpp:50: ../ncl/nxsstring.h:266:17: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from nxsmultiformat.cpp:48: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c nxsdistancesblock.cpp -o nxsdistancesblock.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c -o nxspublicblocks.lo nxspublicblocks.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c nxspublicblocks.cpp -fPIC -DPIC -o .libs/nxspublicblocks.o In file included from ../ncl/nxsexception.h:23, from ../ncl/nxsblock.h:24, from ../ncl/nxspublicblocks.h:24, from nxspublicblocks.cpp:24: ../ncl/nxsstring.h:266:17: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from nxspublicblocks.cpp:22: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c nxscharactersblock.cpp -o nxscharactersblock.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c nxsmultiformat.cpp -o nxsmultiformat.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c -o nxsreader.lo nxsreader.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c nxsreader.cpp -fPIC -DPIC -o .libs/nxsreader.o In file included from ../ncl/nxsreader.h:24, from nxsreader.cpp:26: ../ncl/nxsstring.h:266:17: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_tree.h:65, from /usr/include/c++/13/set:62, from nxsreader.cpp:21: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c nxspublicblocks.cpp -o nxspublicblocks.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c -o nxssetreader.lo nxssetreader.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c nxssetreader.cpp -fPIC -DPIC -o .libs/nxssetreader.o In file included from ../ncl/nxsexception.h:23, from ../ncl/nxstoken.h:23, from ../ncl/nxssetreader.h:23, from nxssetreader.cpp:20: ../ncl/nxsstring.h:266:17: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from ../ncl/nxssetreader.h:22: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c nxssetreader.cpp -o nxssetreader.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c nxsreader.cpp -o nxsreader.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c -o nxsstring.lo nxsstring.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c nxsstring.cpp -fPIC -DPIC -o .libs/nxsstring.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c -o nxstaxablock.lo nxstaxablock.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c nxstaxablock.cpp -fPIC -DPIC -o .libs/nxstaxablock.o In file included from nxsstring.cpp:25: ../ncl/nxsstring.h:266:17: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from ../ncl/nxsdefs.h:22, from nxsstring.cpp:24: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../ncl/nxsexception.h:23, from ../ncl/nxsblock.h:24, from ../ncl/nxstaxablock.h:23, from nxstaxablock.cpp:20: ../ncl/nxsstring.h:266:17: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from ../ncl/nxsdefs.h:22, from ../ncl/nxstaxablock.h:22: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c nxsstring.cpp -o nxsstring.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c -o nxstaxaassociationblock.lo nxstaxaassociationblock.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c nxstaxaassociationblock.cpp -fPIC -DPIC -o .libs/nxstaxaassociationblock.o In file included from ../ncl/nxsexception.h:23, from ../ncl/nxsblock.h:24, from ../ncl/nxstaxablock.h:23, from ../ncl/nxstaxaassociationblock.h:23, from nxstaxaassociationblock.cpp:25: ../ncl/nxsstring.h:266:17: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/iomanip:42, from nxstaxaassociationblock.cpp:20: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c -o nxstoken.lo nxstoken.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c nxstoken.cpp -fPIC -DPIC -o .libs/nxstoken.o In file included from ../ncl/nxsexception.h:23, from ../ncl/nxstoken.h:23, from nxstoken.cpp:22: ../ncl/nxsstring.h:266:17: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from nxstoken.cpp:21: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c nxstaxablock.cpp -o nxstaxablock.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c -o nxstreesblock.lo nxstreesblock.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c nxstreesblock.cpp -fPIC -DPIC -o .libs/nxstreesblock.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c nxstaxaassociationblock.cpp -o nxstaxaassociationblock.o >/dev/null 2>&1 In file included from ../ncl/nxsexception.h:23, from ../ncl/nxsblock.h:24, from ../ncl/nxstaxablock.h:23, from ../ncl/nxstreesblock.h:25, from nxstreesblock.cpp:23: ../ncl/nxsstring.h:266:17: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from nxstreesblock.cpp:20: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c -o nxsunalignedblock.lo nxsunalignedblock.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c nxsunalignedblock.cpp -fPIC -DPIC -o .libs/nxsunalignedblock.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c nxstoken.cpp -o nxstoken.o >/dev/null 2>&1 In file included from ../ncl/nxsexception.h:23, from ../ncl/nxsblock.h:24, from ../ncl/nxstaxablock.h:23, from ../ncl/nxsunalignedblock.h:24, from nxsunalignedblock.cpp:21: ../ncl/nxsstring.h:266:17: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from ../ncl/nxsdefs.h:22, from ../ncl/nxsunalignedblock.h:23: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c nxstreesblock.cpp -o nxstreesblock.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c nxsunalignedblock.cpp -o nxsunalignedblock.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -version-info 2:0:0 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o libncl.la -rpath /usr/lib/powerpc64le-linux-gnu nxsassumptionsblock.lo nxsblock.lo nxscharactersblock.lo nxscxxdiscretematrix.lo nxsdatablock.lo nxsdistancesblock.lo nxsexception.lo nxsmultiformat.lo nxspublicblocks.lo nxsreader.lo nxssetreader.lo nxsstring.lo nxstaxablock.lo nxstaxaassociationblock.lo nxstoken.lo nxstreesblock.lo nxsunalignedblock.lo libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/powerpc64le-linux-gnu/13/../../../powerpc64le-linux-gnu/crti.o /usr/lib/gcc/powerpc64le-linux-gnu/13/crtbeginS.o .libs/nxsassumptionsblock.o .libs/nxsblock.o .libs/nxscharactersblock.o .libs/nxscxxdiscretematrix.o .libs/nxsdatablock.o .libs/nxsdistancesblock.o .libs/nxsexception.o .libs/nxsmultiformat.o .libs/nxspublicblocks.o .libs/nxsreader.o .libs/nxssetreader.o .libs/nxsstring.o .libs/nxstaxablock.o .libs/nxstaxaassociationblock.o .libs/nxstoken.o .libs/nxstreesblock.o .libs/nxsunalignedblock.o -L/usr/lib/gcc/powerpc64le-linux-gnu/13 -L/usr/lib/gcc/powerpc64le-linux-gnu/13/../../../powerpc64le-linux-gnu -L/usr/lib/gcc/powerpc64le-linux-gnu/13/../../../../lib -L/lib/powerpc64le-linux-gnu -L/lib/../lib -L/usr/lib/powerpc64le-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/powerpc64le-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/powerpc64le-linux-gnu/13/crtendS.o /usr/lib/gcc/powerpc64le-linux-gnu/13/../../../powerpc64le-linux-gnu/crtn.o -g -O3 -flto=auto -fstack-protector-strong -O3 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libncl.so.2 -o .libs/libncl.so.2.0.0 libtool: link: (cd ".libs" && rm -f "libncl.so.2" && ln -s "libncl.so.2.0.0" "libncl.so.2") libtool: link: (cd ".libs" && rm -f "libncl.so" && ln -s "libncl.so.2.0.0" "libncl.so") libtool: link: ar cr .libs/libncl.a nxsassumptionsblock.o nxsblock.o nxscharactersblock.o nxscxxdiscretematrix.o nxsdatablock.o nxsdistancesblock.o nxsexception.o nxsmultiformat.o nxspublicblocks.o nxsreader.o nxssetreader.o nxsstring.o nxstaxablock.o nxstaxaassociationblock.o nxstoken.o nxstreesblock.o nxsunalignedblock.o libtool: link: ranlib .libs/libncl.a libtool: link: ( cd ".libs" && rm -f "libncl.la" && ln -s "../libncl.la" "libncl.la" ) make[3]: Leaving directory '/<>/ncl' Making all in example make[3]: Entering directory '/<>/example' Making all in basiccmdline make[4]: Entering directory '/<>/example/basiccmdline' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c -o basiccmdline.o basiccmdline.cpp In file included from ../../ncl/ncl.h:79, from basiccmdline.cpp:20: ../../ncl/nxsstring.h:266:17: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from ../../ncl/ncl.h:45: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o basiccmdline basiccmdline.o ../../ncl/libncl.la libtool: link: g++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/basiccmdline basiccmdline.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/<>/example/basiccmdline' Making all in check-taxo-nodes make[4]: Entering directory '/<>/example/check-taxo-nodes' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c -o checktaxonnodes-checktaxonnodes.o `test -f 'checktaxonnodes.cpp' || echo './'`checktaxonnodes.cpp In file included from ../../ncl/ncl.h:79, from checktaxonnodes.cpp:20: ../../ncl/nxsstring.h:266:17: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from ../../ncl/ncl.h:45: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o checktaxonnodes checktaxonnodes-checktaxonnodes.o ../../ncl/libncl.la libtool: link: g++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/checktaxonnodes checktaxonnodes-checktaxonnodes.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/<>/example/check-taxo-nodes' Making all in compressor make[4]: Entering directory '/<>/example/compressor' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c -o NEXUSCharacterCompressor-compressor.o `test -f 'compressor.cpp' || echo './'`compressor.cpp In file included from ../../ncl/nxsexception.h:23, from ../../ncl/nxsblock.h:24, from ../../ncl/nxstaxablock.h:23, from ../../ncl/nxscharactersblock.h:29, from ../../ncl/nxscxxdiscretematrix.h:28, from compressor.cpp:4: ../../ncl/nxsstring.h:266:17: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from compressor.cpp:1: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o NEXUSCharacterCompressor NEXUSCharacterCompressor-compressor.o ../../ncl/libncl.la libtool: link: g++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/NEXUSCharacterCompressor NEXUSCharacterCompressor-compressor.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/<>/example/compressor' Making all in find-unsupported-edges make[4]: Entering directory '/<>/example/find-unsupported-edges' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c -o findunsupportededges-findunsupportededges.o `test -f 'findunsupportededges.cpp' || echo './'`findunsupportededges.cpp In file included from ../../ncl/ncl.h:79, from findunsupportededges.cpp:20: ../../ncl/nxsstring.h:266:17: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from ../../ncl/ncl.h:45: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o findunsupportededges findunsupportededges-findunsupportededges.o ../../ncl/libncl.la libtool: link: g++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/findunsupportededges findunsupportededges-findunsupportededges.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/<>/example/find-unsupported-edges' Making all in gapcode make[4]: Entering directory '/<>/example/gapcode' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c -o NEXUSgapcode-gapcode.o `test -f 'gapcode.cpp' || echo './'`gapcode.cpp In file included from ../../ncl/ncl.h:79, from gapcode.cpp:46: ../../ncl/nxsstring.h:266:17: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from ../../ncl/ncl.h:45: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o NEXUSgapcode NEXUSgapcode-gapcode.o ../../ncl/libncl.la libtool: link: g++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/NEXUSgapcode NEXUSgapcode-gapcode.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/<>/example/gapcode' Making all in nclsimplest make[4]: Entering directory '/<>/example/nclsimplest' g++ -DHAVE_CONFIG_H -I. -I../.. -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c -o nclsimplest.o nclsimplest.cpp In file included from ../../ncl/ncl.h:79, from nclsimplest.cpp:1: ../../ncl/nxsstring.h:266:17: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from ../../ncl/ncl.h:45: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o nclsimplest nclsimplest.o ../../ncl/libncl.la libtool: link: g++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/nclsimplest nclsimplest.