https://launchpad.net/ubuntu/+source/libbpp-seq/2.4.1-10/+build/26502253 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-056 5.4.0-155-generic #172-Ubuntu SMP Fri Jul 7 16:13:58 UTC 2023 aarch64 Buildd toolchain package versions: launchpad-buildd_234~642~ubuntu20.04.1 python3-lpbuildd_234~642~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.11 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1.1. Syncing the system clock with the buildd NTP service... 13 Aug 17:10:36 ntpdate[1957]: adjust time server 10.211.37.1 offset -0.000374 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=mantic --arch=armhf PACKAGEBUILD-26502253 --image-type chroot /home/buildd/filecache-default/232c5f007faca678b94fe1cafd15f5ae1164056a Creating target for build PACKAGEBUILD-26502253 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=mantic --arch=armhf PACKAGEBUILD-26502253 Starting target for build PACKAGEBUILD-26502253 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=mantic --arch=armhf PACKAGEBUILD-26502253 'deb http://ftpmaster.internal/ubuntu mantic main universe' 'deb http://ftpmaster.internal/ubuntu mantic-security main universe' 'deb http://ftpmaster.internal/ubuntu mantic-updates main universe' 'deb http://ftpmaster.internal/ubuntu mantic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-26502253 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=mantic --arch=armhf PACKAGEBUILD-26502253 Updating target for build PACKAGEBUILD-26502253 Get:1 http://ftpmaster.internal/ubuntu mantic InRelease [255 kB] Get:2 http://ftpmaster.internal/ubuntu mantic-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu mantic-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu mantic-proposed InRelease [118 kB] Get:5 http://ftpmaster.internal/ubuntu mantic/main armhf Packages [1328 kB] Get:6 http://ftpmaster.internal/ubuntu mantic/main Translation-en [512 kB] Get:7 http://ftpmaster.internal/ubuntu mantic/universe armhf Packages [14.3 MB] Get:8 http://ftpmaster.internal/ubuntu mantic/universe Translation-en [5971 kB] Get:9 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf Packages [81.5 kB] Get:10 http://ftpmaster.internal/ubuntu mantic-proposed/main Translation-en [32.7 kB] Get:11 http://ftpmaster.internal/ubuntu mantic-proposed/universe armhf Packages [398 kB] Get:12 http://ftpmaster.internal/ubuntu mantic-proposed/universe Translation-en [157 kB] Fetched 23.3 MB in 15s (1521 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: g++-12 libstdc++-12-dev Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: cpp-13 g++-13 gcc-13 gcc-13-base libgcc-13-dev libproc2-0 libsframe1 libstdc++-13-dev systemd-dev The following packages will be upgraded: adduser advancecomp apt base-files bash binutils binutils-arm-linux-gnueabihf binutils-common bsdutils build-essential ca-certificates coreutils cpp cpp-12 dash debconf debianutils diffutils dpkg dpkg-dev e2fsprogs fakeroot findutils g++ g++-12 gcc gcc-12 gcc-12-base gpg gpg-agent gpgconf gpgv grep hostname init init-system-helpers libacl1 libapparmor1 libapt-pkg6.0 libargon2-1 libasan8 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdb5.3 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libext2fs2 libfakeroot libfdisk1 libgcc-12-dev libgcc-s1 libgcrypt20 libgmp10 libgnutls30 libgomp1 libgssapi-krb5-2 libhogweed6 libidn2-0 libip4tc2 libisl23 libk5crypto3 libkmod2 libkrb5-3 libkrb5support0 liblzma5 libmd0 libmount1 libmpfr6 libncurses6 libncursesw6 libnettle8 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libperl5.36 libpng16-16 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage2 libsepol2 libsmartcols1 libsqlite3-0 libss2 libssl3 libstdc++-12-dev libstdc++6 libsystemd-shared libsystemd0 libtasn1-6 libtinfo6 libubsan1 libudev1 libuuid1 libzstd1 linux-libc-dev logsave lsb-base lto-disabled-list mawk mount ncurses-base ncurses-bin openssl perl perl-base perl-modules-5.36 pkgbinarymangler procps readline-common sed sensible-utils systemd systemd-sysv sysvinit-utils tar tzdata usrmerge util-linux util-linux-extra xz-utils zlib1g 144 upgraded, 9 newly installed, 0 to remove and 0 not upgraded. Need to get 129 MB of archives. After this operation, 74.9 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu mantic/main armhf libcrypt-dev armhf 1:4.4.36-2 [120 kB] Get:2 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf libc6-dev armhf 2.38-1ubuntu3 [1348 kB] Get:3 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf libc-dev-bin armhf 2.38-1ubuntu3 [18.9 kB] Get:4 http://ftpmaster.internal/ubuntu mantic/main armhf libcrypt1 armhf 1:4.4.36-2 [92.6 kB] Get:5 http://ftpmaster.internal/ubuntu mantic/main armhf linux-libc-dev armhf 6.3.0-7.7 [1503 kB] Get:6 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf libc6 armhf 2.38-1ubuntu3 [2836 kB] Get:7 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf libc-bin armhf 2.38-1ubuntu3 [533 kB] Get:8 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf gcc-13-base armhf 13.2.0-2ubuntu1 [42.9 kB] Get:9 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf libgcc-s1 armhf 13.2.0-2ubuntu1 [41.4 kB] Get:10 http://ftpmaster.internal/ubuntu mantic/main armhf base-files armhf 13ubuntu1 [73.7 kB] Get:11 http://ftpmaster.internal/ubuntu mantic/main armhf debianutils armhf 5.8-1 [102 kB] Get:12 http://ftpmaster.internal/ubuntu mantic/main armhf bash armhf 5.2.15-2ubuntu1 [671 kB] Get:13 http://ftpmaster.internal/ubuntu mantic/main armhf bsdutils armhf 1:2.38.1-5ubuntu2 [96.3 kB] Get:14 http://ftpmaster.internal/ubuntu mantic/main armhf coreutils armhf 9.1-1ubuntu2 [1290 kB] Get:15 http://ftpmaster.internal/ubuntu mantic/main armhf liblzma5 armhf 5.4.1-0.2 [109 kB] Get:16 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf libstdc++6 armhf 13.2.0-2ubuntu1 [697 kB] Get:17 http://ftpmaster.internal/ubuntu mantic/main armhf libzstd1 armhf 1.5.5+dfsg2-1ubuntu2 [264 kB] Get:18 http://ftpmaster.internal/ubuntu mantic/main armhf libgcrypt20 armhf 1.10.2-2ubuntu1 [455 kB] Get:19 http://ftpmaster.internal/ubuntu mantic/main armhf libacl1 armhf 2.3.1-3 [15.1 kB] Get:20 http://ftpmaster.internal/ubuntu mantic/main armhf libapparmor1 armhf 3.0.8-1ubuntu4 [41.9 kB] Get:21 http://ftpmaster.internal/ubuntu mantic/main armhf libaudit-common all 1:3.1.1-1 [5426 B] Get:22 http://ftpmaster.internal/ubuntu mantic/main armhf libcap-ng0 armhf 0.8.3-1build2 [13.5 kB] Get:23 http://ftpmaster.internal/ubuntu mantic/main armhf libaudit1 armhf 1:3.1.1-1 [43.5 kB] Get:24 http://ftpmaster.internal/ubuntu mantic/main armhf libblkid1 armhf 2.38.1-5ubuntu2 [145 kB] Get:25 http://ftpmaster.internal/ubuntu mantic/main armhf libcap2 armhf 1:2.66-4ubuntu1 [25.2 kB] Get:26 http://ftpmaster.internal/ubuntu mantic/main armhf libip4tc2 armhf 1.8.9-2ubuntu2 [20.2 kB] Get:27 http://ftpmaster.internal/ubuntu mantic/main armhf libperl5.36 armhf 5.36.0-7ubuntu1 [4025 kB] Get:28 http://ftpmaster.internal/ubuntu mantic/main armhf perl armhf 5.36.0-7ubuntu1 [235 kB] Get:29 http://ftpmaster.internal/ubuntu mantic/main armhf perl-base armhf 5.36.0-7ubuntu1 [1636 kB] Get:30 http://ftpmaster.internal/ubuntu mantic/main armhf perl-modules-5.36 all 5.36.0-7ubuntu1 [2984 kB] Get:31 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf libdb5.3 armhf 5.3.28+dfsg2-2 [660 kB] Get:32 http://ftpmaster.internal/ubuntu mantic/main armhf zlib1g armhf 1:1.2.13.dfsg-1ubuntu5 [50.0 kB] Get:33 http://ftpmaster.internal/ubuntu mantic/main armhf debconf all 1.5.82 [125 kB] Get:34 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf libssl3 armhf 3.0.10-1ubuntu2 [1572 kB] Get:35 http://ftpmaster.internal/ubuntu mantic/main armhf libkmod2 armhf 30+20230519-1ubuntu2 [43.5 kB] Get:36 http://ftpmaster.internal/ubuntu mantic/main armhf libpcre2-8-0 armhf 10.42-2 [198 kB] Get:37 http://ftpmaster.internal/ubuntu mantic/main armhf libselinux1 armhf 3.5-1 [69.4 kB] Get:38 http://ftpmaster.internal/ubuntu mantic/main armhf libmount1 armhf 2.38.1-5ubuntu2 [152 kB] Get:39 http://ftpmaster.internal/ubuntu mantic/main armhf libpam0g armhf 1.5.2-6ubuntu1 [60.5 kB] Get:40 http://ftpmaster.internal/ubuntu mantic/main armhf libseccomp2 armhf 2.5.4-1ubuntu3 [48.8 kB] Get:41 http://ftpmaster.internal/ubuntu mantic/main armhf systemd-sysv armhf 253.5-1ubuntu1 [11.5 kB] Get:42 http://ftpmaster.internal/ubuntu mantic/main armhf systemd armhf 253.5-1ubuntu1 [3059 kB] Get:43 http://ftpmaster.internal/ubuntu mantic/main armhf libsystemd-shared armhf 253.5-1ubuntu1 [1787 kB] Get:44 http://ftpmaster.internal/ubuntu mantic/main armhf systemd-dev all 253.5-1ubuntu1 [78.5 kB] Get:45 http://ftpmaster.internal/ubuntu mantic/main armhf libargon2-1 armhf 0~20190702+dfsg-3 [20.9 kB] Get:46 http://ftpmaster.internal/ubuntu mantic/main armhf libudev1 armhf 253.5-1ubuntu1 [151 kB] Get:47 http://ftpmaster.internal/ubuntu mantic/main armhf libdevmapper1.02.1 armhf 2:1.02.185-2ubuntu1 [135 kB] Get:48 http://ftpmaster.internal/ubuntu mantic/main armhf libuuid1 armhf 2.38.1-5ubuntu2 [31.9 kB] Get:49 http://ftpmaster.internal/ubuntu mantic/main armhf libcryptsetup12 armhf 2:2.6.1-4ubuntu1 [216 kB] Get:50 http://ftpmaster.internal/ubuntu mantic/main armhf libfdisk1 armhf 2.38.1-5ubuntu2 [186 kB] Get:51 http://ftpmaster.internal/ubuntu mantic/main armhf libp11-kit0 armhf 0.24.1-2ubuntu1 [212 kB] Get:52 http://ftpmaster.internal/ubuntu mantic/main armhf mount armhf 2.38.1-5ubuntu2 [125 kB] Get:53 http://ftpmaster.internal/ubuntu mantic/main armhf libsystemd0 armhf 253.5-1ubuntu1 [380 kB] Get:54 http://ftpmaster.internal/ubuntu mantic/main armhf libapt-pkg6.0 armhf 2.7.3 [961 kB] Get:55 http://ftpmaster.internal/ubuntu mantic/main armhf tar armhf 1.34+dfsg-1.2ubuntu1 [270 kB] Get:56 http://ftpmaster.internal/ubuntu mantic/main armhf dpkg armhf 1.21.22ubuntu1 [1348 kB] Get:57 http://ftpmaster.internal/ubuntu mantic/main armhf dash armhf 0.5.12-6ubuntu1 [80.9 kB] Get:58 http://ftpmaster.internal/ubuntu mantic/main armhf diffutils armhf 1:3.8-4 [167 kB] Get:59 http://ftpmaster.internal/ubuntu mantic/main armhf findutils armhf 4.9.0-5 [294 kB] Get:60 http://ftpmaster.internal/ubuntu mantic/main armhf grep armhf 3.11-2 [157 kB] Get:61 http://ftpmaster.internal/ubuntu mantic/main armhf hostname armhf 3.23+nmu1ubuntu1 [10.2 kB] Get:62 http://ftpmaster.internal/ubuntu mantic/main armhf libncurses6 armhf 6.4+20230625-2 [87.7 kB] Get:63 http://ftpmaster.internal/ubuntu mantic/main armhf libncursesw6 armhf 6.4+20230625-2 [119 kB] Get:64 http://ftpmaster.internal/ubuntu mantic/main armhf libtinfo6 armhf 6.4+20230625-2 [90.6 kB] Get:65 http://ftpmaster.internal/ubuntu mantic/main armhf ncurses-bin armhf 6.4+20230625-2 [175 kB] Get:66 http://ftpmaster.internal/ubuntu mantic/main armhf sed armhf 4.9-1 [191 kB] Get:67 http://ftpmaster.internal/ubuntu mantic/main armhf libsmartcols1 armhf 2.38.1-5ubuntu2 [103 kB] Get:68 http://ftpmaster.internal/ubuntu mantic/main armhf util-linux-extra armhf 2.38.1-5ubuntu2 [98.3 kB] Get:69 http://ftpmaster.internal/ubuntu mantic/main armhf util-linux armhf 2.38.1-5ubuntu2 [1160 kB] Get:70 http://ftpmaster.internal/ubuntu mantic/main armhf init-system-helpers all 1.65.2ubuntu1 [38.7 kB] Get:71 http://ftpmaster.internal/ubuntu mantic/main armhf ncurses-base all 6.4+20230625-2 [24.5 kB] Get:72 http://ftpmaster.internal/ubuntu mantic/main armhf sysvinit-utils armhf 3.07-1ubuntu1 [32.8 kB] Get:73 http://ftpmaster.internal/ubuntu mantic/main armhf lsb-base all 11.6 [4606 B] Get:74 http://ftpmaster.internal/ubuntu mantic/main armhf adduser all 3.137ubuntu1 [101 kB] Get:75 http://ftpmaster.internal/ubuntu mantic/main armhf gpgv armhf 2.2.40-1.1ubuntu1 [195 kB] Get:76 http://ftpmaster.internal/ubuntu mantic/main armhf libgmp10 armhf 2:6.3.0+dfsg-2ubuntu3 [209 kB] Get:77 http://ftpmaster.internal/ubuntu mantic/main armhf libnettle8 armhf 3.9.1-2 [187 kB] Get:78 http://ftpmaster.internal/ubuntu mantic/main armhf libhogweed6 armhf 3.9.1-2 [187 kB] Get:79 http://ftpmaster.internal/ubuntu mantic/main armhf libidn2-0 armhf 2.3.4-1 [114 kB] Get:80 http://ftpmaster.internal/ubuntu mantic/main armhf libtasn1-6 armhf 4.19.0-3 [36.8 kB] Get:81 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf libgnutls30 armhf 3.8.1-3ubuntu1 [943 kB] Get:82 http://ftpmaster.internal/ubuntu mantic/main armhf apt armhf 2.7.3 [1360 kB] Get:83 http://ftpmaster.internal/ubuntu mantic/main armhf libpam-modules-bin armhf 1.5.2-6ubuntu1 [42.5 kB] Get:84 http://ftpmaster.internal/ubuntu mantic/main armhf libpam-modules armhf 1.5.2-6ubuntu1 [265 kB] Get:85 http://ftpmaster.internal/ubuntu mantic/main armhf logsave armhf 1.47.0-2ubuntu1 [21.4 kB] Get:86 http://ftpmaster.internal/ubuntu mantic/main armhf libext2fs2 armhf 1.47.0-2ubuntu1 [200 kB] Get:87 http://ftpmaster.internal/ubuntu mantic/main armhf e2fsprogs armhf 1.47.0-2ubuntu1 [571 kB] Get:88 http://ftpmaster.internal/ubuntu mantic/main armhf init armhf 1.65.2ubuntu1 [5508 B] Get:89 http://ftpmaster.internal/ubuntu mantic/main armhf libattr1 armhf 1:2.5.1-4 [11.2 kB] Get:90 http://ftpmaster.internal/ubuntu mantic/main armhf libdebconfclient0 armhf 0.270ubuntu1 [10.6 kB] Get:91 http://ftpmaster.internal/ubuntu mantic/main armhf libmd0 armhf 1.1.0-1 [23.1 kB] Get:92 http://ftpmaster.internal/ubuntu mantic/main armhf libpam-runtime all 1.5.2-6ubuntu1 [41.5 kB] Get:93 http://ftpmaster.internal/ubuntu mantic/main armhf libsemanage-common all 3.5-1 [9890 B] Get:94 http://ftpmaster.internal/ubuntu mantic/main armhf libsepol2 armhf 3.5-1 [262 kB] Get:95 http://ftpmaster.internal/ubuntu mantic/main armhf libsemanage2 armhf 3.5-1 [83.9 kB] Get:96 http://ftpmaster.internal/ubuntu mantic/main armhf usrmerge all 35ubuntu1 [58.2 kB] Get:97 http://ftpmaster.internal/ubuntu mantic/main armhf libcom-err2 armhf 1.47.0-2ubuntu1 [21.3 kB] Get:98 http://ftpmaster.internal/ubuntu mantic/main armhf libproc2-0 armhf 2:4.0.3-1ubuntu1 [46.4 kB] Get:99 http://ftpmaster.internal/ubuntu mantic/main armhf libss2 armhf 1.47.0-2ubuntu1 [14.5 kB] Get:100 http://ftpmaster.internal/ubuntu mantic/main armhf mawk armhf 1.3.4.20230730-1 [114 kB] Get:101 http://ftpmaster.internal/ubuntu mantic/main armhf procps armhf 2:4.0.3-1ubuntu1 [599 kB] Get:102 http://ftpmaster.internal/ubuntu mantic/main armhf sensible-utils all 0.0.20 [19.6 kB] Get:103 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf openssl armhf 3.0.10-1ubuntu2 [1156 kB] Get:104 http://ftpmaster.internal/ubuntu mantic/main armhf ca-certificates all 20230311ubuntu1 [152 kB] Get:105 http://ftpmaster.internal/ubuntu mantic/main armhf libgssapi-krb5-2 armhf 1.20.1-2 [118 kB] Get:106 http://ftpmaster.internal/ubuntu mantic/main armhf libkrb5-3 armhf 1.20.1-2 [320 kB] Get:107 http://ftpmaster.internal/ubuntu mantic/main armhf libkrb5support0 armhf 1.20.1-2 [30.9 kB] Get:108 http://ftpmaster.internal/ubuntu mantic/main armhf libk5crypto3 armhf 1.20.1-2 [78.3 kB] Get:109 http://ftpmaster.internal/ubuntu mantic/main armhf readline-common all 8.2-1.3 [55.7 kB] Get:110 http://ftpmaster.internal/ubuntu mantic/main armhf libreadline8 armhf 8.2-1.3 [128 kB] Get:111 http://ftpmaster.internal/ubuntu mantic/main armhf libsqlite3-0 armhf 3.42.0-1 [578 kB] Get:112 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf tzdata all 2023c-9ubuntu1 [270 kB] Get:113 http://ftpmaster.internal/ubuntu mantic/main armhf libpng16-16 armhf 1.6.40-1 [166 kB] Get:114 http://ftpmaster.internal/ubuntu mantic/main armhf xz-utils armhf 5.4.1-0.2 [269 kB] Get:115 http://ftpmaster.internal/ubuntu mantic/main armhf advancecomp armhf 2.5-1 [192 kB] Get:116 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf libctf0 armhf 2.41-4ubuntu1 [86.9 kB] Get:117 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf libctf-nobfd0 armhf 2.41-4ubuntu1 [87.1 kB] Get:118 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf binutils-arm-linux-gnueabihf armhf 2.41-4ubuntu1 [2953 kB] Get:119 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf libbinutils armhf 2.41-4ubuntu1 [457 kB] Get:120 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf binutils armhf 2.41-4ubuntu1 [3070 B] Get:121 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf binutils-common armhf 2.41-4ubuntu1 [228 kB] Get:122 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf libsframe1 armhf 2.41-4ubuntu1 [12.9 kB] Get:123 http://ftpmaster.internal/ubuntu mantic/main armhf libisl23 armhf 0.26-3 [595 kB] Get:124 http://ftpmaster.internal/ubuntu mantic/main armhf libmpfr6 armhf 4.2.0-1 [228 kB] Get:125 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf cpp-13 armhf 13.2.0-2ubuntu1 [8238 kB] Get:126 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf g++ armhf 4:13.2.0-1ubuntu1 [1112 B] Get:127 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf gcc armhf 4:13.2.0-1ubuntu1 [5186 B] Get:128 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf cpp armhf 4:13.2.0-1ubuntu1 [28.9 kB] Get:129 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf libcc1-0 armhf 13.2.0-2ubuntu1 [43.7 kB] Get:130 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf libgomp1 armhf 13.2.0-2ubuntu1 [119 kB] Get:131 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf libatomic1 armhf 13.2.0-2ubuntu1 [7764 B] Get:132 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf libasan8 armhf 13.2.0-2ubuntu1 [2749 kB] Get:133 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf libubsan1 armhf 13.2.0-2ubuntu1 [1072 kB] Get:134 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf libgcc-13-dev armhf 13.2.0-2ubuntu1 [901 kB] Get:135 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf gcc-13 armhf 13.2.0-2ubuntu1 [16.5 MB] Get:136 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf libstdc++-13-dev armhf 13.2.0-2ubuntu1 [2444 kB] Get:137 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf g++-13 armhf 13.2.0-2ubuntu1 [9427 kB] Get:138 http://ftpmaster.internal/ubuntu mantic/main armhf dpkg-dev all 1.21.22ubuntu1 [1118 kB] Get:139 http://ftpmaster.internal/ubuntu mantic/main armhf libdpkg-perl all 1.21.22ubuntu1 [247 kB] Get:140 http://ftpmaster.internal/ubuntu mantic/main armhf lto-disabled-list all 42 [12.4 kB] Get:141 http://ftpmaster.internal/ubuntu mantic/main armhf build-essential armhf 12.10ubuntu1 [4928 B] Get:142 http://ftpmaster.internal/ubuntu mantic-proposed/universe armhf g++-12 armhf 12.3.0-7ubuntu2 [9321 kB] Get:143 http://ftpmaster.internal/ubuntu mantic-proposed/universe armhf libstdc++-12-dev armhf 12.3.0-7ubuntu2 [2251 kB] Get:144 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf gcc-12 armhf 12.3.0-7ubuntu2 [16.2 MB] Get:145 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf libgcc-12-dev armhf 12.3.0-7ubuntu2 [857 kB] Get:146 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf cpp-12 armhf 12.3.0-7ubuntu2 [8156 kB] Get:147 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf gcc-12-base armhf 12.3.0-7ubuntu2 [43.2 kB] Get:148 http://ftpmaster.internal/ubuntu mantic/main armhf libfakeroot armhf 1.32.1-1 [27.3 kB] Get:149 http://ftpmaster.internal/ubuntu mantic/main armhf fakeroot armhf 1.32.1-1 [61.6 kB] Get:150 http://ftpmaster.internal/ubuntu mantic/main armhf gpg armhf 2.2.40-1.1ubuntu1 [482 kB] Get:151 http://ftpmaster.internal/ubuntu mantic/main armhf gpgconf armhf 2.2.40-1.1ubuntu1 [120 kB] Get:152 http://ftpmaster.internal/ubuntu mantic/main armhf gpg-agent armhf 2.2.40-1.1ubuntu1 [236 kB] Get:153 http://ftpmaster.internal/ubuntu mantic/main armhf pkgbinarymangler all 153 [16.3 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 129 MB in 58s (2226 kB/s) (Reading database ... 12825 files and directories currently installed.) 