libfreecontact-perl 0.08-7build1 source package in Ubuntu
Changelog
libfreecontact-perl (0.08-7build1) focal; urgency=medium * No-change rebuild for the perl update. -- Matthias Klose <email address hidden> Fri, 18 Oct 2019 19:31:38 +0000
Upload details
- Uploaded by:
- Matthias Klose
- Uploaded to:
- Focal
- Original maintainer:
- Debian Med
- Architectures:
- any
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
Series | Published | Component | Section |
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Downloads
File | Size | SHA-256 Checksum |
---|---|---|
libfreecontact-perl_0.08.orig.tar.gz | 57.3 KiB | 7386762985b9e36ec13379948528f1f18e49cf799ba5436a46aa60e9cb041911 |
libfreecontact-perl_0.08-7build1.debian.tar.xz | 3.9 KiB | fd5e3c2d9729785958316ddff40130a829e30d071d975d7c096a31ba3f4e557a |
libfreecontact-perl_0.08-7build1.dsc | 2.1 KiB | 649818da55b6faf8b9fe6d63858258979a1f317f9819a7b714a9a73a2aa53975 |
Available diffs
- diff from 0.08-7 (in Debian) to 0.08-7build1 (326 bytes)
Binary packages built by this source
- libfreecontact-perl: fast protein contact predictor - binding for Perl
FreeContact is a protein residue contact predictor optimized for speed.
Its input is a multiple sequence alignment. FreeContact can function as an
accelerated drop-in for the published contact predictors
EVfold-mfDCA of DS. Marks (2011) and
PSICOV of D. Jones (2011).
.
FreeContact is accelerated by a combination of vector instructions, multiple
threads, and faster implementation of key parts.
Depending on the alignment, 8-fold or higher speedups are possible.
.
A sufficiently large alignment is required for meaningful results.
As a minimum, an alignment with an effective (after-weighting) sequence count
bigger than the length of the query sequence should be used. Alignments with
tens of thousands of (effective) sequences are considered good input.
.
jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite
can be used to generate the alignments, for example.
.
This package contains the Perl binding.
- libfreecontact-perl-dbgsym: debug symbols for libfreecontact-perl