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/<>/example/nclsimplest' Making all in ncltest make[4]: Entering directory '/<>/example/ncltest' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c -o ncltest.o ncltest.cpp In file included from ../../ncl/ncl.h:79, from ncltest.cpp:20: ../../ncl/nxsstring.h:266:17: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from ../../ncl/ncl.h:45: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o ncltest ncltest.o ../../ncl/libncl.la libtool: link: g++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/ncltest ncltest.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/<>/example/ncltest' Making all in normalizer make[4]: Entering directory '/<>/example/normalizer' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c -o normalizer.o normalizer.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DJUST_VALIDATE_NEXUS -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c -o NEXUSvalidator-normalizer.o `test -f 'normalizer.cpp' || echo './'`normalizer.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONVERTER_APP -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c -o NCLconverter-normalizer.o `test -f 'normalizer.cpp' || echo './'`normalizer.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONVERTER_APP -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c -o NCLconverter-us2ml.o `test -f 'us2ml.cpp' || echo './'`us2ml.cpp In file included from ../../ncl/ncl.h:79, from normalizer.cpp:46: ../../ncl/nxsstring.h:266:17: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from ../../ncl/ncl.h:45: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../ncl/ncl.h:79, from normalizer.cpp:46: ../../ncl/nxsstring.h:266:17: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from ../../ncl/ncl.h:45: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../ncl/ncl.h:79, from normalizer.cpp:46: ../../ncl/nxsstring.h:266:17: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from ../../ncl/ncl.h:45: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../ncl/ncl.h:79, from us2ml.cpp:22: ../../ncl/nxsstring.h:266:17: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from ../../ncl/ncl.h:45: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONVERTER_APP -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c -o NCLconverter-converter.o `test -f 'converter.cpp' || echo './'`converter.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DJUST_REPORT_NEXUS -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c -o NEXUSinspector-normalizer.o `test -f 'normalizer.cpp' || echo './'`normalizer.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DTO_NEXML_CONVERTER -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c -o NEX_us2ml-normalizer.o `test -f 'normalizer.cpp' || echo './'`normalizer.cpp In file included from ../../ncl/ncl.h:79, from converter.cpp:48: ../../ncl/nxsstring.h:266:17: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from ../../ncl/ncl.h:45: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../ncl/ncl.h:79, from normalizer.cpp:46: ../../ncl/nxsstring.h:266:17: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from ../../ncl/ncl.h:45: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../ncl/ncl.h:79, from normalizer.cpp:46: ../../ncl/nxsstring.h:266:17: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from ../../ncl/ncl.h:45: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DTO_NEXML_CONVERTER -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c -o NEX_us2ml-us2ml.o `test -f 'us2ml.cpp' || echo './'`us2ml.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DMULTIFILE_NEXUS_READER -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c -o NEXUSunion-normalizer.o `test -f 'normalizer.cpp' || echo './'`normalizer.cpp In file included from ../../ncl/ncl.h:79, from us2ml.cpp:22: ../../ncl/nxsstring.h:266:17: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from ../../ncl/ncl.h:45: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../ncl/ncl.h:79, from normalizer.cpp:46: ../../ncl/nxsstring.h:266:17: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from ../../ncl/ncl.h:45: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o NEXUSnormalizer normalizer.o ../../ncl/libncl.la libtool: link: g++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/NEXUSnormalizer normalizer.o ../../ncl/.libs/libncl.so /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o NEXUSvalidator NEXUSvalidator-normalizer.o ../../ncl/libncl.la libtool: link: g++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/NEXUSvalidator NEXUSvalidator-normalizer.o ../../ncl/.libs/libncl.so /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o NCLconverter NCLconverter-normalizer.o NCLconverter-us2ml.o NCLconverter-converter.o ../../ncl/libncl.la libtool: link: g++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/NCLconverter NCLconverter-normalizer.o NCLconverter-us2ml.o NCLconverter-converter.o ../../ncl/.libs/libncl.so normalizer.cpp:102:14: warning: 'substituteSafeTaxaLabels' violates the C++ One Definition Rule [-Wodr] 102 | void substituteSafeTaxaLabels(PublicNexusReader & reader, std::string filepath, bool evenTrivial); | ^ converter.cpp:140:6: note: return value type mismatch 140 | bool substituteSafeTaxaLabels(PublicNexusReader &nexusReader, std::string filepath, bool evenTrivial) | ^ converter.cpp:140:6: note: type 'bool' should match type 'void' converter.cpp:140:6: note: 'substituteSafeTaxaLabels' was previously declared here /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o NEXUSinspector NEXUSinspector-normalizer.o ../../ncl/libncl.la /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o NEXUSunion NEXUSunion-normalizer.o ../../ncl/libncl.la libtool: link: g++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/NEXUSinspector NEXUSinspector-normalizer.o ../../ncl/.libs/libncl.so libtool: link: g++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/NEXUSunion NEXUSunion-normalizer.o ../../ncl/.libs/libncl.so /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o NEX_us2ml NEX_us2ml-normalizer.o NEX_us2ml-us2ml.o ../../ncl/libncl.la libtool: link: g++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/NEX_us2ml NEX_us2ml-normalizer.o NEX_us2ml-us2ml.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/<>/example/normalizer' Making all in ot-subtree make[4]: Entering directory '/<>/example/ot-subtree' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c -o otsubtree-otsubtree.o `test -f 'otsubtree.cpp' || echo './'`otsubtree.cpp In file included from ../../ncl/ncl.h:79, from otsubtree.cpp:20: ../../ncl/nxsstring.h:266:17: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from ../../ncl/ncl.h:45: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o otsubtree otsubtree-otsubtree.o ../../ncl/libncl.la libtool: link: g++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/otsubtree otsubtree-otsubtree.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/<>/example/ot-subtree' Making all in ot-tree-inspect make[4]: Entering directory '/<>/example/ot-tree-inspect' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c -o otTreeInspect-ot_tree_inspect.o `test -f 'ot_tree_inspect.cpp' || echo './'`ot_tree_inspect.cpp In file included from ../../ncl/ncl.h:79, from ot_tree_inspect.cpp:46: ../../ncl/nxsstring.h:266:17: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from ../../ncl/ncl.h:45: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o otTreeInspect otTreeInspect-ot_tree_inspect.o ../../ncl/libncl.la libtool: link: g++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/otTreeInspect otTreeInspect-ot_tree_inspect.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/<>/example/ot-tree-inspect' Making all in outdeg1count make[4]: Entering directory '/<>/example/outdeg1count' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c -o outdeg1count-outdeg1count.o `test -f 'outdeg1count.cpp' || echo './'`outdeg1count.cpp In file included from ../../ncl/ncl.h:79, from outdeg1count.cpp:46: ../../ncl/nxsstring.h:266:17: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from ../../ncl/ncl.h:45: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o outdeg1count outdeg1count-outdeg1count.o ../../ncl/libncl.la libtool: link: g++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/outdeg1count outdeg1count-outdeg1count.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/<>/example/outdeg1count' Making all in patristic make[4]: Entering directory '/<>/example/patristic' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c -o patristic.o patristic.cpp In file included from ../../ncl/ncl.h:79, from patristic.cpp:33: ../../ncl/nxsstring.h:266:17: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from ../../ncl/ncl.h:45: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o patristicmat patristic.o ../../ncl/libncl.la libtool: link: g++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/patristicmat patristic.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/<>/example/patristic' Making all in phylobaseinterface make[4]: Entering directory '/<>/example/phylobaseinterface' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c -o NCLInterface.o NCLInterface.cpp In file included from ../../ncl/ncl.h:79, from NCLInterface.cpp:24: ../../ncl/nxsstring.h:266:17: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from ../../ncl/ncl.h:45: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o PhylobaseNCLInterfaceExample NCLInterface.o ../../ncl/libncl.la libtool: link: g++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/PhylobaseNCLInterfaceExample NCLInterface.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/<>/example/phylobaseinterface' Making all in polytomy-count make[4]: Entering directory '/<>/example/polytomy-count' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c -o polytomycount-polytomy_count.o `test -f 'polytomy_count.cpp' || echo './'`polytomy_count.cpp In file included from ../../ncl/ncl.h:79, from polytomy_count.cpp:46: ../../ncl/nxsstring.h:266:17: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from ../../ncl/ncl.h:45: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o polytomycount polytomycount-polytomy_count.o ../../ncl/libncl.la libtool: link: g++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/polytomycount polytomycount-polytomy_count.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/<>/example/polytomy-count' Making all in splitsinfile make[4]: Entering directory '/<>/example/splitsinfile' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c -o NEXUStosplits-splitsinfile.o `test -f 'splitsinfile.cpp' || echo './'`splitsinfile.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c -o NEXUStosplits-splitsstructs.o `test -f 'splitsstructs.cpp' || echo './'`splitsstructs.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c -o splitsinfile.o splitsinfile.