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Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up fakeroot (1.32.1-1) ... Setting up perl-modules-5.36 (5.36.0-7ubuntu1) ... Setting up libmpfr6:armhf (4.2.0-1) ... Setting up libncurses6:armhf (6.4+20230625-2) ... Setting up xz-utils (5.4.1-0.2) ... Setting up libproc2-0:armhf (2:4.0.3-1ubuntu1) ... Setting up libpng16-16:armhf (1.6.40-1) ... Setting up libatomic1:armhf (13.2.0-2ubuntu1) ... Setting up libss2:armhf (1.47.0-2ubuntu1) ... Setting up libncursesw6:armhf (6.4+20230625-2) ... Setting up libk5crypto3:armhf (1.20.1-2) ... Setting up logsave (1.47.0-2ubuntu1) ... Setting up libubsan1:armhf (13.2.0-2ubuntu1) ... Setting up advancecomp (2.5-1) ... Setting up sensible-utils (0.0.20) ... Setting up libcrypt-dev:armhf (1:4.4.36-2) ... Setting up libasan8:armhf (13.2.0-2ubuntu1) ... Setting up procps (2:4.0.3-1ubuntu1) ... Setting up mawk (1.3.4.20230730-1) ... Setting up libkrb5-3:armhf (1.20.1-2) ... Setting up libbinutils:armhf (2.41-4ubuntu1) ... Setting up libisl23:armhf (0.26-3) ... Setting up libc-dev-bin (2.38-1ubuntu3) ... Setting up openssl (3.0.10-1ubuntu2) ... Installing new version of config file /etc/ssl/openssl.cnf ... Setting up readline-common (8.2-1.3) ... Setting up libcc1-0:armhf (13.2.0-2ubuntu1) ... Setting up libperl5.36:armhf (5.36.0-7ubuntu1) ... Setting up libctf0:armhf (2.41-4ubuntu1) ... Setting up cpp-12 (12.3.0-7ubuntu2) ... Setting up pkgbinarymangler (153) ... Setting up cpp-13 (13.2.0-2ubuntu1) ... Setting up libreadline8:armhf (8.2-1.3) ... Setting up e2fsprogs (1.47.0-2ubuntu1) ... Setting up ca-certificates (20230311ubuntu1) ... Updating certificates in /etc/ssl/certs... rehash: warning: skipping ca-certificates.crt,it does not contain exactly one certificate or CRL 19 added, 6 removed; done. Setting up perl (5.36.0-7ubuntu1) ... Setting up libgcc-12-dev:armhf (12.3.0-7ubuntu2) ... Setting up libgssapi-krb5-2:armhf (1.20.1-2) ... Setting up libdpkg-perl (1.21.22ubuntu1) ... Setting up libgcc-13-dev:armhf (13.2.0-2ubuntu1) ... Setting up cpp (4:13.2.0-1ubuntu1) ... Setting up gpgconf (2.2.40-1.1ubuntu1) ... Setting up libc6-dev:armhf (2.38-1ubuntu3) ... Setting up binutils-arm-linux-gnueabihf (2.41-4ubuntu1) ... Setting up gpg (2.2.40-1.1ubuntu1) ... Setting up libstdc++-13-dev:armhf (13.2.0-2ubuntu1) ... Setting up gpg-agent (2.2.40-1.1ubuntu1) ... Setting up libstdc++-12-dev:armhf (12.3.0-7ubuntu2) ... Setting up binutils (2.41-4ubuntu1) ... Setting up dpkg-dev (1.21.22ubuntu1) ... Setting up gcc-12 (12.3.0-7ubuntu2) ... Setting up gcc-13 (13.2.0-2ubuntu1) ... Setting up g++-12 (12.3.0-7ubuntu2) ... Setting up g++-13 (13.2.0-2ubuntu1) ... Setting up gcc (4:13.2.0-1ubuntu1) ... Setting up g++ (4:13.2.0-1ubuntu1) ... Setting up build-essential (12.10ubuntu1) ... Processing triggers for libc-bin (2.38-1ubuntu3) ... Processing triggers for debianutils (5.8-1) ... Processing triggers for ca-certificates (20230311ubuntu1) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-26502253 armhf mantic-proposed -c chroot:build-PACKAGEBUILD-26502253 --arch=armhf --dist=mantic-proposed --nolog libbpp-seq_2.4.1-10.dsc Initiating build PACKAGEBUILD-26502253 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-155-generic #172-Ubuntu SMP Fri Jul 7 16:13:58 UTC 2023 armv7l sbuild (Debian sbuild) 0.79.0 (05 February 2020) on bos02-arm64-056.buildd +==============================================================================+ | libbpp-seq 2.4.1-10 (armhf) Sun, 13 Aug 2023 17:12:59 +0000 | +==============================================================================+ Package: libbpp-seq Version: 2.4.1-10 Source Version: 2.4.1-10 Distribution: mantic-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-26502253/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/libbpp-seq-ghjSdw/resolver-i1SsgR' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- libbpp-seq_2.4.1-10.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/libbpp-seq-ghjSdw/libbpp-seq-2.4.1' with '<>' I: NOTICE: Log filtering will replace 'build/libbpp-seq-ghjSdw' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), cmake, d-shlibs, libbpp-core-dev, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), cmake, d-shlibs, libbpp-core-dev, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [391 B] Get:5 copy:/<>/apt_archive ./ Packages [474 B] Fetched 1822 B in 0s (57.2 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-12 libstdc++-12-dev Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils cmake cmake-data d-shlibs debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libbpp-core-dev libbpp-core4 libbrotli1 libcurl4 libdebhelper-perl libdw1 libelf1 libexpat1 libfile-stripnondeterminism-perl libicu72 libjsoncpp25 libldap2 libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libssh-4 libsub-override-perl libtool libuchardet0 libuv1 libxml2 m4 man-db po-debconf Suggested packages: autoconf-archive gnu-standards autoconf-doc cmake-doc cmake-format elpa-cmake-mode ninja-build dh-make gettext-doc libasprintf-dev libgettextpo-dev groff lrzip libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libldap-common publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils cmake cmake-data d-shlibs debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libbpp-core-dev libbpp-core4 libbrotli1 libcurl4 libdebhelper-perl libdw1 libelf1 libexpat1 libfile-stripnondeterminism-perl libicu72 libjsoncpp25 libldap2 libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libssh-4 libsub-override-perl libtool libuchardet0 libuv1 libxml2 m4 man-db po-debconf sbuild-build-depends-main-dummy 0 upgraded, 51 newly installed, 0 to remove and 0 not upgraded. Need to get 29.8 MB of archives. After this operation, 109 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [690 B] Get:2 http://ftpmaster.internal/ubuntu mantic/main armhf libelf1 armhf 0.189-4 [48.7 kB] Get:3 http://ftpmaster.internal/ubuntu mantic/main armhf libexpat1 armhf 2.5.0-2 [63.7 kB] Get:4 http://ftpmaster.internal/ubuntu mantic/main armhf libicu72 armhf 72.1-3ubuntu2 [10.5 MB] Get:5 http://ftpmaster.internal/ubuntu mantic/main armhf libxml2 armhf 2.9.14+dfsg-1.3 [591 kB] Get:6 http://ftpmaster.internal/ubuntu mantic/main armhf bsdextrautils armhf 2.38.1-5ubuntu2 [75.9 kB] Get:7 http://ftpmaster.internal/ubuntu mantic/main armhf libmagic-mgc armhf 1:5.44-3 [293 kB] Get:8 http://ftpmaster.internal/ubuntu mantic/main armhf libmagic1 armhf 1:5.44-3 [80.3 kB] Get:9 http://ftpmaster.internal/ubuntu mantic/main armhf file armhf 1:5.44-3 [20.9 kB] Get:10 http://ftpmaster.internal/ubuntu mantic/main armhf gettext-base armhf 0.21-13 [37.5 kB] Get:11 http://ftpmaster.internal/ubuntu mantic/main armhf libuchardet0 armhf 0.0.7-1build2 [75.7 kB] Get:12 http://ftpmaster.internal/ubuntu mantic/main armhf groff-base armhf 1.23.0-2 [948 kB] Get:13 http://ftpmaster.internal/ubuntu mantic/main armhf libnghttp2-14 armhf 1.55.1-1 [67.6 kB] Get:14 http://ftpmaster.internal/ubuntu mantic/main armhf libpipeline1 armhf 1.5.7-1 [26.2 kB] Get:15 http://ftpmaster.internal/ubuntu mantic/main armhf libpsl5 armhf 0.21.2-1 [57.6 kB] Get:16 http://ftpmaster.internal/ubuntu mantic/main armhf libuv1 armhf 1.44.2-1 [76.2 kB] Get:17 http://ftpmaster.internal/ubuntu mantic/main armhf man-db armhf 2.11.2-3 [1187 kB] Get:18 http://ftpmaster.internal/ubuntu mantic/main armhf m4 armhf 1.4.19-3 [235 kB] Get:19 http://ftpmaster.internal/ubuntu mantic/main armhf autoconf all 2.71-3 [339 kB] Get:20 http://ftpmaster.internal/ubuntu mantic/main armhf autotools-dev all 20220109.1 [44.9 kB] Get:21 http://ftpmaster.internal/ubuntu mantic/main armhf automake all 1:1.16.5-1.3 [558 kB] Get:22 http://ftpmaster.internal/ubuntu mantic/main armhf autopoint all 0.21-13 [422 kB] Get:23 http://ftpmaster.internal/ubuntu mantic/main armhf libarchive13 armhf 3.6.2-1ubuntu1 [326 kB] Get:24 http://ftpmaster.internal/ubuntu mantic/main armhf libbrotli1 armhf 1.0.9-2build8 [296 kB] Get:25 http://ftpmaster.internal/ubuntu mantic/main armhf libsasl2-modules-db armhf 2.1.28+dfsg1-3 [18.9 kB] Get:26 http://ftpmaster.internal/ubuntu mantic/main armhf libsasl2-2 armhf 2.1.28+dfsg1-3 [49.6 kB] Get:27 http://ftpmaster.internal/ubuntu mantic/main armhf libldap2 armhf 2.6.6+dfsg-1~exp1ubuntu1 [170 kB] Get:28 http://ftpmaster.internal/ubuntu mantic/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2build4 [52.8 kB] Get:29 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf libssh-4 armhf 0.10.5-2 [166 kB] Get:30 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf libcurl4 armhf 8.2.1-1ubuntu2 [279 kB] Get:31 http://ftpmaster.internal/ubuntu mantic/main armhf libjsoncpp25 armhf 1.9.5-6 [72.5 kB] Get:32 http://ftpmaster.internal/ubuntu mantic/main armhf librhash0 armhf 1.4.3-3 [142 kB] Get:33 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf cmake-data all 3.27.2-1 [2127 kB] Get:34 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf cmake armhf 3.27.2-1 [5974 kB] Get:35 http://ftpmaster.internal/ubuntu mantic/universe armhf d-shlibs all 0.104 [10.2 kB] Get:36 http://ftpmaster.internal/ubuntu mantic/main armhf libdebhelper-perl all 13.11.4ubuntu3 [66.1 kB] Get:37 http://ftpmaster.internal/ubuntu mantic/main armhf libtool all 2.4.7-7 [166 kB] Get:38 http://ftpmaster.internal/ubuntu mantic/main armhf dh-autoreconf all 20 [16.1 kB] Get:39 http://ftpmaster.internal/ubuntu mantic/main armhf libarchive-zip-perl all 1.68-1 [90.2 kB] Get:40 http://ftpmaster.internal/ubuntu mantic/main armhf libsub-override-perl all 0.09-4 [8706 B] Get:41 http://ftpmaster.internal/ubuntu mantic/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [18.1 kB] Get:42 http://ftpmaster.internal/ubuntu mantic/main armhf dh-strip-nondeterminism all 1.13.1-1 [5362 B] Get:43 http://ftpmaster.internal/ubuntu mantic/main armhf libdw1 armhf 0.189-4 [233 kB] Get:44 http://ftpmaster.internal/ubuntu mantic/main armhf debugedit armhf 1:5.0-5 [42.8 kB] Get:45 http://ftpmaster.internal/ubuntu mantic/main armhf dwz armhf 0.15-1 [109 kB] Get:46 http://ftpmaster.internal/ubuntu mantic/main armhf gettext armhf 0.21-13 [801 kB] Get:47 http://ftpmaster.internal/ubuntu mantic/main armhf intltool-debian all 0.35.0+20060710.6 [23.2 kB] Get:48 http://ftpmaster.internal/ubuntu mantic/main armhf po-debconf all 1.0.21+nmu1 [233 kB] Get:49 http://ftpmaster.internal/ubuntu mantic/main armhf debhelper all 13.11.4ubuntu3 [925 kB] Get:50 http://ftpmaster.internal/ubuntu mantic-proposed/universe armhf libbpp-core4 armhf 2.4.1-10 [593 kB] Get:51 http://ftpmaster.internal/ubuntu mantic-proposed/universe armhf libbpp-core-dev armhf 2.4.1-10 [1083 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 29.8 MB in 39s (755 kB/s) Selecting previously unselected package libelf1:armhf. (Reading database ... 13248 files and directories currently installed.) Preparing to unpack .../00-libelf1_0.189-4_armhf.deb ... Unpacking libelf1:armhf (0.189-4) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../01-libexpat1_2.5.0-2_armhf.deb ... Unpacking libexpat1:armhf (2.5.0-2) ... Selecting previously unselected package libicu72:armhf. Preparing to unpack .../02-libicu72_72.1-3ubuntu2_armhf.deb ... Unpacking libicu72:armhf (72.1-3ubuntu2) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../03-libxml2_2.9.14+dfsg-1.3_armhf.deb ... Unpacking libxml2:armhf (2.9.14+dfsg-1.3) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../04-bsdextrautils_2.38.1-5ubuntu2_armhf.deb ... Unpacking bsdextrautils (2.38.1-5ubuntu2) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../05-libmagic-mgc_1%3a5.44-3_armhf.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:armhf. Preparing to unpack .../06-libmagic1_1%3a5.44-3_armhf.deb ... Unpacking libmagic1:armhf (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../07-file_1%3a5.44-3_armhf.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../08-gettext-base_0.21-13_armhf.deb ... Unpacking gettext-base (0.21-13) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../09-libuchardet0_0.0.7-1build2_armhf.deb ... Unpacking libuchardet0:armhf (0.0.7-1build2) ... Selecting previously unselected package groff-base. Preparing to unpack .../10-groff-base_1.23.0-2_armhf.deb ... Unpacking groff-base (1.23.0-2) ... Selecting previously unselected package libnghttp2-14:armhf. Preparing to unpack .../11-libnghttp2-14_1.55.1-1_armhf.deb ... Unpacking libnghttp2-14:armhf (1.55.1-1) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../12-libpipeline1_1.5.7-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.7-1) ... Selecting previously unselected package libpsl5:armhf. Preparing to unpack .../13-libpsl5_0.21.2-1_armhf.deb ... Unpacking libpsl5:armhf (0.21.2-1) ... Selecting previously unselected package libuv1:armhf. Preparing to unpack .../14-libuv1_1.44.2-1_armhf.deb ... Unpacking libuv1:armhf (1.44.2-1) ... Selecting previously unselected package man-db. Preparing to unpack .../15-man-db_2.11.2-3_armhf.deb ... Unpacking man-db (2.11.2-3) ... Selecting previously unselected package m4. Preparing to unpack .../16-m4_1.4.19-3_armhf.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../17-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../18-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../19-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../20-autopoint_0.21-13_all.deb ... Unpacking autopoint (0.21-13) ... Selecting previously unselected package libarchive13:armhf. Preparing to unpack .../21-libarchive13_3.6.2-1ubuntu1_armhf.deb ... Unpacking libarchive13:armhf (3.6.2-1ubuntu1) ... Selecting previously unselected package libbrotli1:armhf. Preparing to unpack .../22-libbrotli1_1.0.9-2build8_armhf.deb ... Unpacking libbrotli1:armhf (1.0.9-2build8) ... Selecting previously unselected package libsasl2-modules-db:armhf. Preparing to unpack .../23-libsasl2-modules-db_2.1.28+dfsg1-3_armhf.deb ... Unpacking libsasl2-modules-db:armhf (2.1.28+dfsg1-3) ... Selecting previously unselected package libsasl2-2:armhf. Preparing to unpack .../24-libsasl2-2_2.1.28+dfsg1-3_armhf.deb ... Unpacking libsasl2-2:armhf (2.1.28+dfsg1-3) ... Selecting previously unselected package libldap2:armhf. Preparing to unpack .../25-libldap2_2.6.6+dfsg-1~exp1ubuntu1_armhf.deb ... Unpacking libldap2:armhf (2.6.6+dfsg-1~exp1ubuntu1) ... Selecting previously unselected package librtmp1:armhf. Preparing to unpack .../26-librtmp1_2.4+20151223.gitfa8646d.1-2build4_armhf.deb ... Unpacking librtmp1:armhf (2.4+20151223.gitfa8646d.1-2build4) ... Selecting previously unselected package libssh-4:armhf. Preparing to unpack .../27-libssh-4_0.10.5-2_armhf.deb ... Unpacking libssh-4:armhf (0.10.5-2) ... Selecting previously unselected package libcurl4:armhf. Preparing to unpack .../28-libcurl4_8.2.1-1ubuntu2_armhf.deb ... Unpacking libcurl4:armhf (8.2.1-1ubuntu2) ... Selecting previously unselected package libjsoncpp25:armhf. Preparing to unpack .../29-libjsoncpp25_1.9.5-6_armhf.deb ... Unpacking libjsoncpp25:armhf (1.9.5-6) ... 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Unpacking libbpp-core4:armhf (2.4.1-10) ... Selecting previously unselected package libbpp-core-dev:armhf. Preparing to unpack .../49-libbpp-core-dev_2.4.1-10_armhf.deb ... Unpacking libbpp-core-dev:armhf (2.4.1-10) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../50-sbuild-build-depends-main-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libexpat1:armhf (2.5.0-2) ... Setting up libpipeline1:armhf (1.5.7-1) ... Setting up libpsl5:armhf (0.21.2-1) ... Setting up libicu72:armhf (72.1-3ubuntu2) ... Setting up bsdextrautils (2.38.1-5ubuntu2) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.11.4ubuntu3) ... Setting up libbrotli1:armhf (1.0.9-2build8) ... Setting up libnghttp2-14:armhf (1.55.1-1) ... Setting up libmagic1:armhf (1:5.44-3) ... Setting up gettext-base (0.21-13) ... Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up libsasl2-modules-db:armhf (2.1.28+dfsg1-3) ... Setting up autotools-dev (20220109.1) ... Setting up libuv1:armhf (1.44.2-1) ... Setting up libbpp-core4:armhf (2.4.1-10) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2build4) ... Setting up autopoint (0.21-13) ... Setting up libjsoncpp25:armhf (1.9.5-6) ... Setting up d-shlibs (0.104) ... Setting up libsasl2-2:armhf (2.1.28+dfsg1-3) ... Setting up libssh-4:armhf (0.10.5-2) ... Setting up autoconf (2.71-3) ... Setting up librhash0:armhf (1.4.3-3) ... Setting up libuchardet0:armhf (0.0.7-1build2) ... Setting up libsub-override-perl (0.09-4) ... Setting up cmake-data (3.27.2-1) ... Setting up libelf1:armhf (0.189-4) ... Setting up libxml2:armhf (2.9.14+dfsg-1.3) ... Setting up libldap2:armhf (2.6.6+dfsg-1~exp1ubuntu1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libdw1:armhf (0.189-4) ... Setting up gettext (0.21-13) ... Setting up libtool (2.4.7-7) ... Setting up libarchive13:armhf (3.6.2-1ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libbpp-core-dev:armhf (2.4.1-10) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-2) ... Setting up debugedit (1:5.0-5) ... Setting up libcurl4:armhf (8.2.1-1ubuntu2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.11.2-3) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up cmake (3.27.2-1) ... Setting up debhelper (13.11.4ubuntu3) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.38-1ubuntu3) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-155-generic #172-Ubuntu SMP Fri Jul 7 16:13:58 UTC 2023 arm64 (armv7l) Toolchain package versions: binutils_2.41-4ubuntu1 dpkg-dev_1.21.22ubuntu1 g++-12_12.3.0-7ubuntu2 g++-13_13.2.0-2ubuntu1 gcc-12_12.3.0-7ubuntu2 gcc-13_13.2.0-2ubuntu1 libc6-dev_2.38-1ubuntu3 libstdc++-12-dev_12.3.0-7ubuntu2 libstdc++-13-dev_13.2.0-2ubuntu1 libstdc++6_13.2.0-2ubuntu1 linux-libc-dev_6.3.0-7.7 Package versions: adduser_3.137ubuntu1 advancecomp_2.5-1 apt_2.7.3 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-13 autotools-dev_20220109.1 base-files_13ubuntu1 base-passwd_3.6.1 bash_5.2.15-2ubuntu1 binutils_2.41-4ubuntu1 binutils-arm-linux-gnueabihf_2.41-4ubuntu1 binutils-common_2.41-4ubuntu1 bsdextrautils_2.38.1-5ubuntu2 bsdutils_1:2.38.1-5ubuntu2 build-essential_12.10ubuntu1 bzip2_1.0.8-5build1 ca-certificates_20230311ubuntu1 cmake_3.27.2-1 cmake-data_3.27.2-1 coreutils_9.1-1ubuntu2 cpp_4:13.2.0-1ubuntu1 cpp-12_12.3.0-7ubuntu2 cpp-13_13.2.0-2ubuntu1 d-shlibs_0.104 dash_0.5.12-6ubuntu1 debconf_1.5.82 debhelper_13.11.4ubuntu3 debianutils_5.8-1 debugedit_1:5.0-5 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.8-4 dpkg_1.21.22ubuntu1 dpkg-dev_1.21.22ubuntu1 dwz_0.15-1 e2fsprogs_1.47.0-2ubuntu1 fakeroot_1.32.1-1 file_1:5.44-3 findutils_4.9.0-5 g++_4:13.2.0-1ubuntu1 g++-12_12.3.0-7ubuntu2 g++-13_13.2.0-2ubuntu1 gcc_4:13.2.0-1ubuntu1 gcc-12_12.3.0-7ubuntu2 gcc-12-base_12.3.0-7ubuntu2 gcc-13_13.2.0-2ubuntu1 gcc-13-base_13.2.0-2ubuntu1 gettext_0.21-13 gettext-base_0.21-13 gpg_2.2.40-1.1ubuntu1 gpg-agent_2.2.40-1.1ubuntu1 gpgconf_2.2.40-1.1ubuntu1 gpgv_2.2.40-1.1ubuntu1 grep_3.11-2 groff-base_1.23.0-2 gzip_1.12-1ubuntu1 hostname_3.23+nmu1ubuntu1 init_1.65.2ubuntu1 init-system-helpers_1.65.2ubuntu1 intltool-debian_0.35.0+20060710.6 libacl1_2.3.1-3 libapparmor1_3.0.8-1ubuntu4 libapt-pkg6.0_2.7.3 libarchive-zip-perl_1.68-1 libarchive13_3.6.2-1ubuntu1 libargon2-1_0~20190702+dfsg-3 libasan8_13.2.0-2ubuntu1 libassuan0_2.5.5-5 libatomic1_13.2.0-2ubuntu1 libattr1_1:2.5.1-4 libaudit-common_1:3.1.1-1 libaudit1_1:3.1.1-1 libbinutils_2.41-4ubuntu1 libblkid1_2.38.1-5ubuntu2 libbpp-core-dev_2.4.1-10 libbpp-core4_2.4.1-10 libbrotli1_1.0.9-2build8 libbz2-1.0_1.0.8-5build1 libc-bin_2.38-1ubuntu3 libc-dev-bin_2.38-1ubuntu3 libc6_2.38-1ubuntu3 libc6-dev_2.38-1ubuntu3 libcap-ng0_0.8.3-1build2 libcap2_1:2.66-4ubuntu1 libcc1-0_13.2.0-2ubuntu1 libcom-err2_1.47.0-2ubuntu1 libcrypt-dev_1:4.4.36-2 libcrypt1_1:4.4.36-2 libcryptsetup12_2:2.6.1-4ubuntu1 libctf-nobfd0_2.41-4ubuntu1 libctf0_2.41-4ubuntu1 libcurl4_8.2.1-1ubuntu2 libdb5.3_5.3.28+dfsg2-2 libdebconfclient0_0.270ubuntu1 libdebhelper-perl_13.11.4ubuntu3 libdevmapper1.02.1_2:1.02.185-2ubuntu1 libdpkg-perl_1.21.22ubuntu1 libdw1_0.189-4 libelf1_0.189-4 libexpat1_2.5.0-2 libext2fs2_1.47.0-2ubuntu1 libfakeroot_1.32.1-1 libfdisk1_2.38.1-5ubuntu2 libffi8_3.4.4-1 libfile-stripnondeterminism-perl_1.13.1-1 libgcc-12-dev_12.3.0-7ubuntu2 libgcc-13-dev_13.2.0-2ubuntu1 libgcc-s1_13.2.0-2ubuntu1 libgcrypt20_1.10.2-2ubuntu1 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgmp10_2:6.3.0+dfsg-2ubuntu3 libgnutls30_3.8.1-3ubuntu1 libgomp1_13.2.0-2ubuntu1 libgpg-error0_1.46-1 libgssapi-krb5-2_1.20.1-2 libhogweed6_3.9.1-2 libicu72_72.1-3ubuntu2 libidn2-0_2.3.4-1 libip4tc2_1.8.9-2ubuntu2 libisl23_0.26-3 libjansson4_2.14-2 libjson-c5_0.16-2 libjsoncpp25_1.9.5-6 libk5crypto3_1.20.1-2 libkeyutils1_1.6.3-2 libkmod2_30+20230519-1ubuntu2 libkrb5-3_1.20.1-2 libkrb5support0_1.20.1-2 libldap2_2.6.6+dfsg-1~exp1ubuntu1 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2.4.1-10 Maintainer: Debian Med Packaging Team Uploaders: Julien Dutheil , Andreas Tille Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/libbpp-seq Vcs-Git: https://salsa.debian.org/med-team/libbpp-seq.git Build-Depends: debhelper-compat (= 13), cmake, d-shlibs, libbpp-core-dev Package-List: libbpp-seq-dev deb libdevel optional arch=any libbpp-seq12 deb libs optional arch=any Checksums-Sha1: a79687bdf2ce4c5c2031cb5da8394a9420804f90 322620 libbpp-seq_2.4.1.orig.tar.gz e7f4afad355dc327ef3a55ef9cc77dcb077b8de1 28208 libbpp-seq_2.4.1-10.debian.tar.xz Checksums-Sha256: dbfcb04803e4b7f08f9f159da8a947c91906c3ca8b20683ac193f6dc524d4655 322620 libbpp-seq_2.4.1.orig.tar.gz a38c526879ef263d2c256193735dfaedefecebdfa3ecde418274c1fd491a19ab 28208 libbpp-seq_2.4.1-10.debian.tar.xz Files: bdafc80aab9591ff79556138d6555941 322620 libbpp-seq_2.4.1.orig.tar.gz 3e53b8d2d122c4c7c8dc3a125ff5b923 28208 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signature: No public key dpkg-source: warning: cannot verify inline signature for ./libbpp-seq_2.4.1-10.dsc: no acceptable signature found dpkg-source: info: extracting libbpp-seq in /<> dpkg-source: info: unpacking libbpp-seq_2.4.1.orig.tar.gz dpkg-source: info: unpacking libbpp-seq_2.4.1-10.