https://launchpad.net/ubuntu/+source/libncl/2.1.21+git20190531.feceb81-1/+build/17445634 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-051 4.4.0-159-generic #187-Ubuntu SMP Thu Aug 1 16:29:27 UTC 2019 aarch64 Buildd toolchain package versions: launchpad-buildd_176 python-lpbuildd_176 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.6 dpkg-dev_1.18.4ubuntu1.6 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 20 Aug 17:10:40 ntpdate[1926]: adjust time server 10.211.37.1 offset -0.033789 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=eoan --arch=armhf PACKAGEBUILD-17445634 --image-type chroot /home/buildd/filecache-default/a8e076447bc9c859868a26138221e631724b6c90 Creating target for build PACKAGEBUILD-17445634 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=eoan --arch=armhf PACKAGEBUILD-17445634 Starting target for build PACKAGEBUILD-17445634 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=eoan --arch=armhf PACKAGEBUILD-17445634 'deb http://ftpmaster.internal/ubuntu eoan main universe' 'deb http://ftpmaster.internal/ubuntu eoan-security main universe' 'deb http://ftpmaster.internal/ubuntu eoan-updates main universe' 'deb http://ftpmaster.internal/ubuntu eoan-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-17445634 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=eoan --arch=armhf PACKAGEBUILD-17445634 Updating target for build PACKAGEBUILD-17445634 Get:1 http://ftpmaster.internal/ubuntu eoan InRelease [255 kB] Get:2 http://ftpmaster.internal/ubuntu eoan-security InRelease [79.7 kB] Get:3 http://ftpmaster.internal/ubuntu eoan-updates InRelease [79.7 kB] Get:4 http://ftpmaster.internal/ubuntu eoan-proposed InRelease [107 kB] Get:5 http://ftpmaster.internal/ubuntu eoan/main armhf Packages [927 kB] Get:6 http://ftpmaster.internal/ubuntu eoan/main Translation-en [502 kB] Get:7 http://ftpmaster.internal/ubuntu eoan/universe armhf Packages [8727 kB] Get:8 http://ftpmaster.internal/ubuntu eoan/universe Translation-en [5296 kB] Get:9 http://ftpmaster.internal/ubuntu eoan-proposed/main armhf Packages [107 kB] Get:10 http://ftpmaster.internal/ubuntu eoan-proposed/main Translation-en [53.6 kB] Get:11 http://ftpmaster.internal/ubuntu eoan-proposed/universe armhf Packages [677 kB] Get:12 http://ftpmaster.internal/ubuntu eoan-proposed/universe Translation-en [383 kB] Fetched 17.2 MB in 10s (1696 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: g++-8 libapt-pkg5.0 libisl19 libjson-c3 libreadline7 libstdc++-8-dev Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: cpp-9 g++-9 gcc-9 gcc-9-base libapt-pkg5.90 libgcc-9-dev libisl21 libjson-c4 libpcre2-8-0 libreadline8 libstdc++-9-dev The following packages will be upgraded: adduser advancecomp apt base-files base-passwd bash binutils binutils-arm-linux-gnueabihf binutils-common bsdutils build-essential bzip2 ca-certificates coreutils cpp cpp-8 dash debconf debianutils diffutils dmsetup dpkg dpkg-dev e2fslibs e2fsprogs fdisk findutils g++ g++-8 gcc gcc-8 gcc-8-base gpg gpg-agent gpgconf gpgv grep gzip init init-system-helpers libacl1 libapparmor1 libargon2-1 libasan5 libassuan0 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcom-err2 libcomerr2 libcryptsetup12 libdb5.3 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libext2fs2 libfdisk1 libgcc-8-dev libgcc1 libgcrypt20 libgdbm-compat4 libgdbm6 libgnutls30 libgomp1 libgpg-error0 libhogweed4 libidn11 libidn2-0 libkmod2 liblockfile-bin liblockfile1 liblz4-1 liblzma5 libmount1 libmpfr6 libncurses6 libncursesw6 libnettle6 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre3 libperl5.28 libpng16-16 libprocps7 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libslang2 libsmartcols1 libsqlite3-0 libss2 libssl1.1 libstdc++-8-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo6 libubsan1 libudev1 libunistring2 libuuid1 libzstd1 linux-libc-dev login lsb-base mount multiarch-support ncurses-base ncurses-bin openssl optipng passwd patch perl perl-base perl-modules-5.28 pinentry-curses pkgbinarymangler procps readline-common sed systemd systemd-sysv sysvinit-utils tar tzdata util-linux xz-utils zlib1g 145 upgraded, 11 newly installed, 0 to remove and 0 not upgraded. Need to get 92.4 MB of archives. After this operation, 81.7 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu eoan/main armhf libc6-dev armhf 2.29-0ubuntu3 [1911 kB] Get:2 http://ftpmaster.internal/ubuntu eoan/main armhf libc-dev-bin armhf 2.29-0ubuntu3 [59.3 kB] Get:3 http://ftpmaster.internal/ubuntu eoan-proposed/main armhf linux-libc-dev armhf 5.2.0-13.14 [1066 kB] Get:4 http://ftpmaster.internal/ubuntu eoan/main armhf libc6 armhf 2.29-0ubuntu3 [2132 kB] Get:5 http://ftpmaster.internal/ubuntu eoan/main armhf libc-bin armhf 2.29-0ubuntu3 [471 kB] Get:6 http://ftpmaster.internal/ubuntu eoan/main armhf gcc-9-base armhf 9.2.1-2ubuntu1 [19.3 kB] Get:7 http://ftpmaster.internal/ubuntu eoan/main armhf libgcc1 armhf 1:9.2.1-2ubuntu1 [37.4 kB] Get:8 http://ftpmaster.internal/ubuntu eoan/main armhf base-files armhf 10.2ubuntu4 [60.1 kB] Get:9 http://ftpmaster.internal/ubuntu eoan/main armhf debianutils armhf 4.8.6.3 [84.3 kB] Get:10 http://ftpmaster.internal/ubuntu eoan/main armhf bash armhf 5.0-4ubuntu1 [572 kB] Get:11 http://ftpmaster.internal/ubuntu eoan/main armhf bsdutils armhf 1:2.34-0.1ubuntu1 [58.7 kB] Get:12 http://ftpmaster.internal/ubuntu eoan/main armhf coreutils armhf 8.30-3ubuntu1 [1125 kB] Get:13 http://ftpmaster.internal/ubuntu eoan-proposed/main armhf lsb-base all 11.0.1ubuntu1 [12.6 kB] Get:14 http://ftpmaster.internal/ubuntu eoan/main armhf tar armhf 1.30+dfsg-6 [219 kB] Get:15 http://ftpmaster.internal/ubuntu eoan/main armhf dpkg armhf 1.19.7ubuntu1 [1086 kB] Get:16 http://ftpmaster.internal/ubuntu eoan/main armhf libperl5.28 armhf 5.28.1-6 [3163 kB] Get:17 http://ftpmaster.internal/ubuntu eoan/main armhf perl armhf 5.28.1-6 [204 kB] Get:18 http://ftpmaster.internal/ubuntu eoan/main armhf perl-base armhf 5.28.1-6 [1398 kB] Get:19 http://ftpmaster.internal/ubuntu eoan/main armhf perl-modules-5.28 all 5.28.1-6 [2818 kB] Get:20 http://ftpmaster.internal/ubuntu eoan/main armhf bzip2 armhf 1.0.6-9.2 [32.4 kB] Get:21 http://ftpmaster.internal/ubuntu eoan/main armhf libbz2-1.0 armhf 1.0.6-9.2 [30.9 kB] Get:22 http://ftpmaster.internal/ubuntu eoan/main armhf libdb5.3 armhf 5.3.28+dfsg1-0.6ubuntu1 [590 kB] Get:23 http://ftpmaster.internal/ubuntu eoan/main armhf libgdbm6 armhf 1.18.1-4 [24.4 kB] Get:24 http://ftpmaster.internal/ubuntu eoan/main armhf libgdbm-compat4 armhf 1.18.1-4 [5788 B] Get:25 http://ftpmaster.internal/ubuntu eoan-proposed/main armhf zlib1g armhf 1:1.2.11.dfsg-1ubuntu3 [48.6 kB] Get:26 http://ftpmaster.internal/ubuntu eoan/main armhf debconf all 1.5.73 [122 kB] Get:27 http://ftpmaster.internal/ubuntu eoan/main armhf dash armhf 0.5.10.2-6 [78.9 kB] Get:28 http://ftpmaster.internal/ubuntu eoan/main armhf diffutils armhf 1:3.7-3 [180 kB] Get:29 http://ftpmaster.internal/ubuntu eoan/main armhf findutils armhf 4.6.0+git+20190209-2ubuntu1 [307 kB] Get:30 http://ftpmaster.internal/ubuntu eoan/main armhf grep armhf 3.3-1 [138 kB] Get:31 http://ftpmaster.internal/ubuntu eoan/main armhf gzip armhf 1.10-0ubuntu2 [91.1 kB] Get:32 http://ftpmaster.internal/ubuntu eoan/main armhf libblkid1 armhf 2.34-0.1ubuntu1 [125 kB] Get:33 http://ftpmaster.internal/ubuntu eoan/main armhf libpcre2-8-0 armhf 10.32-5 [158 kB] Get:34 http://ftpmaster.internal/ubuntu eoan/main armhf libselinux1 armhf 2.9-2 [60.7 kB] Get:35 http://ftpmaster.internal/ubuntu eoan/main armhf libmount1 armhf 2.34-0.1ubuntu1 [135 kB] Get:36 http://ftpmaster.internal/ubuntu eoan/main armhf libsmartcols1 armhf 2.34-0.1ubuntu1 [89.3 kB] Get:37 http://ftpmaster.internal/ubuntu eoan/main armhf libuuid1 armhf 2.34-0.1ubuntu1 [19.9 kB] Get:38 http://ftpmaster.internal/ubuntu eoan/main armhf libfdisk1 armhf 2.34-0.1ubuntu1 [163 kB] Get:39 http://ftpmaster.internal/ubuntu eoan/main armhf libncurses6 armhf 6.1+20190803-1ubuntu1 [79.6 kB] Get:40 http://ftpmaster.internal/ubuntu eoan/main armhf libtinfo6 armhf 6.1+20190803-1ubuntu1 [72.4 kB] Get:41 http://ftpmaster.internal/ubuntu eoan/main armhf libncursesw6 armhf 6.1+20190803-1ubuntu1 [106 kB] Get:42 http://ftpmaster.internal/ubuntu eoan/main armhf fdisk armhf 2.34-0.1ubuntu1 [109 kB] Get:43 http://ftpmaster.internal/ubuntu eoan/main armhf login armhf 1:4.5-1.1ubuntu2 [261 kB] Get:44 http://ftpmaster.internal/ubuntu eoan/main armhf util-linux armhf 2.34-0.1ubuntu1 [959 kB] Get:45 http://ftpmaster.internal/ubuntu eoan/main armhf ncurses-bin armhf 6.1+20190803-1ubuntu1 [163 kB] Get:46 http://ftpmaster.internal/ubuntu eoan/main armhf sed armhf 4.7-1 [181 kB] Get:47 http://ftpmaster.internal/ubuntu eoan/main armhf libdebconfclient0 armhf 0.249ubuntu1 [5868 B] Get:48 http://ftpmaster.internal/ubuntu eoan/main armhf base-passwd armhf 3.5.46 [45.9 kB] Get:49 http://ftpmaster.internal/ubuntu eoan/main armhf init-system-helpers all 1.57 [38.3 kB] Get:50 http://ftpmaster.internal/ubuntu eoan/main armhf ncurses-base all 6.1+20190803-1ubuntu1 [17.7 kB] Get:51 http://ftpmaster.internal/ubuntu eoan/main armhf sysvinit-utils armhf 2.95-5ubuntu2 [19.1 kB] Get:52 http://ftpmaster.internal/ubuntu eoan/main armhf libstdc++6 armhf 9.2.1-2ubuntu1 [451 kB] Get:53 http://ftpmaster.internal/ubuntu eoan/main armhf liblz4-1 armhf 1.9.1-1 [51.2 kB] Get:54 http://ftpmaster.internal/ubuntu eoan/main armhf liblzma5 armhf 5.2.4-1 [84.6 kB] Get:55 http://ftpmaster.internal/ubuntu eoan/main armhf libtasn1-6 armhf 4.14-2 [32.9 kB] Get:56 http://ftpmaster.internal/ubuntu eoan/main armhf libnettle6 armhf 3.4.1-1 [123 kB] Get:57 http://ftpmaster.internal/ubuntu eoan/main armhf libhogweed4 armhf 3.4.1-1 [129 kB] Get:58 http://ftpmaster.internal/ubuntu eoan/main armhf libunistring2 armhf 0.9.10-2 [364 kB] Get:59 http://ftpmaster.internal/ubuntu eoan/main armhf libidn2-0 armhf 2.2.0-1 [47.7 kB] Get:60 http://ftpmaster.internal/ubuntu eoan/main armhf libp11-kit0 armhf 0.23.16.1-2 [167 kB] Get:61 http://ftpmaster.internal/ubuntu eoan/main armhf libgnutls30 armhf 3.6.9-4 [735 kB] Get:62 http://ftpmaster.internal/ubuntu eoan/main armhf systemd-sysv armhf 240-6ubuntu9 [9380 B] Get:63 http://ftpmaster.internal/ubuntu eoan/main armhf libacl1 armhf 2.2.53-4 [15.8 kB] Get:64 http://ftpmaster.internal/ubuntu eoan/main armhf libapparmor1 armhf 2.13.2-9ubuntu7 [29.4 kB] Get:65 http://ftpmaster.internal/ubuntu eoan/main armhf libaudit-common all 1:2.8.5-2ubuntu1 [4084 B] Get:66 http://ftpmaster.internal/ubuntu eoan/main armhf libcap-ng0 armhf 0.7.9-2 [9656 B] Get:67 http://ftpmaster.internal/ubuntu eoan/main armhf libaudit1 armhf 1:2.8.5-2ubuntu1 [35.9 kB] Get:68 http://ftpmaster.internal/ubuntu eoan/main armhf libcap2 armhf 1:2.25-2 [12.1 kB] Get:69 http://ftpmaster.internal/ubuntu eoan/main armhf libjson-c4 armhf 0.13.1+dfsg-4 [25.5 kB] Get:70 http://ftpmaster.internal/ubuntu eoan/main armhf libargon2-1 armhf 0~20171227-0.2 [20.0 kB] Get:71 http://ftpmaster.internal/ubuntu eoan/main armhf libudev1 armhf 240-6ubuntu9 [57.8 kB] Get:72 http://ftpmaster.internal/ubuntu eoan/main armhf libdevmapper1.02.1 armhf 2:1.02.155-2ubuntu5 [118 kB] Get:73 http://ftpmaster.internal/ubuntu eoan-proposed/main armhf libssl1.1 armhf 1.1.1c-1ubuntu4 [1077 kB] Get:74 http://ftpmaster.internal/ubuntu eoan-proposed/main armhf libcryptsetup12 armhf 2:2.2.0-1ubuntu1 [164 kB] Get:75 http://ftpmaster.internal/ubuntu eoan/main armhf libgpg-error0 armhf 1.36-7 [49.8 kB] Get:76 http://ftpmaster.internal/ubuntu eoan/main armhf libidn11 armhf 1.33-2.2ubuntu2 [43.1 kB] Get:77 http://ftpmaster.internal/ubuntu eoan/main armhf libkmod2 armhf 26-1ubuntu1 [36.5 kB] Get:78 http://ftpmaster.internal/ubuntu eoan/main armhf libpam0g armhf 1.3.1-5ubuntu1 [50.5 kB] Get:79 http://ftpmaster.internal/ubuntu eoan/main armhf libseccomp2 armhf 2.4.1-0ubuntu0.19.10.3 [30.9 kB] Get:80 http://ftpmaster.internal/ubuntu eoan/main armhf mount armhf 2.34-0.1ubuntu1 [108 kB] Get:81 http://ftpmaster.internal/ubuntu eoan/main armhf libsepol1 armhf 2.9-2 [222 kB] Get:82 http://ftpmaster.internal/ubuntu eoan/main armhf libsemanage-common all 2.9-3 [9760 B] Get:83 http://ftpmaster.internal/ubuntu eoan/main armhf libsemanage1 armhf 2.9-3 [73.8 kB] Get:84 http://ftpmaster.internal/ubuntu eoan/main armhf libpam-modules-bin armhf 1.3.1-5ubuntu1 [33.1 kB] Get:85 http://ftpmaster.internal/ubuntu eoan/main armhf libpam-modules armhf 1.3.1-5ubuntu1 [230 kB] Get:86 http://ftpmaster.internal/ubuntu eoan/main armhf passwd armhf 1:4.5-1.1ubuntu2 [768 kB] Get:87 http://ftpmaster.internal/ubuntu eoan/main armhf adduser all 3.118ubuntu1 [163 kB] Get:88 http://ftpmaster.internal/ubuntu eoan/main armhf systemd armhf 240-6ubuntu9 [3150 kB] Get:89 http://ftpmaster.internal/ubuntu eoan/main armhf libsystemd0 armhf 240-6ubuntu9 [221 kB] Get:90 http://ftpmaster.internal/ubuntu eoan/main armhf libzstd1 armhf 1.4.2+dfsg-1 [206 kB] Get:91 http://ftpmaster.internal/ubuntu eoan-proposed/main armhf libapt-pkg5.90 armhf 1.9.3 [768 kB] Get:92 http://ftpmaster.internal/ubuntu eoan/main armhf libgcrypt20 armhf 1.8.4-5ubuntu1 [364 kB] Get:93 http://ftpmaster.internal/ubuntu eoan/main armhf gpgv armhf 2.2.12-1ubuntu3 [167 kB] Get:94 http://ftpmaster.internal/ubuntu eoan-proposed/main armhf apt armhf 1.9.3 [1235 kB] Get:95 http://ftpmaster.internal/ubuntu eoan/main armhf libext2fs2 armhf 1.45.2-1ubuntu1 [170 kB] Get:96 http://ftpmaster.internal/ubuntu eoan/main armhf e2fsprogs armhf 1.45.2-1ubuntu1 [513 kB] Get:97 http://ftpmaster.internal/ubuntu eoan/main armhf init armhf 1.57 [6084 B] Get:98 http://ftpmaster.internal/ubuntu eoan/main armhf libattr1 armhf 1:2.4.48-4 [11.3 kB] Get:99 http://ftpmaster.internal/ubuntu eoan/main armhf libpam-runtime all 1.3.1-5ubuntu1 [37.3 kB] Get:100 http://ftpmaster.internal/ubuntu eoan/main armhf libpcre3 armhf 2:8.39-12 [207 kB] Get:101 http://ftpmaster.internal/ubuntu eoan/main armhf libcom-err2 armhf 1.45.2-1ubuntu1 [9004 B] Get:102 http://ftpmaster.internal/ubuntu eoan/main armhf libprocps7 armhf 2:3.3.15-2ubuntu3 [29.9 kB] Get:103 http://ftpmaster.internal/ubuntu eoan/main armhf libss2 armhf 1.45.2-1ubuntu1 [9296 B] Get:104 http://ftpmaster.internal/ubuntu eoan/main armhf procps armhf 2:3.3.15-2ubuntu3 [220 kB] Get:105 http://ftpmaster.internal/ubuntu eoan-proposed/main armhf openssl armhf 1.1.1c-1ubuntu4 [595 kB] Get:106 http://ftpmaster.internal/ubuntu eoan/main armhf ca-certificates all 20190110 [146 kB] Get:107 http://ftpmaster.internal/ubuntu eoan/main armhf dmsetup armhf 2:1.02.155-2ubuntu5 [74.5 kB] Get:108 http://ftpmaster.internal/ubuntu eoan/main armhf readline-common all 8.0-2 [53.4 kB] Get:109 http://ftpmaster.internal/ubuntu eoan/main armhf libreadline8 armhf 8.0-2 [109 kB] Get:110 http://ftpmaster.internal/ubuntu eoan/main armhf libslang2 armhf 2.3.2-4 [388 kB] Get:111 http://ftpmaster.internal/ubuntu eoan-proposed/main armhf libsqlite3-0 armhf 3.29.0-2 [456 kB] Get:112 http://ftpmaster.internal/ubuntu eoan/main armhf tzdata all 2019b-2 [187 kB] Get:113 http://ftpmaster.internal/ubuntu eoan/main armhf xz-utils armhf 5.2.4-1 [80.6 kB] Get:114 http://ftpmaster.internal/ubuntu eoan/main armhf libpng16-16 armhf 1.6.37-1 [162 kB] Get:115 http://ftpmaster.internal/ubuntu eoan/main armhf multiarch-support armhf 2.29-0ubuntu3 [6920 B] Get:116 http://ftpmaster.internal/ubuntu eoan/main armhf advancecomp armhf 2.1-2.1 [166 kB] Get:117 http://ftpmaster.internal/ubuntu eoan/main armhf binutils-arm-linux-gnueabihf armhf 2.32.51.20190813-1ubuntu1 [2331 kB] Get:118 http://ftpmaster.internal/ubuntu eoan/main armhf libbinutils armhf 2.32.51.20190813-1ubuntu1 [315 kB] Get:119 http://ftpmaster.internal/ubuntu eoan/main armhf binutils armhf 2.32.51.20190813-1ubuntu1 [3356 B] Get:120 http://ftpmaster.internal/ubuntu eoan/main armhf binutils-common armhf 2.32.51.20190813-1ubuntu1 [202 kB] Get:121 http://ftpmaster.internal/ubuntu eoan/main armhf libisl21 armhf 0.21-1 [441 kB] Get:122 http://ftpmaster.internal/ubuntu eoan/main armhf libmpfr6 armhf 4.0.2-1 [196 kB] Get:123 http://ftpmaster.internal/ubuntu eoan/main armhf cpp-9 armhf 9.2.1-2ubuntu1 [7456 kB] Get:124 http://ftpmaster.internal/ubuntu eoan/main armhf g++ armhf 4:9.1.0-1ubuntu4 [1612 B] Get:125 http://ftpmaster.internal/ubuntu