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c -o splitsstructs.o splitsstructs.cpp In file included from ../../ncl/nxsexception.h:23, from ../../ncl/nxsblock.h:24, from ../../ncl/nxstaxablock.h:23, from ../../ncl/nxstreesblock.h:25, from splitsstructs.h:9, from splitsstructs.cpp:1: ../../ncl/nxsstring.h:266:17: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from splitsstructs.h:3: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../ncl/nxsexception.h:23, from ../../ncl/nxsblock.h:24, from ../../ncl/nxstaxablock.h:23, from ../../ncl/nxstreesblock.h:25, from splitsstructs.h:9, from splitsstructs.cpp:1: ../../ncl/nxsstring.h:266:17: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from splitsstructs.h:3: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../ncl/ncl.h:79, from splitsinfile.cpp:46: ../../ncl/nxsstring.h:266:17: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from ../../ncl/ncl.h:45: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../ncl/ncl.h:79, from splitsinfile.cpp:46: ../../ncl/nxsstring.h:266:17: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from ../../ncl/ncl.h:45: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o majrule splitsinfile.o splitsstructs.o ../../ncl/libncl.la libtool: link: g++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/majrule splitsinfile.o splitsstructs.o ../../ncl/.libs/libncl.so /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o NEXUStosplits NEXUStosplits-splitsinfile.o NEXUStosplits-splitsstructs.o ../../ncl/libncl.la libtool: link: g++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/NEXUStosplits NEXUStosplits-splitsinfile.o NEXUStosplits-splitsstructs.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/<>/example/splitsinfile' Making all in subsetter make[4]: Entering directory '/<>/example/subsetter' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c -o NEXUSsubsetter-subsetter.o `test -f 'subsetter.cpp' || echo './'`subsetter.cpp In file included from ../../ncl/nxsexception.h:23, from ../../ncl/nxsblock.h:24, from ../../ncl/nxspublicblocks.h:24, from ../../ncl/nxsmultiformat.h:25, from subsetter.cpp:4: ../../ncl/nxsstring.h:266:17: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from subsetter.cpp:1: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o NEXUSsubsetter NEXUSsubsetter-subsetter.o ../../ncl/libncl.la libtool: link: g++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/NEXUSsubsetter NEXUSsubsetter-subsetter.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/<>/example/subsetter' Making all in translate make[4]: Entering directory '/<>/example/translate' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -c -o NEXUStranslate-translateNuc.o `test -f 'translateNuc.cpp' || echo './'`translateNuc.cpp In file included from ../../ncl/ncl.h:79, from translateNuc.cpp:46: ../../ncl/nxsstring.h:266:17: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 266 | : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from ../../ncl/ncl.h:45: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o NEXUStranslate NEXUStranslate-translateNuc.o ../../ncl/libncl.la libtool: link: g++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libncl-2.1.21+git20210811.b1213a7-5 -O3 -ffast-math -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/NEXUStranslate NEXUStranslate-translateNuc.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/<>/example/translate' make[4]: Entering directory '/<>/example' make[4]: Nothing to be done for 'all-am'. make[4]: Leaving directory '/<>/example' make[3]: Leaving directory '/<>/example' Making all in test make[3]: Entering directory '/<>/test' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/test' make[3]: Entering directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_auto_test -a make -j4 check "TESTSUITEFLAGS=-j4 --verbose" VERBOSE=1 make[1]: Entering directory '/<>' Making check in ncl make[2]: Entering directory '/<>/ncl' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/ncl' Making check in example make[2]: Entering directory '/<>/example' Making check in basiccmdline make[3]: Entering directory '/<>/example/basiccmdline' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/example/basiccmdline' Making check in check-taxo-nodes make[3]: Entering directory '/<>/example/check-taxo-nodes' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/example/check-taxo-nodes' Making check in compressor make[3]: Entering directory '/<>/example/compressor' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/example/compressor' Making check in find-unsupported-edges make[3]: Entering directory '/<>/example/find-unsupported-edges' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/example/find-unsupported-edges' Making check in gapcode make[3]: Entering directory '/<>/example/gapcode' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/example/gapcode' Making check in nclsimplest make[3]: Entering directory '/<>/example/nclsimplest' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/example/nclsimplest' Making check in ncltest make[3]: Entering directory '/<>/example/ncltest' make check-local make[4]: Entering directory '/<>/example/ncltest' /usr/bin/python3 ../../test/roundTripNCLTest.py ../../example/ncltest/ncltest ../../test/OldValidIn ../../test/OldValidOut "/<>/example/ncltest/ncltest" "-s2" "/<>/test/OldValidIn/m.nex" [Reading -s2 ] [Reading -s2 ] storing read block: TAXA storing read block: CHARACTERS storing read block: ASSUMPTIONS ../../test/roundTripNCLTest.py : Call to /<>/example/ncltest/ncltest succeeded for /<>/test/OldValidIn/m.nex "/<>/example/ncltest/ncltest" "-s2" "/<>/test/OldValidOut/m.nex" [Reading -s2 ] [Reading -s2 ] storing read block: TAXA storing implied block: TAXA storing read block: DATA ../../test/roundTripNCLTest.py : Call to /<>/example/ncltest/ncltest succeeded for /<>/test/OldValidOut/m.nex make[4]: Leaving directory '/<>/example/ncltest' make[3]: Leaving directory '/<>/example/ncltest' Making check in normalizer make[3]: Entering directory '/<>/example/normalizer' make check-local make[4]: Entering directory '/<>/example/normalizer' /usr/bin/python3 ../../test/roundTripNCLTest.py ../../example/normalizer/NEXUSnormalizer ../../data/characters.nex ../../test/data "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/data/characters.nex" [Reading /<>/data/characters.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/data/characters.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/data/characters.nex" [Reading /<>/test/data/characters.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/data/characters.nex /usr/bin/python3 ../../test/roundTripNCLTest.py ../../example/normalizer/NEXUSnormalizer ../../data/sample.tre ../../test/data "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/data/sample.tre" [Reading /<>/data/sample.tre ] Executing storing read block: PAUP storing read block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/data/sample.tre "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/data/sample.tre" [Reading /<>/test/data/sample.tre ] Executing storing read block: PAUP storing read block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/data/sample.tre /usr/bin/python3 ../../test/roundTripNCLTest.py ../../example/normalizer//NEXUSnormalizer ../../test/NTSValidIn ../../test/NTSValidOut "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidIn/t.nex" [Reading /<>/test/NTSValidIn/t.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidIn/t.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidOut/t.nex" [Reading /<>/test/NTSValidOut/t.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidOut/t.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidIn/bglobin.nex" [Reading /<>/test/NTSValidIn/bglobin.nex ] Executing storing implied block: TAXA storing read block: DATA storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidIn/bglobin.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidOut/bglobin.nex" [Reading /<>/test/NTSValidOut/bglobin.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidOut/bglobin.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidIn/anolis.nex" [Reading /<>/test/NTSValidIn/anolis.nex ] Executing storing implied block: TAXA storing read block: DATA storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidIn/anolis.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidOut/anolis.nex" [Reading /<>/test/NTSValidOut/anolis.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidOut/anolis.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidIn/kim.nex" [Reading /<>/test/NTSValidIn/kim.nex ] Executing storing implied block: TAXA storing read block: DATA storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidIn/kim.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidOut/kim.nex" [Reading /<>/test/NTSValidOut/kim.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidOut/kim.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidIn/partitions.nex" [Reading /<>/test/NTSValidIn/partitions.nex ] Executing Warning: Skipping command: blockid at line 13, column (approximately) 11 (file position 176) storing read block: TAXA storing read block: CHARACTERS storing read block: TREES storing read block: SETS storing read block: ASSUMPTIONS ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidIn/partitions.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidOut/partitions.nex" [Reading /<>/test/NTSValidOut/partitions.nex ] Executing Warning: Skipping command: blockid at line 6, column (approximately) 13 (file position 183) storing read block: TAXA storing read block: CHARACTERS storing read block: TREES storing read block: SETS storing read block: ASSUMPTIONS ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidOut/partitions.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidIn/basic-rake.nex" [Reading /<>/test/NTSValidIn/basic-rake.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES storing read block: CODONS Warning: An * is ignored in a CHARSET command at line 67, column (approximately) 46 (file position 929) Warning: An * is ignored in a CHARSET command at line 68, column (approximately) 42 (file position 968) storing read block: ASSUMPTIONS storing read block: ASSUMPTIONS storing read block: MESQUITECHARMODELS storing read block: MESQUITE ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidIn/basic-rake.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidOut/basic-rake.nex" [Reading /<>/test/NTSValidOut/basic-rake.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES storing read block: CODONS storing read block: SETS storing read block: ASSUMPTIONS storing read block: MESQUITECHARMODELS storing read block: MESQUITE ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidOut/basic-rake.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidIn/unaligned.nex" [Reading /<>/test/NTSValidIn/unaligned.nex ] Executing storing read block: TAXA storing read block: UNALIGNED ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidIn/unaligned.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidOut/unaligned.nex" [Reading /<>/test/NTSValidOut/unaligned.nex ] Executing storing read block: TAXA storing read block: UNALIGNED ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidOut/unaligned.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidIn/protein.nex" [Reading /<>/test/NTSValidIn/protein.nex ] Executing storing read block: TAXA storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidIn/protein.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidOut/protein.nex" [Reading /<>/test/NTSValidOut/protein.nex ] Executing storing read block: TAXA storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidOut/protein.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidIn/avian_ovomucoids.nex" [Reading /<>/test/NTSValidIn/avian_ovomucoids.nex ] Executing storing implied block: TAXA storing read block: DATA storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidIn/avian_ovomucoids.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidOut/avian_ovomucoids.nex" [Reading /<>/test/NTSValidOut/avian_ovomucoids.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidOut/avian_ovomucoids.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidIn/notaxablock-quotes.nex" [Reading /<>/test/NTSValidIn/notaxablock-quotes.nex ] Executing Warning: A TAXA block should be read before the TREES block (but no TAXA block was found). Taxa will be inferred from their usage in the TREES block. at line 3, column (approximately) 7 (file position 26) storing implied block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidIn/notaxablock-quotes.