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying unforce-cxxflags.patch dpkg-source: info: applying spelling Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-26502253 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-26502253 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-26502253 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package libbpp-seq dpkg-buildpackage: info: source version 2.4.1-10 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a cd obj-arm-linux-gnueabihf && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf .. CMake Deprecation Warning at CMakeLists.txt:8 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The CXX compiler identification is GNU 13.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- bpp-core 4.1.0 found: -- static lib: /usr/lib/arm-linux-gnueabihf/libbpp-core.a -- shared lib: /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 -- includes: /usr/include -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Configuring done (1.0s) -- Generating done (0.2s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /<>/obj-arm-linux-gnueabihf dh_auto_build -a cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/<>/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/<> -B/<>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-arm-linux-gnueabihf/CMakeFiles /<>/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/obj-arm-linux-gnueabihf' make -f src/CMakeFiles/bpp-seq-static.dir/build.make src/CMakeFiles/bpp-seq-static.dir/depend make -f src/CMakeFiles/bpp-seq-shared.dir/build.make src/CMakeFiles/bpp-seq-shared.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/src /<>/obj-arm-linux-gnueabihf/src/CMakeFiles/bpp-seq-static.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/src /<>/obj-arm-linux-gnueabihf/src/CMakeFiles/bpp-seq-shared.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f src/CMakeFiles/bpp-seq-static.dir/build.make src/CMakeFiles/bpp-seq-static.dir/build make -f src/CMakeFiles/bpp-seq-shared.dir/build.make src/CMakeFiles/bpp-seq-shared.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 1%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AlphabetExceptions.cpp.o [ 1%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AbstractAlphabet.cpp.o [ 1%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AlphabetTools.cpp.o [ 1%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AbstractAlphabet.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AbstractAlphabet.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AbstractAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AbstractAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/AbstractAlphabet.cpp cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AlphabetTools.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AlphabetTools.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AlphabetTools.cpp.o -c /<>/src/Bpp/Seq/Alphabet/AlphabetTools.cpp cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AlphabetExceptions.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AlphabetExceptions.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AlphabetExceptions.cpp.o -c /<>/src/Bpp/Seq/Alphabet/AlphabetExceptions.cpp cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AbstractAlphabet.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AbstractAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AbstractAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/AbstractAlphabet.cpp In file included from /<>/src/Bpp/Seq/Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/Alphabet/AlphabetTools.cpp:40: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 2%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/BinaryAlphabet.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/BinaryAlphabet.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/BinaryAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/BinaryAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/BinaryAlphabet.cpp [ 2%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp [ 3%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/CodonAlphabet.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/CodonAlphabet.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/CodonAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/CodonAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/CodonAlphabet.cpp [ 4%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AlphabetExceptions.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AlphabetExceptions.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AlphabetExceptions.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AlphabetExceptions.cpp.o -c /<>/src/Bpp/Seq/Alphabet/AlphabetExceptions.cpp [ 5%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/DNA.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/DNA.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/DNA.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/DNA.cpp.o -c /<>/src/Bpp/Seq/Alphabet/DNA.cpp In file included from /<>/src/Bpp/Seq/Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/Alphabet/CodonAlphabet.cpp:40: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 5%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AlphabetTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AlphabetTools.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AlphabetTools.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AlphabetTools.cpp.o -c /<>/src/Bpp/Seq/Alphabet/AlphabetTools.cpp In file included from /<>/src/Bpp/Seq/Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/Alphabet/AlphabetTools.cpp:40: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 5%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/DefaultAlphabet.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/DefaultAlphabet.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/DefaultAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/DefaultAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/DefaultAlphabet.cpp [ 6%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/IntegerAlphabet.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/IntegerAlphabet.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/IntegerAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/IntegerAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/IntegerAlphabet.cpp [ 6%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/LetterAlphabet.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/LetterAlphabet.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/LetterAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/LetterAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/LetterAlphabet.cpp [ 7%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/BinaryAlphabet.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/BinaryAlphabet.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/BinaryAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/BinaryAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/BinaryAlphabet.cpp [ 8%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/LexicalAlphabet.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/LexicalAlphabet.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/LexicalAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/LexicalAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/LexicalAlphabet.cpp [ 8%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/NumericAlphabet.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/NumericAlphabet.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/NumericAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/NumericAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/NumericAlphabet.cpp [ 9%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/ProteicAlphabet.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/ProteicAlphabet.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/ProteicAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/ProteicAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/ProteicAlphabet.cpp [ 9%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/RNA.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/RNA.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/RNA.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/RNA.cpp.o -c /<>/src/Bpp/Seq/Alphabet/RNA.cpp [ 9%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp In file included from /usr/include/c++/13/map:62, from /<>/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /<>/src/Bpp/Seq/Alphabet/NumericAlphabet.h:44, from /<>/src/Bpp/Seq/Alphabet/NumericAlphabet.cpp:40: /usr/include/c++/13/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = double; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/map:63: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = double; _Tp = unsigned int; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘void bpp::NumericAlphabet::remap()’ at /<>/src/Bpp/Seq/Alphabet/NumericAlphabet.cpp:159:16: /usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = double; _Tp = unsigned int; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::NumericAlphabet::setState(size_t, bpp::AlphabetState*)’ at /<>/src/Bpp/Seq/Alphabet/NumericAlphabet.cpp:87:14: /usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = double; _Tp = unsigned int; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::NumericAlphabet::registerState(bpp::AlphabetState*)’ at /<>/src/Bpp/Seq/Alphabet/NumericAlphabet.cpp:99:16: /usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 10%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/RNY.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/RNY.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/RNY.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/RNY.cpp.o -c /<>/src/Bpp/Seq/Alphabet/RNY.cpp [ 11%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/CodonAlphabet.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/CodonAlphabet.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/CodonAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/CodonAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/CodonAlphabet.cpp In file included from /<>/src/Bpp/Seq/Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/Alphabet/RNY.cpp:44: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/Alphabet/CodonAlphabet.cpp:40: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 11%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/WordAlphabet.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/WordAlphabet.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/WordAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/WordAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/WordAlphabet.cpp In file included from /<>/src/Bpp/Seq/Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/Alphabet/WordAlphabet.cpp:41: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 12%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp.o -c /<>/src/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp In file included from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp:41: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 12%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/DNA.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/DNA.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/DNA.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/DNA.cpp.o -c /<>/src/Bpp/Seq/Alphabet/DNA.cpp [ 12%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp.o -c /<>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp [ 13%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp.o -c /<>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp [ 14%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp.o -c /<>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp In file included from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp:41: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp:43: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 14%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp.o -c /<>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp [ 15%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp.o -c /<>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp [ 16%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/DefaultAlphabet.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/DefaultAlphabet.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/DefaultAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/DefaultAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/DefaultAlphabet.cpp In file included from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp:44: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp:46: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 16%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/IntegerAlphabet.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/IntegerAlphabet.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/IntegerAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/IntegerAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/IntegerAlphabet.cpp [ 16%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/SimpleScore.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/SimpleScore.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/SimpleScore.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/AlphabetIndex/SimpleScore.cpp.o -c /<>/src/Bpp/Seq/AlphabetIndex/SimpleScore.cpp [ 17%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/LetterAlphabet.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/LetterAlphabet.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/LetterAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/LetterAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/LetterAlphabet.cpp [ 18%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/App/SequenceApplicationTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/App/SequenceApplicationTools.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/App/SequenceApplicationTools.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/App/SequenceApplicationTools.cpp.o -c /<>/src/Bpp/Seq/App/SequenceApplicationTools.cpp [ 18%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/LexicalAlphabet.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/LexicalAlphabet.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/LexicalAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/LexicalAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/LexicalAlphabet.cpp In file included from /<>/src/Bpp/Seq/App/../GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/App/../GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/App/../GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/App/SequenceApplicationTools.h:45, from /<>/src/Bpp/Seq/App/SequenceApplicationTools.cpp:41: /<>/src/Bpp/Seq/App/../GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/App/../GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/App/../GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/App/../GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/App/../GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 18%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/CodonSiteTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/CodonSiteTools.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/CodonSiteTools.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/CodonSiteTools.cpp.o -c /<>/src/Bpp/Seq/CodonSiteTools.cpp In file included from /<>/src/Bpp/Seq/SymbolListTools.h:43, from /<>/src/Bpp/Seq/CodonSiteTools.h:43, from /<>/src/Bpp/Seq/CodonSiteTools.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 19%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/AbstractSequenceContainer.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/AbstractSequenceContainer.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/AbstractSequenceContainer.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/AbstractSequenceContainer.cpp.o -c /<>/src/Bpp/Seq/Container/AbstractSequenceContainer.cpp [ 20%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/NumericAlphabet.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/NumericAlphabet.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/NumericAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/NumericAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/NumericAlphabet.cpp In file included from /<>/src/Bpp/Seq/Container/../Sequence.h:44, from /<>/src/Bpp/Seq/Container/AbstractSequenceContainer.h:44, from /<>/src/Bpp/Seq/Container/AbstractSequenceContainer.cpp:41: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 20%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/AlignedSequenceContainer.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/AlignedSequenceContainer.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/AlignedSequenceContainer.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/AlignedSequenceContainer.cpp.o -c /<>/src/Bpp/Seq/Container/AlignedSequenceContainer.cpp In file included from /usr/include/c++/13/map:62, from /<>/src/Bpp/Seq/App/../GeneticCode/../Alphabet/AbstractAlphabet.h:52, from /<>/src/Bpp/Seq/App/../GeneticCode/../Alphabet/LetterAlphabet.h:49, from /<>/src/Bpp/Seq/App/../GeneticCode/../Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Seq/App/../GeneticCode/../Alphabet/CodonAlphabet.h:43, from /<>/src/Bpp/Seq/App/../GeneticCode/GeneticCode.h:44: /usr/include/c++/13/bits/stl_tree.h: In function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/13/bits/stl_tree.h:2210:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2210 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/map:62, from /<>/src/Bpp/Seq/SymbolListTools.h:48: /usr/include/c++/13/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Container/../Site.h:43, from /<>/src/Bpp/Seq/Container/AlignedSequenceContainer.h:44, from /<>/src/Bpp/Seq/Container/AlignedSequenceContainer.cpp:41: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/map:62, from /<>/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /<>/src/Bpp/Seq/Alphabet/NumericAlphabet.h:44, from /<>/src/Bpp/Seq/Alphabet/NumericAlphabet.cpp:40: /usr/include/c++/13/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = double; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/map:63: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = double; _Tp = unsigned int; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘void bpp::NumericAlphabet::remap()’ at /<>/src/Bpp/Seq/Alphabet/NumericAlphabet.cpp:159:16: /usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = double; _Tp = unsigned int; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::NumericAlphabet::setState(size_t, bpp::AlphabetState*)’ at /<>/src/Bpp/Seq/Alphabet/NumericAlphabet.cpp:87:14: /usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = double; _Tp = unsigned int; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::NumericAlphabet::registerState(bpp::AlphabetState*)’ at /<>/src/Bpp/Seq/Alphabet/NumericAlphabet.cpp:99:16: /usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/map:63: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static bpp::Site* bpp::CodonSiteTools::generateCodonSiteWithoutRareVariant(const bpp::Site&, const bpp::GeneticCode&, double)’ at /<>/src/Bpp/Seq/CodonSiteTools.cpp:204:31: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static bpp::Site* bpp::CodonSiteTools::generateCodonSiteWithoutRareVariant(const bpp::Site&, const bpp::GeneticCode&, double)’ at /<>/src/Bpp/Seq/CodonSiteTools.cpp:204:66: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static bpp::Site* bpp::CodonSiteTools::generateCodonSiteWithoutRareVariant(const bpp::Site&, const bpp::GeneticCode&, double)’ at /<>/src/Bpp/Seq/CodonSiteTools.cpp:204:101: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 21%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp.o -c /<>/src/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp [ 22%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/ProteicAlphabet.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/ProteicAlphabet.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/ProteicAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/ProteicAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/ProteicAlphabet.cpp In file included from /<>/src/Bpp/Seq/Container/../Site.h:43, from /<>/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:43, from /<>/src/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp:40: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 22%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/MapSequenceContainer.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/MapSequenceContainer.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/MapSequenceContainer.