eoan/main armhf gcc armhf 4:9.1.0-1ubuntu4 [5220 B] Get:126 http://ftpmaster.internal/ubuntu eoan/main armhf cpp armhf 4:9.1.0-1ubuntu4 [27.6 kB] Get:127 http://ftpmaster.internal/ubuntu eoan/main armhf libcc1-0 armhf 9.2.1-2ubuntu1 [41.8 kB] Get:128 http://ftpmaster.internal/ubuntu eoan/main armhf libgomp1 armhf 9.2.1-2ubuntu1 [77.4 kB] Get:129 http://ftpmaster.internal/ubuntu eoan/main armhf libatomic1 armhf 9.2.1-2ubuntu1 [7084 B] Get:130 http://ftpmaster.internal/ubuntu eoan/main armhf libasan5 armhf 9.2.1-2ubuntu1 [386 kB] Get:131 http://ftpmaster.internal/ubuntu eoan/main armhf libubsan1 armhf 9.2.1-2ubuntu1 [118 kB] Get:132 http://ftpmaster.internal/ubuntu eoan/main armhf libgcc-9-dev armhf 9.2.1-2ubuntu1 [687 kB] Get:133 http://ftpmaster.internal/ubuntu eoan/main armhf gcc-9 armhf 9.2.1-2ubuntu1 [8055 kB] Get:134 http://ftpmaster.internal/ubuntu eoan/main armhf libstdc++-9-dev armhf 9.2.1-2ubuntu1 [1740 kB] Get:135 http://ftpmaster.internal/ubuntu eoan/main armhf g++-9 armhf 9.2.1-2ubuntu1 [8523 kB] Get:136 http://ftpmaster.internal/ubuntu eoan/main armhf dpkg-dev all 1.19.7ubuntu1 [679 kB] Get:137 http://ftpmaster.internal/ubuntu eoan/main armhf libdpkg-perl all 1.19.7ubuntu1 [230 kB] Get:138 http://ftpmaster.internal/ubuntu eoan/main armhf patch armhf 2.7.6-6 [101 kB] Get:139 http://ftpmaster.internal/ubuntu eoan/main armhf build-essential armhf 12.6ubuntu2 [4680 B] Get:140 http://ftpmaster.internal/ubuntu eoan/universe armhf g++-8 armhf 8.3.0-21ubuntu1 [7527 kB] Get:141 http://ftpmaster.internal/ubuntu eoan/universe armhf gcc-8 armhf 8.3.0-21ubuntu1 [7252 kB] Get:142 http://ftpmaster.internal/ubuntu eoan/universe armhf libstdc++-8-dev armhf 8.3.0-21ubuntu1 [1584 kB] Get:143 http://ftpmaster.internal/ubuntu eoan/universe armhf libgcc-8-dev armhf 8.3.0-21ubuntu1 [628 kB] Get:144 http://ftpmaster.internal/ubuntu eoan/universe armhf cpp-8 armhf 8.3.0-21ubuntu1 [6512 kB] Get:145 http://ftpmaster.internal/ubuntu eoan/universe armhf gcc-8-base armhf 8.3.0-21ubuntu1 [18.5 kB] Get:146 http://ftpmaster.internal/ubuntu eoan/main armhf e2fslibs armhf 1.45.2-1ubuntu1 [2716 B] Get:147 http://ftpmaster.internal/ubuntu eoan/main armhf libassuan0 armhf 2.5.3-7ubuntu1 [29.1 kB] Get:148 http://ftpmaster.internal/ubuntu eoan/main armhf pinentry-curses armhf 1.1.0-3 [31.9 kB] Get:149 http://ftpmaster.internal/ubuntu eoan/main armhf gpg armhf 2.2.12-1ubuntu3 [415 kB] Get:150 http://ftpmaster.internal/ubuntu eoan/main armhf gpgconf armhf 2.2.12-1ubuntu3 [105 kB] Get:151 http://ftpmaster.internal/ubuntu eoan/main armhf gpg-agent armhf 2.2.12-1ubuntu3 [190 kB] Get:152 http://ftpmaster.internal/ubuntu eoan/main armhf libcomerr2 armhf 1.45.2-1ubuntu1 [2704 B] Get:153 http://ftpmaster.internal/ubuntu eoan/main armhf liblockfile-bin armhf 1.15-1 [10.9 kB] Get:154 http://ftpmaster.internal/ubuntu eoan/main armhf liblockfile1 armhf 1.15-1 [5752 B] Get:155 http://ftpmaster.internal/ubuntu eoan/main armhf optipng armhf 0.7.7-1 [81.1 kB] Get:156 http://ftpmaster.internal/ubuntu eoan/main armhf pkgbinarymangler all 144 [55.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 92.4 MB in 8s (11.0 MB/s) (Reading database ... 12402 files and directories currently installed.) 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Setting up bzip2 (1.0.6-9.2) ... Setting up tzdata (2019b-2) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Aug 20 17:11:57 UTC 2019. Universal Time is now: Tue Aug 20 17:11:57 UTC 2019. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libasan5:armhf (9.2.1-2ubuntu1) ... Setting up libslang2:armhf (2.3.2-4) ... Setting up multiarch-support (2.29-0ubuntu3) ... Setting up libmpfr6:armhf (4.0.2-1) ... Setting up libncurses6:armhf (6.1+20190803-1ubuntu1) ... Setting up xz-utils (5.2.4-1) ... Setting up libpng16-16:armhf (1.6.37-1) ... Setting up libatomic1:armhf (9.2.1-2ubuntu1) ... Setting up patch (2.7.6-6) ... Setting up libss2:armhf (1.45.2-1ubuntu1) ... Setting up gcc-8-base:armhf (8.3.0-21ubuntu1) ... Setting up libubsan1:armhf (9.2.1-2ubuntu1) ... Setting up advancecomp (2.1-2.1) ... Setting up dmsetup (2:1.02.155-2ubuntu5) ... Setting up libcomerr2:armhf (1.45.2-1ubuntu1) ... Setting up procps (2:3.3.15-2ubuntu3) ... Installing new version of config file /etc/sysctl.d/10-network-security.conf ... Setting up cpp-9 (9.2.1-2ubuntu1) ... Setting up liblockfile1:armhf (1.15-1) ... Setting up libbinutils:armhf (2.32.51.20190813-1ubuntu1) ... Setting up cpp-8 (8.3.0-21ubuntu1) ... Setting up libc-dev-bin (2.29-0ubuntu3) ... Setting up openssl (1.1.1c-1ubuntu4) ... Installing new version of config file /etc/ssl/openssl.cnf ... Setting up binutils-arm-linux-gnueabihf (2.32.51.20190813-1ubuntu1) ... Setting up readline-common (8.0-2) ... Setting up libcc1-0:armhf (9.2.1-2ubuntu1) ... Setting up libgdbm6:armhf (1.18.1-4) ... Setting up pinentry-curses (1.1.0-3) ... Setting up libreadline8:armhf (8.0-2) ... Setting up e2fsprogs (1.45.2-1ubuntu1) ... Installing new version of config file /etc/mke2fs.conf ... Created symlink /etc/systemd/system/timers.target.wants/e2scrub_all.timer -> /lib/systemd/system/e2scrub_all.timer. Created symlink /etc/systemd/system/default.target.wants/e2scrub_reap.service -> /lib/systemd/system/e2scrub_reap.service. Setting up binutils (2.32.51.20190813-1ubuntu1) ... Setting up libgcc-9-dev:armhf (9.2.1-2ubuntu1) ... Setting up ca-certificates (20190110) ... Updating certificates in /etc/ssl/certs... 2 added, 7 removed; done. Setting up optipng (0.7.7-1) ... Setting up libgdbm-compat4:armhf (1.18.1-4) ... Setting up libgcc-8-dev:armhf (8.3.0-21ubuntu1) ... Setting up libperl5.28:armhf (5.28.1-6) ... Setting up cpp (4:9.1.0-1ubuntu4) ... Setting up gpgconf (2.2.12-1ubuntu3) ... Setting up libc6-dev:armhf (2.29-0ubuntu3) ... Setting up gpg (2.2.12-1ubuntu3) ... Setting up libstdc++-8-dev:armhf (8.3.0-21ubuntu1) ... Setting up gcc-9 (9.2.1-2ubuntu1) ... Setting up gcc-8 (8.3.0-21ubuntu1) ... Setting up gpg-agent (2.2.12-1ubuntu3) ... Setting up libstdc++-9-dev:armhf (9.2.1-2ubuntu1) ... Setting up pkgbinarymangler (144) ... Setting up gcc (4:9.1.0-1ubuntu4) ... Setting up perl (5.28.1-6) ... Setting up g++-9 (9.2.1-2ubuntu1) ... Setting up libdpkg-perl (1.19.7ubuntu1) ... Setting up g++ (4:9.1.0-1ubuntu4) ... Setting up g++-8 (8.3.0-21ubuntu1) ... Setting up dpkg-dev (1.19.7ubuntu1) ... Setting up build-essential (12.6ubuntu2) ... Processing triggers for systemd (240-6ubuntu9) ... Processing triggers for libc-bin (2.29-0ubuntu3) ... Processing triggers for ca-certificates (20190110) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-17445634 armhf eoan-proposed -c chroot:build-PACKAGEBUILD-17445634 --arch=armhf --dist=eoan-proposed --nolog libncl_2.1.21+git20190531.feceb81-1.dsc Initiating build PACKAGEBUILD-17445634 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-159-generic #187-Ubuntu SMP Thu Aug 1 16:29:27 UTC 2019 armv7l sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-arm64-051.buildd +==============================================================================+ | libncl 2.1.21+git20190531.feceb81-1 (armhf) 20 Aug 2019 17:12 | +==============================================================================+ Package: libncl Version: 2.1.21+git20190531.feceb81-1 Source Version: 2.1.21+git20190531.feceb81-1 Distribution: eoan-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf I: NOTICE: Log filtering will replace 'build/libncl-V4eQH8/libncl-2.1.21+git20190531.feceb81' with '<>' I: NOTICE: Log filtering will replace 'build/libncl-V4eQH8' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-17445634/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- libncl_2.1.21+git20190531.feceb81-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-z_VI1O/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-z_VI1O/apt_archive ./ InRelease Get:2 copy:/<>/resolver-z_VI1O/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-z_VI1O/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-z_VI1O/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-z_VI1O/apt_archive ./ Packages [527 B] Fetched 2860 B in 0s (99.9 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-8 libapt-pkg5.0 libisl19 libjson-c3 libreadline7 libstdc++-8-dev Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-z_VI1O/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 13612 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper-compat (= 12), d-shlibs, python Filtered Build-Depends: debhelper-compat (= 12), d-shlibs, python dpkg-deb: building package 'sbuild-build-depends-libncl-dummy' in '/<>/resolver-Ifnba2/apt_archive/sbuild-build-depends-libncl-dummy.deb'. Ign:1 copy:/<>/resolver-Ifnba2/apt_archive ./ InRelease Get:2 copy:/<>/resolver-Ifnba2/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-Ifnba2/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-Ifnba2/apt_archive ./ Sources [226 B] Get:5 copy:/<>/resolver-Ifnba2/apt_archive ./ Packages [542 B] Fetched 2887 B in 0s (30.4 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install libncl build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-8 libapt-pkg5.0 libisl19 libjson-c3 libreadline7 libstdc++-8-dev Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libelf1 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libicu63 libmagic-mgc libmagic1 libpipeline1 libpython-stdlib libpython2-stdlib libpython2.7-minimal libpython2.7-stdlib libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db mime-support po-debconf python python-minimal python2 python2-minimal python2.7 python2.7-minimal Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python-doc python-tk python2-doc python2.7-doc binfmt-support Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libelf1 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libicu63 libmagic-mgc libmagic1 libpipeline1 libpython-stdlib libpython2-stdlib libpython2.7-minimal libpython2.7-stdlib libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db mime-support po-debconf python python-minimal python2 python2-minimal python2.7 python2.7-minimal sbuild-build-depends-libncl-dummy 0 upgraded, 46 newly installed, 0 to remove and 0 not upgraded. Need to get 19.8 MB of archives. After this operation, 74.3 MB of additional disk space will be used. 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Setting up python2 (2.7.16-1) ... Setting up libpython-stdlib:armhf (2.7.16-1) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:armhf (0.6.13-1) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.13-1) ... Setting up groff-base (1.22.4-3) ... Setting up python (2.7.16-1) ... Setting up automake (1:1.16.1-4ubuntu3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up man-db (2.8.6.1-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up po-debconf (1.0.21) ... Setting up dh-strip-nondeterminism (1.5.0-1) ... 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Processing triggers for libc-bin (2.29-0ubuntu3) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-159-generic arm64 (armv7l) Toolchain package versions: binutils_2.32.51.20190813-1ubuntu1 dpkg-dev_1.19.7ubuntu1 g++-8_8.3.0-21ubuntu1 g++-9_9.2.1-2ubuntu1 gcc-8_8.3.0-21ubuntu1 gcc-9_9.2.1-2ubuntu1 libc6-dev_2.29-0ubuntu3 libstdc++-8-dev_8.3.0-21ubuntu1 libstdc++-9-dev_9.2.1-2ubuntu1 libstdc++6_9.2.1-2ubuntu1 linux-libc-dev_5.2.0-13.14 Package versions: adduser_3.118ubuntu1 advancecomp_2.1-2.1 apt_1.9.3 autoconf_2.69-11 automake_1:1.16.1-4ubuntu3 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.2ubuntu4 base-passwd_3.5.46 bash_5.0-4ubuntu1 binutils_2.32.51.20190813-1ubuntu1 binutils-arm-linux-gnueabihf_2.32.51.20190813-1ubuntu1 binutils-common_2.32.51.20190813-1ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.34-0.1ubuntu1 build-essential_12.6ubuntu2 bzip2_1.0.6-9.2 ca-certificates_20190110 coreutils_8.30-3ubuntu1 cpp_4:9.1.0-1ubuntu4 cpp-8_8.3.0-21ubuntu1 cpp-9_9.2.1-2ubuntu1 d-shlibs_0.86 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.4ubuntu1 debianutils_4.8.6.3 dh-autoreconf_19 dh-strip-nondeterminism_1.5.0-1 diffutils_1:3.7-3 dmsetup_2:1.02.155-2ubuntu5 dpkg_1.19.7ubuntu1 dpkg-dev_1.19.7ubuntu1 dwz_0.13-1 e2fslibs_1.45.2-1ubuntu1 e2fsprogs_1.45.2-1ubuntu1 fakeroot_1.23-1 fdisk_2.34-0.1ubuntu1 file_1:5.37-5 findutils_4.6.0+git+20190209-2ubuntu1 g++_4:9.1.0-1ubuntu4 g++-8_8.3.0-21ubuntu1 g++-9_9.2.1-2ubuntu1 gcc_4:9.1.0-1ubuntu4 gcc-8_8.3.0-21ubuntu1 gcc-8-base_8.3.0-21ubuntu1 gcc-9_9.2.1-2ubuntu1 gcc-9-base_9.2.1-2ubuntu1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpg_2.2.12-1ubuntu3 gpg-agent_2.2.12-1ubuntu3 gpgconf_2.2.12-1ubuntu3 gpgv_2.2.12-1ubuntu3 grep_3.3-1 groff-base_1.22.4-3 gzip_1.10-0ubuntu2 hostname_3.21 init_1.57 init-system-helpers_1.57 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-4 libapparmor1_2.13.2-9ubuntu7 libapt-pkg5.0_1.8.0~alpha2ubuntu1 libapt-pkg5.90_1.9.3 libarchive-zip-perl_1.64-1 libargon2-1_0~20171227-0.2 libasan5_9.2.1-2ubuntu1 libassuan0_2.5.3-7ubuntu1 libatomic1_9.2.1-2ubuntu1 libattr1_1:2.4.48-4 libaudit-common_1:2.8.5-2ubuntu1 libaudit1_1:2.8.5-2ubuntu1 libbinutils_2.32.51.20190813-1ubuntu1 libblkid1_2.34-0.1ubuntu1 libbsd0_0.10.0-1 libbz2-1.0_1.0.6-9.2 libc-bin_2.29-0ubuntu3 libc-dev-bin_2.29-0ubuntu3 libc6_2.29-0ubuntu3 libc6-dev_2.29-0ubuntu3 libcap-ng0_0.7.9-2 libcap2_1:2.25-2 libcc1-0_9.2.1-2ubuntu1 libcom-err2_1.45.2-1ubuntu1 libcomerr2_1.45.2-1ubuntu1 libcroco3_0.6.13-1 libcryptsetup12_2:2.2.0-1ubuntu1 libdb5.3_5.3.28+dfsg1-0.6ubuntu1 libdebconfclient0_0.249ubuntu1 libdevmapper1.02.1_2:1.02.155-2ubuntu5 libdpkg-perl_1.19.7ubuntu1 libelf1_0.176-1.1 libexpat1_2.2.7-1 libext2fs2_1.45.2-1ubuntu1 libfakeroot_1.23-1 libfdisk1_2.34-0.1ubuntu1 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.5.0-1 libgcc-8-dev_8.3.0-21ubuntu1 libgcc-9-dev_9.2.1-2ubuntu1 libgcc1_1:9.2.1-2ubuntu1 libgcrypt20_1.8.4-5ubuntu1 libgdbm-compat4_1.18.1-4 libgdbm6_1.18.1-4 libglib2.0-0_2.61.2-2 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.9-4 libgomp1_9.2.1-2ubuntu1 libgpg-error0_1.36-7 libhogweed4_3.4.1-1 libicu63_63.2-2 libidn11_1.33-2.2ubuntu2 libidn2-0_2.2.0-1 libip4tc0_1.6.1-2ubuntu3 libisl19_0.20-2 libisl21_0.21-1 libjson-c3_0.12.1-1.3 libjson-c4_0.13.1+dfsg-4 libkmod2_26-1ubuntu1 liblockfile-bin_1.15-1 liblockfile1_1.15-1 liblz4-1_1.9.1-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.37-5 libmagic1_1:5.37-5 libmount1_2.34-0.1ubuntu1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libncurses6_6.1+20190803-1ubuntu1 libncursesw6_6.1+20190803-1ubuntu1 libnettle6_3.4.1-1 libnpth0_1.6-1 libp11-kit0_0.23.16.1-2 libpam-modules_1.3.1-5ubuntu1 libpam-modules-bin_1.3.1-5ubuntu1 libpam-runtime_1.3.1-5ubuntu1 libpam0g_1.3.1-5ubuntu1 libpcre2-8-0_10.32-5 libpcre3_2:8.39-12 libperl5.28_5.28.1-6 libpipeline1_1.5.1-2 libpng16-16_1.6.37-1 libprocps7_2:3.3.15-2ubuntu3 libpython-stdlib_2.7.16-1 libpython2-stdlib_2.7.16-1 libpython2.7-minimal_2.7.16-3 libpython2.7-stdlib_2.7.16-3 libreadline7_7.0-5 libreadline8_8.0-2 libseccomp2_2.4.1-0ubuntu0.19.10.3 libselinux1_2.9-2 libsemanage-common_2.9-3 libsemanage1_2.9-3 libsepol1_2.9-2 libsigsegv2_2.12-2 libslang2_2.3.2-4 libsmartcols1_2.34-0.1ubuntu1 libsqlite3-0_3.29.0-2 libss2_1.45.2-1ubuntu1 libssl1.1_1.1.1c-1ubuntu4 libstdc++-8-dev_8.3.0-21ubuntu1 libstdc++-9-dev_9.2.1-2ubuntu1 libstdc++6_9.2.1-2ubuntu1 libsub-override-perl_0.09-2 libsystemd0_240-6ubuntu9 libtasn1-6_4.14-2 libtinfo6_6.1+20190803-1ubuntu1 libtool_2.4.6-10 libubsan1_9.2.1-2ubuntu1 libuchardet0_0.0.6-3 libudev1_240-6ubuntu9 libunistring2_0.9.10-2 libusb-0.1-4_2:0.1.12-32 libuuid1_2.34-0.1ubuntu1 libxml2_2.9.4+dfsg1-7ubuntu3 libzstd1_1.4.2+dfsg-1 linux-libc-dev_5.2.0-13.14 lockfile-progs_0.1.18 login_1:4.5-1.1ubuntu2 lsb-base_11.0.1ubuntu1 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.6.1-1 mawk_1.3.3-17ubuntu3 mime-support_3.63ubuntu1 mount_2.34-0.1ubuntu1 multiarch-support_2.29-0ubuntu3 ncurses-base_6.1+20190803-1ubuntu1 ncurses-bin_6.1+20190803-1ubuntu1 openssl_1.1.1c-1ubuntu4 optipng_0.7.7-1 passwd_1:4.5-1.1ubuntu2 patch_2.7.6-6 perl_5.28.1-6 perl-base_5.28.1-6 perl-modules-5.28_5.28.1-6 pinentry-curses_1.1.0-3 pkgbinarymangler_144 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu3 python_2.7.16-1 python-minimal_2.7.16-1 python2_2.7.16-1 python2-minimal_2.7.16-1 python2.7_2.7.16-3 python2.7-minimal_2.7.16-3 readline-common_8.0-2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-libncl-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 systemd_240-6ubuntu9 systemd-sysv_240-6ubuntu9 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.95-5ubuntu2 tar_1.30+dfsg-6 tzdata_2019b-2 ubuntu-keyring_2018.09.18.1 util-linux_2.34-0.1ubuntu1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1ubuntu3 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Tue Aug 20 13:14:24 2019 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libncl_2.1.21+git20190531.feceb81-1.dsc dpkg-source: info: extracting libncl in libncl-2.1.21+git20190531.feceb81 dpkg-source: info: unpacking libncl_2.1.21+git20190531.feceb81.orig.tar.xz dpkg-source: info: unpacking libncl_2.1.21+git20190531.feceb81-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_rpath_issue.patch dpkg-source: info: applying set_soname_version.patch dpkg-source: info: applying spelling.