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidOut/notaxablock-quotes.nex" [Reading /<>/test/NTSValidOut/notaxablock-quotes.nex ] Executing storing read block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidOut/notaxablock-quotes.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidIn/replicase.nex" [Reading /<>/test/NTSValidIn/replicase.nex ] Executing storing implied block: TAXA storing read block: DATA storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidIn/replicase.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidOut/replicase.nex" [Reading /<>/test/NTSValidOut/replicase.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidOut/replicase.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidIn/distances.nex" [Reading /<>/test/NTSValidIn/distances.nex ] Executing storing read block: TAXA storing read block: DISTANCES ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidIn/distances.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidOut/distances.nex" [Reading /<>/test/NTSValidOut/distances.nex ] Executing storing read block: TAXA storing read block: DISTANCES ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidOut/distances.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidIn/basic-bush-mixed-line-endings.nex" [Reading /<>/test/NTSValidIn/basic-bush-mixed-line-endings.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidIn/basic-bush-mixed-line-endings.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidOut/basic-bush-mixed-line-endings.nex" [Reading /<>/test/NTSValidOut/basic-bush-mixed-line-endings.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidOut/basic-bush-mixed-line-endings.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidIn/associates.nex" [Reading /<>/test/NTSValidIn/associates.nex ] Executing storing read block: TAXA storing read block: TAXA storing read block: TAXAASSOCIATION ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidIn/associates.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidOut/associates.nex" [Reading /<>/test/NTSValidOut/associates.nex ] Executing storing read block: TAXA storing read block: TAXA storing read block: TAXAASSOCIATION ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidOut/associates.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidIn/linktest.nex" [Reading /<>/test/NTSValidIn/linktest.nex ] Executing Warning: Skipping command: blockid at line 13, column (approximately) 11 (file position 189) storing read block: TAXA Warning: Skipping command: blockid at line 27, column (approximately) 11 (file position 388) storing read block: TAXA storing read block: CHARACTERS storing read block: CHARACTERS Warning: Skipping unknown LINK subcommand: characters at line 61, column (approximately) 38 (file position 1551) storing read block: TREES Warning: Skipping unknown LINK subcommand: characters at line 71, column (approximately) 38 (file position 1745) storing read block: TREES storing implied block: ASSUMPTIONS storing implied block: ASSUMPTIONS storing read block: ASSUMPTIONS Warning: A TaxSet with the name o has already been encountered. The later definition will preempt the earlier definition(s). at line 90, column (approximately) 42 (file position 2360) storing read block: ASSUMPTIONS storing read block: ASSUMPTIONS ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidIn/linktest.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidOut/linktest.nex" [Reading /<>/test/NTSValidOut/linktest.nex ] Executing Warning: Skipping command: blockid at line 6, column (approximately) 13 (file position 168) storing read block: TAXA Warning: Skipping command: blockid at line 12, column (approximately) 13 (file position 341) storing read block: TAXA storing read block: CHARACTERS storing read block: CHARACTERS storing read block: TREES storing read block: TREES storing read block: SETS storing read block: SETS storing read block: SETS Warning: A TaxSet with the name o has already been encountered. The later definition will preempt the earlier definition(s). at line 84, column (approximately) 20 (file position 2384) storing read block: SETS storing read block: SETS ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidOut/linktest.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidIn/m.nex" [Reading /<>/test/NTSValidIn/m.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: ASSUMPTIONS ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidIn/m.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidOut/m.nex" [Reading /<>/test/NTSValidOut/m.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: SETS ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidOut/m.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidIn/dzmissing_bug.nex" [Reading /<>/test/NTSValidIn/dzmissing_bug.nex ] Executing storing implied block: TAXA storing read block: DATA storing read block: ASSUMPTIONS storing read block: MACCLADE ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidIn/dzmissing_bug.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidOut/dzmissing_bug.nex" [Reading /<>/test/NTSValidOut/dzmissing_bug.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: ASSUMPTIONS storing read block: MACCLADE ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidOut/dzmissing_bug.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidIn/paup_characters.nex" [Reading /<>/test/NTSValidIn/paup_characters.nex ] Executing Warning: Skipping command: blockid at line 13, column (approximately) 11 (file position 176) storing read block: TAXA storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidIn/paup_characters.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidOut/paup_characters.nex" [Reading /<>/test/NTSValidOut/paup_characters.nex ] Executing Warning: Skipping command: blockid at line 6, column (approximately) 13 (file position 188) storing read block: TAXA storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidOut/paup_characters.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidIn/adh.nex" [Reading /<>/test/NTSValidIn/adh.nex ] Executing storing implied block: TAXA storing read block: DATA storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidIn/adh.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidOut/adh.nex" [Reading /<>/test/NTSValidOut/adh.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidOut/adh.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidIn/basic-bush-mac.nex" [Reading /<>/test/NTSValidIn/basic-bush-mac.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidIn/basic-bush-mac.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidOut/basic-bush-mac.nex" [Reading /<>/test/NTSValidOut/basic-bush-mac.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidOut/basic-bush-mac.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidIn/charsets.nex" [Reading /<>/test/NTSValidIn/charsets.nex ] Executing Warning: Skipping command: blockid at line 13, column (approximately) 11 (file position 176) storing read block: TAXA storing read block: CHARACTERS storing read block: SETS storing read block: ASSUMPTIONS ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidIn/charsets.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidOut/charsets.nex" [Reading /<>/test/NTSValidOut/charsets.nex ] Executing Warning: Skipping command: blockid at line 6, column (approximately) 13 (file position 183) storing read block: TAXA storing read block: CHARACTERS storing read block: SETS storing read block: ASSUMPTIONS ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidOut/charsets.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidIn/primates.nex" [Reading /<>/test/NTSValidIn/primates.nex ] Executing storing implied block: TAXA storing read block: DATA ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidIn/primates.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidOut/primates.nex" [Reading /<>/test/NTSValidOut/primates.nex ] Executing storing read block: TAXA storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidOut/primates.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidIn/cynmix.nex" [Reading /<>/test/NTSValidIn/cynmix.nex ] Executing storing implied block: TAXA storing read block: DATA storing read block: MRBAYES storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidIn/cynmix.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidOut/cynmix.nex" [Reading /<>/test/NTSValidOut/cynmix.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: MRBAYES storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidOut/cynmix.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidIn/mdata.nex" [Reading /<>/test/NTSValidIn/mdata.nex ] Executing storing implied block: TAXA storing read block: DATA storing read block: ASSUMPTIONS ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidIn/mdata.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidOut/mdata.nex" [Reading /<>/test/NTSValidOut/mdata.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: SETS ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidOut/mdata.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidIn/characters.nex" [Reading /<>/test/NTSValidIn/characters.nex ] Executing Warning: Skipping command: blockid at line 13, column (approximately) 11 (file position 176) storing read block: TAXA storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidIn/characters.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidOut/characters.nex" [Reading /<>/test/NTSValidOut/characters.nex ] Executing Warning: Skipping command: blockid at line 6, column (approximately) 13 (file position 183) storing read block: TAXA storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidOut/characters.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidIn/basic-bush-unix.nex" [Reading /<>/test/NTSValidIn/basic-bush-unix.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidIn/basic-bush-unix.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidOut/basic-bush-unix.nex" [Reading /<>/test/NTSValidOut/basic-bush-unix.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidOut/basic-bush-unix.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidIn/treeswithouttaxa.nex" [Reading /<>/test/NTSValidIn/treeswithouttaxa.nex ] Executing Warning: A TAXA block should be read before the TREES block (but no TAXA block was found). Taxa will be inferred from their usage in the TREES block. at line 3, column (approximately) 10 (file position 26) storing implied block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidIn/treeswithouttaxa.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidOut/treeswithouttaxa.nex" [Reading /<>/test/NTSValidOut/treeswithouttaxa.nex ] Executing storing read block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidOut/treeswithouttaxa.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidIn/notaxablock.nex" [Reading /<>/test/NTSValidIn/notaxablock.nex ] Executing Warning: A TAXA block should be read before the TREES block (but no TAXA block was found). Taxa will be inferred from their usage in the TREES block. at line 3, column (approximately) 13 (file position 32) storing implied block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidIn/notaxablock.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidOut/notaxablock.nex" [Reading /<>/test/NTSValidOut/notaxablock.nex ] Executing storing read block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidOut/notaxablock.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidIn/basic-bush-dos.nex" [Reading /<>/test/NTSValidIn/basic-bush-dos.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidIn/basic-bush-dos.