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/MapSequenceContainer.cpp.o -c /<>/src/Bpp/Seq/Container/MapSequenceContainer.cpp In file included from /<>/src/Bpp/Seq/Container/../Sequence.h:44, from /<>/src/Bpp/Seq/Container/MapSequenceContainer.h:46, from /<>/src/Bpp/Seq/Container/MapSequenceContainer.cpp:42: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 23%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SequenceContainerIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SequenceContainerIterator.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SequenceContainerIterator.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SequenceContainerIterator.cpp.o -c /<>/src/Bpp/Seq/Container/SequenceContainerIterator.cpp In file included from /<>/src/Bpp/Seq/Container/../Sequence.h:44, from /<>/src/Bpp/Seq/Container/SequenceContainerIterator.h:43, from /<>/src/Bpp/Seq/Container/SequenceContainerIterator.cpp:40: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 24%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SequenceContainerTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SequenceContainerTools.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SequenceContainerTools.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SequenceContainerTools.cpp.o -c /<>/src/Bpp/Seq/Container/SequenceContainerTools.cpp [ 24%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SiteContainerExceptions.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SiteContainerExceptions.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SiteContainerExceptions.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SiteContainerExceptions.cpp.o -c /<>/src/Bpp/Seq/Container/SiteContainerExceptions.cpp In file included from /<>/src/Bpp/Seq/Container/../Sequence.h:44, from /<>/src/Bpp/Seq/Container/SequenceContainer.h:45, from /<>/src/Bpp/Seq/Container/SequenceContainerTools.h:50, from /<>/src/Bpp/Seq/Container/SequenceContainerTools.cpp:40: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 25%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SiteContainerIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SiteContainerIterator.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SiteContainerIterator.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SiteContainerIterator.cpp.o -c /<>/src/Bpp/Seq/Container/SiteContainerIterator.cpp In file included from /usr/include/c++/13/map:62, from /<>/src/Bpp/Seq/Container/SequenceContainerTools.h:47: /usr/include/c++/13/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/map:63: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static void bpp::SequenceContainerTools::getFrequencies(const bpp::SequenceContainer&, std::map&, double)’ at /<>/src/Bpp/Seq/Container/SequenceContainerTools.cpp:162:15: /usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static void bpp::SequenceContainerTools::getFrequencies(const bpp::SequenceContainer&, std::map&, double)’ at /<>/src/Bpp/Seq/Container/SequenceContainerTools.cpp:172:10: /usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Container/../Site.h:43, from /<>/src/Bpp/Seq/Container/SiteContainerIterator.h:43, from /<>/src/Bpp/Seq/Container/SiteContainerIterator.cpp:40: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 25%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SiteContainerTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SiteContainerTools.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SiteContainerTools.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SiteContainerTools.cpp.o -c /<>/src/Bpp/Seq/Container/SiteContainerTools.cpp [ 25%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/RNA.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/RNA.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/RNA.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/RNA.cpp.o -c /<>/src/Bpp/Seq/Alphabet/RNA.cpp [ 26%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/VectorSequenceContainer.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/VectorSequenceContainer.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/VectorSequenceContainer.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/VectorSequenceContainer.cpp.o -c /<>/src/Bpp/Seq/Container/VectorSequenceContainer.cpp In file included from /<>/src/Bpp/Seq/Container/../Site.h:43, from /<>/src/Bpp/Seq/Container/SiteContainer.h:43, from /<>/src/Bpp/Seq/Container/SiteContainerTools.h:43, from /<>/src/Bpp/Seq/Container/SiteContainerTools.cpp:41: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Container/../Sequence.h:44, from /<>/src/Bpp/Seq/Container/VectorSequenceContainer.h:44, from /<>/src/Bpp/Seq/Container/VectorSequenceContainer.cpp:41: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 26%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/VectorSiteContainer.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/VectorSiteContainer.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/VectorSiteContainer.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/VectorSiteContainer.cpp.o -c /<>/src/Bpp/Seq/Container/VectorSiteContainer.cpp In file included from /<>/src/Bpp/Seq/Container/../Site.h:43, from /<>/src/Bpp/Seq/Container/VectorSiteContainer.h:43, from /<>/src/Bpp/Seq/Container/VectorSiteContainer.cpp:40: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 27%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/DNAToRNA.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/DNAToRNA.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/DNAToRNA.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/DNAToRNA.cpp.o -c /<>/src/Bpp/Seq/DNAToRNA.cpp In file included from /usr/include/c++/13/map:62, from /usr/include/Bpp/Numeric/AbstractParametrizable.h:47, from /usr/include/Bpp/Numeric/Function/Functions.h:45, from /usr/include/Bpp/Numeric/NumTools.h:43, from /usr/include/Bpp/Numeric/VectorTools.h:44, from /<>/src/Bpp/Seq/Container/SiteContainer.h:47: /usr/include/c++/13/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/Transliterator.h:44, from /<>/src/Bpp/Seq/DNAToRNA.h:43, from /<>/src/Bpp/Seq/DNAToRNA.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/map:63: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static void bpp::SiteContainerTools::removeGapSites(bpp::SiteContainer&, double)’ at /<>/src/Bpp/Seq/Container/SiteContainerTools.cpp:334:16: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static bpp::SiteContainer* bpp::SiteContainerTools::removeGapSites(const bpp::SiteContainer&, double)’ at /<>/src/Bpp/Seq/Container/SiteContainerTools.cpp:321:16: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 28%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/RNY.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/RNY.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/RNY.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/RNY.cpp.o -c /<>/src/Bpp/Seq/Alphabet/RNY.cpp [ 28%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/DistanceMatrix.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/DistanceMatrix.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/DistanceMatrix.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/DistanceMatrix.cpp.o -c /<>/src/Bpp/Seq/DistanceMatrix.cpp In file included from /<>/src/Bpp/Seq/Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/Alphabet/RNY.cpp:44: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 29%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.cpp.o -c /<>/src/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.cpp In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.cpp:40: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 29%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.cpp.o -c /<>/src/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.cpp In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.cpp:39: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 30%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/GeneticCode.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/GeneticCode.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/GeneticCode.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/GeneticCode.cpp.o -c /<>/src/Bpp/Seq/GeneticCode/GeneticCode.cpp [ 30%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/WordAlphabet.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/WordAlphabet.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/WordAlphabet.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/WordAlphabet.cpp.o -c /<>/src/Bpp/Seq/Alphabet/WordAlphabet.cpp In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.cpp:40: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/Alphabet/WordAlphabet.cpp:41: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 31%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.cpp.o -c /<>/src/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.cpp In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.h:44, from /<>/src/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.cpp:40: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 31%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.cpp.o -c /<>/src/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.cpp [ 32%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/StandardGeneticCode.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/StandardGeneticCode.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/StandardGeneticCode.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/StandardGeneticCode.cpp.o -c /<>/src/Bpp/Seq/GeneticCode/StandardGeneticCode.cpp In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.h:44, from /<>/src/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.cpp:40: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/StandardGeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/StandardGeneticCode.cpp:40: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 33%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp.o -c /<>/src/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp In file included from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp:41: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 33%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.cpp.o -c /<>/src/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.cpp [ 33%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp.o -c /<>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.cpp:40: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 34%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.cpp.o -c /<>/src/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.cpp [ 34%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlignmentReaderFormat.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlignmentReaderFormat.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlignmentReaderFormat.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlignmentReaderFormat.cpp.o -c /<>/src/Bpp/Seq/Io/BppOAlignmentReaderFormat.cpp In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.h:44, from /<>/src/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.cpp:40: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/IoSequenceFactory.h:43, from /<>/src/Bpp/Seq/Io/BppOAlignmentReaderFormat.h:43, from /<>/src/Bpp/Seq/Io/BppOAlignmentReaderFormat.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp:41: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 35%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp.o -c /<>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp [ 36%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlignmentWriterFormat.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlignmentWriterFormat.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlignmentWriterFormat.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlignmentWriterFormat.cpp.o -c /<>/src/Bpp/Seq/Io/BppOAlignmentWriterFormat.cpp [ 36%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp.o -c /<>/src/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp In file included from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp:43: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/IoSequenceFactory.h:43, from /<>/src/Bpp/Seq/Io/BppOAlignmentWriterFormat.h:43, from /<>/src/Bpp/Seq/Io/BppOAlignmentWriterFormat.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 37%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp.o -c /<>/src/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp In file included from /<>/src/Bpp/Seq/Io/../Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/../Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/Io/../Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/Io/../Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp:41: /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Io/../Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/../Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/Io/../Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/Io/../Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp:42: /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 37%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceReaderFormat.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceReaderFormat.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceReaderFormat.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceReaderFormat.cpp.o -c /<>/src/Bpp/Seq/Io/BppOSequenceReaderFormat.cpp In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/IoSequenceFactory.h:43, from /<>/src/Bpp/Seq/Io/BppOSequenceReaderFormat.h:43, from /<>/src/Bpp/Seq/Io/BppOSequenceReaderFormat.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 38%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.cpp.o -c /<>/src/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.cpp [ 38%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp.o -c /<>/src/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.cpp [ 39%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceWriterFormat.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceWriterFormat.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceWriterFormat.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceWriterFormat.cpp.o -c /<>/src/Bpp/Seq/Io/BppOSequenceWriterFormat.cpp In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/IoSequenceFactory.h:43, from /<>/src/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.h:43, from /<>/src/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/IoSequenceFactory.h:43, from /<>/src/Bpp/Seq/Io/BppOSequenceWriterFormat.h:43, from /<>/src/Bpp/Seq/Io/BppOSequenceWriterFormat.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 39%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Clustal.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Clustal.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Clustal.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Clustal.cpp.o -c /<>/src/Bpp/Seq/Io/Clustal.cpp [ 40%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Dcse.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Dcse.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Dcse.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Dcse.cpp.o -c /<>/src/Bpp/Seq/Io/Dcse.cpp [ 41%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp.o -c /<>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp In file included from /<>/src/Bpp/Seq/Io/../Container/../Site.h:43, from /<>/src/Bpp/Seq/Io/../Container/AlignedSequenceContainer.h:44, from /<>/src/Bpp/Seq/Io/AbstractIAlignment.h:43, from /<>/src/Bpp/Seq/Io/Clustal.h:43, from /<>/src/Bpp/Seq/Io/Clustal.cpp:40: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Io/../Container/../Site.h:43, from /<>/src/Bpp/Seq/Io/../Container/AlignedSequenceContainer.h:44, from /<>/src/Bpp/Seq/Io/AbstractIAlignment.h:43, from /<>/src/Bpp/Seq/Io/Dcse.h:43, from /<>/src/Bpp/Seq/Io/Dcse.cpp:40: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 41%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Fasta.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Fasta.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Fasta.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Fasta.cpp.o -c /<>/src/Bpp/Seq/Io/Fasta.cpp In file included from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.cpp:44: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/AbstractISequence.h:43, from /<>/src/Bpp/Seq/Io/Fasta.h:45, from /<>/src/Bpp/Seq/Io/Fasta.cpp:42: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 42%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/GenBank.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/GenBank.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/GenBank.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/GenBank.cpp.o -c /<>/src/Bpp/Seq/Io/GenBank.cpp In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/AbstractISequence.h:43, from /<>/src/Bpp/Seq/Io/GenBank.h:43, from /<>/src/Bpp/Seq/Io/GenBank.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 42%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/IoSequenceFactory.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/IoSequenceFactory.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/IoSequenceFactory.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/IoSequenceFactory.cpp.o -c /<>/src/Bpp/Seq/Io/IoSequenceFactory.cpp In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/IoSequenceFactory.h:43, from /<>/src/Bpp/Seq/Io/IoSequenceFactory.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 43%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Mase.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Mase.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Mase.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Mase.cpp.o -c /<>/src/Bpp/Seq/Io/Mase.cpp In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/AbstractISequence.h:43, from /<>/src/Bpp/Seq/Io/Mase.h:44, from /<>/src/Bpp/Seq/Io/Mase.cpp:41: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 43%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/MaseTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/MaseTools.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/MaseTools.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/MaseTools.cpp.o -c /<>/src/Bpp/Seq/Io/MaseTools.cpp [ 44%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/NexusIoSequence.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/NexusIoSequence.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/NexusIoSequence.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/NexusIoSequence.cpp.o -c /<>/src/Bpp/Seq/Io/NexusIoSequence.cpp In file included from /<>/src/Bpp/Seq/Io/../Container/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/../Container/SequenceContainer.h:45, from /<>/src/Bpp/Seq/Io/MaseTools.h:43, from /<>/src/Bpp/Seq/Io/MaseTools.cpp:40: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Io/../Container/../Site.h:43, from /<>/src/Bpp/Seq/Io/../Container/AlignedSequenceContainer.h:44, from /<>/src/Bpp/Seq/Io/AbstractIAlignment.h:43, from /<>/src/Bpp/Seq/Io/NexusIoSequence.h:43, from /<>/src/Bpp/Seq/Io/NexusIoSequence.cpp:40: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 44%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp.o -c /<>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp In file included from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp:46: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/AlphabetIndex/../Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 44%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/NexusTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/NexusTools.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/NexusTools.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/NexusTools.cpp.o -c /<>/src/Bpp/Seq/Io/NexusTools.cpp [ 45%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/PhredPhd.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/PhredPhd.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/PhredPhd.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/PhredPhd.cpp.o -c /<>/src/Bpp/Seq/Io/PhredPhd.cpp [ 45%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/PhredPoly.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/PhredPoly.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/PhredPoly.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/PhredPoly.cpp.o -c /<>/src/Bpp/Seq/Io/PhredPoly.cpp In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequenceStream.h:44, from /<>/src/Bpp/Seq/Io/PhredPhd.h:43, from /<>/src/Bpp/Seq/Io/PhredPhd.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequenceStream.h:44, from /<>/src/Bpp/Seq/Io/PhredPoly.h:43, from /<>/src/Bpp/Seq/Io/PhredPoly.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 46%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Phylip.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Phylip.