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-17445634 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-17445634 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-17445634 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package libncl dpkg-buildpackage: info: source version 2.1.21+git20190531.feceb81-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81' dh_clean find . -name ".roundTripNCL*" -delete make[1]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81' debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'config'. libtoolize: copying file 'config/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'config'. libtoolize: copying file 'config/libtool.m4' libtoolize: copying file 'config/ltoptions.m4' libtoolize: copying file 'config/ltsugar.m4' libtoolize: copying file 'config/ltversion.m4' libtoolize: copying file 'config/lt~obsolete.m4' configure.ac:28: installing 'config/compile' configure.ac:21: installing 'config/missing' example/basiccmdline/Makefile.am: installing 'config/depcomp' debian/rules override_dh_auto_configure make[1]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81' dh_auto_configure -- --with-constfuncs=yes ./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --with-constfuncs=yes configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether UID '2001' is supported by ustar format... yes checking whether GID '2501' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar checking whether ln -s works... yes checking build system type... arm-unknown-linux-gnueabihf checking host system type... arm-unknown-linux-gnueabihf checking how to print strings... printf checking whether make supports the include directive... yes (GNU style) checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking how to convert arm-unknown-linux-gnueabihf file names to arm-unknown-linux-gnueabihf format... func_convert_file_noop checking how to convert arm-unknown-linux-gnueabihf file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether C++ compiler works... yes checking for ANSI C header files... (cached) yes checking float.h usability... yes checking float.h presence... yes checking for float.h... yes checking for stdlib.h... (cached) yes checking for stdbool.h that conforms to C99... no checking for _Bool... no checking for an ANSI C-conforming const... yes checking for inline... inline checking whether struct tm is in sys/time.h or time.h... time.h checking whether time.h and sys/time.h may both be included... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking for alarm... yes checking for working mktime... yes checking for working strtod... yes checking for memmove... yes checking for strchr... yes checking for strtol... yes checking for python... /usr/bin/python checking python module: subprocess... yes checking whether make sets $(MAKE)... (cached) yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating example/Makefile config.status: creating example/basiccmdline/Makefile config.status: creating example/check-taxo-nodes/Makefile config.status: creating example/compressor/Makefile config.status: creating example/find-unsupported-edges/Makefile config.status: creating example/gapcode/Makefile config.status: creating example/ot-subtree/Makefile config.status: creating example/ot-tree-inspect/Makefile config.status: creating example/nclsimplest/Makefile config.status: creating example/ncltest/Makefile config.status: creating example/normalizer/Makefile config.status: creating example/patristic/Makefile config.status: creating example/phylobaseinterface/Makefile config.status: creating example/polytomy-count/Makefile config.status: creating example/outdeg1count/Makefile config.status: creating example/splitsinfile/Makefile config.status: creating example/subsetter/Makefile config.status: creating example/translate/Makefile config.status: creating ncl/Makefile config.status: creating test/Makefile config.status: creating nclv2.1.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode make[1]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81' dh_auto_build -a make -j4 make[1]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81' make all-recursive make[2]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81' Making all in ncl make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/ncl' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o nxsassumptionsblock.lo nxsassumptionsblock.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o nxsblock.lo nxsblock.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o nxscharactersblock.lo nxscharactersblock.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o nxscxxdiscretematrix.lo nxscxxdiscretematrix.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c nxscharactersblock.cpp -fPIC -DPIC -o .libs/nxscharactersblock.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c nxscxxdiscretematrix.cpp -fPIC -DPIC -o .libs/nxscxxdiscretematrix.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c nxsblock.cpp -fPIC -DPIC -o .libs/nxsblock.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c nxsassumptionsblock.cpp -fPIC -DPIC -o .libs/nxsassumptionsblock.o In file included from /usr/include/c++/9/vector:72, from ../ncl/nxscxxdiscretematrix.h:25, from nxscxxdiscretematrix.cpp:20: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const NxsCharacterPattern&}; _Tp = NxsCharacterPattern; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from ../ncl/nxscxxdiscretematrix.h:25, from nxscxxdiscretematrix.cpp:20: /usr/include/c++/9/bits/stl_vector.h: In function ‘void NxsConsumePatternSetToPatternVector(std::set&, std::vector&, const std::vector*, std::vector*, std::vector >*)’: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c nxsblock.cpp -o nxsblock.o >/dev/null 2>&1 In file included from /usr/include/c++/9/map:60, from ../ncl/nxsdefs.h:24, from ../ncl/nxscxxdiscretematrix.h:26, from nxscxxdiscretematrix.cpp:20: /usr/include/c++/9/bits/stl_tree.h: In member function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = NxsCharacterPattern; _Val = NxsCharacterPattern; _KeyOfValue = std::_Identity; _Compare = std::less; _Alloc = std::allocator]’: /usr/include/c++/9/bits/stl_tree.h:2187:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::less, std::allocator >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator’} changed in GCC 7.1 2187 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c nxscxxdiscretematrix.cpp -o nxscxxdiscretematrix.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o nxsdatablock.lo nxsdatablock.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c nxsdatablock.cpp -fPIC -DPIC -o .libs/nxsdatablock.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o nxsdistancesblock.lo nxsdistancesblock.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c nxsdistancesblock.cpp -fPIC -DPIC -o .libs/nxsdistancesblock.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c nxsdatablock.cpp -o nxsdatablock.o >/dev/null 2>&1 In file included from /usr/include/c++/9/vector:72, from ../ncl/nxsdefs.h:23, from ../ncl/nxscharactersblock.h:27, from nxscharactersblock.cpp:26: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from ../ncl/nxsdefs.h:23, from ../ncl/nxscharactersblock.h:27, from nxscharactersblock.cpp:26: /usr/include/c++/9/bits/stl_vector.h: In member function ‘std::vector NxsTransformationManager::GetDoubleWeights(const string&) const’: /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from ../ncl/nxsdefs.h:23, from ../ncl/nxscharactersblock.h:27, from nxscharactersblock.cpp:26: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c nxsdistancesblock.cpp -o nxsdistancesblock.o >/dev/null 2>&1 In file included from /usr/include/c++/9/list:64, from ../ncl/nxsdefs.h:26, from ../ncl/nxsassumptionsblock.h:25, from nxsassumptionsblock.cpp:22: /usr/include/c++/9/bits/list.tcc: In member function ‘void std::__cxx11::list<_Tp, _Alloc>::_M_assign_dispatch(_InputIterator, _InputIterator, std::__false_type) [with _InputIterator = std::_List_const_iterator > >; _Tp = std::pair >; _Alloc = std::allocator > >]’: /usr/include/c++/9/bits/list.tcc:308:7: note: parameter passing for argument of type ‘std::_List_const_iterator > >’ changed in GCC 7.1 308 | list<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/list.tcc:308:7: note: parameter passing for argument of type ‘std::_List_const_iterator > >’ changed in GCC 7.1 /usr/include/c++/9/bits/list.tcc:308:7: note: parameter passing for argument of type ‘std::_List_const_iterator > >’ changed in GCC 7.1 /usr/include/c++/9/bits/list.tcc: In member function ‘bool NxsTransformationManager::AddRealWeightSet(const string&, const ListOfDblWeights&, bool)’: /usr/include/c++/9/bits/list.tcc:286:4: note: parameter passing for argument of type ‘std::_List_const_iterator > >’ changed in GCC 7.1 286 | _M_assign_dispatch(__x.begin(), __x.end(), __false_type()); | ^~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o nxsexception.lo nxsexception.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c nxsexception.cpp -fPIC -DPIC -o .libs/nxsexception.o In file included from /usr/include/c++/9/vector:67, from ../ncl/nxsdefs.h:23, from ../ncl/nxscharactersblock.h:27, from nxscharactersblock.cpp:26: /usr/include/c++/9/bits/stl_vector.h: In member function ‘bool NxsCharactersBlock::HandleNextContinuousState(NxsToken&, unsigned int, unsigned int, NxsCharactersBlock::ContinuousCharRow&, const NxsString&)’: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c nxsexception.cpp -o nxsexception.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o nxsmultiformat.lo nxsmultiformat.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c nxsmultiformat.cpp -fPIC -DPIC -o .libs/nxsmultiformat.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o nxspublicblocks.lo nxspublicblocks.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c nxspublicblocks.cpp -fPIC -DPIC -o .libs/nxspublicblocks.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c nxsassumptionsblock.cpp -o nxsassumptionsblock.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c nxspublicblocks.cpp -o nxspublicblocks.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c nxsmultiformat.cpp -o nxsmultiformat.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c nxscharactersblock.cpp -o nxscharactersblock.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o nxsreader.lo nxsreader.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c nxsreader.cpp -fPIC -DPIC -o .libs/nxsreader.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o nxssetreader.lo nxssetreader.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c nxssetreader.cpp -fPIC -DPIC -o .libs/nxssetreader.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o nxsstring.lo nxsstring.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c nxsstring.cpp -fPIC -DPIC -o .libs/nxsstring.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c nxsstring.cpp -o nxsstring.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c nxssetreader.cpp -o nxssetreader.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o nxstaxablock.lo nxstaxablock.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c nxstaxablock.cpp -fPIC -DPIC -o .libs/nxstaxablock.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c nxsreader.cpp -o nxsreader.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o nxstaxaassociationblock.lo nxstaxaassociationblock.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c nxstaxaassociationblock.cpp -fPIC -DPIC -o .libs/nxstaxaassociationblock.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c nxstaxaassociationblock.cpp -o nxstaxaassociationblock.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c nxstaxablock.cpp -o nxstaxablock.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o nxstoken.lo nxstoken.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c nxstoken.cpp -fPIC -DPIC -o .libs/nxstoken.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o nxstreesblock.lo nxstreesblock.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c nxstreesblock.cpp -fPIC -DPIC -o .libs/nxstreesblock.o In file included from /usr/include/c++/9/vector:72, from ../ncl/nxsdefs.h:23, from ../ncl/nxsstring.h:29, from ../ncl/nxsexception.h:23, from ../ncl/nxstoken.h:23, from nxstoken.cpp:22: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ProcessedNxsToken}; _Tp = ProcessedNxsToken; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In static member function ‘static std::vector NxsToken::Tokenize(const string&)’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function ‘void NxsToken::ProcessAsCommand(ProcessedNxsCommand*)’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/map:60, from ../ncl/nxsdefs.h:24, from ../ncl/nxstreesblock.h:24, from nxstreesblock.cpp:23: /usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o nxsunalignedblock.lo nxsunalignedblock.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c nxstoken.cpp -o nxstoken.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c nxsunalignedblock.cpp -fPIC -DPIC -o .libs/nxsunalignedblock.o In file included from /usr/include/c++/9/vector:72, from ../ncl/nxsdefs.h:23, from ../ncl/nxstreesblock.h:24, from nxstreesblock.cpp:23: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {NxsFullTreeDescription}; _Tp = NxsFullTreeDescription; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {NxsFullTreeDescription}; _Tp = NxsFullTreeDescription; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/map:61, from ../ncl/nxsdefs.h:24, from ../ncl/nxstreesblock.h:24, from nxstreesblock.cpp:23: /usr/include/c++/9/bits/stl_map.h: In member function ‘std::vector > NxsSimpleTree::GetDblPathDistances(bool) const’: /usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/include/c++/9/vector:72, from ../ncl/nxsdefs.h:23, from ../ncl/nxstreesblock.h:24, from nxstreesblock.cpp:23: /usr/include/c++/9/bits/vector.tcc: In member function ‘void NxsTreesBlock::ReadPhylipTreeFile(NxsToken&)’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c nxsunalignedblock.cpp -o nxsunalignedblock.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c nxstreesblock.cpp -o nxstreesblock.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -version-info 2:0:0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o libncl.la -rpath /usr/lib/arm-linux-gnueabihf nxsassumptionsblock.lo nxsblock.lo nxscharactersblock.lo nxscxxdiscretematrix.lo nxsdatablock.lo nxsdistancesblock.lo nxsexception.lo nxsmultiformat.lo nxspublicblocks.lo nxsreader.lo nxssetreader.lo nxsstring.lo nxstaxablock.lo nxstaxaassociationblock.lo nxstoken.lo nxstreesblock.lo nxsunalignedblock.lo libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/9/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/9/crtbeginS.o .libs/nxsassumptionsblock.o .libs/nxsblock.o .libs/nxscharactersblock.o .libs/nxscxxdiscretematrix.o .libs/nxsdatablock.o .libs/nxsdistancesblock.o .libs/nxsexception.o .libs/nxsmultiformat.o .libs/nxspublicblocks.o .libs/nxsreader.o .libs/nxssetreader.o .libs/nxsstring.o .libs/nxstaxablock.o .libs/nxstaxaassociationblock.o .libs/nxstoken.o .libs/nxstreesblock.o .libs/nxsunalignedblock.o -L/usr/lib/gcc/arm-linux-gnueabihf/9 -L/usr/lib/gcc/arm-linux-gnueabihf/9/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/9/../../../../lib -L/lib/arm-linux-gnueabihf -L/lib/../lib -L/usr/lib/arm-linux-gnueabihf -L/usr/lib/../lib -L/usr/lib/gcc/arm-linux-gnueabihf/9/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/9/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/9/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -O3 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libncl.so.2 -o .libs/libncl.so.2.0.0 libtool: link: (cd ".libs" && rm -f "libncl.so.2" && ln -s "libncl.so.2.0.0" "libncl.so.2") libtool: link: (cd ".libs" && rm -f "libncl.so" && ln -s "libncl.so.2.0.0" "libncl.so") libtool: link: ar cru .libs/libncl.a nxsassumptionsblock.o nxsblock.o nxscharactersblock.o nxscxxdiscretematrix.o nxsdatablock.o nxsdistancesblock.o nxsexception.o nxsmultiformat.o nxspublicblocks.o nxsreader.o nxssetreader.o nxsstring.o nxstaxablock.o nxstaxaassociationblock.o nxstoken.o nxstreesblock.o nxsunalignedblock.