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidOut/basic-bush-dos.nex" [Reading /<>/test/NTSValidOut/basic-bush-dos.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidOut/basic-bush-dos.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidIn/nhxtree.nex" [Reading /<>/test/NTSValidIn/nhxtree.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES storing read block: CODONS Warning: An * is ignored in a CHARSET command at line 67, column (approximately) 46 (file position 1014) Warning: An * is ignored in a CHARSET command at line 68, column (approximately) 42 (file position 1053) storing read block: ASSUMPTIONS storing read block: ASSUMPTIONS storing read block: MESQUITECHARMODELS storing read block: MESQUITE ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidIn/nhxtree.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidOut/nhxtree.nex" [Reading /<>/test/NTSValidOut/nhxtree.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES storing read block: CODONS storing read block: SETS storing read block: ASSUMPTIONS storing read block: MESQUITECHARMODELS storing read block: MESQUITE ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidOut/nhxtree.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidIn/parens_intree.tre" [Reading /<>/test/NTSValidIn/parens_intree.tre ] Executing storing read block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidIn/parens_intree.tre "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidOut/parens_intree.tre" [Reading /<>/test/NTSValidOut/parens_intree.tre ] Executing storing read block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidOut/parens_intree.tre /usr/bin/python3 ../../test/roundTripNCLTest.py -x ../../example/normalizer/NEXUSnormalizer ../../test/funkyValidIn ../../test/funkyValidOut "/<>/example/normalizer/NEXUSnormalizer" "-s2" "-x" "/<>/test/funkyValidIn/choke.tre" [Reading /<>/test/funkyValidIn/choke.tre ] Executing Warning: A TAXA block should be read before the TREES block (but no TAXA block was found). Taxa will be inferred from their usage in the TREES block. at line 5, column (approximately) 6 (file position 74) storing implied block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/funkyValidIn/choke.tre "/<>/example/normalizer/NEXUSnormalizer" "-s2" "-x" "/<>/test/funkyValidOut/choke.tre" [Reading /<>/test/funkyValidOut/choke.tre ] Executing storing read block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/funkyValidOut/choke.tre /usr/bin/python3 ../../test/roundTripNCLTest.py -e ../../example/normalizer/NEXUSnormalizer ../../test/ExternalValidIn ../../test/ExternalValidOut "/<>/example/normalizer/NEXUSnormalizer" "-s2" "-fphyliptree" "/<>/test/ExternalValidIn/phyliptree_simple.phy" [Reading /<>/test/ExternalValidIn/phyliptree_simple.phy ] Executing storing implied block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/ExternalValidIn/phyliptree_simple.phy "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/ExternalValidOut/phyliptree_simple.phy" [Reading /<>/test/ExternalValidOut/phyliptree_simple.phy ] Executing storing read block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/ExternalValidOut/phyliptree_simple.phy "/<>/example/normalizer/NEXUSnormalizer" "-s2" "-faaphylip" "/<>/test/ExternalValidIn/aaphylip_emboss.phy" [Reading /<>/test/ExternalValidIn/aaphylip_emboss.phy ] Executing storing implied block: TAXA storing read block: DATA ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/ExternalValidIn/aaphylip_emboss.phy "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/ExternalValidOut/aaphylip_emboss.phy" [Reading /<>/test/ExternalValidOut/aaphylip_emboss.phy ] Executing storing read block: TAXA storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/ExternalValidOut/aaphylip_emboss.phy "/<>/example/normalizer/NEXUSnormalizer" "-s2" "-faaphylipinterleaved" "/<>/test/ExternalValidIn/aaphylipinterleaved_emboss.phy" [Reading /<>/test/ExternalValidIn/aaphylipinterleaved_emboss.phy ] Executing storing implied block: TAXA storing read block: DATA ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/ExternalValidIn/aaphylipinterleaved_emboss.phy "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/ExternalValidOut/aaphylipinterleaved_emboss.phy" [Reading /<>/test/ExternalValidOut/aaphylipinterleaved_emboss.phy ] Executing storing read block: TAXA storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/ExternalValidOut/aaphylipinterleaved_emboss.phy "/<>/example/normalizer/NEXUSnormalizer" "-s2" "-fdnarelaxedphylip" "/<>/test/ExternalValidIn/dnarelaxedphylip_brana.phy" [Reading /<>/test/ExternalValidIn/dnarelaxedphylip_brana.phy ] Executing storing implied block: TAXA storing read block: DATA ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/ExternalValidIn/dnarelaxedphylip_brana.phy "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/ExternalValidOut/dnarelaxedphylip_brana.phy" [Reading /<>/test/ExternalValidOut/dnarelaxedphylip_brana.phy ] Executing storing read block: TAXA storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/ExternalValidOut/dnarelaxedphylip_brana.phy "/<>/example/normalizer/NEXUSnormalizer" "-s2" "-frelaxedphyliptree" "/<>/test/ExternalValidIn/relaxedphyliptree_q.phy" [Reading /<>/test/ExternalValidIn/relaxedphyliptree_q.phy ] Executing storing implied block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/ExternalValidIn/relaxedphyliptree_q.phy "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/ExternalValidOut/relaxedphyliptree_q.phy" [Reading /<>/test/ExternalValidOut/relaxedphyliptree_q.phy ] Executing storing read block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/ExternalValidOut/relaxedphyliptree_q.phy "/<>/example/normalizer/NEXUSnormalizer" "-s2" "-fdnarelaxedphylip" "/<>/test/ExternalValidIn/dnarelaxedphylip_rana.phy" [Reading /<>/test/ExternalValidIn/dnarelaxedphylip_rana.phy ] Executing storing implied block: TAXA storing read block: DATA ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/ExternalValidIn/dnarelaxedphylip_rana.phy "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/ExternalValidOut/dnarelaxedphylip_rana.phy" [Reading /<>/test/ExternalValidOut/dnarelaxedphylip_rana.phy ] Executing storing read block: TAXA storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/ExternalValidOut/dnarelaxedphylip_rana.phy "/<>/example/normalizer/NEXUSnormalizer" "-s2" "-faarelaxedphylip" "/<>/test/ExternalValidIn/aarelaxedphylip_rana.phy" [Reading /<>/test/ExternalValidIn/aarelaxedphylip_rana.phy ] Executing storing implied block: TAXA storing read block: DATA ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/ExternalValidIn/aarelaxedphylip_rana.phy "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/ExternalValidOut/aarelaxedphylip_rana.phy" [Reading /<>/test/ExternalValidOut/aarelaxedphylip_rana.phy ] Executing storing read block: TAXA storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/ExternalValidOut/aarelaxedphylip_rana.phy "/<>/example/normalizer/NEXUSnormalizer" "-s2" "-faafasta" "/<>/test/ExternalValidIn/aafasta_twoprot.fas" [Reading /<>/test/ExternalValidIn/aafasta_twoprot.fas ] Executing storing implied block: TAXA storing read block: DATA ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/ExternalValidIn/aafasta_twoprot.fas "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/ExternalValidOut/aafasta_twoprot.fas" [Reading /<>/test/ExternalValidOut/aafasta_twoprot.fas ] Executing storing read block: TAXA storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/ExternalValidOut/aafasta_twoprot.fas "/<>/example/normalizer/NEXUSnormalizer" "-s2" "-faaaln" "/<>/test/ExternalValidIn/aaaln_twoprot_undec.aln" [Reading /<>/test/ExternalValidIn/aaaln_twoprot_undec.aln ] Executing storing implied block: TAXA storing read block: DATA ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/ExternalValidIn/aaaln_twoprot_undec.aln "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/ExternalValidOut/aaaln_twoprot_undec.aln" [Reading /<>/test/ExternalValidOut/aaaln_twoprot_undec.aln ] Executing storing read block: TAXA storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/ExternalValidOut/aaaln_twoprot_undec.aln "/<>/example/normalizer/NEXUSnormalizer" "-s2" "-faaaln" "/<>/test/ExternalValidIn/aaaln_twoprot.aln" [Reading /<>/test/ExternalValidIn/aaaln_twoprot.aln ] Executing storing implied block: TAXA storing read block: DATA ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/ExternalValidIn/aaaln_twoprot.aln "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/ExternalValidOut/aaaln_twoprot.aln" [Reading /<>/test/ExternalValidOut/aaaln_twoprot.aln ] Executing storing read block: TAXA storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/ExternalValidOut/aaaln_twoprot.aln /usr/bin/python3 ../../test/roundTripNCLTest.py -i -e ../../example/normalizer/NEXUSnormalizer ../../test/ExternalInvalidIn "/<>/example/normalizer/NEXUSnormalizer" "-s2" "-fdnarelaxedphylip" "/<>/test/ExternalInvalidIn/dnarelaxedphylip_rana.phy" [Reading /<>/test/ExternalInvalidIn/dnarelaxedphylip_rana.phy ] Executing Error: Illegal state code "q" found when reading site 2 for taxon grylioMVZ175945 at line 12, column (approximately) 28 (and file position 20065) "/<>/example/normalizer/NEXUSnormalizer" "-s2" "-faarelaxedphylip" "/<>/test/ExternalInvalidIn/aarelaxedphylip_rana.phy" [Reading /<>/test/ExternalInvalidIn/aarelaxedphylip_rana.phy ] Executing Error: Sequence longer than 1976 found for taxon temporariaDMH84R1. The character "o" was found, and will be ignored. If the file position of this error corresponds to sequences for the next taxon in the matrix, then that is an indication that the sequences for taxon temporariaDMH84R1 are too short. at line 3, column (approximately) 2 (and file position 2011) /usr/bin/python3 ../../test/roundTripNCLTest.py -a ../../example/normalizer/NEXUSnormalizer /<>/debian/.debhelper/generated/_source/home/.ncl_round_triprc does not exist. Test stepped skipped. make[4]: Leaving directory '/<>/example/normalizer' make[3]: Leaving directory '/<>/example/normalizer' Making check in ot-subtree make[3]: Entering directory '/<>/example/ot-subtree' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/example/ot-subtree' Making check in ot-tree-inspect make[3]: Entering directory '/<>/example/ot-tree-inspect' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/example/ot-tree-inspect' Making check in outdeg1count make[3]: Entering directory '/<>/example/outdeg1count' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/example/outdeg1count' Making check in patristic make[3]: Entering directory '/<>/example/patristic' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/example/patristic' Making check in phylobaseinterface make[3]: Entering directory '/<>/example/phylobaseinterface' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/example/phylobaseinterface' Making check in polytomy-count make[3]: Entering directory '/<>/example/polytomy-count' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/example/polytomy-count' Making check in splitsinfile make[3]: Entering directory '/<>/example/splitsinfile' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/example/splitsinfile' Making check in subsetter make[3]: Entering directory '/<>/example/subsetter' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/example/subsetter' Making check in translate make[3]: Entering directory '/<>/example/translate' make check-local make[4]: Entering directory '/<>/example/translate' /usr/bin/python3 ../../test/roundTripNCLTest.py -o ../../example/translate/NEXUStranslate ../../test/TranslateIn ../../test/TranslateOut "/<>/example/translate/NEXUStranslate" "-s2" "/<>/test/TranslateIn/bglobin.nex" [Reading /<>/test/TranslateIn/bglobin.nex ] Executing storing implied block: TAXA storing