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Phylip.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Phylip.cpp.o -c /<>/src/Bpp/Seq/Io/Phylip.cpp In file included from /<>/src/Bpp/Seq/Io/../Container/../Site.h:43, from /<>/src/Bpp/Seq/Io/../Container/AlignedSequenceContainer.h:44, from /<>/src/Bpp/Seq/Io/AbstractIAlignment.h:43, from /<>/src/Bpp/Seq/Io/Phylip.h:43, from /<>/src/Bpp/Seq/Io/Phylip.cpp:40: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 47%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Stockholm.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Stockholm.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Stockholm.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Stockholm.cpp.o -c /<>/src/Bpp/Seq/Io/Stockholm.cpp [ 47%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/StreamSequenceIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/StreamSequenceIterator.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/StreamSequenceIterator.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/StreamSequenceIterator.cpp.o -c /<>/src/Bpp/Seq/Io/StreamSequenceIterator.cpp In file included from /<>/src/Bpp/Seq/Io/../Container/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/../Container/SequenceContainer.h:45, from /<>/src/Bpp/Seq/Io/OSequence.h:44, from /<>/src/Bpp/Seq/Io/AbstractOAlignment.h:43, from /<>/src/Bpp/Seq/Io/Stockholm.h:43, from /<>/src/Bpp/Seq/Io/Stockholm.cpp:42: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/../SequenceIterator.h:43, from /<>/src/Bpp/Seq/Io/StreamSequenceIterator.h:43, from /<>/src/Bpp/Seq/Io/StreamSequenceIterator.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 48%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/SimpleScore.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/SimpleScore.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/SimpleScore.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/SimpleScore.cpp.o -c /<>/src/Bpp/Seq/AlphabetIndex/SimpleScore.cpp [ 49%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/NucleicAcidsReplication.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/NucleicAcidsReplication.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/NucleicAcidsReplication.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/NucleicAcidsReplication.cpp.o -c /<>/src/Bpp/Seq/NucleicAcidsReplication.cpp In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/Transliterator.h:44, from /<>/src/Bpp/Seq/NucleicAcidsReplication.h:43, from /<>/src/Bpp/Seq/NucleicAcidsReplication.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 50%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/App/SequenceApplicationTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/App/SequenceApplicationTools.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/App/SequenceApplicationTools.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/App/SequenceApplicationTools.cpp.o -c /<>/src/Bpp/Seq/App/SequenceApplicationTools.cpp [ 50%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Sequence.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Sequence.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Sequence.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Sequence.cpp.o -c /<>/src/Bpp/Seq/Sequence.cpp In file included from /<>/src/Bpp/Seq/App/../GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/App/../GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/App/../GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/App/SequenceApplicationTools.h:45, from /<>/src/Bpp/Seq/App/SequenceApplicationTools.cpp:41: /<>/src/Bpp/Seq/App/../GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/App/../GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/App/../GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/App/../GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/App/../GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/Sequence.cpp:41: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 51%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceExceptions.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceExceptions.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceExceptions.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceExceptions.cpp.o -c /<>/src/Bpp/Seq/SequenceExceptions.cpp [ 51%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequencePositionIterators.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequencePositionIterators.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequencePositionIterators.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequencePositionIterators.cpp.o -c /<>/src/Bpp/Seq/SequencePositionIterators.cpp In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/SequenceExceptions.cpp:41: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/SequencePositionIterators.h:46, from /<>/src/Bpp/Seq/SequencePositionIterators.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 52%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceTools.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceTools.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceTools.cpp.o -c /<>/src/Bpp/Seq/SequenceTools.cpp [ 52%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWalker.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWalker.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWalker.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWalker.cpp.o -c /<>/src/Bpp/Seq/SequenceWalker.cpp In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/SequenceTools.h:49, from /<>/src/Bpp/Seq/SequenceTools.cpp:42: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/SequenceWalker.h:43, from /<>/src/Bpp/Seq/SequenceWalker.cpp:43: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 53%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithAnnotation.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithAnnotation.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithAnnotation.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithAnnotation.cpp.o -c /<>/src/Bpp/Seq/SequenceWithAnnotation.cpp In file included from /usr/include/c++/13/map:62, from /<>/src/Bpp/Seq/App/../GeneticCode/../Alphabet/AbstractAlphabet.h:52, from /<>/src/Bpp/Seq/App/../GeneticCode/../Alphabet/LetterAlphabet.h:49, from /<>/src/Bpp/Seq/App/../GeneticCode/../Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Seq/App/../GeneticCode/../Alphabet/CodonAlphabet.h:43, from /<>/src/Bpp/Seq/App/../GeneticCode/GeneticCode.h:44: /usr/include/c++/13/bits/stl_tree.h: In function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/13/bits/stl_tree.h:2210:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2210 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 53%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithAnnotationTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithAnnotationTools.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithAnnotationTools.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithAnnotationTools.cpp.o -c /<>/src/Bpp/Seq/SequenceWithAnnotationTools.cpp In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/SequenceWithAnnotation.h:43, from /<>/src/Bpp/Seq/SequenceWithAnnotation.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/SequenceTools.h:49, from /<>/src/Bpp/Seq/SequenceWithAnnotationTools.h:43, from /<>/src/Bpp/Seq/SequenceWithAnnotationTools.cpp:40: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 54%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithQuality.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithQuality.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithQuality.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithQuality.cpp.o -c /<>/src/Bpp/Seq/SequenceWithQuality.cpp In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/SequenceWithAnnotation.h:43, from /<>/src/Bpp/Seq/SequenceWithQuality.h:45, from /<>/src/Bpp/Seq/SequenceWithQuality.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 55%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithQualityTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithQualityTools.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithQualityTools.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithQualityTools.cpp.o -c /<>/src/Bpp/Seq/SequenceWithQualityTools.cpp /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/SequenceTools.h:49, from /<>/src/Bpp/Seq/SequenceWithQualityTools.h:44, from /<>/src/Bpp/Seq/SequenceWithQualityTools.cpp:41: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 55%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Site.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Site.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Site.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Site.cpp.o -c /<>/src/Bpp/Seq/Site.cpp In file included from /<>/src/Bpp/Seq/Site.h:43, from /<>/src/Bpp/Seq/Site.cpp:41: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 55%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/CodonSiteTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/CodonSiteTools.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/CodonSiteTools.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/CodonSiteTools.cpp.o -c /<>/src/Bpp/Seq/CodonSiteTools.cpp [ 56%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SiteExceptions.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SiteExceptions.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SiteExceptions.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SiteExceptions.cpp.o -c /<>/src/Bpp/Seq/SiteExceptions.cpp [ 57%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/AbstractSequenceContainer.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/AbstractSequenceContainer.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/AbstractSequenceContainer.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/AbstractSequenceContainer.cpp.o -c /<>/src/Bpp/Seq/Container/AbstractSequenceContainer.cpp In file included from /<>/src/Bpp/Seq/SymbolListTools.h:43, from /<>/src/Bpp/Seq/CodonSiteTools.h:43, from /<>/src/Bpp/Seq/CodonSiteTools.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Site.h:43, from /<>/src/Bpp/Seq/SiteExceptions.cpp:39: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Container/../Sequence.h:44, from /<>/src/Bpp/Seq/Container/AbstractSequenceContainer.h:44, from /<>/src/Bpp/Seq/Container/AbstractSequenceContainer.cpp:41: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 57%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SiteTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SiteTools.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SiteTools.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SiteTools.cpp.o -c /<>/src/Bpp/Seq/SiteTools.cpp [ 57%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/AlignedSequenceContainer.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/AlignedSequenceContainer.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/AlignedSequenceContainer.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/AlignedSequenceContainer.cpp.o -c /<>/src/Bpp/Seq/Container/AlignedSequenceContainer.cpp In file included from /<>/src/Bpp/Seq/SymbolListTools.h:43, from /<>/src/Bpp/Seq/SiteTools.h:44, from /<>/src/Bpp/Seq/SiteTools.cpp:41: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Container/../Site.h:43, from /<>/src/Bpp/Seq/Container/AlignedSequenceContainer.h:44, from /<>/src/Bpp/Seq/Container/AlignedSequenceContainer.cpp:41: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/map:62, from /<>/src/Bpp/Seq/SymbolListTools.h:48: /usr/include/c++/13/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 58%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/StringSequenceTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/StringSequenceTools.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/StringSequenceTools.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/StringSequenceTools.cpp.o -c /<>/src/Bpp/Seq/StringSequenceTools.cpp In file included from /usr/include/c++/13/map:62, from /<>/src/Bpp/Seq/SymbolListTools.h:48: /usr/include/c++/13/bits/stl_tree.h: In function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/13/bits/stl_tree.h:2210:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2210 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/map:63: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static bpp::Site* bpp::CodonSiteTools::generateCodonSiteWithoutRareVariant(const bpp::Site&, const bpp::GeneticCode&, double)’ at /<>/src/Bpp/Seq/CodonSiteTools.cpp:204:31: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static bpp::Site* bpp::CodonSiteTools::generateCodonSiteWithoutRareVariant(const bpp::Site&, const bpp::GeneticCode&, double)’ at /<>/src/Bpp/Seq/CodonSiteTools.cpp:204:66: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static bpp::Site* bpp::CodonSiteTools::generateCodonSiteWithoutRareVariant(const bpp::Site&, const bpp::GeneticCode&, double)’ at /<>/src/Bpp/Seq/CodonSiteTools.cpp:204:101: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/map:63: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::SiteTools::jointEntropy(const bpp::Site&, const bpp::Site&, bool)’ at /<>/src/Bpp/Seq/SiteTools.cpp:286:57: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::SiteTools::jointEntropy(const bpp::Site&, const bpp::Site&, bool)’ at /<>/src/Bpp/Seq/SiteTools.cpp:294:57: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/StringSequenceTools.cpp:42: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::SiteTools::mutualInformation(const bpp::Site&, const bpp::Site&, bool)’ at /<>/src/Bpp/Seq/SiteTools.cpp:241:57: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::SiteTools::mutualInformation(const bpp::Site&, const bpp::Site&, bool)’ at /<>/src/Bpp/Seq/SiteTools.cpp:259:57: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72, from /<>/src/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Seq/SymbolList.h:43: /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘static std::vector bpp::MapTools::getValues(const std::map&) [with Key = int; T = double]’ at /usr/include/Bpp/Utils/MapTools.h:119:21, inlined from ‘static double bpp::SiteTools::heterozygosity(const bpp::Site&)’ at /<>/src/Bpp/Seq/SiteTools.cpp:326:43: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘static std::vector bpp::MapTools::getValues(const std::map&) [with Key = int; T = double]’ at /usr/include/Bpp/Utils/MapTools.h:119:21, inlined from ‘static double bpp::SiteTools::heterozygosity(const bpp::Site&)’ at /<>/src/Bpp/Seq/SiteTools.cpp:327:67: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 59%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp.o -c /<>/src/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp [ 59%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/MapSequenceContainer.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/MapSequenceContainer.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/MapSequenceContainer.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/MapSequenceContainer.cpp.o -c /<>/src/Bpp/Seq/Container/MapSequenceContainer.cpp [ 59%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SymbolList.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SymbolList.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SymbolList.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SymbolList.cpp.o -c /<>/src/Bpp/Seq/SymbolList.cpp In file included from /usr/include/c++/13/map:62, from /<>/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /<>/src/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /<>/src/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Seq/Alphabet/DNA.h:44, from /<>/src/Bpp/Seq/Alphabet/AlphabetTools.h:43: /usr/include/c++/13/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = char; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Container/../Site.h:43, from /<>/src/Bpp/Seq/Container/CompressedVectorSiteContainer.h:43, from /<>/src/Bpp/Seq/Container/CompressedVectorSiteContainer.cpp:40: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Container/../Sequence.h:44, from /<>/src/Bpp/Seq/Container/MapSequenceContainer.h:46, from /<>/src/Bpp/Seq/Container/MapSequenceContainer.cpp:42: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/SymbolList.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/map:63: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::StringSequenceTools::getGCcontent(const std::string&, size_t, size_t)’ at /<>/src/Bpp/Seq/StringSequenceTools.cpp:214:25: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::StringSequenceTools::getGCcontent(const std::string&, size_t, size_t)’ at /<>/src/Bpp/Seq/StringSequenceTools.cpp:216:25: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::StringSequenceTools::getGCcontent(const std::string&, size_t, size_t)’ at /<>/src/Bpp/Seq/StringSequenceTools.cpp:218:25: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::StringSequenceTools::getGCcontent(const std::string&, size_t, size_t)’ at /<>/src/Bpp/Seq/StringSequenceTools.cpp:220:25: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::StringSequenceTools::getGCcontent(const std::string&, size_t, size_t)’ at /<>/src/Bpp/Seq/StringSequenceTools.cpp:222:25: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::StringSequenceTools::getGCcontent(const std::string&, size_t, size_t)’ at /<>/src/Bpp/Seq/StringSequenceTools.cpp:223:17: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::StringSequenceTools::getGCcontent(const std::string&, size_t, size_t)’ at /<>/src/Bpp/Seq/StringSequenceTools.cpp:225:25: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::StringSequenceTools::getGCcontent(const std::string&, size_t, size_t)’ at /<>/src/Bpp/Seq/StringSequenceTools.cpp:226:17: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::StringSequenceTools::getGCcontent(const std::string&, size_t, size_t)’ at /<>/src/Bpp/Seq/StringSequenceTools.cpp:228:25: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::StringSequenceTools::getGCcontent(const std::string&, size_t, size_t)’ at /<>/src/Bpp/Seq/StringSequenceTools.cpp:229:17: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::StringSequenceTools::getGCcontent(const std::string&, size_t, size_t)’ at /<>/src/Bpp/Seq/StringSequenceTools.cpp:231:25: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::StringSequenceTools::getGCcontent(const std::string&, size_t, size_t)’ at /<>/src/Bpp/Seq/StringSequenceTools.cpp:232:17: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::StringSequenceTools::getGCcontent(const std::string&, size_t, size_t)’ at /<>/src/Bpp/Seq/StringSequenceTools.cpp:234:25: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::StringSequenceTools::getGCcontent(const std::string&, size_t, size_t)’ at /<>/src/Bpp/Seq/StringSequenceTools.cpp:235:17: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::StringSequenceTools::getGCcontent(const std::string&, size_t, size_t)’ at /<>/src/Bpp/Seq/StringSequenceTools.cpp:237:25: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::StringSequenceTools::getGCcontent(const std::string&, size_t, size_t)’ at /<>/src/Bpp/Seq/StringSequenceTools.cpp:238:17: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::StringSequenceTools::getGCcontent(const std::string&, size_t, size_t)’ at /<>/src/Bpp/Seq/StringSequenceTools.cpp:240:25: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::StringSequenceTools::getGCcontent(const std::string&, size_t, size_t)’ at /<>/src/Bpp/Seq/StringSequenceTools.cpp:241:17: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::StringSequenceTools::getGCcontent(const std::string&, size_t, size_t)’ at /<>/src/Bpp/Seq/StringSequenceTools.cpp:242:17: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::StringSequenceTools::getGCcontent(const std::string&, size_t, size_t)’ at /<>/src/Bpp/Seq/StringSequenceTools.cpp:244:25: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::StringSequenceTools::getGCcontent(const std::string&, size_t, size_t)’ at /<>/src/Bpp/Seq/StringSequenceTools.cpp:245:17: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::StringSequenceTools::getGCcontent(const std::string&, size_t, size_t)’ at /<>/src/Bpp/Seq/StringSequenceTools.cpp:246:17: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::StringSequenceTools::getGCcontent(const std::string&, size_t, size_t)’ at /<>/src/Bpp/Seq/StringSequenceTools.cpp:248:25: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::StringSequenceTools::getGCcontent(const std::string&, size_t, size_t)’ at /<>/src/Bpp/Seq/StringSequenceTools.cpp:249:17: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::StringSequenceTools::getGCcontent(const std::string&, size_t, size_t)’ at /<>/src/Bpp/Seq/StringSequenceTools.cpp:250:17: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::StringSequenceTools::getGCcontent(const std::string&, size_t, size_t)’ at /<>/src/Bpp/Seq/StringSequenceTools.cpp:252:25: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::StringSequenceTools::getGCcontent(const std::string&, size_t, size_t)’ at /<>/src/Bpp/Seq/StringSequenceTools.cpp:253:17: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::StringSequenceTools::getGCcontent(const std::string&, size_t, size_t)’ at /<>/src/Bpp/Seq/StringSequenceTools.cpp:254:17: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::StringSequenceTools::getGCcontent(const std::string&, size_t, size_t)’ at /<>/src/Bpp/Seq/StringSequenceTools.cpp:259:24: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::StringSequenceTools::getGCcontent(const std::string&, size_t, size_t)’ at /<>/src/Bpp/Seq/StringSequenceTools.cpp:260:17: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::StringSequenceTools::getGCcontent(const std::string&, size_t, size_t)’ at /<>/src/Bpp/Seq/StringSequenceTools.cpp:261:17: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::StringSequenceTools::getGCcontent(const std::string&, size_t, size_t)’ at /<>/src/Bpp/Seq/StringSequenceTools.cpp:262:17: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::StringSequenceTools::getGCcontent(const std::string&, size_t, size_t)’ at /<>/src/Bpp/Seq/StringSequenceTools.cpp:267:21: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::StringSequenceTools::getGCcontent(const std::string&, size_t, size_t)’ at /<>/src/Bpp/Seq/StringSequenceTools.cpp:267:35: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 60%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SymbolListTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SymbolListTools.