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libncl.a libtool: link: ( cd ".libs" && rm -f "libncl.la" && ln -s "../libncl.la" "libncl.la" ) make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/ncl' Making all in example make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example' Making all in basiccmdline make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/basiccmdline' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o basiccmdline.o basiccmdline.cpp /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o basiccmdline basiccmdline.o ../../ncl/libncl.la libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/basiccmdline basiccmdline.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/basiccmdline' Making all in check-taxo-nodes make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/check-taxo-nodes' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o checktaxonnodes-checktaxonnodes.o `test -f 'checktaxonnodes.cpp' || echo './'`checktaxonnodes.cpp /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o checktaxonnodes checktaxonnodes-checktaxonnodes.o ../../ncl/libncl.la libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/checktaxonnodes checktaxonnodes-checktaxonnodes.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/check-taxo-nodes' Making all in compressor make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/compressor' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o NEXUSCharacterCompressor-compressor.o `test -f 'compressor.cpp' || echo './'`compressor.cpp /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o NEXUSCharacterCompressor NEXUSCharacterCompressor-compressor.o ../../ncl/libncl.la libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/NEXUSCharacterCompressor NEXUSCharacterCompressor-compressor.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/compressor' Making all in find-unsupported-edges make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/find-unsupported-edges' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o findunsupportededges-findunsupportededges.o `test -f 'findunsupportededges.cpp' || echo './'`findunsupportededges.cpp /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o findunsupportededges findunsupportededges-findunsupportededges.o ../../ncl/libncl.la libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/findunsupportededges findunsupportededges-findunsupportededges.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/find-unsupported-edges' Making all in gapcode make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/gapcode' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o NEXUSgapcode-gapcode.o `test -f 'gapcode.cpp' || echo './'`gapcode.cpp In file included from /usr/include/c++/9/vector:72, from ../../ncl/ncl.h:60, from gapcode.cpp:46: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from ../../ncl/ncl.h:60, from gapcode.cpp:46: /usr/include/c++/9/bits/stl_vector.h: In function ‘void writeCharactersAsGapped(std::ostream&, NxsCharactersBlock*)’: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o NEXUSgapcode NEXUSgapcode-gapcode.o 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ncltest.cpp /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o ncltest ncltest.o ../../ncl/libncl.la libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/ncltest ncltest.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/ncltest' Making all in normalizer make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o normalizer.o normalizer.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DJUST_VALIDATE_NEXUS -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o NEXUSvalidator-normalizer.o `test -f 'normalizer.cpp' || echo './'`normalizer.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONVERTER_APP -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o NCLconverter-normalizer.o `test -f 'normalizer.cpp' || echo './'`normalizer.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONVERTER_APP -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o NCLconverter-us2ml.o `test -f 'us2ml.cpp' || echo './'`us2ml.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONVERTER_APP -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o NCLconverter-converter.o `test -f 'converter.cpp' || echo './'`converter.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DJUST_REPORT_NEXUS -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o NEXUSinspector-normalizer.o `test -f 'normalizer.cpp' || echo './'`normalizer.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DTO_NEXML_CONVERTER -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o NEX_us2ml-normalizer.o `test -f 'normalizer.cpp' || echo './'`normalizer.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DTO_NEXML_CONVERTER -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o NEX_us2ml-us2ml.o `test -f 'us2ml.cpp' || echo './'`us2ml.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DMULTIFILE_NEXUS_READER -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o NEXUSunion-normalizer.o `test -f 'normalizer.cpp' || echo './'`normalizer.cpp /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o NEXUSnormalizer normalizer.o ../../ncl/libncl.la libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/NEXUSnormalizer normalizer.o ../../ncl/.libs/libncl.so /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o NEXUSvalidator NEXUSvalidator-normalizer.o ../../ncl/libncl.la libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/NEXUSvalidator NEXUSvalidator-normalizer.o ../../ncl/.libs/libncl.so /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o NEXUSinspector NEXUSinspector-normalizer.o ../../ncl/libncl.la /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o NEXUSunion NEXUSunion-normalizer.o ../../ncl/libncl.la libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/NEXUSinspector NEXUSinspector-normalizer.o ../../ncl/.libs/libncl.so libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/NEXUSunion NEXUSunion-normalizer.o ../../ncl/.libs/libncl.so /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o NCLconverter NCLconverter-normalizer.o NCLconverter-us2ml.o NCLconverter-converter.o ../../ncl/libncl.la libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/NCLconverter NCLconverter-normalizer.o NCLconverter-us2ml.o NCLconverter-converter.o ../../ncl/.libs/libncl.so /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o NEX_us2ml NEX_us2ml-normalizer.o NEX_us2ml-us2ml.o ../../ncl/libncl.la libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/NEX_us2ml NEX_us2ml-normalizer.o NEX_us2ml-us2ml.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer' Making all in ot-subtree make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/ot-subtree' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o otsubtree-otsubtree.o `test -f 'otsubtree.cpp' || echo './'`otsubtree.cpp /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o otsubtree otsubtree-otsubtree.o ../../ncl/libncl.la libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/otsubtree otsubtree-otsubtree.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/ot-subtree' Making all in ot-tree-inspect make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/ot-tree-inspect' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o otTreeInspect-ot_tree_inspect.o `test -f 'ot_tree_inspect.cpp' || echo './'`ot_tree_inspect.cpp /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o otTreeInspect otTreeInspect-ot_tree_inspect.o ../../ncl/libncl.la libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/otTreeInspect otTreeInspect-ot_tree_inspect.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/ot-tree-inspect' Making all in outdeg1count make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/outdeg1count' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o outdeg1count-outdeg1count.o `test -f 'outdeg1count.cpp' || echo './'`outdeg1count.cpp /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o outdeg1count outdeg1count-outdeg1count.o ../../ncl/libncl.la libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/outdeg1count outdeg1count-outdeg1count.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/outdeg1count' Making all in patristic make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/patristic' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o patristic.o patristic.cpp /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o patristicmat patristic.o ../../ncl/libncl.la libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/patristicmat patristic.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/patristic' Making all in phylobaseinterface make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/phylobaseinterface' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o NCLInterface.o NCLInterface.cpp In file included from /usr/include/c++/9/vector:72, from ../../ncl/ncl.h:60, from NCLInterface.cpp:24: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function ‘void BASICCMDLINE::AppendRContent(NxsString&, NxsDistancesBlock&) const’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o PhylobaseNCLInterfaceExample NCLInterface.o ../../ncl/libncl.la libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/PhylobaseNCLInterfaceExample NCLInterface.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/phylobaseinterface' Making all in polytomy-count make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/polytomy-count' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o polytomycount-polytomy_count.o `test -f 'polytomy_count.cpp' || echo './'`polytomy_count.cpp /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o polytomycount polytomycount-polytomy_count.o ../../ncl/libncl.la libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/polytomycount polytomycount-polytomy_count.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/polytomy-count' Making all in splitsinfile make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/splitsinfile' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o NEXUStosplits-splitsinfile.o `test -f 'splitsinfile.cpp' || echo './'`splitsinfile.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o NEXUStosplits-splitsstructs.o `test -f 'splitsstructs.cpp' || echo './'`splitsstructs.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o splitsinfile.o splitsinfile.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o splitsstructs.o splitsstructs.cpp In file included from /usr/include/c++/9/vector:72, from splitsstructs.h:3, from splitsstructs.cpp:1: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from splitsstructs.h:3, from splitsstructs.cpp:1: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 In file included from /usr/include/c++/9/map:60, from ../../ncl/nxsdefs.h:24, from splitsstructs.h:8, from splitsstructs.cpp:1: /usr/include/c++/9/bits/stl_tree.h: In member function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = Split; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/9/bits/stl_tree.h:2187:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 2187 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = Split; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/map:60, from ../../ncl/nxsdefs.h:24, from splitsstructs.h:8, from splitsstructs.cpp:1: /usr/include/c++/9/bits/stl_tree.h: In member function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = Split; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/9/bits/stl_tree.h:2187:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 2187 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = Split; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/map:61, from ../../ncl/nxsdefs.h:24, from splitsstructs.h:8, from splitsstructs.cpp:1: /usr/include/c++/9/bits/stl_map.h: In member function ‘void TreesToSplits::recordSplit(const Split&, const NxsSimpleNode*, TreesToSplits::SplitsMap&, unsigned int)’: /usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/include/c++/9/vector:67, from splitsstructs.h:3, from splitsstructs.cpp:1: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/map:61, from ../../ncl/nxsdefs.h:24, from splitsstructs.h:8, from splitsstructs.cpp:1: /usr/include/c++/9/bits/stl_map.h: In member function ‘void TreesToSplits::recordSplit(const Split&, const NxsSimpleNode*, TreesToSplits::SplitsMap&, unsigned int)’: /usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/include/c++/9/vector:67, from splitsstructs.h:3, from splitsstructs.cpp:1: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from splitsstructs.h:3, from splitsstructs.cpp:1: /usr/include/c++/9/bits/vector.tcc: In member function ‘void TreesToSplits::recordTreeToSplitsMap(const NxsFullTreeDescription&, TreesToSplits::SplitsMap&, unsigned int)’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from splitsstructs.h:3, from splitsstructs.cpp:1: /usr/include/c++/9/bits/vector.tcc: In member function ‘void TreesToSplits::recordTreeToSplitsMap(const NxsFullTreeDescription&, TreesToSplits::SplitsMap&, unsigned int)’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o NEXUStosplits NEXUStosplits-splitsinfile.o NEXUStosplits-splitsstructs.o ../../ncl/libncl.la /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o majrule splitsinfile.o splitsstructs.o ../../ncl/libncl.la libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/NEXUStosplits NEXUStosplits-splitsinfile.o NEXUStosplits-splitsstructs.o ../../ncl/.libs/libncl.so libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/majrule splitsinfile.o splitsstructs.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/splitsinfile' Making all in subsetter make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/subsetter' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o NEXUSsubsetter-subsetter.o `test -f 'subsetter.cpp' || echo './'`subsetter.cpp /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o NEXUSsubsetter NEXUSsubsetter-subsetter.o ../../ncl/libncl.la libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/NEXUSsubsetter NEXUSsubsetter-subsetter.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/subsetter' Making all in translate make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/translate' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o NEXUStranslate-translateNuc.o `test -f 'translateNuc.cpp' || echo './'`translateNuc.cpp In file included from /usr/include/c++/9/vector:72, from ../../ncl/ncl.h:60, from translateNuc.cpp:46: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from ../../ncl/ncl.h:60, from translateNuc.cpp:46: /usr/include/c++/9/bits/stl_vector.h: In function ‘void writeCharactersAsGapped(std::ostream&, NxsCharactersBlock*)’: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o NEXUStranslate NEXUStranslate-translateNuc.o ../../ncl/libncl.la libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20190531.feceb81=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/NEXUStranslate NEXUStranslate-translateNuc.