read block: DATA storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /<>/example/translate/NEXUStranslate succeeded for /<>/test/TranslateIn/bglobin.nex "/<>/example/translate/NEXUStranslate" "-s2" "/<>/test/TranslateIn/bglobinoof.nex" [Reading /<>/test/TranslateIn/bglobinoof.nex ] Executing storing implied block: TAXA storing read block: DATA storing read block: CODONS ../../test/roundTripNCLTest.py : Call to /<>/example/translate/NEXUStranslate succeeded for /<>/test/TranslateIn/bglobinoof.nex make[4]: Leaving directory '/<>/example/translate' make[3]: Leaving directory '/<>/example/translate' make[3]: Entering directory '/<>/example' make[3]: Nothing to be done for 'check-am'. make[3]: Leaving directory '/<>/example' make[2]: Leaving directory '/<>/example' Making check in test make[2]: Entering directory '/<>/test' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/test' make[2]: Entering directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install -a make -j1 install DESTDIR=/<>/libncl-2.1.21\+git20210811.b1213a7/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' Making install in ncl make[2]: Entering directory '/<>/ncl' make[3]: Entering directory '/<>/ncl' /usr/bin/mkdir -p '/<>/debian/tmp/usr/lib/powerpc64le-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libncl.la '/<>/debian/tmp/usr/lib/powerpc64le-linux-gnu' libtool: install: /usr/bin/install -c .libs/libncl.so.2.0.0 /<>/debian/tmp/usr/lib/powerpc64le-linux-gnu/libncl.so.2.0.0 libtool: install: (cd /<>/debian/tmp/usr/lib/powerpc64le-linux-gnu && { ln -s -f libncl.so.2.0.0 libncl.so.2 || { rm -f libncl.so.2 && ln -s libncl.so.2.0.0 libncl.so.2; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/powerpc64le-linux-gnu && { ln -s -f libncl.so.2.0.0 libncl.so || { rm -f libncl.so && ln -s libncl.so.2.0.0 libncl.so; }; }) libtool: install: /usr/bin/install -c .libs/libncl.lai /<>/debian/tmp/usr/lib/powerpc64le-linux-gnu/libncl.la libtool: install: /usr/bin/install -c .libs/libncl.a /<>/debian/tmp/usr/lib/powerpc64le-linux-gnu/libncl.a libtool: install: chmod 644 /<>/debian/tmp/usr/lib/powerpc64le-linux-gnu/libncl.a libtool: install: ranlib /<>/debian/tmp/usr/lib/powerpc64le-linux-gnu/libncl.a libtool: warning: remember to run 'libtool --finish /usr/lib/powerpc64le-linux-gnu' /usr/bin/mkdir -p '/<>/debian/tmp/usr/include/ncl' /usr/bin/install -c -m 644 ncl.h nxsallocatematrix.h nxsassumptionsblock.h nxsblock.cpp nxsblock.h nxscharactersblock.h nxscdiscretematrix.h nxscxxdiscretematrix.h nxsdatablock.h nxsdefs.h nxsdiscretedatum.h nxsdistancedatum.h nxsdistancesblock.h nxsexception.h nxsmultiformat.h nxspublicblocks.h nxsreader.h nxssetreader.h nxsstring.h nxstaxablock.h nxstaxaassociationblock.h nxstoken.h nxstreesblock.h nxsunalignedblock.h nxsutilcopy.h '/<>/debian/tmp/usr/include/ncl' make[3]: Leaving directory '/<>/ncl' make[2]: Leaving directory '/<>/ncl' Making install in example make[2]: Entering directory '/<>/example' Making install in basiccmdline make[3]: Entering directory '/<>/example/basiccmdline' make[4]: Entering directory '/<>/example/basiccmdline' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/example/basiccmdline' make[3]: Leaving directory '/<>/example/basiccmdline' Making install in check-taxo-nodes make[3]: Entering directory '/<>/example/check-taxo-nodes' make[4]: Entering directory '/<>/example/check-taxo-nodes' /usr/bin/mkdir -p '/<>/debian/tmp/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c checktaxonnodes '/<>/debian/tmp/usr/bin' libtool: warning: '../../ncl/libncl.la' has not been installed in '/usr/lib/powerpc64le-linux-gnu' libtool: install: /usr/bin/install -c .libs/checktaxonnodes /<>/debian/tmp/usr/bin/checktaxonnodes make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/example/check-taxo-nodes' make[3]: Leaving directory '/<>/example/check-taxo-nodes' Making install in compressor make[3]: Entering directory '/<>/example/compressor' make[4]: Entering directory '/<>/example/compressor' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/example/compressor' make[3]: Leaving directory '/<>/example/compressor' Making install in find-unsupported-edges make[3]: Entering directory '/<>/example/find-unsupported-edges' make[4]: Entering directory '/<>/example/find-unsupported-edges' /usr/bin/mkdir -p '/<>/debian/tmp/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c findunsupportededges '/<>/debian/tmp/usr/bin' libtool: warning: '../../ncl/libncl.la' has not been installed in '/usr/lib/powerpc64le-linux-gnu' libtool: install: /usr/bin/install -c .libs/findunsupportededges /<>/debian/tmp/usr/bin/findunsupportededges make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/example/find-unsupported-edges' make[3]: Leaving directory '/<>/example/find-unsupported-edges' Making install in gapcode make[3]: Entering directory '/<>/example/gapcode' make[4]: Entering directory '/<>/example/gapcode' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/example/gapcode' make[3]: Leaving directory '/<>/example/gapcode' Making install in nclsimplest make[3]: Entering directory '/<>/example/nclsimplest' make[4]: Entering directory '/<>/example/nclsimplest' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/example/nclsimplest' make[3]: Leaving directory '/<>/example/nclsimplest' Making install in ncltest make[3]: Entering directory '/<>/example/ncltest' make[4]: Entering directory '/<>/example/ncltest' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/example/ncltest' make[3]: Leaving directory '/<>/example/ncltest' Making install in normalizer make[3]: Entering directory '/<>/example/normalizer' make[4]: Entering directory '/<>/example/normalizer' /usr/bin/mkdir -p '/<>/debian/tmp/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c NEXUSnormalizer NEXUSvalidator NCLconverter '/<>/debian/tmp/usr/bin' libtool: warning: '../../ncl/libncl.la' has not been installed in '/usr/lib/powerpc64le-linux-gnu' libtool: install: /usr/bin/install -c .libs/NEXUSnormalizer /<>/debian/tmp/usr/bin/NEXUSnormalizer libtool: warning: '../../ncl/libncl.la' has not been installed in '/usr/lib/powerpc64le-linux-gnu' libtool: install: /usr/bin/install -c .libs/NEXUSvalidator /<>/debian/tmp/usr/bin/NEXUSvalidator libtool: warning: '../../ncl/libncl.la' has not been installed in '/usr/lib/powerpc64le-linux-gnu' libtool: install: /usr/bin/install -c .libs/NCLconverter /<>/debian/tmp/usr/bin/NCLconverter make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/example/normalizer' make[3]: Leaving directory '/<>/example/normalizer' Making install in ot-subtree make[3]: Entering directory '/<>/example/ot-subtree' make[4]: Entering directory '/<>/example/ot-subtree' /usr/bin/mkdir -p '/<>/debian/tmp/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c otsubtree '/<>/debian/tmp/usr/bin' libtool: warning: '../../ncl/libncl.la' has not been installed in '/usr/lib/powerpc64le-linux-gnu' libtool: install: /usr/bin/install -c .libs/otsubtree /<>/debian/tmp/usr/bin/otsubtree make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/example/ot-subtree' make[3]: Leaving directory '/<>/example/ot-subtree' Making install in ot-tree-inspect make[3]: Entering directory '/<>/example/ot-tree-inspect' make[4]: Entering directory '/<>/example/ot-tree-inspect' /usr/bin/mkdir -p '/<>/debian/tmp/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c otTreeInspect '/<>/debian/tmp/usr/bin' libtool: warning: '../../ncl/libncl.la' has not been installed in '/usr/lib/powerpc64le-linux-gnu' libtool: install: /usr/bin/install -c .libs/otTreeInspect /<>/debian/tmp/usr/bin/otTreeInspect make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/example/ot-tree-inspect' make[3]: Leaving directory '/<>/example/ot-tree-inspect' Making install in outdeg1count make[3]: Entering directory '/<>/example/outdeg1count' make[4]: Entering directory '/<>/example/outdeg1count' /usr/bin/mkdir -p '/<>/debian/tmp/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c outdeg1count '/<>/debian/tmp/usr/bin' libtool: warning: '../../ncl/libncl.la' has not been installed in '/usr/lib/powerpc64le-linux-gnu' libtool: install: /usr/bin/install -c .libs/outdeg1count /<>/debian/tmp/usr/bin/outdeg1count make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/example/outdeg1count' make[3]: Leaving directory '/<>/example/outdeg1count' Making install in patristic make[3]: Entering directory '/<>/example/patristic' make[4]: Entering directory '/<>/example/patristic' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/example/patristic' make[3]: Leaving directory '/<>/example/patristic' Making install in phylobaseinterface make[3]: Entering directory '/<>/example/phylobaseinterface' make[4]: Entering directory '/<>/example/phylobaseinterface' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/example/phylobaseinterface' make[3]: Leaving directory '/<>/example/phylobaseinterface' Making install in polytomy-count make[3]: Entering directory '/<>/example/polytomy-count' make[4]: Entering directory '/<>/example/polytomy-count' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/example/polytomy-count' make[3]: Leaving directory '/<>/example/polytomy-count' Making install in splitsinfile make[3]: Entering directory '/<>/example/splitsinfile' make[4]: Entering directory '/<>/example/splitsinfile' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/example/splitsinfile' make[3]: Leaving directory '/<>/example/splitsinfile' Making install in subsetter make[3]: Entering directory '/<>/example/subsetter' make[4]: Entering directory '/<>/example/subsetter' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/example/subsetter' make[3]: Leaving directory '/<>/example/subsetter' Making install in translate make[3]: Entering directory '/<>/example/translate' make[4]: Entering directory '/<>/example/translate' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/example/translate' make[3]: Leaving directory '/<>/example/translate' make[3]: Entering directory '/<>/example' make[4]: Entering directory '/<>/example' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/example' make[3]: Leaving directory '/<>/example' make[2]: Leaving directory '/<>/example' Making install in test make[2]: Entering directory '/<>/test' make[3]: Entering directory '/<>/test' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/test' make[2]: Leaving directory '/<>/test' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/<>/debian/tmp/usr/lib/powerpc64le-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 nclv2.1.pc '/<>/debian/tmp/usr/lib/powerpc64le-linux-gnu/pkgconfig' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install d-shlibmove --commit \ --multiarch \ --devunversioned \ --movedev "debian/tmp/usr/include/ncl/*.h" usr/include/ncl \ --movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/powerpc64le-linux-gnu/pkgconfig \ debian/tmp/usr/lib/*/libncl.so Library package automatic movement utility set -e install -d -m 755 debian/libncl-dev/usr/lib/powerpc64le-linux-gnu install -d -m 755 debian/libncl2/usr/lib/powerpc64le-linux-gnu mv debian/tmp/usr/lib/powerpc64le-linux-gnu/libncl.a debian/libncl-dev/usr/lib/powerpc64le-linux-gnu mv debian/tmp/usr/lib/powerpc64le-linux-gnu/libncl.la debian/libncl-dev/usr/lib/powerpc64le-linux-gnu || true mv debian/tmp/usr/lib/powerpc64le-linux-gnu/libncl.so debian/libncl-dev/usr/lib/powerpc64le-linux-gnu mv /<>/debian/tmp/usr/lib/powerpc64le-linux-gnu/libncl.so.2 debian/libncl2/usr/lib/powerpc64le-linux-gnu mv /<>/debian/tmp/usr/lib/powerpc64le-linux-gnu/libncl.so.2.0.0 debian/libncl2/usr/lib/powerpc64le-linux-gnu PKGDEV=libncl-dev PKGSHL=libncl2 install -d -m 755 debian/libncl-dev/usr/include/ncl mv debian/tmp/usr/include/ncl/*.h debian/libncl-dev/usr/include/ncl install -d -m 755 