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SymbolListTools.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SymbolListTools.cpp.o -c /<>/src/Bpp/Seq/SymbolListTools.cpp In file included from /<>/src/Bpp/Seq/SymbolListTools.h:43, from /<>/src/Bpp/Seq/SymbolListTools.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 60%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Transliterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Transliterator.cpp.o -MF CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Transliterator.cpp.o.d -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Transliterator.cpp.o -c /<>/src/Bpp/Seq/Transliterator.cpp In file included from /usr/include/c++/13/map:62, from /<>/src/Bpp/Seq/SymbolListTools.h:48: /usr/include/c++/13/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 61%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SequenceContainerIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SequenceContainerIterator.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SequenceContainerIterator.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SequenceContainerIterator.cpp.o -c /<>/src/Bpp/Seq/Container/SequenceContainerIterator.cpp In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/Transliterator.h:44, from /<>/src/Bpp/Seq/Transliterator.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/map:63: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static void bpp::SymbolListTools::getCounts(const bpp::SymbolList&, std::map&, bool)’ at /<>/src/Bpp/Seq/SymbolListTools.cpp:56:21: /usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static void bpp::SymbolListTools::getCounts(const bpp::SymbolList&, std::map&, bool)’ at /<>/src/Bpp/Seq/SymbolListTools.cpp:64:64: /usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static void bpp::SymbolListTools::getFrequencies(const bpp::SymbolList&, std::map&, bool)’ at /<>/src/Bpp/Seq/SymbolListTools.cpp:99:25: /usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static void bpp::SymbolListTools::getCounts(const bpp::SymbolList&, const bpp::SymbolList&, std::map >&, bool)’ at /<>/src/Bpp/Seq/SymbolListTools.cpp:75:32: /usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static void bpp::SymbolListTools::getCounts(const bpp::SymbolList&, const bpp::SymbolList&, std::map >&, bool)’ at /<>/src/Bpp/Seq/SymbolListTools.cpp:87:38: /usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static void bpp::SymbolListTools::getFrequencies(const bpp::SymbolList&, const bpp::SymbolList&, std::map >&, bool)’ at /<>/src/Bpp/Seq/SymbolListTools.cpp:111:35: /usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Container/../Sequence.h:44, from /<>/src/Bpp/Seq/Container/SequenceContainerIterator.h:43, from /<>/src/Bpp/Seq/Container/SequenceContainerIterator.cpp:40: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 61%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SequenceContainerTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SequenceContainerTools.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SequenceContainerTools.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SequenceContainerTools.cpp.o -c /<>/src/Bpp/Seq/Container/SequenceContainerTools.cpp [ 62%] Linking CXX static library libbpp-seq.a cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -P CMakeFiles/bpp-seq-static.dir/cmake_clean_target.cmake cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-seq-static.dir/link.txt --verbose=1 /usr/bin/ar qc libbpp-seq.a "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AbstractAlphabet.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AlphabetExceptions.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AlphabetTools.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/BinaryAlphabet.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/CodonAlphabet.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/DNA.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/DefaultAlphabet.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/IntegerAlphabet.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/LetterAlphabet.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/LexicalAlphabet.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/NumericAlphabet.cpp.o" 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"CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/GeneticCode.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/StandardGeneticCode.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlignmentReaderFormat.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlignmentWriterFormat.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceReaderFormat.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/BppOSequenceWriterFormat.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Clustal.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Dcse.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Fasta.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/GenBank.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/IoSequenceFactory.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Mase.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/MaseTools.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/NexusIoSequence.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/NexusTools.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/PhredPhd.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/PhredPoly.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Phylip.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/Stockholm.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Io/StreamSequenceIterator.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/NucleicAcidsReplication.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Sequence.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceExceptions.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequencePositionIterators.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceTools.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWalker.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithAnnotation.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithAnnotationTools.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithQuality.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithQualityTools.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Site.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SiteExceptions.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SiteTools.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/StringSequenceTools.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SymbolList.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SymbolListTools.cpp.o" "CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Transliterator.cpp.o" /usr/bin/ranlib libbpp-seq.a make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 62%] Built target bpp-seq-static [ 63%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SiteContainerExceptions.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SiteContainerExceptions.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SiteContainerExceptions.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SiteContainerExceptions.cpp.o -c /<>/src/Bpp/Seq/Container/SiteContainerExceptions.cpp In file included from /<>/src/Bpp/Seq/Container/../Sequence.h:44, from /<>/src/Bpp/Seq/Container/SequenceContainer.h:45, from /<>/src/Bpp/Seq/Container/SequenceContainerTools.h:50, from /<>/src/Bpp/Seq/Container/SequenceContainerTools.cpp:40: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 63%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SiteContainerIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SiteContainerIterator.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SiteContainerIterator.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SiteContainerIterator.cpp.o -c /<>/src/Bpp/Seq/Container/SiteContainerIterator.cpp [ 64%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SiteContainerTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SiteContainerTools.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SiteContainerTools.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/SiteContainerTools.cpp.o -c /<>/src/Bpp/Seq/Container/SiteContainerTools.cpp [ 65%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/VectorSequenceContainer.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/VectorSequenceContainer.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/VectorSequenceContainer.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/VectorSequenceContainer.cpp.o -c /<>/src/Bpp/Seq/Container/VectorSequenceContainer.cpp In file included from /<>/src/Bpp/Seq/Container/../Site.h:43, from /<>/src/Bpp/Seq/Container/SiteContainerIterator.h:43, from /<>/src/Bpp/Seq/Container/SiteContainerIterator.cpp:40: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/map:62, from /<>/src/Bpp/Seq/Container/SequenceContainerTools.h:47: /usr/include/c++/13/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/map:63: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static void bpp::SequenceContainerTools::getFrequencies(const bpp::SequenceContainer&, std::map&, double)’ at /<>/src/Bpp/Seq/Container/SequenceContainerTools.cpp:162:15: /usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static void bpp::SequenceContainerTools::getFrequencies(const bpp::SequenceContainer&, std::map&, double)’ at /<>/src/Bpp/Seq/Container/SequenceContainerTools.cpp:172:10: /usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Container/../Site.h:43, from /<>/src/Bpp/Seq/Container/SiteContainer.h:43, from /<>/src/Bpp/Seq/Container/SiteContainerTools.h:43, from /<>/src/Bpp/Seq/Container/SiteContainerTools.cpp:41: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Container/../Sequence.h:44, from /<>/src/Bpp/Seq/Container/VectorSequenceContainer.h:44, from /<>/src/Bpp/Seq/Container/VectorSequenceContainer.cpp:41: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 65%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/VectorSiteContainer.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/VectorSiteContainer.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/VectorSiteContainer.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Container/VectorSiteContainer.cpp.o -c /<>/src/Bpp/Seq/Container/VectorSiteContainer.cpp [ 66%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/DNAToRNA.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/DNAToRNA.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/DNAToRNA.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/DNAToRNA.cpp.o -c /<>/src/Bpp/Seq/DNAToRNA.cpp In file included from /<>/src/Bpp/Seq/Container/../Site.h:43, from /<>/src/Bpp/Seq/Container/VectorSiteContainer.h:43, from /<>/src/Bpp/Seq/Container/VectorSiteContainer.cpp:40: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/Transliterator.h:44, from /<>/src/Bpp/Seq/DNAToRNA.h:43, from /<>/src/Bpp/Seq/DNAToRNA.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 66%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/DistanceMatrix.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/DistanceMatrix.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/DistanceMatrix.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/DistanceMatrix.cpp.o -c /<>/src/Bpp/Seq/DistanceMatrix.cpp [ 67%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.cpp.o -c /<>/src/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.cpp In file included from /usr/include/c++/13/map:62, from /usr/include/Bpp/Numeric/AbstractParametrizable.h:47, from /usr/include/Bpp/Numeric/Function/Functions.h:45, from /usr/include/Bpp/Numeric/NumTools.h:43, from /usr/include/Bpp/Numeric/VectorTools.h:44, from /<>/src/Bpp/Seq/Container/SiteContainer.h:47: /usr/include/c++/13/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.cpp:40: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/map:63: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static void bpp::SiteContainerTools::removeGapSites(bpp::SiteContainer&, double)’ at /<>/src/Bpp/Seq/Container/SiteContainerTools.cpp:334:16: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 67%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.cpp.o -c /<>/src/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.cpp In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static bpp::SiteContainer* bpp::SiteContainerTools::removeGapSites(const bpp::SiteContainer&, double)’ at /<>/src/Bpp/Seq/Container/SiteContainerTools.cpp:321:16: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.cpp:39: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 68%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/GeneticCode.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/GeneticCode.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/GeneticCode.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/GeneticCode.cpp.o -c /<>/src/Bpp/Seq/GeneticCode/GeneticCode.cpp [ 68%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.cpp.o -c /<>/src/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.cpp In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.cpp:40: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 69%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.cpp.o -c /<>/src/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.cpp In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.h:44, from /<>/src/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.cpp:40: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.h:44, from /<>/src/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.cpp:40: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 69%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/StandardGeneticCode.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/StandardGeneticCode.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/StandardGeneticCode.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/StandardGeneticCode.cpp.o -c /<>/src/Bpp/Seq/GeneticCode/StandardGeneticCode.cpp In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/StandardGeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/StandardGeneticCode.cpp:40: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 70%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.cpp.o -c /<>/src/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.cpp In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.cpp:40: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 71%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.cpp.o -c /<>/src/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.cpp [ 71%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlignmentReaderFormat.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlignmentReaderFormat.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlignmentReaderFormat.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlignmentReaderFormat.cpp.o -c /<>/src/Bpp/Seq/Io/BppOAlignmentReaderFormat.cpp In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.h:44, from /<>/src/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.cpp:40: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 72%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlignmentWriterFormat.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlignmentWriterFormat.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlignmentWriterFormat.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlignmentWriterFormat.cpp.o -c /<>/src/Bpp/Seq/Io/BppOAlignmentWriterFormat.cpp In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/IoSequenceFactory.h:43, from /<>/src/Bpp/Seq/Io/BppOAlignmentReaderFormat.h:43, from /<>/src/Bpp/Seq/Io/BppOAlignmentReaderFormat.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/IoSequenceFactory.h:43, from /<>/src/Bpp/Seq/Io/BppOAlignmentWriterFormat.h:43, from /<>/src/Bpp/Seq/Io/BppOAlignmentWriterFormat.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 72%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp.o -c /<>/src/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp [ 73%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp.o -c /<>/src/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp In file included from /<>/src/Bpp/Seq/Io/../Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/../Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/Io/../Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/Io/../Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/Io/BppOAlphabetIndex1Format.cpp:41: /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 73%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOSequenceReaderFormat.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOSequenceReaderFormat.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOSequenceReaderFormat.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOSequenceReaderFormat.cpp.o -c /<>/src/Bpp/Seq/Io/BppOSequenceReaderFormat.cpp [ 74%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.cpp.o -c /<>/src/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.cpp In file included from /<>/src/Bpp/Seq/Io/../Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/../Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/Io/../Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/Io/../Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/Io/BppOAlphabetIndex2Format.cpp:42: /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/IoSequenceFactory.h:43, from /<>/src/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.h:43, from /<>/src/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/IoSequenceFactory.h:43, from /<>/src/Bpp/Seq/Io/BppOSequenceReaderFormat.h:43, from /<>/src/Bpp/Seq/Io/BppOSequenceReaderFormat.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 74%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOSequenceWriterFormat.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOSequenceWriterFormat.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOSequenceWriterFormat.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/BppOSequenceWriterFormat.cpp.o -c /<>/src/Bpp/Seq/Io/BppOSequenceWriterFormat.cpp [ 75%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Clustal.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Clustal.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Clustal.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Clustal.cpp.o -c /<>/src/Bpp/Seq/Io/Clustal.cpp In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/IoSequenceFactory.h:43, from /<>/src/Bpp/Seq/Io/BppOSequenceWriterFormat.h:43, from /<>/src/Bpp/Seq/Io/BppOSequenceWriterFormat.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Io/../Container/../Site.h:43, from /<>/src/Bpp/Seq/Io/../Container/AlignedSequenceContainer.h:44, from /<>/src/Bpp/Seq/Io/AbstractIAlignment.h:43, from /<>/src/Bpp/Seq/Io/Clustal.h:43, from /<>/src/Bpp/Seq/Io/Clustal.cpp:40: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 75%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Dcse.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Dcse.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Dcse.