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/translate' make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example' make[4]: Nothing to be done for 'all-am'. make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example' make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example' Making all in test make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/test' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/test' make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81' make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81' make[2]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81' make[1]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81' dh_auto_test -a make -j4 check VERBOSE=1 make[1]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81' Making check in ncl make[2]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/ncl' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/ncl' Making check in example make[2]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example' Making check in basiccmdline make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/basiccmdline' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/basiccmdline' Making check in check-taxo-nodes make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/check-taxo-nodes' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/check-taxo-nodes' Making check in compressor make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/compressor' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/compressor' Making check in find-unsupported-edges make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/find-unsupported-edges' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/find-unsupported-edges' Making check in gapcode make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/gapcode' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/gapcode' Making check in nclsimplest make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/nclsimplest' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/nclsimplest' Making check in ncltest make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/ncltest' make check-local make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/ncltest' /usr/bin/python ../../test/roundTripNCLTest.py ../../example/ncltest/ncltest ../../test/OldValidIn ../../test/OldValidOut "/<>/libncl-2.1.21+git20190531.feceb81/example/ncltest/ncltest" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/OldValidIn/m.nex" [Reading -s2 ] [Reading -s2 ] storing read block: TAXA storing read block: CHARACTERS storing read block: ASSUMPTIONS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/ncltest/ncltest succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/OldValidIn/m.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/ncltest/ncltest" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/OldValidOut/m.nex" [Reading -s2 ] [Reading -s2 ] storing read block: TAXA storing implied block: TAXA storing read block: DATA ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/ncltest/ncltest succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/OldValidOut/m.nex make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/ncltest' make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/ncltest' Making check in normalizer make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer' make check-local make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer' /usr/bin/python ../../test/roundTripNCLTest.py ../../example/normalizer/NEXUSnormalizer ../../data/characters.nex ../../test/data "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/data/characters.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/data/characters.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/data/characters.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/data/characters.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/data/characters.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/data/characters.nex /usr/bin/python ../../test/roundTripNCLTest.py ../../example/normalizer/NEXUSnormalizer ../../data/sample.tre ../../test/data "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/data/sample.tre" [Reading /<>/libncl-2.1.21+git20190531.feceb81/data/sample.tre ] Executing storing read block: PAUP storing read block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/data/sample.tre "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/data/sample.tre" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/data/sample.tre ] Executing storing read block: PAUP storing read block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/data/sample.tre /usr/bin/python ../../test/roundTripNCLTest.py ../../example/normalizer//NEXUSnormalizer ../../test/NTSValidIn ../../test/NTSValidOut "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/m.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/m.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: ASSUMPTIONS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/m.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/m.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/m.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: SETS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/m.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/basic-bush-mac.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/basic-bush-mac.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/basic-bush-mac.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/basic-bush-mac.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/basic-bush-mac.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/basic-bush-mac.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/kim.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/kim.nex ] Executing storing implied block: TAXA storing read block: DATA storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/kim.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/kim.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/kim.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/kim.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/cynmix.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/cynmix.nex ] Executing storing implied block: TAXA storing read block: DATA storing read block: MRBAYES storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/cynmix.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/cynmix.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/cynmix.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: MRBAYES storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/cynmix.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/mdata.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/mdata.nex ] Executing storing implied block: TAXA storing read block: DATA storing read block: ASSUMPTIONS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/mdata.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/mdata.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/mdata.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: SETS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/mdata.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/replicase.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/replicase.nex ] Executing storing implied block: TAXA storing read block: DATA storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/replicase.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/replicase.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/replicase.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/replicase.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/protein.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/protein.nex ] Executing storing read block: TAXA storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/protein.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/protein.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/protein.nex ] Executing storing read block: TAXA storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/protein.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/basic-rake.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/basic-rake.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES storing read block: CODONS Warning: An * is ignored in a CHARSET command at line 67, column (approximately) 46 (file position 929) Warning: An * is ignored in a CHARSET command at line 68, column (approximately) 42 (file position 968) storing read block: ASSUMPTIONS storing read block: ASSUMPTIONS storing read block: MESQUITECHARMODELS storing read block: MESQUITE ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/basic-rake.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/basic-rake.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/basic-rake.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES storing read block: CODONS storing read block: SETS storing read block: ASSUMPTIONS storing read block: MESQUITECHARMODELS storing read block: MESQUITE ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/basic-rake.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/dzmissing_bug.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/dzmissing_bug.nex ] Executing storing implied block: TAXA storing read block: DATA storing read block: ASSUMPTIONS storing read block: MACCLADE ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/dzmissing_bug.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/dzmissing_bug.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/dzmissing_bug.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: ASSUMPTIONS storing read block: MACCLADE ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/dzmissing_bug.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/t.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/t.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/t.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/t.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/t.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/t.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/linktest.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/linktest.nex ] Executing Warning: Skipping command: blockid at line 13, column (approximately) 11 (file position 189) storing read block: TAXA Warning: Skipping command: blockid at line 27, column (approximately) 11 (file position 388) storing read block: TAXA storing read block: CHARACTERS storing read block: CHARACTERS Warning: Skipping unknown LINK subcommand: characters at line 61, column (approximately) 38 (file position 1551) storing read block: TREES Warning: Skipping unknown LINK subcommand: characters at line 71, column (approximately) 38 (file position 1745) storing read block: TREES storing implied block: ASSUMPTIONS storing implied block: ASSUMPTIONS storing read block: ASSUMPTIONS Warning: A TaxSet with the name o has already been encountered. The later definition will preempt the earlier definition(s). at line 90, column (approximately) 42 (file position 2360) storing read block: ASSUMPTIONS storing read block: ASSUMPTIONS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/linktest.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/linktest.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/linktest.nex ] Executing Warning: Skipping command: blockid at line 6, column (approximately) 13 (file position 168) storing read block: TAXA Warning: Skipping command: blockid at line 12, column (approximately) 13 (file position 341) storing read block: TAXA storing read block: CHARACTERS storing read block: CHARACTERS storing read block: TREES storing read block: TREES storing read block: SETS storing read block: SETS storing read block: SETS Warning: A TaxSet with the name o has already been encountered. The later definition will preempt the earlier definition(s). at line 84, column (approximately) 20 (file position 2384) storing read block: SETS storing read block: SETS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/linktest.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/unaligned.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/unaligned.nex ] Executing storing read block: TAXA storing read block: UNALIGNED ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/unaligned.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/unaligned.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/unaligned.nex ] Executing storing read block: TAXA storing read block: UNALIGNED ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/unaligned.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/basic-bush-dos.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/basic-bush-dos.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/basic-bush-dos.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/basic-bush-dos.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/basic-bush-dos.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/basic-bush-dos.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/adh.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/adh.nex ] Executing storing implied block: TAXA storing read block: DATA storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/adh.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/adh.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/adh.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/adh.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/primates.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/primates.nex ] Executing storing implied block: TAXA storing read block: DATA ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/primates.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/primates.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/primates.nex ] Executing storing read block: TAXA storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/primates.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/anolis.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/anolis.nex ] Executing storing implied block: TAXA storing read block: DATA storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/anolis.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/anolis.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/anolis.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/anolis.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/basic-bush-unix.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/basic-bush-unix.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/basic-bush-unix.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/basic-bush-unix.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/basic-bush-unix.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/basic-bush-unix.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/basic-bush-mixed-line-endings.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/basic-bush-mixed-line-endings.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/basic-bush-mixed-line-endings.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/basic-bush-mixed-line-endings.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/basic-bush-mixed-line-endings.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/basic-bush-mixed-line-endings.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/notaxablock.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/notaxablock.nex ] Executing Warning: A TAXA block should be read before the TREES block (but no TAXA block was found). Taxa will be inferred from their usage in the TREES block. at line 3, column (approximately) 13 (file position 32) storing implied block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/notaxablock.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/notaxablock.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/notaxablock.nex ] Executing storing read block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/notaxablock.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/paup_characters.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/paup_characters.nex ] Executing Warning: Skipping command: blockid at line 13, column (approximately) 11 (file position 176) storing read block: TAXA storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/paup_characters.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/paup_characters.