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libfastahack package

libfastahack 1.0.0+dfsg-11 source package in Ubuntu

Changelog

libfastahack (1.0.0+dfsg-11) unstable; urgency=medium

  * d/libfastahack0.symbols: mark optional symbols.
    The compiler is leaking a certain number of functions to the library's
    symbols table.  They are variable depending on compiler version, and
    build options such as link time optimization tend to clean them up,
    but in both cases this tends to interfere with the existing list.
    (Closes: #1015486)
  * autoconf.patch: mark forwarding unneeded.
  * d/control: declare compliance to standards version 4.6.2.

 -- Étienne Mollier <email address hidden>  Tue, 05 Dec 2023 16:59:42 +0100

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Noble release universe misc

Downloads

File Size SHA-256 Checksum
libfastahack_1.0.0+dfsg-11.dsc 2.3 KiB 783b03887c6f003ece983e6dbcb99e608be9549367e141446a1b38973afb0b77
libfastahack_1.0.0+dfsg.orig.tar.xz 8.9 KiB 41e512b34158564ae83355a1e11a5ae366f3ca9ac4a31ef80f3f26f3438a91af
libfastahack_1.0.0+dfsg-11.debian.tar.xz 7.4 KiB aec68f5790fe2b9b7ac7557b1182987bf1a3a61b9f24bba99d6f7a5a5270ce23

Available diffs

No changes file available.

Binary packages built by this source

fastahack: utility for indexing and sequence extraction from FASTA files

 fastahack is a small application for indexing and extracting sequences and
 subsequences from FASTA files. The included Fasta.cpp library provides a FASTA
 reader and indexer that can be embedded into applications which would benefit
 from directly reading subsequences from FASTA files. The library automatically
 handles index file generation and use.
 .
 Features:
  * FASTA index (.fai) generation for FASTA files
  * Sequence extraction
  * Subsequence extraction
  * Sequence statistics (currently only entropy is provided)
 .
 Sequence and subsequence extraction use fseek64 to provide fastest-possible
 extraction without RAM-intensive file loading operations. This makes fastahack
 a useful tool for bioinformaticists who need to quickly extract many
 subsequences from a reference FASTA sequence.

fastahack-dbgsym: debug symbols for fastahack
libfastahack-dev: library for indexing and sequence extraction from FASTA files (devel)

 fastahack is a small application for indexing and extracting sequences and
 subsequences from FASTA files. The included Fasta.cpp library provides a FASTA
 reader and indexer that can be embedded into applications which would benefit
 from directly reading subsequences from FASTA files. The library automatically
 handles index file generation and use.
 .
 Features:
  * FASTA index (.fai) generation for FASTA files
  * Sequence extraction
  * Subsequence extraction
  * Sequence statistics (currently only entropy is provided)
 .
 Sequence and subsequence extraction use fseek64 to provide fastest-possible
 extraction without RAM-intensive file loading operations. This makes fastahack
 a useful tool for bioinformaticists who need to quickly extract many
 subsequences from a reference FASTA sequence.
 .
 This is the development package containing the statically linked
 library and the header files.

libfastahack0: library for indexing and sequence extraction from FASTA files (lib)

 fastahack is a small application for indexing and extracting sequences and
 subsequences from FASTA files. The included Fasta.cpp library provides a FASTA
 reader and indexer that can be embedded into applications which would benefit
 from directly reading subsequences from FASTA files. The library automatically
 handles index file generation and use.
 .
 Features:
  * FASTA index (.fai) generation for FASTA files
  * Sequence extraction
  * Subsequence extraction
  * Sequence statistics (currently only entropy is provided)
 .
 Sequence and subsequence extraction use fseek64 to provide fastest-possible
 extraction without RAM-intensive file loading operations. This makes fastahack
 a useful tool for bioinformaticists who need to quickly extract many
 subsequences from a reference FASTA sequence.
 .
 This package contains the dynamic library.

libfastahack0-dbgsym: debug symbols for libfastahack0