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Dcse.cpp.o -c /<>/src/Bpp/Seq/Io/Dcse.cpp /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 76%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Fasta.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Fasta.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Fasta.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Fasta.cpp.o -c /<>/src/Bpp/Seq/Io/Fasta.cpp In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/AbstractISequence.h:43, from /<>/src/Bpp/Seq/Io/Fasta.h:45, from /<>/src/Bpp/Seq/Io/Fasta.cpp:42: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Io/../Container/../Site.h:43, from /<>/src/Bpp/Seq/Io/../Container/AlignedSequenceContainer.h:44, from /<>/src/Bpp/Seq/Io/AbstractIAlignment.h:43, from /<>/src/Bpp/Seq/Io/Dcse.h:43, from /<>/src/Bpp/Seq/Io/Dcse.cpp:40: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 76%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/GenBank.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/GenBank.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/GenBank.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/GenBank.cpp.o -c /<>/src/Bpp/Seq/Io/GenBank.cpp In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/AbstractISequence.h:43, from /<>/src/Bpp/Seq/Io/GenBank.h:43, from /<>/src/Bpp/Seq/Io/GenBank.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 77%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/IoSequenceFactory.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/IoSequenceFactory.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/IoSequenceFactory.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/IoSequenceFactory.cpp.o -c /<>/src/Bpp/Seq/Io/IoSequenceFactory.cpp [ 78%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Mase.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Mase.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Mase.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Mase.cpp.o -c /<>/src/Bpp/Seq/Io/Mase.cpp In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/IoSequenceFactory.h:43, from /<>/src/Bpp/Seq/Io/IoSequenceFactory.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/AbstractISequence.h:43, from /<>/src/Bpp/Seq/Io/Mase.h:44, from /<>/src/Bpp/Seq/Io/Mase.cpp:41: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 78%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/MaseTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/MaseTools.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/MaseTools.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/MaseTools.cpp.o -c /<>/src/Bpp/Seq/Io/MaseTools.cpp [ 79%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/NexusIoSequence.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/NexusIoSequence.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/NexusIoSequence.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/NexusIoSequence.cpp.o -c /<>/src/Bpp/Seq/Io/NexusIoSequence.cpp In file included from /<>/src/Bpp/Seq/Io/../Container/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/../Container/SequenceContainer.h:45, from /<>/src/Bpp/Seq/Io/MaseTools.h:43, from /<>/src/Bpp/Seq/Io/MaseTools.cpp:40: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Io/../Container/../Site.h:43, from /<>/src/Bpp/Seq/Io/../Container/AlignedSequenceContainer.h:44, from /<>/src/Bpp/Seq/Io/AbstractIAlignment.h:43, from /<>/src/Bpp/Seq/Io/NexusIoSequence.h:43, from /<>/src/Bpp/Seq/Io/NexusIoSequence.cpp:40: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 79%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/NexusTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/NexusTools.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/NexusTools.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/NexusTools.cpp.o -c /<>/src/Bpp/Seq/Io/NexusTools.cpp [ 80%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/PhredPhd.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/PhredPhd.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/PhredPhd.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/PhredPhd.cpp.o -c /<>/src/Bpp/Seq/Io/PhredPhd.cpp In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequenceStream.h:44, from /<>/src/Bpp/Seq/Io/PhredPhd.h:43, from /<>/src/Bpp/Seq/Io/PhredPhd.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 80%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/PhredPoly.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/PhredPoly.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/PhredPoly.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/PhredPoly.cpp.o -c /<>/src/Bpp/Seq/Io/PhredPoly.cpp [ 81%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Phylip.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Phylip.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Phylip.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Phylip.cpp.o -c /<>/src/Bpp/Seq/Io/Phylip.cpp In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequenceStream.h:44, from /<>/src/Bpp/Seq/Io/PhredPoly.h:43, from /<>/src/Bpp/Seq/Io/PhredPoly.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 81%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Stockholm.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Stockholm.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Stockholm.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/Stockholm.cpp.o -c /<>/src/Bpp/Seq/Io/Stockholm.cpp In file included from /<>/src/Bpp/Seq/Io/../Container/../Site.h:43, from /<>/src/Bpp/Seq/Io/../Container/AlignedSequenceContainer.h:44, from /<>/src/Bpp/Seq/Io/AbstractIAlignment.h:43, from /<>/src/Bpp/Seq/Io/Phylip.h:43, from /<>/src/Bpp/Seq/Io/Phylip.cpp:40: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Io/../Container/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/../Container/SequenceContainer.h:45, from /<>/src/Bpp/Seq/Io/OSequence.h:44, from /<>/src/Bpp/Seq/Io/AbstractOAlignment.h:43, from /<>/src/Bpp/Seq/Io/Stockholm.h:43, from /<>/src/Bpp/Seq/Io/Stockholm.cpp:42: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 82%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/StreamSequenceIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/StreamSequenceIterator.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/StreamSequenceIterator.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Io/StreamSequenceIterator.cpp.o -c /<>/src/Bpp/Seq/Io/StreamSequenceIterator.cpp [ 82%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/NucleicAcidsReplication.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/NucleicAcidsReplication.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/NucleicAcidsReplication.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/NucleicAcidsReplication.cpp.o -c /<>/src/Bpp/Seq/NucleicAcidsReplication.cpp In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/Transliterator.h:44, from /<>/src/Bpp/Seq/NucleicAcidsReplication.h:43, from /<>/src/Bpp/Seq/NucleicAcidsReplication.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/../SequenceIterator.h:43, from /<>/src/Bpp/Seq/Io/StreamSequenceIterator.h:43, from /<>/src/Bpp/Seq/Io/StreamSequenceIterator.cpp:40: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 83%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Sequence.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Sequence.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Sequence.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Sequence.cpp.o -c /<>/src/Bpp/Seq/Sequence.cpp [ 84%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceExceptions.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceExceptions.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceExceptions.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceExceptions.cpp.o -c /<>/src/Bpp/Seq/SequenceExceptions.cpp In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/Sequence.cpp:41: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/SequenceExceptions.cpp:41: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 84%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequencePositionIterators.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequencePositionIterators.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequencePositionIterators.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequencePositionIterators.cpp.o -c /<>/src/Bpp/Seq/SequencePositionIterators.cpp [ 85%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceTools.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceTools.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceTools.cpp.o -c /<>/src/Bpp/Seq/SequenceTools.cpp In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/SequencePositionIterators.h:46, from /<>/src/Bpp/Seq/SequencePositionIterators.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 85%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWalker.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWalker.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWalker.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWalker.cpp.o -c /<>/src/Bpp/Seq/SequenceWalker.cpp [ 86%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithAnnotation.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithAnnotation.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithAnnotation.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithAnnotation.cpp.o -c /<>/src/Bpp/Seq/SequenceWithAnnotation.cpp In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/SequenceTools.h:49, from /<>/src/Bpp/Seq/SequenceTools.cpp:42: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/SequenceWalker.h:43, from /<>/src/Bpp/Seq/SequenceWalker.cpp:43: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/SequenceWithAnnotation.h:43, from /<>/src/Bpp/Seq/SequenceWithAnnotation.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 86%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithAnnotationTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithAnnotationTools.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithAnnotationTools.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithAnnotationTools.cpp.o -c /<>/src/Bpp/Seq/SequenceWithAnnotationTools.cpp [ 87%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithQuality.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithQuality.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithQuality.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithQuality.cpp.o -c /<>/src/Bpp/Seq/SequenceWithQuality.cpp In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/SequenceWithAnnotation.h:43, from /<>/src/Bpp/Seq/SequenceWithQuality.h:45, from /<>/src/Bpp/Seq/SequenceWithQuality.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/SequenceTools.h:49, from /<>/src/Bpp/Seq/SequenceWithAnnotationTools.h:43, from /<>/src/Bpp/Seq/SequenceWithAnnotationTools.cpp:40: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 87%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithQualityTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithQualityTools.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithQualityTools.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SequenceWithQualityTools.cpp.o -c /<>/src/Bpp/Seq/SequenceWithQualityTools.cpp [ 88%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Site.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Site.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Site.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Site.cpp.o -c /<>/src/Bpp/Seq/Site.cpp In file included from /<>/src/Bpp/Seq/GeneticCode/../Sequence.h:44, from /<>/src/Bpp/Seq/GeneticCode/../Transliterator.h:44, from /<>/src/Bpp/Seq/GeneticCode/GeneticCode.h:43, from /<>/src/Bpp/Seq/SequenceTools.h:49, from /<>/src/Bpp/Seq/SequenceWithQualityTools.h:44, from /<>/src/Bpp/Seq/SequenceWithQualityTools.cpp:41: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/GeneticCode/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Site.h:43, from /<>/src/Bpp/Seq/Site.cpp:41: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 88%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SiteExceptions.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SiteExceptions.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SiteExceptions.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SiteExceptions.cpp.o -c /<>/src/Bpp/Seq/SiteExceptions.cpp [ 89%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SiteTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SiteTools.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SiteTools.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SiteTools.cpp.o -c /<>/src/Bpp/Seq/SiteTools.cpp [ 90%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/StringSequenceTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/StringSequenceTools.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/StringSequenceTools.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/StringSequenceTools.cpp.o -c /<>/src/Bpp/Seq/StringSequenceTools.cpp In file included from /<>/src/Bpp/Seq/Site.h:43, from /<>/src/Bpp/Seq/SiteExceptions.cpp:39: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/SymbolListTools.h:43, from /<>/src/Bpp/Seq/SiteTools.h:44, from /<>/src/Bpp/Seq/SiteTools.cpp:41: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/Alphabet/AlphabetTools.h:47, from /<>/src/Bpp/Seq/StringSequenceTools.cpp:42: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 90%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SymbolList.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SymbolList.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SymbolList.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SymbolList.cpp.o -c /<>/src/Bpp/Seq/SymbolList.cpp In file included from /<>/src/Bpp/Seq/SymbolList.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/map:62, from /<>/src/Bpp/Seq/SymbolListTools.h:48: /usr/include/c++/13/bits/stl_tree.h: In function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/13/bits/stl_tree.h:2210:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2210 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/map:62, from /<>/src/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /<>/src/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /<>/src/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Seq/Alphabet/DNA.h:44, from /<>/src/Bpp/Seq/Alphabet/AlphabetTools.h:43: /usr/include/c++/13/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = char; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/map:63: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::StringSequenceTools::getGCcontent(const std::string&, size_t, size_t)’ at /<>/src/Bpp/Seq/StringSequenceTools.cpp:214:25: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::StringSequenceTools::getGCcontent(const std::string&, size_t, size_t)’ at /<>/src/Bpp/Seq/StringSequenceTools.cpp:216:25: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::StringSequenceTools::getGCcontent(const std::string&, size_t, size_t)’ at /<>/src/Bpp/Seq/StringSequenceTools.cpp:218:25: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::StringSequenceTools::getGCcontent(const std::string&, size_t, size_t)’ at /<>/src/Bpp/Seq/StringSequenceTools.cpp:220:25: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::StringSequenceTools::getGCcontent(const std::string&, size_t, size_t)’ at /<>/src/Bpp/Seq/StringSequenceTools.cpp:222:25: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::StringSequenceTools::getGCcontent(const std::string&, size_t, size_t)’ at /<>/src/Bpp/Seq/StringSequenceTools.cpp:223:17: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::StringSequenceTools::getGCcontent(const std::string&, size_t, size_t)’ at /<>/src/Bpp/Seq/StringSequenceTools.cpp:225:25: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::StringSequenceTools::getGCcontent(const std::string&, size_t, size_t)’ at /<>/src/Bpp/Seq/StringSequenceTools.cpp:226:17: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::StringSequenceTools::getGCcontent(const std::string&, size_t, size_t)’ at /<>/src/Bpp/Seq/StringSequenceTools.cpp:228:25: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::StringSequenceTools::getGCcontent(const std::string&, size_t, size_t)’ at /<>/src/Bpp/Seq/StringSequenceTools.cpp:229:17: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::StringSequenceTools::getGCcontent(const std::string&, size_t, size_t)’ at /<>/src/Bpp/Seq/StringSequenceTools.cpp:231:25: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::StringSequenceTools::getGCcontent(const std::string&, size_t, size_t)’ at /<>/src/Bpp/Seq/StringSequenceTools.cpp:232:17: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::StringSequenceTools::getGCcontent(const std::string&, size_t, size_t)’ at /<>/src/Bpp/Seq/StringSequenceTools.cpp:234:25: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::StringSequenceTools::getGCcontent(const std::string&, size_t, size_t)’ at /<>/src/Bpp/Seq/StringSequenceTools.cpp:235:17: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::StringSequenceTools::getGCcontent(const std::string&, size_t, size_t)’ at /<>/src/Bpp/Seq/StringSequenceTools.cpp:237:25: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::StringSequenceTools::getGCcontent(const std::string&, size_t, size_t)’ at /<>/src/Bpp/Seq/StringSequenceTools.cpp:238:17: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::StringSequenceTools::getGCcontent(const std::string&, size_t, size_t)’ at /<>/src/Bpp/Seq/StringSequenceTools.cpp:240:25: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::StringSequenceTools::getGCcontent(const std::string&, size_t, size_t)’ at /<>/src/Bpp/Seq/StringSequenceTools.cpp:241:17: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::StringSequenceTools::getGCcontent(const std::string&, size_t, size_t)’ at /<>/src/Bpp/Seq/StringSequenceTools.cpp:242:17: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::StringSequenceTools::getGCcontent(const std::string&, size_t, size_t)’ at /<>/src/Bpp/Seq/StringSequenceTools.cpp:244:25: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::StringSequenceTools::getGCcontent(const std::string&, size_t, size_t)’ at /<>/src/Bpp/Seq/StringSequenceTools.cpp:245:17: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::StringSequenceTools::getGCcontent(const std::string&, size_t, size_t)’ at /<>/src/Bpp/Seq/StringSequenceTools.cpp:246:17: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::StringSequenceTools::getGCcontent(const std::string&, size_t, size_t)’ at /<>/src/Bpp/Seq/StringSequenceTools.cpp:248:25: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::StringSequenceTools::getGCcontent(const std::string&, size_t, size_t)’ at /<>/src/Bpp/Seq/StringSequenceTools.cpp:249:17: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/map:63: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::SiteTools::jointEntropy(const bpp::Site&, const bpp::Site&, bool)’ at /<>/src/Bpp/Seq/SiteTools.cpp:286:57: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::StringSequenceTools::getGCcontent(const std::string&, size_t, size_t)’ at /<>/src/Bpp/Seq/StringSequenceTools.cpp:250:17: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::StringSequenceTools::getGCcontent(const std::string&, size_t, size_t)’ at /<>/src/Bpp/Seq/StringSequenceTools.cpp:252:25: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::SiteTools::jointEntropy(const bpp::Site&, const bpp::Site&, bool)’ at /<>/src/Bpp/Seq/SiteTools.cpp:294:57: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::StringSequenceTools::getGCcontent(const std::string&, size_t, size_t)’ at /<>/src/Bpp/Seq/StringSequenceTools.cpp:253:17: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::StringSequenceTools::getGCcontent(const std::string&, size_t, size_t)’ at /<>/src/Bpp/Seq/StringSequenceTools.cpp:254:17: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::StringSequenceTools::getGCcontent(const std::string&, size_t, size_t)’ at /<>/src/Bpp/Seq/StringSequenceTools.cpp:259:24: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::StringSequenceTools::getGCcontent(const std::string&, size_t, size_t)’ at /<>/src/Bpp/Seq/StringSequenceTools.cpp:260:17: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::StringSequenceTools::getGCcontent(const std::string&, size_t, size_t)’ at /<>/src/Bpp/Seq/StringSequenceTools.cpp:261:17: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::StringSequenceTools::getGCcontent(const std::string&, size_t, size_t)’ at /<>/src/Bpp/Seq/StringSequenceTools.cpp:262:17: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::StringSequenceTools::getGCcontent(const std::string&, size_t, size_t)’ at /<>/src/Bpp/Seq/StringSequenceTools.cpp:267:21: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::StringSequenceTools::getGCcontent(const std::string&, size_t, size_t)’ at /<>/src/Bpp/Seq/StringSequenceTools.cpp:267:35: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::SiteTools::mutualInformation(const bpp::Site&, const bpp::Site&, bool)’ at /<>/src/Bpp/Seq/SiteTools.cpp:241:57: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static double bpp::SiteTools::mutualInformation(const bpp::Site&, const bpp::Site&, bool)’ at /<>/src/Bpp/Seq/SiteTools.cpp:259:57: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 91%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SymbolListTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SymbolListTools.