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/paup_characters.nex ] Executing Warning: Skipping command: blockid at line 6, column (approximately) 13 (file position 188) storing read block: TAXA storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/paup_characters.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/avian_ovomucoids.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/avian_ovomucoids.nex ] Executing storing implied block: TAXA storing read block: DATA storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/avian_ovomucoids.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/avian_ovomucoids.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/avian_ovomucoids.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/avian_ovomucoids.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/associates.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/associates.nex ] Executing storing read block: TAXA storing read block: TAXA storing read block: TAXAASSOCIATION ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/associates.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/associates.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/associates.nex ] Executing storing read block: TAXA storing read block: TAXA storing read block: TAXAASSOCIATION ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/associates.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/nhxtree.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/nhxtree.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES storing read block: CODONS Warning: An * is ignored in a CHARSET command at line 67, column (approximately) 46 (file position 1014) Warning: An * is ignored in a CHARSET command at line 68, column (approximately) 42 (file position 1053) storing read block: ASSUMPTIONS storing read block: ASSUMPTIONS storing read block: MESQUITECHARMODELS storing read block: MESQUITE ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/nhxtree.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/nhxtree.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/nhxtree.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES storing read block: CODONS storing read block: SETS storing read block: ASSUMPTIONS storing read block: MESQUITECHARMODELS storing read block: MESQUITE ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/nhxtree.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/bglobin.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/bglobin.nex ] Executing storing implied block: TAXA storing read block: DATA storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/bglobin.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/bglobin.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/bglobin.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/bglobin.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/notaxablock-quotes.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/notaxablock-quotes.nex ] Executing Warning: A TAXA block should be read before the TREES block (but no TAXA block was found). Taxa will be inferred from their usage in the TREES block. at line 3, column (approximately) 7 (file position 26) storing implied block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/notaxablock-quotes.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/notaxablock-quotes.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/notaxablock-quotes.nex ] Executing storing read block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/notaxablock-quotes.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/treeswithouttaxa.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/treeswithouttaxa.nex ] Executing Warning: A TAXA block should be read before the TREES block (but no TAXA block was found). Taxa will be inferred from their usage in the TREES block. at line 3, column (approximately) 10 (file position 26) storing implied block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/treeswithouttaxa.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/treeswithouttaxa.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/treeswithouttaxa.nex ] Executing storing read block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/treeswithouttaxa.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/charsets.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/charsets.nex ] Executing Warning: Skipping command: blockid at line 13, column (approximately) 11 (file position 176) storing read block: TAXA storing read block: CHARACTERS storing read block: SETS storing read block: ASSUMPTIONS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/charsets.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/charsets.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/charsets.nex ] Executing Warning: Skipping command: blockid at line 6, column (approximately) 13 (file position 183) storing read block: TAXA storing read block: CHARACTERS storing read block: SETS storing read block: ASSUMPTIONS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/charsets.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/characters.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/characters.nex ] Executing Warning: Skipping command: blockid at line 13, column (approximately) 11 (file position 176) storing read block: TAXA storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/characters.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/characters.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/characters.nex ] Executing Warning: Skipping command: blockid at line 6, column (approximately) 13 (file position 183) storing read block: TAXA storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/characters.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/distances.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/distances.nex ] Executing storing read block: TAXA storing read block: DISTANCES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/distances.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/distances.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/distances.nex ] Executing storing read block: TAXA storing read block: DISTANCES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/distances.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/partitions.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/partitions.nex ] Executing Warning: Skipping command: blockid at line 13, column (approximately) 11 (file position 176) storing read block: TAXA storing read block: CHARACTERS storing read block: TREES storing read block: SETS storing read block: ASSUMPTIONS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/partitions.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/partitions.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/partitions.nex ] Executing Warning: Skipping command: blockid at line 6, column (approximately) 13 (file position 183) storing read block: TAXA storing read block: CHARACTERS storing read block: TREES storing read block: SETS storing read block: ASSUMPTIONS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/partitions.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/parens_intree.tre" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/parens_intree.tre ] Executing storing read block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidIn/parens_intree.tre "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/parens_intree.tre" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/parens_intree.tre ] Executing storing read block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/NTSValidOut/parens_intree.tre /usr/bin/python ../../test/roundTripNCLTest.py -x ../../example/normalizer/NEXUSnormalizer ../../test/funkyValidIn ../../test/funkyValidOut "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "-x" "/<>/libncl-2.1.21+git20190531.feceb81/test/funkyValidIn/choke.tre" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/funkyValidIn/choke.tre ] Executing Warning: A TAXA block should be read before the TREES block (but no TAXA block was found). Taxa will be inferred from their usage in the TREES block. at line 5, column (approximately) 6 (file position 74) storing implied block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/funkyValidIn/choke.tre "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "-x" "/<>/libncl-2.1.21+git20190531.feceb81/test/funkyValidOut/choke.tre" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/funkyValidOut/choke.tre ] Executing storing read block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/funkyValidOut/choke.tre /usr/bin/python ../../test/roundTripNCLTest.py -e ../../example/normalizer/NEXUSnormalizer ../../test/ExternalValidIn ../../test/ExternalValidOut "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "-faarelaxedphylip" "/<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidIn/aarelaxedphylip_rana.phy" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidIn/aarelaxedphylip_rana.phy ] Executing storing implied block: TAXA storing read block: DATA ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidIn/aarelaxedphylip_rana.phy "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidOut/aarelaxedphylip_rana.phy" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidOut/aarelaxedphylip_rana.phy ] Executing storing read block: TAXA storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidOut/aarelaxedphylip_rana.phy "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "-faaphylipinterleaved" "/<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidIn/aaphylipinterleaved_emboss.phy" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidIn/aaphylipinterleaved_emboss.phy ] Executing storing implied block: TAXA storing read block: DATA ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidIn/aaphylipinterleaved_emboss.phy "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidOut/aaphylipinterleaved_emboss.phy" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidOut/aaphylipinterleaved_emboss.phy ] Executing storing read block: TAXA storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidOut/aaphylipinterleaved_emboss.phy "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "-frelaxedphyliptree" "/<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidIn/relaxedphyliptree_q.phy" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidIn/relaxedphyliptree_q.phy ] Executing storing implied block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidIn/relaxedphyliptree_q.phy "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidOut/relaxedphyliptree_q.phy" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidOut/relaxedphyliptree_q.phy ] Executing storing read block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidOut/relaxedphyliptree_q.phy "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "-faaphylip" "/<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidIn/aaphylip_emboss.phy" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidIn/aaphylip_emboss.phy ] Executing storing implied block: TAXA storing read block: DATA ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidIn/aaphylip_emboss.phy "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidOut/aaphylip_emboss.phy" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidOut/aaphylip_emboss.phy ] Executing storing read block: TAXA storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidOut/aaphylip_emboss.phy "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "-fphyliptree" "/<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidIn/phyliptree_simple.phy" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidIn/phyliptree_simple.phy ] Executing storing implied block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidIn/phyliptree_simple.phy "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidOut/phyliptree_simple.phy" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidOut/phyliptree_simple.phy ] Executing storing read block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidOut/phyliptree_simple.phy "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "-fdnarelaxedphylip" "/<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidIn/dnarelaxedphylip_brana.phy" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidIn/dnarelaxedphylip_brana.phy ] Executing storing implied block: TAXA storing read block: DATA ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidIn/dnarelaxedphylip_brana.phy "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidOut/dnarelaxedphylip_brana.phy" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidOut/dnarelaxedphylip_brana.phy ] Executing storing read block: TAXA storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidOut/dnarelaxedphylip_brana.phy "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "-fdnarelaxedphylip" "/<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidIn/dnarelaxedphylip_rana.phy" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidIn/dnarelaxedphylip_rana.phy ] Executing storing implied block: TAXA storing read block: DATA ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidIn/dnarelaxedphylip_rana.phy "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidOut/dnarelaxedphylip_rana.phy" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidOut/dnarelaxedphylip_rana.phy ] Executing storing read block: TAXA storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidOut/dnarelaxedphylip_rana.phy "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "-faafasta" "/<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidIn/aafasta_twoprot.fas" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidIn/aafasta_twoprot.fas ] Executing storing implied block: TAXA storing read block: DATA ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidIn/aafasta_twoprot.fas "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidOut/aafasta_twoprot.fas" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidOut/aafasta_twoprot.fas ] Executing storing read block: TAXA storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidOut/aafasta_twoprot.fas "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "-faaaln" "/<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidIn/aaaln_twoprot_undec.aln" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidIn/aaaln_twoprot_undec.aln ] Executing storing implied block: TAXA storing read block: DATA ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidIn/aaaln_twoprot_undec.aln "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidOut/aaaln_twoprot_undec.aln" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidOut/aaaln_twoprot_undec.aln ] Executing storing read block: TAXA storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidOut/aaaln_twoprot_undec.aln "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "-faaaln" "/<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidIn/aaaln_twoprot.aln" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidIn/aaaln_twoprot.aln ] Executing storing implied block: TAXA storing read block: DATA ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidIn/aaaln_twoprot.aln "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidOut/aaaln_twoprot.aln" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidOut/aaaln_twoprot.aln ] Executing storing read block: TAXA storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalValidOut/aaaln_twoprot.aln /usr/bin/python ../../test/roundTripNCLTest.py -i -e ../../example/normalizer/NEXUSnormalizer ../../test/ExternalInvalidIn "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "-faarelaxedphylip" "/<>/libncl-2.1.21+git20190531.feceb81/test/ExternalInvalidIn/aarelaxedphylip_rana.phy" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalInvalidIn/aarelaxedphylip_rana.phy ] Executing Error: Sequence longer than 1976 found for taxon temporariaDMH84R1. The character "o" was found, and will be ignored. If the file position of this error corresponds to sequences for the next taxon in the matrix, then that is an indication that the sequences for taxon temporariaDMH84R1 are too short. at line 3, column (approximately) 2 (and file position 