debian/libncl-dev/usr/lib/powerpc64le-linux-gnu/pkgconfig mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libncl-dev/usr/lib/powerpc64le-linux-gnu/pkgconfig rm -f debian/tmp/usr/include/ncl/nxsblock.cpp make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a debugedit: debian/ncl-tools/usr/bin/NEXUSvalidator: Unknown DWARF DW_FORM_0x1f20 6a21cdccf91e4c59fef84bcfc491dfc03f1d1134 debugedit: debian/ncl-tools/usr/bin/NCLconverter: Unknown DWARF DW_FORM_0x1f21 66209f9315753f39b70bf43f8daba847871c9919 1d0aa2a1733cb63b2898c7ca6ed80ada9a16a96d debugedit: debian/ncl-tools/usr/bin/otTreeInspect: Unknown DWARF DW_FORM_0x1f20 e6a1158922c3f4e0e2c46bc426931edb883faf02 debugedit: debian/ncl-tools/usr/bin/findunsupportededges: Unknown DWARF DW_FORM_0x1f20 bb847d9616538aef8590ae07d2bdfdb5ac9a2e1f debugedit: debian/ncl-tools/usr/bin/NEXUSnormalizer: Unknown DWARF DW_FORM_0x1f20 2f265fea8efd85024d6b2319af29998938929bd8 debugedit: debian/ncl-tools/usr/bin/outdeg1count: Unknown DWARF DW_FORM_0x1f20 9682fd535ec829396707b0b17d76795c731bc9ca debugedit: debian/ncl-tools/usr/bin/otsubtree: Unknown DWARF DW_FORM_0x1f20 68cae6d5609a528f3d4ff5af92517ce400b7dce0 debugedit: debian/ncl-tools/usr/bin/checktaxonnodes: Unknown DWARF DW_FORM_0x1f20 796e7dedec0532e38c0a9b317e2f9127cd509c75 dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: Depends field of package libncl-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 153 INFO: pkgstriptranslations version 153 INFO: pkgstriptranslations version 153 pkgstriptranslations: processing libncl2 (in debian/libncl2); do_strip: , oemstrip: pkgstriptranslations: processing libncl-dev (in debian/libncl-dev); do_strip: , oemstrip: pkgstriptranslations: processing ncl-tools (in debian/ncl-tools); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libncl-dev/DEBIAN/control, package libncl-dev, directory debian/libncl-dev INFO: pkgstripfiles: waiting for lock (libncl-dev) ... pkgstripfiles: processing control file: debian/ncl-tools/DEBIAN/control, package ncl-tools, directory debian/ncl-tools Searching for duplicated docs in dependency libncl2... symlinking changelog.Debian.gz in ncl-tools to file in libncl2 pkgstripfiles: Running PNG optimization (using 4 cpus) for package ncl-tools ... pkgstripfiles: No PNG files. dpkg-deb: building package 'ncl-tools' in '../ncl-tools_2.1.21+git20210811.b1213a7-5_ppc64el.deb'. INFO: pkgstriptranslations version 153 pkgstriptranslations: processing ncl-tools-dbgsym (in debian/.debhelper/ncl-tools/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/ncl-tools/dbgsym-root/DEBIAN/control, package ncl-tools-dbgsym, directory debian/.debhelper/ncl-tools/dbgsym-root dpkg-deb: building package 'ncl-tools-dbgsym' in 'debian/.debhelper/scratch-space/build-ncl-tools/ncl-tools-dbgsym_2.1.21+git20210811.b1213a7-5_ppc64el.deb'. INFO: pkgstripfiles: waiting for lock (libncl-dev) ... Renaming ncl-tools-dbgsym_2.1.21+git20210811.b1213a7-5_ppc64el.deb to ncl-tools-dbgsym_2.1.21+git20210811.b1213a7-5_ppc64el.ddeb INFO: pkgstripfiles: waiting for lock (libncl-dev) ... INFO: pkgstripfiles: waiting for lock (libncl-dev) ... INFO: pkgstripfiles: waiting for lock (libncl-dev) ... pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libncl2/DEBIAN/control, package libncl2, directory debian/libncl2 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libncl2 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libncl2' in '../libncl2_2.1.21+git20210811.b1213a7-5_ppc64el.deb'. Searching for duplicated docs in dependency libncl2... symlinking changelog.Debian.gz in libncl-dev to file in libncl2 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libncl-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libncl-dev' in '../libncl-dev_2.1.21+git20210811.b1213a7-5_ppc64el.deb'. INFO: pkgstriptranslations version 153 pkgstriptranslations: processing libncl2-dbgsym (in debian/.debhelper/libncl2/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/libncl2/dbgsym-root/DEBIAN/control, package libncl2-dbgsym, directory debian/.debhelper/libncl2/dbgsym-root dpkg-deb: building package 'libncl2-dbgsym' in 'debian/.debhelper/scratch-space/build-libncl2/libncl2-dbgsym_2.1.21+git20210811.b1213a7-5_ppc64el.deb'. Renaming libncl2-dbgsym_2.1.21+git20210811.b1213a7-5_ppc64el.deb to libncl2-dbgsym_2.1.21+git20210811.b1213a7-5_ppc64el.ddeb dpkg-genbuildinfo --build=any -O../libncl_2.1.21+git20210811.b1213a7-5_ppc64el.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../libncl_2.1.21+git20210811.b1213a7-5_ppc64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2023-08-15T05:17:02Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libncl_2.1.21+git20210811.b1213a7-5_ppc64el.changes: ---------------------------------------------------- Format: 1.8 Date: Mon, 14 Aug 2023 15:34:47 +0200 Source: libncl Binary: libncl-dev libncl2 ncl-tools Built-For-Profiles: noudeb Architecture: ppc64el Version: 2.1.21+git20210811.b1213a7-5 Distribution: mantic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Michael R. Crusoe Description: libncl-dev - NEXUS Class Library (static lib and header files) libncl2 - NEXUS Class Library ncl-tools - tools to deal with NEXUS files Closes: 1037731 1042131 Changes: libncl (2.1.21+git20210811.b1213a7-5) unstable; urgency=medium . * Team upload. * Update symbols for gcc-13. Closes: #1037731, #1042131 Checksums-Sha1: 8cbebd16612da31bcc5bc40cad6e7431399e3f39 653706 libncl-dev_2.1.21+git20210811.b1213a7-5_ppc64el.deb c588c81818f33f2573372c6229ea09bfc831fe59 5964218 libncl2-dbgsym_2.1.21+git20210811.b1213a7-5_ppc64el.ddeb 0209e824b0998aa59e4546162676bc356b656fe7 390580 libncl2_2.1.21+git20210811.b1213a7-5_ppc64el.deb 691db153fd4d6ef50653b0d70c0913b09c29cd88 7753 libncl_2.1.21+git20210811.b1213a7-5_ppc64el.buildinfo 857c04d55e100b316dd5088b88a71c66ce15d6dc 4134546 ncl-tools-dbgsym_2.1.21+git20210811.b1213a7-5_ppc64el.ddeb 90766388ddc3578f5a1e67e397bc19fd052ca8df 192676 ncl-tools_2.1.21+git20210811.b1213a7-5_ppc64el.deb Checksums-Sha256: 037f1e6ffa9d0079f4493d1fff677e90b1257d3e8dbf70f6772c24854c244a30 653706 libncl-dev_2.1.21+git20210811.b1213a7-5_ppc64el.deb 43fe4e18fe6d36b4e82d6b569cf39dbbd4a2b640b235a12e7dfde6ab6dd26fec 5964218 libncl2-dbgsym_2.1.21+git20210811.b1213a7-5_ppc64el.ddeb 9c27f3e6b228d8df2a537c4995b3b7be7f848ccf4faf5b36910cbbcef3ebb79b 390580 libncl2_2.1.21+git20210811.b1213a7-5_ppc64el.deb 1168a91151f5afefaf534f06e1d3573cb775e256b399f7a7f5e26a1b5684be64 7753 libncl_2.1.21+git20210811.b1213a7-5_ppc64el.buildinfo ebe2ff61f97bb776a6be1411cdc401a76394da668b48366527c40832fb767442 4134546 ncl-tools-dbgsym_2.1.21+git20210811.b1213a7-5_ppc64el.ddeb 462fa706ce8e5dc7a151187f37ade7113fdb6569a97f62066464c17eb8a4e473 192676 ncl-tools_2.1.21+git20210811.b1213a7-5_ppc64el.deb Files: e9cec903fbe51e3571a3c9cd66dc5875 653706 libdevel optional libncl-dev_2.1.21+git20210811.b1213a7-5_ppc64el.deb 25dbe59107269a8493aff3a209de405c 5964218 debug optional libncl2-dbgsym_2.1.21+git20210811.b1213a7-5_ppc64el.ddeb 121d3c76d303e5a1b236a3253dd0a68b 390580 libs optional libncl2_2.1.21+git20210811.b1213a7-5_ppc64el.deb ea24d8a1bd15d2a3a2f8c3099617de81 7753 science optional libncl_2.1.21+git20210811.b1213a7-5_ppc64el.buildinfo 86d0126e530d1c552be6c0f2b45519bb 4134546 debug optional ncl-tools-dbgsym_2.1.21+git20210811.b1213a7-5_ppc64el.ddeb 5f0561e3e0417e29c07e07b19d814378 192676 science optional ncl-tools_2.1.21+git20210811.b1213a7-5_ppc64el.deb /<>/libncl_2.1.21+git20210811.b1213a7-5_ppc64el.changes.new could not be renamed to /<>/libncl_2.1.21+git20210811.b1213a7-5_ppc64el.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: libncl Binary: libncl-dev libncl2 libncl2-dbgsym ncl-tools ncl-tools-dbgsym Architecture: ppc64el Version: 2.1.21+git20210811.b1213a7-5 Checksums-Md5: e9cec903fbe51e3571a3c9cd66dc5875 653706 libncl-dev_2.1.21+git20210811.b1213a7-5_ppc64el.deb 25dbe59107269a8493aff3a209de405c 5964218 libncl2-dbgsym_2.1.21+git20210811.b1213a7-5_ppc64el.ddeb 121d3c76d303e5a1b236a3253dd0a68b 390580 libncl2_2.1.21+git20210811.b1213a7-5_ppc64el.deb 86d0126e530d1c552be6c0f2b45519bb 4134546 ncl-tools-dbgsym_2.1.21+git20210811.b1213a7-5_ppc64el.ddeb 5f0561e3e0417e29c07e07b19d814378 192676 ncl-tools_2.1.21+git20210811.b1213a7-5_ppc64el.deb Checksums-Sha1: 8cbebd16612da31bcc5bc40cad6e7431399e3f39 653706 libncl-dev_2.1.21+git20210811.b1213a7-5_ppc64el.deb c588c81818f33f2573372c6229ea09bfc831fe59 5964218 libncl2-dbgsym_2.1.21+git20210811.b1213a7-5_ppc64el.ddeb 0209e824b0998aa59e4546162676bc356b656fe7 390580 libncl2_2.1.21+git20210811.b1213a7-5_ppc64el.deb 857c04d55e100b316dd5088b88a71c66ce15d6dc 4134546 ncl-tools-dbgsym_2.1.21+git20210811.b1213a7-5_ppc64el.ddeb 90766388ddc3578f5a1e67e397bc19fd052ca8df 192676 ncl-tools_2.1.21+git20210811.b1213a7-5_ppc64el.deb Checksums-Sha256: 037f1e6ffa9d0079f4493d1fff677e90b1257d3e8dbf70f6772c24854c244a30 653706 libncl-dev_2.1.21+git20210811.b1213a7-5_ppc64el.deb 43fe4e18fe6d36b4e82d6b569cf39dbbd4a2b640b235a12e7dfde6ab6dd26fec 5964218 libncl2-dbgsym_2.1.21+git20210811.b1213a7-5_ppc64el.ddeb 9c27f3e6b228d8df2a537c4995b3b7be7f848ccf4faf5b36910cbbcef3ebb79b 390580 libncl2_2.1.21+git20210811.b1213a7-5_ppc64el.deb ebe2ff61f97bb776a6be1411cdc401a76394da668b48366527c40832fb767442 4134546 ncl-tools-dbgsym_2.1.21+git20210811.b1213a7-5_ppc64el.ddeb 462fa706ce8e5dc7a151187f37ade7113fdb6569a97f62066464c17eb8a4e473 192676 ncl-tools_2.1.21+git20210811.b1213a7-5_ppc64el.deb Build-Origin: Ubuntu Build-Architecture: ppc64el Build-Date: Tue, 15 Aug 2023 05:17:02 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: adduser (= 3.137ubuntu1), apt (= 2.7.3), autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-13), autotools-dev (= 20220109.1), base-files (= 13ubuntu1), base-passwd (= 3.6.1), bash (= 5.2.15-2ubuntu1), binutils (= 2.41-4ubuntu1), binutils-common (= 2.41-4ubuntu1), binutils-powerpc64le-linux-gnu (= 2.41-4ubuntu1), bsdextrautils (= 2.38.1-5ubuntu2), bsdutils (= 1:2.38.1-5ubuntu2), build-essential (= 12.10ubuntu1), bzip2 (= 1.0.8-5build1), coreutils (= 9.1-1ubuntu2), cpp (= 4:13.2.0-1ubuntu1), cpp-12 (= 12.3.0-7ubuntu2), cpp-13 (= 13.2.0-2ubuntu1), d-shlibs (= 0.104), dash (= 0.5.12-6ubuntu1), debconf (= 1.5.82), debhelper (= 13.11.5ubuntu1), debianutils (= 5.8-1), debugedit (= 1:5.0-5), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.8-4), dpkg (= 1.21.22ubuntu1), dpkg-dev (= 1.21.22ubuntu1), dwz (= 0.15-1), file (= 1:5.44-3), findutils (= 4.9.0-5), g++ (= 4:13.2.0-1ubuntu1), g++-13 (= 13.2.0-2ubuntu1), gcc (= 4:13.2.0-1ubuntu1), gcc-12 (= 12.3.0-7ubuntu2), gcc-12-base (= 12.3.0-7ubuntu2), gcc-13 (= 13.2.0-2ubuntu1), gcc-13-base (= 13.2.0-2ubuntu1), gettext (= 0.21-13), gettext-base (= 0.21-13), gpgv (= 2.2.40-1.1ubuntu1), grep (= 3.11-2), groff-base (= 1.23.0-2), gzip (= 1.12-1ubuntu1), hostname (= 3.23+nmu1ubuntu1), init-system-helpers (= 1.65.2ubuntu1), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.1-3), libapt-pkg6.0 (= 2.7.3), libarchive-zip-perl (= 1.68-1), libasan8 (= 13.2.0-2ubuntu1), libatomic1 (= 13.2.0-2ubuntu1), libattr1 (= 1:2.5.1-4), libaudit-common (= 1:3.1.1-1), libaudit1 (= 1:3.1.1-1), libbinutils (= 2.41-4ubuntu1), libblkid1 (= 2.38.1-5ubuntu2), libbz2-1.0 (= 1.0.8-5build1), libc-bin (= 2.38-1ubuntu3), libc-dev-bin (= 2.38-1ubuntu3), libc6 (= 2.38-1ubuntu3), libc6-dev (= 2.38-1ubuntu3), libcap-ng0 (= 0.8.3-1build2), libcap2 (= 1:2.66-4ubuntu1), libcc1-0 (= 13.2.0-2ubuntu1), libcom-err2 (= 1.47.0-2ubuntu1), libcrypt-dev (= 1:4.4.36-2), libcrypt1 (= 1:4.4.36-2), libctf-nobfd0 (= 2.41-4ubuntu1), libctf0 (= 2.41-4ubuntu1), libdb5.3 (= 5.3.28+dfsg2-2), libdebconfclient0 (= 0.270ubuntu1), libdebhelper-perl (= 13.11.5ubuntu1), libdpkg-perl (= 1.21.22ubuntu1), libdw1 (= 0.189-4), libelf1 (= 0.189-4), libexpat1 (= 2.5.0-2), libffi8 (= 3.4.4-1), libfile-stripnondeterminism-perl (= 1.13.1-1), libgcc-12-dev (= 