2011) "/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer/NEXUSnormalizer" "-s2" "-fdnarelaxedphylip" "/<>/libncl-2.1.21+git20190531.feceb81/test/ExternalInvalidIn/dnarelaxedphylip_rana.phy" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/ExternalInvalidIn/dnarelaxedphylip_rana.phy ] Executing Error: Illegal state code "q" found when reading site 2 for taxon grylioMVZ175945 at line 12, column (approximately) 28 (and file position 20065) /usr/bin/python ../../test/roundTripNCLTest.py -a ../../example/normalizer/NEXUSnormalizer /sbuild-nonexistent/.ncl_round_triprc does not exist. Test stepped skipped. make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer' make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer' Making check in ot-subtree make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/ot-subtree' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/ot-subtree' Making check in ot-tree-inspect make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/ot-tree-inspect' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/ot-tree-inspect' Making check in outdeg1count make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/outdeg1count' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/outdeg1count' Making check in patristic make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/patristic' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/patristic' Making check in phylobaseinterface make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/phylobaseinterface' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/phylobaseinterface' Making check in polytomy-count make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/polytomy-count' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/polytomy-count' Making check in splitsinfile make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/splitsinfile' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/splitsinfile' Making check in subsetter make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/subsetter' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/subsetter' Making check in translate make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/translate' make check-local make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/translate' /usr/bin/python ../../test/roundTripNCLTest.py -o ../../example/translate/NEXUStranslate ../../test/TranslateIn ../../test/TranslateOut "/<>/libncl-2.1.21+git20190531.feceb81/example/translate/NEXUStranslate" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/TranslateIn/bglobinoof.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/TranslateIn/bglobinoof.nex ] Executing storing implied block: TAXA storing read block: DATA storing read block: CODONS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/translate/NEXUStranslate succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/TranslateIn/bglobinoof.nex "/<>/libncl-2.1.21+git20190531.feceb81/example/translate/NEXUStranslate" "-s2" "/<>/libncl-2.1.21+git20190531.feceb81/test/TranslateIn/bglobin.nex" [Reading /<>/libncl-2.1.21+git20190531.feceb81/test/TranslateIn/bglobin.nex ] Executing storing implied block: TAXA storing read block: DATA storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20190531.feceb81/example/translate/NEXUStranslate succeeded for /<>/libncl-2.1.21+git20190531.feceb81/test/TranslateIn/bglobin.nex make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/translate' make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/translate' make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example' make[3]: Nothing to be done for 'check-am'. make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example' make[2]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example' Making check in test make[2]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/test' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/test' make[2]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81' make[2]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81' make[1]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a make -j1 install DESTDIR=/<>/libncl-2.1.21\+git20190531.feceb81/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81' Making install in ncl make[2]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/ncl' make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/ncl' /bin/mkdir -p '/<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/lib/arm-linux-gnueabihf' /bin/bash ../libtool --mode=install /usr/bin/install -c libncl.la '/<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/lib/arm-linux-gnueabihf' libtool: install: /usr/bin/install -c .libs/libncl.so.2.0.0 /<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/lib/arm-linux-gnueabihf/libncl.so.2.0.0 libtool: install: (cd /<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libncl.so.2.0.0 libncl.so.2 || { rm -f libncl.so.2 && ln -s libncl.so.2.0.0 libncl.so.2; }; }) libtool: install: (cd /<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libncl.so.2.0.0 libncl.so || { rm -f libncl.so && ln -s libncl.so.2.0.0 libncl.so; }; }) libtool: install: /usr/bin/install -c .libs/libncl.lai /<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/lib/arm-linux-gnueabihf/libncl.la libtool: install: /usr/bin/install -c .libs/libncl.a /<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/lib/arm-linux-gnueabihf/libncl.a libtool: install: chmod 644 /<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/lib/arm-linux-gnueabihf/libncl.a libtool: install: ranlib /<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/lib/arm-linux-gnueabihf/libncl.a libtool: warning: remember to run 'libtool --finish /usr/lib/arm-linux-gnueabihf' /bin/mkdir -p '/<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/include/ncl' /usr/bin/install -c -m 644 ncl.h nxsallocatematrix.h nxsassumptionsblock.h nxsblock.cpp nxsblock.h nxscharactersblock.h nxscdiscretematrix.h nxscxxdiscretematrix.h nxsdatablock.h nxsdefs.h nxsdiscretedatum.h nxsdistancedatum.h nxsdistancesblock.h nxsexception.h nxsmultiformat.h nxspublicblocks.h nxsreader.h nxssetreader.h nxsstring.h nxstaxablock.h nxstaxaassociationblock.h nxstoken.h nxstreesblock.h nxsunalignedblock.h nxsutilcopy.h '/<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/include/ncl' make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/ncl' make[2]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/ncl' Making install in example make[2]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example' Making install in basiccmdline make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/basiccmdline' make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/basiccmdline' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/basiccmdline' make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/basiccmdline' Making install in check-taxo-nodes make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/check-taxo-nodes' make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/check-taxo-nodes' /bin/mkdir -p '/<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c checktaxonnodes '/<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/bin' libtool: warning: '../../ncl/libncl.la' has not been installed in '/usr/lib/arm-linux-gnueabihf' libtool: install: /usr/bin/install -c .libs/checktaxonnodes /<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/bin/checktaxonnodes make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/check-taxo-nodes' make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/check-taxo-nodes' Making install in compressor make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/compressor' make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/compressor' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/compressor' make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/compressor' Making install in find-unsupported-edges make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/find-unsupported-edges' make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/find-unsupported-edges' /bin/mkdir -p '/<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c findunsupportededges '/<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/bin' libtool: warning: '../../ncl/libncl.la' has not been installed in '/usr/lib/arm-linux-gnueabihf' libtool: install: /usr/bin/install -c .libs/findunsupportededges /<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/bin/findunsupportededges make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/find-unsupported-edges' make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/find-unsupported-edges' Making install in gapcode make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/gapcode' make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/gapcode' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/gapcode' make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/gapcode' Making install in nclsimplest make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/nclsimplest' make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/nclsimplest' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/nclsimplest' make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/nclsimplest' Making install in ncltest make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/ncltest' make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/ncltest' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/ncltest' make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/ncltest' Making install in normalizer make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer' make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer' /bin/mkdir -p '/<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c NEXUSnormalizer NEXUSvalidator NCLconverter '/<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/bin' libtool: warning: '../../ncl/libncl.la' has not been installed in '/usr/lib/arm-linux-gnueabihf' libtool: install: /usr/bin/install -c .libs/NEXUSnormalizer /<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/bin/NEXUSnormalizer libtool: warning: '../../ncl/libncl.la' has not been installed in '/usr/lib/arm-linux-gnueabihf' libtool: install: /usr/bin/install -c .libs/NEXUSvalidator /<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/bin/NEXUSvalidator libtool: warning: '../../ncl/libncl.la' has not been installed in '/usr/lib/arm-linux-gnueabihf' libtool: install: /usr/bin/install -c .libs/NCLconverter /<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/bin/NCLconverter make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer' make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/normalizer' Making install in ot-subtree make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/ot-subtree' make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/ot-subtree' /bin/mkdir -p '/<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c otsubtree '/<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/bin' libtool: warning: '../../ncl/libncl.la' has not been installed in '/usr/lib/arm-linux-gnueabihf' libtool: install: /usr/bin/install -c .libs/otsubtree /<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/bin/otsubtree make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/ot-subtree' make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/ot-subtree' Making install in ot-tree-inspect make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/ot-tree-inspect' make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/ot-tree-inspect' /bin/mkdir -p '/<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c otTreeInspect '/<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/bin' libtool: warning: '../../ncl/libncl.la' has not been installed in '/usr/lib/arm-linux-gnueabihf' libtool: install: /usr/bin/install -c .libs/otTreeInspect /<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/bin/otTreeInspect make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/ot-tree-inspect' make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/ot-tree-inspect' Making install in outdeg1count make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/outdeg1count' make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/outdeg1count' /bin/mkdir -p '/<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c outdeg1count '/<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/bin' libtool: warning: '../../ncl/libncl.la' has not been installed in '/usr/lib/arm-linux-gnueabihf' libtool: install: /usr/bin/install -c .libs/outdeg1count /<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/bin/outdeg1count make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/outdeg1count' make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/outdeg1count' Making install in patristic make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/patristic' make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/patristic' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/patristic' make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/patristic' Making install in phylobaseinterface make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/phylobaseinterface' make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/phylobaseinterface' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/phylobaseinterface' make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/phylobaseinterface' Making install in polytomy-count make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/polytomy-count' make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/polytomy-count' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/polytomy-count' make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/polytomy-count' Making install in splitsinfile make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/splitsinfile' make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/splitsinfile' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/splitsinfile' make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/splitsinfile' Making install in subsetter make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/subsetter' make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/subsetter' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/subsetter' make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/subsetter' Making install in translate make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/translate' make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example/translate' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/translate' make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example/translate' make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example' make[4]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/example' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example' make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example' make[2]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/example' Making install in test make[2]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/test' make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81/test' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/test' make[2]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81/test' make[2]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81' make[3]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig' /usr/bin/install -c -m 644 nclv2.1.pc '/<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig' make[3]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81' make[2]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81' make[1]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81' debian/rules override_dh_install make[1]: Entering directory '/<>/libncl-2.1.21+git20190531.feceb81' dh_install d-shlibmove --commit \ --multiarch \ --devunversioned \ --movedev "debian/tmp/usr/include/ncl/*.h" usr/include/ncl \ --movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/arm-linux-gnueabihf/pkgconfig \ debian/tmp/usr/lib/*/libncl.so Library package automatic movement utility set -e install -d -m 755 debian/libncl-dev/usr/lib/arm-linux-gnueabihf install -d -m 755 debian/libncl2/usr/lib/arm-linux-gnueabihf mv debian/tmp/usr/lib/arm-linux-gnueabihf/libncl.a debian/libncl-dev/usr/lib/arm-linux-gnueabihf mv debian/tmp/usr/lib/arm-linux-gnueabihf/libncl.la debian/libncl-dev/usr/lib/arm-linux-gnueabihf || true mv debian/tmp/usr/lib/arm-linux-gnueabihf/libncl.so debian/libncl-dev/usr/lib/arm-linux-gnueabihf mv /<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/lib/arm-linux-gnueabihf/libncl.so.2 debian/libncl2/usr/lib/arm-linux-gnueabihf mv /<>/libncl-2.1.21+git20190531.feceb81/debian/tmp/usr/lib/arm-linux-gnueabihf/libncl.so.2.0.0 debian/libncl2/usr/lib/arm-linux-gnueabihf PKGDEV=libncl-dev PKGSHL=libncl2 install -d -m 755 debian/libncl-dev/usr/include/ncl mv debian/tmp/usr/include/ncl/*.h debian/libncl-dev/usr/include/ncl install -d -m 755 debian/libncl-dev/usr/lib/arm-linux-gnueabihf/pkgconfig mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libncl-dev/usr/lib/arm-linux-gnueabihf/pkgconfig rm -f debian/tmp/usr/include/ncl/nxsblock.cpp make[1]: Leaving directory '/<>/libncl-2.1.21+git20190531.feceb81' dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: debian/ncl-tools/usr/bin/checktaxonnodes contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/ncl-tools/usr/bin/otTreeInspect contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/ncl-tools/usr/bin/NEXUSvalidator contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libncl2/usr/lib/arm-linux-gnueabihf/libncl.so.2.0.0 found in none of the libraries dpkg-shlibdeps: warning: debian/ncl-tools/usr/bin/NEXUSnormalizer contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/ncl-tools/usr/bin/outdeg1count contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/ncl-tools/usr/bin/otsubtree contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/ncl-tools/usr/bin/NCLconverter contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/ncl-tools/usr/bin/findunsupportededges contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: Depends field of package libncl-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 144 INFO: pkgstriptranslations version 144 INFO: pkgstriptranslations version 144 pkgstriptranslations: processing libncl-dev (in debian/libncl-dev); do_strip: , oemstrip: pkgstriptranslations: processing ncl-tools (in debian/ncl-tools); do_strip: , oemstrip: pkgstriptranslations: processing libncl2 (in debian/libncl2); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/ncl-tools/DEBIAN/control, package ncl-tools, directory debian/ncl-tools Searching for duplicated docs in dependency libncl2... pkgstripfiles: processing control file: debian/libncl-dev/DEBIAN/control, package libncl-dev, directory debian/libncl-dev INFO: pkgstripfiles: waiting for lock (libncl-dev) ... symlinking changelog.Debian.gz in ncl-tools to file in libncl2 pkgstripfiles: processing control file: debian/libncl2/DEBIAN/control, package libncl2, directory debian/libncl2 INFO: pkgstripfiles: waiting for lock (libncl2) ... pkgstripfiles: Running PNG optimization (using 4 cpus) for package ncl-tools ... pkgstripfiles: No PNG files. dpkg-deb: building package 'ncl-tools' in '../ncl-tools_2.1.21+git20190531.feceb81-1_armhf.deb'. INFO: pkgstripfiles: waiting for lock (libncl-dev) ... pkgstripfiles: Running PNG optimization (using 4 cpus) for package libncl2 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libncl2' in '../libncl2_2.1.21+git20190531.feceb81-1_armhf.deb'. INFO: pkgstriptranslations version 144 pkgstriptranslations: processing ncl-tools-dbgsym (in debian/.debhelper/ncl-tools/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " Searching for duplicated docs in dependency libncl2... symlinking changelog.Debian.gz in libncl-dev to file in libncl2 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libncl-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libncl-dev' in '../libncl-dev_2.1.21+git20190531.feceb81-1_armhf.deb'. pkgstripfiles: processing control file: debian/.debhelper/ncl-tools/dbgsym-root/DEBIAN/control, package ncl-tools-dbgsym, directory debian/.debhelper/ncl-tools/dbgsym-root dpkg-deb: building package 'ncl-tools-dbgsym' in 'debian/.debhelper/scratch-space/build-ncl-tools/ncl-tools-dbgsym_2.1.21+git20190531.feceb81-1_armhf.deb'. INFO: pkgstriptranslations version 144 pkgstriptranslations: processing libncl2-dbgsym (in debian/.debhelper/libncl2/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/libncl2/dbgsym-root/DEBIAN/control, package libncl2-dbgsym, directory debian/.debhelper/libncl2/dbgsym-root dpkg-deb: building package 'libncl2-dbgsym' in 'debian/.debhelper/scratch-space/build-libncl2/libncl2-dbgsym_2.1.21+git20190531.feceb81-1_armhf.deb'. Renaming ncl-tools-dbgsym_2.1.21+git20190531.feceb81-1_armhf.deb to ncl-tools-dbgsym_2.1.21+git20190531.feceb81-1_armhf.ddeb Renaming libncl2-dbgsym_2.1.21+git20190531.feceb81-1_armhf.deb to libncl2-dbgsym_2.1.21+git20190531.feceb81-1_armhf.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../libncl_2.1.21+git20190531.feceb81-1_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20190820-1721 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libncl_2.1.21+git20190531.feceb81-1_armhf.changes: -------------------------------------------------- Format: 1.8 Date: Tue, 20 Aug 2019 15:05:39 +0200 Source: libncl Binary: libncl-dev libncl2 ncl-tools Architecture: armhf Version: 2.1.21+git20190531.feceb81-1 Distribution: eoan-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: libncl-dev - NEXUS Class Library (static lib and header files) libncl2 - NEXUS Class Library ncl-tools - tools to deal with NEXUS files Closes: 925752 Changes: libncl (2.1.21+git20190531.feceb81-1) unstable; urgency=medium . * Fix symbols file Closes: #925752 * New upstream version * debhelper-compat 12 * Standards-Version: 4.4.0 * Install pkgconfig file Checksums-Sha1: eea78ae0f46adbbd4e55cfa4626de6ea2039ff7d 515892 libncl-dev_2.1.21+git20190531.feceb81-1_armhf.deb 808b249c64d7fe2f530ae218b9edba24a80734ca 7850988 libncl2-dbgsym_2.1.21+git20190531.feceb81-1_armhf.ddeb 62c729fc4d42b782cb2f8e59f99033b2ae6dd2b2 329388 libncl2_2.1.21+git20190531.feceb81-1_armhf.deb 8fa3e2f1c17ebbf8765b66d68314c7311880727b 6982 libncl_2.1.21+git20190531.feceb81-1_armhf.buildinfo 643d6d019896feebbff402f8cc27d56d052ec679 2773072 ncl-tools-dbgsym_2.1.21+git20190531.feceb81-1_armhf.ddeb 85d7b63049a784af5bf2a7101a8d8f2f077426be 127892 ncl-tools_2.1.21+git20190531.feceb81-1_armhf.deb Checksums-Sha256: 67b3388a18fc9d8f3cdcc8983c85e2b10d4b9e7cc5fe41adb7df49421101e842 515892 libncl-dev_2.1.21+git20190531.feceb81-1_armhf.deb efada9046c9d8b55b599c2382d383fe54c91875e02d3a690c225c676a5a67571 7850988 libncl2-dbgsym_2.1.21+git20190531.feceb81-1_armhf.ddeb b1936793efc8771a86c4d106782ff63401b33559a5c0ada9d72ca3a70b27434b 329388 libncl2_2.1.21+git20190531.feceb81-1_armhf.deb 47c3adc4d70e60a2f005062e42c03f155836d804bfdb7948f0daa3bb5ac816cc 6982 libncl_2.1.21+git20190531.feceb81-1_armhf.buildinfo 7ab1f6efbe5977a906c11e79c7c1dd1aebfe3a1758f02d70073b75e3b611c00e 2773072 ncl-tools-dbgsym_2.1.21+git20190531.feceb81-1_armhf.ddeb 747769185cae62d79fc828c7602c85521a60055a04b80f0401dbfe40364cfea0 127892 ncl-tools_2.1.21+git20190531.feceb81-1_armhf.deb Files: 7e6a9556562456adba55c47ae10378fe 515892 libdevel optional libncl-dev_2.1.21+git20190531.feceb81-1_armhf.deb 05f57a5f87ced5b433d7293dfb31f87b 7850988 debug optional libncl2-dbgsym_2.1.21+git20190531.feceb81-1_armhf.ddeb a4813f42533a2abec806f592ed7f870f 329388 libs optional libncl2_2.1.21+git20190531.feceb81-1_armhf.deb 6a2213cd0008afddfae06d2fd8a4aa62 6982 science optional libncl_2.1.21+git20190531.feceb81-1_armhf.buildinfo d02947be718175a5c6411fd14ed75981 2773072 debug optional ncl-tools-dbgsym_2.1.21+git20190531.feceb81-1_armhf.ddeb 4d5900cf494b4899b9b3d93b1fd38961 127892 science optional ncl-tools_2.1.21+git20190531.feceb81-1_armhf.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libncl-dev_2.1.21+git20190531.feceb81-1_armhf.deb ------------------------------------------------- new debian package, version 2.0. size 515892 bytes: control archive=1532 bytes. 785 bytes, 20 lines control 1893 bytes, 28 lines md5sums Package: libncl-dev Source: libncl Version: 2.1.21+git20190531.feceb81-1 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 2642 Depends: libncl2 (= 2.1.21+git20190531.feceb81-1) Section: libdevel Priority: optional Homepage: https://github.com/mtholder/ncl Description: NEXUS Class Library (static lib and header files) The NEXUS Class Library is a C++ library for parsing NEXUS files. . The NEXUS file format is widely used in bioinformatics. Several popular phylogenetic programs such as Paup, MrBayes, Mesquite, and MacClade use this format. . This package contains the static library and header files of the NEXUS library. drwxr-xr-x root/root 0 2019-08-20 13:05 ./ drwxr-xr-x root/root 0 2019-08-20 13:05 ./usr/ drwxr-xr-x root/root 0 2019-08-20 13:05 ./usr/include/ drwxr-xr-x root/root 0 2019-08-20 13:05 ./usr/include/ncl/ -rw-r--r-- root/root 2384 2019-08-20 13:05 ./usr/include/ncl/ncl.h -rw-r--r-- root/root 5928 2019-08-20 13:05 ./usr/include/ncl/nxsallocatematrix.h -rw-r--r-- root/root 14934 2019-08-20 13:05 ./usr/include/ncl/nxsassumptionsblock.h -rw-r--r-- root/root 15451 2019-08-20 13:05 ./usr/include/ncl/nxsblock.h -rw-r--r-- root/root 3814 2019-08-20 13:05 ./usr/include/ncl/nxscdiscretematrix.h -rw-r--r-- root/root 77971 2019-08-20 13:05 ./usr/include/ncl/nxscharactersblock.h -rw-r--r-- root/root 11249 2019-08-20 13:05 ./usr/include/ncl/nxscxxdiscretematrix.h -rw-r--r-- root/root 2145 2019-08-20 13:05 ./usr/include/ncl/nxsdatablock.h -rw-r--r-- root/root 4059 2019-08-20 13:05 ./usr/include/ncl/nxsdefs.h -rw-r--r-- root/root 2098 2019-08-20 13:05 ./usr/include/ncl/nxsdiscretedatum.h -rw-r--r-- root/root 1328 2019-08-20 13:05 ./usr/include/ncl/nxsdistancedatum.h -rw-r--r-- root/root 7403 2019-08-20 13:05 ./usr/include/ncl/nxsdistancesblock.h -rw-r--r-- root/root 3060 2019-08-20 13:05 ./usr/include/ncl/nxsexception.h -rw-r--r-- root/root 10912 2019-08-20 13:05 ./usr/include/ncl/nxsmultiformat.h -rw-r--r-- root/root 30636 2019-08-20 13:05 ./usr/include/ncl/nxspublicblocks.h -rw-r--r-- root/root 26955 2019-08-20 13:05 ./usr/include/ncl/nxsreader.h -rw-r--r-- root/root 4284 2019-08-20 13:05 ./usr/include/ncl/nxssetreader.h -rw-r--r-- root/root 21693 2019-08-20 13:05 ./usr/include/ncl/nxsstring.h -rw-r--r-- root/root 4646 2019-08-20 13:05 ./usr/include/ncl/nxstaxaassociationblock.h -rw-r--r-- root/root 16886 2019-08-20 13:05 ./usr/include/ncl/nxstaxablock.h -rw-r--r-- root/root 31363 2019-08-20 13:05 ./usr/include/ncl/nxstoken.h -rw-r--r-- root/root 35765 2019-08-20 13:05 ./usr/include/ncl/nxstreesblock.h -rw-r--r-- root/root 10644 2019-08-20 13:05 ./usr/include/ncl/nxsunalignedblock.h -rw-r--r-- root/root 9167 2019-08-20 13:05 ./usr/include/ncl/nxsutilcopy.h drwxr-xr-x root/root 0 2019-08-20 13:05 ./usr/lib/ drwxr-xr-x root/root 0 2019-08-20 13:05 ./usr/lib/arm-linux-gnueabihf/ -rw-r--r-- root/root 2320614 2019-08-20 13:05 ./usr/lib/arm-linux-gnueabihf/libncl.a -rw-r--r-- root/root 939 2019-08-20 13:05 ./usr/lib/arm-linux-gnueabihf/libncl.la lrwxrwxrwx root/root 0 2019-08-20 13:05 ./usr/lib/arm-linux-gnueabihf/libncl.so -> libncl.so.2.0.0 drwxr-xr-x root/root 0 2019-08-20 13:05 ./usr/lib/arm-linux-gnueabihf/pkgconfig/ -rw-r--r-- root/root 308 2019-08-20 13:05 ./usr/lib/arm-linux-gnueabihf/pkgconfig/nclv2.1.pc drwxr-xr-x root/root 0 2019-08-20 13:05 ./usr/share/ drwxr-xr-x root/root 0 2019-08-20 13:05 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-08-20 13:05 ./usr/share/doc/libncl-dev/ lrwxrwxrwx root/root 0 2019-08-20 13:05 ./usr/share/doc/libncl-dev/changelog.Debian.gz -> ../libncl2/changelog.Debian.gz -rw-r--r-- root/root 1157 2019-08-20 13:05 ./usr/share/doc/libncl-dev/copyright libncl2_2.1.21+git20190531.feceb81-1_armhf.deb ---------------------------------------------- new debian package, version 2.0. size 329388 bytes: control archive=948 bytes. 729 bytes, 19 lines control 220 bytes, 3 lines md5sums 49 bytes, 1 lines shlibs 72 bytes, 2 lines triggers Package: libncl2 Source: libncl Version: 2.1.21+git20190531.feceb81-1 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 750 Depends: libc6 (>= 2.15), libgcc1 (>= 1:3.5), libstdc++6 (>= 9) Section: libs Priority: optional Homepage: https://github.com/mtholder/ncl Description: NEXUS Class Library The NEXUS Class Library is a C++ library for parsing NEXUS files. . The NEXUS file format is widely used in bioinformatics. Several popular phylogenetic programs such as Paup, MrBayes, Mesquite, and MacClade use this format. . This package contains the dynamic NEXUS library. drwxr-xr-x root/root 0 2019-08-20 13:05 ./ drwxr-xr-x root/root 0 2019-08-20 13:05 ./usr/ drwxr-xr-x root/root 0 2019-08-20 13:05 ./usr/lib/ drwxr-xr-x root/root 0 2019-08-20 13:05 ./usr/lib/arm-linux-gnueabihf/ lrwxrwxrwx root/root 0 2019-08-20 13:05 ./usr/lib/arm-linux-gnueabihf/libncl.so.2 -> libncl.so.2.0.0 -rw-r--r-- root/root 753356 2019-08-20 13:05 ./usr/lib/arm-linux-gnueabihf/libncl.so.2.0.0 drwxr-xr-x root/root 0 2019-08-20 13:05 ./usr/share/ drwxr-xr-x root/root 0 2019-08-20 13:05 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-08-20 13:05 ./usr/share/doc/libncl2/ -rw-r--r-- root/root 752 2019-08-20 13:05 ./usr/share/doc/libncl2/changelog.Debian.gz -rw-r--r-- root/root 1157 2019-08-20 13:05 ./usr/share/doc/libncl2/copyright ncl-tools_2.1.21+git20190531.feceb81-1_armhf.deb ------------------------------------------------ new debian package, version 2.0. size 127892 bytes: control archive=1108 bytes. 734 bytes, 17 lines control 740 bytes, 12 lines md5sums Package: ncl-tools Source: libncl Version: 2.1.21+git20190531.feceb81-1 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 382 Depends: libc6 (>= 2.4), libgcc1 (>= 1:3.5), libncl2 (>= 2.1.21+git20190531.feceb81), libstdc++6 (>= 5.2) Section: science Priority: optional Homepage: https://github.com/mtholder/ncl Description: tools to deal with NEXUS files The NEXUS Class Library is a C++ library for parsing NEXUS files. . The NEXUS file format is widely used in bioinformatics. Several popular phylogenetic programs such as Paup, MrBayes, Mesquite, and MacClade use this format. drwxr-xr-x root/root 0 2019-08-20 13:05 ./ drwxr-xr-x root/root 0 2019-08-20 13:05 ./usr/ drwxr-xr-x root/root 0 2019-08-20 13:05 ./usr/bin/ -rwxr-xr-x root/root 141000 2019-08-20 13:05 ./usr/bin/NCLconverter -rwxr-xr-x root/root 26276 2019-08-20 13:05 ./usr/bin/NEXUSnormalizer -rwxr-xr-x root/root 26276 2019-08-20 13:05 ./usr/bin/NEXUSvalidator -rwxr-xr-x root/root 38552 2019-08-20 13:05 ./usr/bin/checktaxonnodes -rwxr-xr-x root/root 54940 2019-08-20 13:05 ./usr/bin/findunsupportededges -rwxr-xr-x root/root 30368 2019-08-20 13:05 ./usr/bin/otTreeInspect -rwxr-xr-x root/root 26264 2019-08-20 13:05 ./usr/bin/otsubtree -rwxr-xr-x root/root 26268 2019-08-20 13:05 ./usr/bin/outdeg1count drwxr-xr-x root/root 0 2019-08-20 13:05 ./usr/share/ drwxr-xr-x root/root 0 2019-08-20 13:05 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-08-20 13:05 ./usr/share/doc/ncl-tools/ lrwxrwxrwx root/root 0 2019-08-20 13:05 ./usr/share/doc/ncl-tools/changelog.Debian.gz -> ../libncl2/changelog.Debian.gz -rw-r--r-- root/root 1157 2019-08-20 13:05 ./usr/share/doc/ncl-tools/copyright drwxr-xr-x root/root 0 2019-08-20 13:05 ./usr/share/man/ drwxr-xr-x root/root 0 2019-08-20 13:05 ./usr/share/man/man1/ -rw-r--r-- root/root 1674 2019-08-20 13:05 ./usr/share/man/man1/NCLconverter.1.gz -rw-r--r-- root/root 1094 2019-08-20 13:05 ./usr/share/man/man1/NEXUSnormalizer.1.gz -rw-r--r-- root/root 1054 2019-08-20 13:05 ./usr/share/man/man1/NEXUSvalidator.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build-Space: 345348 Build-Time: 559 Distribution: eoan-proposed Host Architecture: armhf Install-Time: 26 Job: libncl_2.1.21+git20190531.feceb81-1.dsc Machine Architecture: arm64 Package: libncl Package-Time: 588 Source-Version: 2.1.21+git20190531.feceb81-1 Space: 345348 Status: successful Version: 2.1.21+git20190531.feceb81-1 -------------------------------------------------------------------------------- Finished at 20190820-1721 Build needed 00:09:48, 345348k disc space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=eoan --arch=armhf PACKAGEBUILD-17445634 Scanning for processes to kill in build PACKAGEBUILD-17445634