12.3.0-7ubuntu2), libgcc-13-dev (= 13.2.0-2ubuntu1), libgcc-s1 (= 13.2.0-2ubuntu1), libgcrypt20 (= 1.10.2-2ubuntu1), libgdbm-compat4 (= 1.23-3), libgdbm6 (= 1.23-3), libgmp10 (= 2:6.3.0+dfsg-2ubuntu3), libgnutls30 (= 3.8.1-3ubuntu1), libgomp1 (= 13.2.0-2ubuntu1), libgpg-error0 (= 1.46-1), libgssapi-krb5-2 (= 1.20.1-2), libhogweed6 (= 3.9.1-2), libicu72 (= 72.1-3ubuntu2), libidn2-0 (= 2.3.4-1), libisl23 (= 0.26-3), libitm1 (= 13.2.0-2ubuntu1), libjansson4 (= 2.14-2), libk5crypto3 (= 1.20.1-2), libkeyutils1 (= 1.6.3-2), libkrb5-3 (= 1.20.1-2), libkrb5support0 (= 1.20.1-2), liblsan0 (= 13.2.0-2ubuntu1), liblz4-1 (= 1.9.4-1), liblzma5 (= 5.4.1-0.2), libmagic-mgc (= 1:5.44-3), libmagic1 (= 1:5.44-3), libmd0 (= 1.1.0-1), libmount1 (= 2.38.1-5ubuntu2), libmpc3 (= 1.3.1-1), libmpfr6 (= 4.2.0-1), libncursesw6 (= 6.4+20230625-2), libnettle8 (= 3.9.1-2), libnsl-dev (= 1.3.0-2build2), libnsl2 (= 1.3.0-2build2), libp11-kit0 (= 0.24.1-2ubuntu1), libpam-modules (= 1.5.2-6ubuntu1), libpam-modules-bin (= 1.5.2-6ubuntu1), libpam-runtime (= 1.5.2-6ubuntu1), libpam0g (= 1.5.2-6ubuntu1), libpcre2-8-0 (= 10.42-2), libperl5.36 (= 5.36.0-7ubuntu1), libpipeline1 (= 1.5.7-1), libpython3-stdlib (= 3.11.4-5), libpython3.11-minimal (= 3.11.4-1), libpython3.11-stdlib (= 3.11.4-1), libquadmath0 (= 13.2.0-2ubuntu1), libreadline8 (= 8.2-1.3), libseccomp2 (= 2.5.4-1ubuntu3), libselinux1 (= 3.5-1), libsemanage-common (= 3.5-1), libsemanage2 (= 3.5-1), libsepol2 (= 3.5-1), libsframe1 (= 2.41-4ubuntu1), libsmartcols1 (= 2.38.1-5ubuntu2), libsqlite3-0 (= 3.42.0-1), libssl3 (= 3.0.10-1ubuntu2), libstdc++-13-dev (= 13.2.0-2ubuntu1), libstdc++6 (= 13.2.0-2ubuntu1), libsub-override-perl (= 0.09-4), libsystemd0 (= 253.5-1ubuntu2), libtasn1-6 (= 4.19.0-3), libtinfo6 (= 6.4+20230625-2), libtirpc-common (= 1.3.3+ds-1), libtirpc-dev (= 1.3.3+ds-1), libtirpc3 (= 1.3.3+ds-1), libtool (= 2.4.7-7), libtsan2 (= 13.2.0-2ubuntu1), libubsan1 (= 13.2.0-2ubuntu1), libuchardet0 (= 0.0.7-1build2), libudev1 (= 253.5-1ubuntu2), libunistring2 (= 1.0-2), libuuid1 (= 2.38.1-5ubuntu2), libxml2 (= 2.9.14+dfsg-1.3), libxxhash0 (= 0.8.1-1), libzstd1 (= 1.5.5+dfsg2-1ubuntu2), linux-libc-dev (= 6.3.0-7.7), login (= 1:4.13+dfsg1-1ubuntu1), lto-disabled-list (= 42), m4 (= 1.4.19-3), make (= 4.3-4.1build1), man-db (= 2.11.2-3), mawk (= 1.3.4.20230730-1), media-types (= 10.1.0), ncurses-base (= 6.4+20230625-2), ncurses-bin (= 6.4+20230625-2), passwd (= 1:4.13+dfsg1-1ubuntu1), patch (= 2.7.6-7build2), perl (= 5.36.0-7ubuntu1), perl-base (= 5.36.0-7ubuntu1), perl-modules-5.36 (= 5.36.0-7ubuntu1), po-debconf (= 1.0.21+nmu1), python3 (= 3.11.4-5), python3-minimal (= 3.11.4-5), python3.11 (= 3.11.4-1), python3.11-minimal (= 3.11.4-1), readline-common (= 8.2-1.3), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.9-1), sensible-utils (= 0.0.20), sysvinit-utils (= 3.07-1ubuntu1), tar (= 1.34+dfsg-1.2ubuntu1), ubuntu-keyring (= 2021.03.26), util-linux (= 2.38.1-5ubuntu2), util-linux-extra (= 2.38.1-5ubuntu2), xz-utils (= 5.4.1-0.2), zlib1g (= 1:1.2.13.dfsg-1ubuntu5) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1692020087" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libncl-dev_2.1.21+git20210811.b1213a7-5_ppc64el.deb --------------------------------------------------- new Debian package, version 2.0. size 653706 bytes: control archive=1459 bytes. 804 bytes, 21 lines control 1899 bytes, 28 lines md5sums Package: libncl-dev Source: libncl Version: 2.1.21+git20210811.b1213a7-5 Architecture: ppc64el Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 4306 Depends: libncl2 (= 2.1.21+git20210811.b1213a7-5) Section: libdevel Priority: optional Multi-Arch: same Homepage: https://github.com/mtholder/ncl Description: NEXUS Class Library (static lib and header files) The NEXUS Class Library is a C++ library for parsing NEXUS files. . The NEXUS file format is widely used in bioinformatics. Several popular phylogenetic programs such as Paup, MrBayes, Mesquite, and MacClade use this format. . This package contains the static library and header files of the NEXUS library. drwxr-xr-x root/root 0 2023-08-14 13:34 ./ drwxr-xr-x root/root 0 2023-08-14 13:34 ./usr/ drwxr-xr-x root/root 0 2023-08-14 13:34 ./usr/include/ drwxr-xr-x root/root 0 2023-08-14 13:34 ./usr/include/ncl/ -rw-r--r-- root/root 2384 2023-08-14 13:34 ./usr/include/ncl/ncl.h -rw-r--r-- root/root 5928 2023-08-14 13:34 ./usr/include/ncl/nxsallocatematrix.h -rw-r--r-- root/root 14934 2023-08-14 13:34 ./usr/include/ncl/nxsassumptionsblock.h -rw-r--r-- root/root 15451 2023-08-14 13:34 ./usr/include/ncl/nxsblock.h -rw-r--r-- root/root 3814 2023-08-14 13:34 ./usr/include/ncl/nxscdiscretematrix.h -rw-r--r-- root/root 77971 2023-08-14 13:34 ./usr/include/ncl/nxscharactersblock.h -rw-r--r-- root/root 11249 2023-08-14 13:34 ./usr/include/ncl/nxscxxdiscretematrix.h -rw-r--r-- root/root 2145 2023-08-14 13:34 ./usr/include/ncl/nxsdatablock.h -rw-r--r-- root/root 4059 2023-08-14 13:34 ./usr/include/ncl/nxsdefs.h -rw-r--r-- root/root 2098 2023-08-14 13:34 ./usr/include/ncl/nxsdiscretedatum.h -rw-r--r-- root/root 1328 2023-08-14 13:34 ./usr/include/ncl/nxsdistancedatum.h -rw-r--r-- root/root 7403 2023-08-14 13:34 ./usr/include/ncl/nxsdistancesblock.h -rw-r--r-- root/root 3060 2023-08-14 13:34 ./usr/include/ncl/nxsexception.h -rw-r--r-- root/root 10912 2023-08-14 13:34 ./usr/include/ncl/nxsmultiformat.h -rw-r--r-- root/root 30636 2023-08-14 13:34 ./usr/include/ncl/nxspublicblocks.h -rw-r--r-- root/root 26955 2023-08-14 13:34 ./usr/include/ncl/nxsreader.h -rw-r--r-- root/root 4284 2023-08-14 13:34 ./usr/include/ncl/nxssetreader.h -rw-r--r-- root/root 21693 2023-08-14 13:34 ./usr/include/ncl/nxsstring.h -rw-r--r-- root/root 4646 2023-08-14 13:34 ./usr/include/ncl/nxstaxaassociationblock.h -rw-r--r-- root/root 16886 2023-08-14 13:34 ./usr/include/ncl/nxstaxablock.h -rw-r--r-- root/root 31363 2023-08-14 13:34 ./usr/include/ncl/nxstoken.h -rw-r--r-- root/root 35765 2023-08-14 13:34 ./usr/include/ncl/nxstreesblock.h -rw-r--r-- root/root 10644 2023-08-14 13:34 ./usr/include/ncl/nxsunalignedblock.h -rw-r--r-- root/root 9167 2023-08-14 13:34 ./usr/include/ncl/nxsutilcopy.h drwxr-xr-x root/root 0 2023-08-14 13:34 ./usr/lib/ drwxr-xr-x root/root 0 2023-08-14 13:34 ./usr/lib/powerpc64le-linux-gnu/ -rw-r--r-- root/root 4025012 2023-08-14 13:34 ./usr/lib/powerpc64le-linux-gnu/libncl.a -rw-r--r-- root/root 940 2023-08-14 13:34 ./usr/lib/powerpc64le-linux-gnu/libncl.la lrwxrwxrwx root/root 0 2023-08-14 13:34 ./usr/lib/powerpc64le-linux-gnu/libncl.so -> libncl.so.2.0.0 drwxr-xr-x root/root 0 2023-08-14 13:34 ./usr/lib/powerpc64le-linux-gnu/pkgconfig/ -rw-r--r-- root/root 310 2023-08-14 13:34 ./usr/lib/powerpc64le-linux-gnu/pkgconfig/nclv2.1.pc drwxr-xr-x root/root 0 2023-08-14 13:34 ./usr/share/ drwxr-xr-x root/root 0 2023-08-14 13:34 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-08-14 13:34 ./usr/share/doc/libncl-dev/ lrwxrwxrwx root/root 0 2023-08-14 13:34 ./usr/share/doc/libncl-dev/changelog.Debian.gz -> ../libncl2/changelog.Debian.gz -rw-r--r-- root/root 1157 2023-08-14 13:34 ./usr/share/doc/libncl-dev/copyright libncl2_2.1.21+git20210811.b1213a7-5_ppc64el.deb ------------------------------------------------ new Debian package, version 2.0. size 390580 bytes: control archive=862 bytes. 754 bytes, 20 lines control 222 bytes, 3 lines md5sums 49 bytes, 1 lines shlibs 75 bytes, 2 lines triggers Package: libncl2 Source: libncl Version: 2.1.21+git20210811.b1213a7-5 Architecture: ppc64el Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1237 Depends: libc6 (>= 2.38), libgcc-s1 (>= 3.3.1), libstdc++6 (>= 13.1) Section: libs Priority: optional Multi-Arch: same Homepage: https://github.com/mtholder/ncl Description: NEXUS Class Library The NEXUS Class Library is a C++ library for parsing NEXUS files. . The NEXUS file format is widely used in bioinformatics. Several popular phylogenetic programs such as Paup, MrBayes, Mesquite, and MacClade use this format. . This package contains the dynamic NEXUS library. drwxr-xr-x root/root 0 2023-08-14 13:34 ./ drwxr-xr-x root/root 0 2023-08-14 13:34 ./usr/ drwxr-xr-x root/root 0 2023-08-14 13:34 ./usr/lib/ drwxr-xr-x root/root 0 2023-08-14 13:34 ./usr/lib/powerpc64le-linux-gnu/ lrwxrwxrwx root/root 0 2023-08-14 13:34 ./usr/lib/powerpc64le-linux-gnu/libncl.so.2 -> libncl.so.2.0.0 -rw-r--r-- root/root 1252008 2023-08-14 13:34 ./usr/lib/powerpc64le-linux-gnu/libncl.so.2.0.0 drwxr-xr-x root/root 0 2023-08-14 13:34 ./usr/share/ drwxr-xr-x root/root 0 2023-08-14 13:34 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-08-14 13:34 ./usr/share/doc/libncl2/ -rw-r--r-- root/root 850 2023-08-14 13:34 ./usr/share/doc/libncl2/changelog.Debian.gz -rw-r--r-- root/root 1157 2023-08-14 13:34 ./usr/share/doc/libncl2/copyright ncl-tools_2.1.21+git20210811.b1213a7-5_ppc64el.deb -------------------------------------------------- new Debian package, version 2.0. size 192676 bytes: control archive=1007 bytes. 741 bytes, 17 lines control 740 bytes, 12 lines md5sums Package: ncl-tools Source: libncl Version: 2.1.21+git20210811.b1213a7-5 Architecture: ppc64el Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1258 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.3.1), libncl2 (>= 2.1.21+git20210811.b1213a7), libstdc++6 (>= 13.1) Section: science Priority: optional Homepage: https://github.com/mtholder/ncl Description: tools to deal with NEXUS files The NEXUS Class Library is a C++ library for parsing NEXUS files. . The NEXUS file format is widely used in bioinformatics. Several popular phylogenetic programs such as Paup, MrBayes, Mesquite, and MacClade use this format. drwxr-xr-x root/root 0 2023-08-14 13:34 ./ drwxr-xr-x root/root 0 2023-08-14 13:34 ./usr/ drwxr-xr-x root/root 0 2023-08-14 13:34 ./usr/bin/ -rwxr-xr-x root/root 264648 2023-08-14 13:34 ./usr/bin/NCLconverter -rwxr-xr-x root/root 133424 2023-08-14 13:34 ./usr/bin/NEXUSnormalizer -rwxr-xr-x root/root 133416 2023-08-14 13:34 ./usr/bin/NEXUSvalidator -rwxr-xr-x root/root 133408 2023-08-14 13:34 ./usr/bin/checktaxonnodes -rwxr-xr-x root/root 198952 2023-08-14 13:34 ./usr/bin/findunsupportededges -rwxr-xr-x root/root 133416 2023-08-14 13:34 ./usr/bin/otTreeInspect -rwxr-xr-x root/root 133408 2023-08-14 13:34 ./usr/bin/otsubtree -rwxr-xr-x root/root 133408 2023-08-14 13:34 ./usr/bin/outdeg1count drwxr-xr-x root/root 0 2023-08-14 13:34 ./usr/share/ drwxr-xr-x root/root 0 2023-08-14 13:34 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-08-14 13:34 ./usr/share/doc/ncl-tools/ lrwxrwxrwx root/root 0 2023-08-14 13:34 ./usr/share/doc/ncl-tools/changelog.Debian.gz -> ../libncl2/changelog.Debian.gz -rw-r--r-- root/root 1157 2023-08-14 13:34 ./usr/share/doc/ncl-tools/copyright drwxr-xr-x root/root 0 2023-08-14 13:34 ./usr/share/man/ drwxr-xr-x root/root 0 2023-08-14 13:34 ./usr/share/man/man1/ -rw-r--r-- root/root 1674 2023-08-14 13:34 ./usr/share/man/man1/NCLconverter.1.gz -rw-r--r-- root/root 1094 2023-08-14 13:34 ./usr/share/man/man1/NEXUSnormalizer.1.gz -rw-r--r-- root/root 1054 2023-08-14 13:34 ./usr/share/man/man1/NEXUSvalidator.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: ppc64el Build Type: any Build-Space: 756020 Build-Time: 265 Distribution: mantic-proposed Host Architecture: ppc64el Install-Time: 31 Job: libncl_2.1.21+git20210811.b1213a7-5.dsc Machine Architecture: ppc64el Package: libncl Package-Time: 296 Source-Version: 2.1.21+git20210811.b1213a7-5 Space: 756020 Status: successful Version: 2.1.21+git20210811.b1213a7-5 -------------------------------------------------------------------------------- Finished at 2023-08-15T05:17:02Z Build needed 00:04:56, 756020k disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=mantic --arch=ppc64el PACKAGEBUILD-26507358 Scanning for processes to kill in build PACKAGEBUILD-26507358