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SymbolListTools.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SymbolListTools.cpp.o -c /<>/src/Bpp/Seq/SymbolListTools.cpp In file included from /usr/include/c++/13/vector:72, from /<>/src/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Seq/SymbolList.h:43: /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ [ 91%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Transliterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Transliterator.cpp.o -MF CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Transliterator.cpp.o.d -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Transliterator.cpp.o -c /<>/src/Bpp/Seq/Transliterator.cpp In file included from /usr/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘static std::vector bpp::MapTools::getValues(const std::map&) [with Key = int; T = double]’ at /usr/include/Bpp/Utils/MapTools.h:119:21, inlined from ‘static double bpp::SiteTools::heterozygosity(const bpp::Site&)’ at /<>/src/Bpp/Seq/SiteTools.cpp:326:43: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘static std::vector bpp::MapTools::getValues(const std::map&) [with Key = int; T = double]’ at /usr/include/Bpp/Utils/MapTools.h:119:21, inlined from ‘static double bpp::SiteTools::heterozygosity(const bpp::Site&)’ at /<>/src/Bpp/Seq/SiteTools.cpp:327:67: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/SymbolListTools.h:43, from /<>/src/Bpp/Seq/SymbolListTools.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Seq/Transliterator.h:44, from /<>/src/Bpp/Seq/Transliterator.cpp:40: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/map:62, from /<>/src/Bpp/Seq/SymbolListTools.h:48: /usr/include/c++/13/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/map:63: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static void bpp::SymbolListTools::getCounts(const bpp::SymbolList&, std::map&, bool)’ at /<>/src/Bpp/Seq/SymbolListTools.cpp:56:21: /usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static void bpp::SymbolListTools::getCounts(const bpp::SymbolList&, std::map&, bool)’ at /<>/src/Bpp/Seq/SymbolListTools.cpp:64:64: /usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static void bpp::SymbolListTools::getFrequencies(const bpp::SymbolList&, std::map&, bool)’ at /<>/src/Bpp/Seq/SymbolListTools.cpp:99:25: /usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static void bpp::SymbolListTools::getCounts(const bpp::SymbolList&, const bpp::SymbolList&, std::map >&, bool)’ at /<>/src/Bpp/Seq/SymbolListTools.cpp:75:32: /usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static void bpp::SymbolListTools::getCounts(const bpp::SymbolList&, const bpp::SymbolList&, std::map >&, bool)’ at /<>/src/Bpp/Seq/SymbolListTools.cpp:87:38: /usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘static void bpp::SymbolListTools::getFrequencies(const bpp::SymbolList&, const bpp::SymbolList&, std::map >&, bool)’ at /<>/src/Bpp/Seq/SymbolListTools.cpp:111:35: /usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 92%] Linking CXX shared library libbpp-seq.so cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-seq-shared.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libbpp-seq.so.12 -o libbpp-seq.so.12.0.0 "CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AbstractAlphabet.cpp.o" 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/usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_symlink_library libbpp-seq.so.12.0.0 libbpp-seq.so.12 libbpp-seq.so make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 92%] Built target bpp-seq-shared make -f test/CMakeFiles/test_alignment_scores.dir/build.make test/CMakeFiles/test_alignment_scores.dir/depend make -f test/CMakeFiles/test_alphabets.dir/build.make test/CMakeFiles/test_alphabets.dir/depend make -f test/CMakeFiles/test_bowker.dir/build.make test/CMakeFiles/test_bowker.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/test /<>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_alignment_scores.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/test /<>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_alphabets.dir/DependInfo.cmake "--color=" make -f test/CMakeFiles/test_containers.dir/build.make test/CMakeFiles/test_containers.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/test /<>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_bowker.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f test/CMakeFiles/test_alphabets.dir/build.make test/CMakeFiles/test_alphabets.dir/build cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/test /<>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_containers.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f test/CMakeFiles/test_alignment_scores.dir/build.make test/CMakeFiles/test_alignment_scores.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f test/CMakeFiles/test_bowker.dir/build.make test/CMakeFiles/test_bowker.dir/build [ 93%] Building CXX object test/CMakeFiles/test_alphabets.dir/test_alphabets.cpp.o make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -MD -MT test/CMakeFiles/test_alphabets.dir/test_alphabets.cpp.o -MF CMakeFiles/test_alphabets.dir/test_alphabets.cpp.o.d -o CMakeFiles/test_alphabets.dir/test_alphabets.cpp.o -c /<>/test/test_alphabets.cpp make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f test/CMakeFiles/test_containers.dir/build.make test/CMakeFiles/test_containers.dir/build [ 93%] Building CXX object test/CMakeFiles/test_alignment_scores.dir/test_alignment_scores.cpp.o cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -MD -MT test/CMakeFiles/test_alignment_scores.dir/test_alignment_scores.cpp.o -MF CMakeFiles/test_alignment_scores.dir/test_alignment_scores.cpp.o.d -o CMakeFiles/test_alignment_scores.dir/test_alignment_scores.cpp.o -c /<>/test/test_alignment_scores.cpp make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 94%] Building CXX object test/CMakeFiles/test_bowker.dir/test_bowker.cpp.o cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -MD -MT test/CMakeFiles/test_bowker.dir/test_bowker.cpp.o -MF CMakeFiles/test_bowker.dir/test_bowker.cpp.o.d -o CMakeFiles/test_bowker.dir/test_bowker.cpp.o -c /<>/test/test_bowker.cpp [ 95%] Building CXX object test/CMakeFiles/test_containers.dir/test_containers.cpp.o cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -MD -MT test/CMakeFiles/test_containers.dir/test_containers.cpp.o -MF CMakeFiles/test_containers.dir/test_containers.cpp.o.d -o CMakeFiles/test_containers.dir/test_containers.cpp.o -c /<>/test/test_containers.cpp In file included from /<>/src/Bpp/Seq/Container/../Site.h:43, from /<>/src/Bpp/Seq/Container/VectorSiteContainer.h:43, from /<>/test/test_alignment_scores.cpp:41: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/Alphabet/CodonAlphabet.h:44, from /<>/test/test_alphabets.cpp:44: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Container/../Site.h:43, from /<>/src/Bpp/Seq/Container/VectorSiteContainer.h:43, from /<>/test/test_containers.cpp:41: /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Container/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Container/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Container/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/Alphabet/AlphabetTools.h:47, from /<>/test/test_bowker.cpp:41: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 95%] Linking CXX executable test_alphabets cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_alphabets.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_alphabets.dir/test_alphabets.cpp.o -o test_alphabets -Wl,-rpath,/<>/obj-arm-linux-gnueabihf/src ../src/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 [ 95%] Linking CXX executable test_containers cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_containers.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_containers.dir/test_containers.cpp.o -o test_containers -Wl,-rpath,/<>/obj-arm-linux-gnueabihf/src ../src/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 95%] Built target test_alphabets make -f test/CMakeFiles/test_io.dir/build.make test/CMakeFiles/test_io.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/test /<>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_io.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f test/CMakeFiles/test_io.dir/build.make test/CMakeFiles/test_io.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 96%] Building CXX object test/CMakeFiles/test_io.dir/test_io.cpp.o cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -MD -MT test/CMakeFiles/test_io.dir/test_io.cpp.o -MF CMakeFiles/test_io.dir/test_io.cpp.o.d -o CMakeFiles/test_io.dir/test_io.cpp.o -c /<>/test/test_io.cpp [ 96%] Linking CXX executable test_bowker cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_bowker.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_bowker.dir/test_bowker.cpp.o -o test_bowker -Wl,-rpath,/<>/obj-arm-linux-gnueabihf/src ../src/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 96%] Built target test_containers make -f test/CMakeFiles/test_sequences.dir/build.make test/CMakeFiles/test_sequences.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/test /<>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_sequences.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f test/CMakeFiles/test_sequences.dir/build.make test/CMakeFiles/test_sequences.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 97%] Building CXX object test/CMakeFiles/test_sequences.dir/test_sequences.cpp.o cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -MD -MT test/CMakeFiles/test_sequences.dir/test_sequences.cpp.o -MF CMakeFiles/test_sequences.dir/test_sequences.cpp.o.d -o CMakeFiles/test_sequences.dir/test_sequences.cpp.o -c /<>/test/test_sequences.cpp make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 97%] Built target test_bowker make -f test/CMakeFiles/test_walker.dir/build.make test/CMakeFiles/test_walker.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/test /<>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_walker.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f test/CMakeFiles/test_walker.dir/build.make test/CMakeFiles/test_walker.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 98%] Building CXX object test/CMakeFiles/test_walker.dir/test_walker.cpp.o cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -MD -MT test/CMakeFiles/test_walker.dir/test_walker.cpp.o -MF CMakeFiles/test_walker.dir/test_walker.cpp.o.d -o CMakeFiles/test_walker.dir/test_walker.cpp.o -c /<>/test/test_walker.cpp In file included from /<>/src/Bpp/Seq/Io/../Sequence.h:44, from /<>/src/Bpp/Seq/Io/ISequence.h:46, from /<>/src/Bpp/Seq/Io/AbstractISequence.h:43, from /<>/src/Bpp/Seq/Io/Fasta.h:45, from /<>/test/test_io.cpp:41: /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Io/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Io/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Io/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /<>/src/Bpp/Seq/Alphabet/../Sequence.h:44, from /<>/src/Bpp/Seq/Alphabet/WordAlphabet.h:49, from /<>/src/Bpp/Seq/Alphabet/CodonAlphabet.h:44, from /<>/src/Bpp/Seq/Alphabet/AlphabetTools.h:47, from /<>/test/test_sequences.cpp:41: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/Alphabet/../SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/Alphabet/../SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 99%] Linking CXX executable test_alignment_scores cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_alignment_scores.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_alignment_scores.dir/test_alignment_scores.cpp.o -o test_alignment_scores -Wl,-rpath,/<>/obj-arm-linux-gnueabihf/src ../src/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 99%] Built target test_alignment_scores In file included from /<>/src/Bpp/Seq/Sequence.h:44, from /<>/test/test_walker.cpp:42: /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::BasicSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:370:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 370 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /<>/src/Bpp/Seq/SymbolList.h:49: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /<>/src/Bpp/Seq/SymbolList.h: In member function ‘virtual void bpp::EdSymbolList::shuffle()’: /<>/src/Bpp/Seq/SymbolList.h:614:21: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 614 | random_shuffle(content_.begin(), content_.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 99%] Linking CXX executable test_sequences cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sequences.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_sequences.dir/test_sequences.cpp.o -o test_sequences -Wl,-rpath,/<>/obj-arm-linux-gnueabihf/src ../src/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 [100%] Linking CXX executable test_walker cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_walker.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_walker.dir/test_walker.cpp.o -o test_walker -Wl,-rpath,/<>/obj-arm-linux-gnueabihf/src ../src/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [100%] Built target test_sequences make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [100%] Built target test_walker [100%] Linking CXX executable test_io cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_io.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/libbpp-seq-2.4.1-10 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_io.dir/test_io.cpp.o -o test_io -Wl,-rpath,/<>/obj-arm-linux-gnueabihf/src ../src/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [100%] Built target test_io make[2]: Leaving directory '/<>/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_start /<>/obj-arm-linux-gnueabihf/CMakeFiles 0 make[1]: Leaving directory '/<>/obj-arm-linux-gnueabihf' dh_auto_test -a cd obj-arm-linux-gnueabihf && make -j4 test ARGS\+=--verbose ARGS\+=-j4 make[1]: Entering directory '/<>/obj-arm-linux-gnueabihf' Running tests... /usr/bin/ctest --force-new-ctest-process --verbose -j4 UpdateCTestConfiguration from :/<>/obj-arm-linux-gnueabihf/DartConfiguration.tcl Parse Config file:/<>/obj-arm-linux-gnueabihf/DartConfiguration.tcl UpdateCTestConfiguration from :/<>/obj-arm-linux-gnueabihf/DartConfiguration.tcl Parse Config file:/<>/obj-arm-linux-gnueabihf/DartConfiguration.tcl Test project /<>/obj-arm-linux-gnueabihf Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 1 Start 1: test_alignment_scores 1: Test command: /<>/obj-arm-linux-gnueabihf/test/test_alignment_scores 1: Working Directory: /<>/test 1: Test timeout computed to be: 60000 test 2 Start 2: test_alphabets 2: Test command: /<>/obj-arm-linux-gnueabihf/test/test_alphabets 2: Working Directory: /<>/test 2: Test timeout computed to be: 60000 test 3 Start 3: test_bowker 3: Test command: /<>/obj-arm-linux-gnueabihf/test/test_bowker 3: Working Directory: /<>/test 3: Test timeout computed to be: 60000 test 4 Start 4: test_containers 4: Test command: /<>/obj-arm-linux-gnueabihf/test/test_containers 4: Working Directory: /<>/test 4: Test timeout computed to be: 60000 1: 0 0 0 1 1 1 1 1 1 1 0 0 0 1 1 1 1 0 0 0 0 1 1 1 0 0 0 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1: 0 0 0 1 1 1 1 1 1 1 0 0 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 1 1 0 1 1 1 1 1 1 1 0 1 0 1 1 1 1 0 0 1: 0 0 0 1 1 1 1 1 1 1 1 1 1 1 0 0 0 1 1 1 0 1 1 1 1 1 1 1 0 1 0 1 1 1 1 1: 0.000000 0.000000 0.000000 1.000000 1.000000 1.000000 1.000000 1.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.333333 0.333333 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 1.000000 1.000000 1.000000 1.000000 1.000000 1.000000 1.000000 0.333333 0.000000 0.000000 1.000000 1.000000 1.000000 1.000000 0.000000 0.000000 1: 0.000000 0.000000 0.000000 1.000000 1.000000 1.000000 1.000000 1.000000 1.000000 1.000000 1.000000 0.000000 1.000000 1.000000 1.000000 0.000000 1.000000 1.000000 1.000000 1.000000 0.000000 1.000000 1.000000 1.000000 1.000000 1.000000 1.000000 1.000000 0.000000 0.000000 0.333333 1.000000 1.000000 1.000000 1.000000 1/7 Test #1: test_alignment_scores ............ Passed 0.02 sec test 5 Start 5: test_io 5: Test command: /<>/obj-arm-linux-gnueabihf/test/test_io 5: Working Directory: /<>/test 5: Test timeout computed to be: 60000 2/7 Test #2: test_alphabets ................... Passed 0.02 sec test 6 Start 6: test_sequences 6: Test command: /<>/obj-arm-linux-gnueabihf/test/test_sequences 6: Working Directory: /<>/test 6: Test timeout computed to be: 60000 3: 2 0.919699 4: 47 4: ----AUGCCG---GCGU----UUU----G--G-CCGACGUGUUUU-- 4: ---GAAGGCG---G-GU----UUU----GC-GACCGACG--UUUU-- 4: [>>> ] 8% [>>>> ] 12% [>>>>>> ] 17% [>>>>>>>> ] 21% [>>>>>>>>> ] 25% [>>>>>>>>>>> ] 29% [>>>>>>>>>>>> ] 34% [>>>>>>>>>>>>>> ] 38% [>>>>>>>>>>>>>>>> ] 42% [>>>>>>>>>>>>>>>>>>> ] 51% [>>>>>>>>>>>>>>>>>>>>> ] 55% [>>>>>>>>>>>>>>>>>>>>>>>>> ] 68% [>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 72% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 80% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 85% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 89% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 93% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>] 100% 4: 30 4: -AUGCCGGCGUUUUG-G-CCGACGUGUUUU 4: GAAGGCGG-GUUUUGCGACCGACG--UUUU 3/7 Test #4: test_containers .................. Passed 0.02 sec test 7 Start 7: test_walker 7: Test command: /<>/obj-arm-linux-gnueabihf/test/test_walker 7: Working Directory: /<>/test 7: Test timeout computed to be: 60000 6: --- Strict match --- 6: ATTT: 0 6: TCG: 3 6: GATC: 29 6: CGTC: 33 6: CWCAT: 19 6: --- Degenerated match --- 6: CTCAT: 19 6: AAGCA: 16 4/7 Test #6: test_sequences ................... Passed 0.02 sec 5: example.fasta contains 100 sequences 7: 0 A 4 7: 1 U 5 7: 2 G 6 7: 3 C 7 7: 4 C 8 7: 5 G 9 7: 6 G 13 7: 7 C 14 7: 8 G 15 7: 9 U 16 7: 10 U 21 7: 11 U 22 7: 12 U 23 7: 13 G 28 7: 14 G 31 7: 15 C 33 7: 16 C 34 7: 17 G 35 7: 18 A 36 7: 19 C 37 7: 20 G 38 7: 21 U 39 7: 22 G 40 7: 23 U 41 7: 24 U 42 7: 25 U 43 7: 26 U 44 7: 7: 0 7: 4 7: 26 7: 44 7: [ ] 0% [= ] 2% [== ] 5% [=== ] 8% [==== ] 10% [===== ] 13% [====== ] 16% [======= ] 18% [======== ] 21% [========= ] 24% [========== ] 27% [=========== ] 29% [============ ] 32% [============= ] 35% [============== ] 37% [=============== ] 40% [================ ] 43% [================= ] 45% [================== ] 48% [=================== ] 51% [==================== ] 54% [===================== ] 56% [====================== ] 59% [======================= ] 62% [======================== ] 64% [========================= ] 67% [========================== ] 70% [=========================== ] 72% [============================ ] 75% [============================= ] 78% [============================== ] 81% [=============================== ] 83% [================================ ] 86% [================================= ] 89% [================================== ] 91% [=================================== ] 94% [==================================== ] 97% [======================================] 100% 7: 0 7: 4 7: 26 7: 44 7: [ ] 0% [= ] 2% [== ] 5% [=== ] 8% [==== ] 10% [===== ] 13% [====== ] 16% [======= ] 18% [======== ] 21% [========= ] 24% [========== ] 27% [=========== ] 29% [============ ] 32% [============= ] 35% [============== ] 37% [=============== ] 40% [================ ] 43% [================= ] 45% [================== ] 48% [=================== ] 51% [==================== ] 54% [===================== ] 56% [====================== ] 59% [======================= ] 62% [======================== ] 64% [========================= ] 67% [========================== ] 70% [=========================== ] 72% [============================ ] 75% [============================= ] 78% [============================== ] 81% [=============================== ] 83% [================================ ] 86% [================================= ] 89% [================================== ] 91% [=================================== ] 94% [==================================== ] 97% [======================================] 100% 7: 0 7: 4 7: 26 7: 44 7: [ ] 0% [= ] 2% [== ] 5% [=== ] 8% [==== ] 10% [===== ] 13% [====== ] 16% [======= ] 18% [======== ] 21% [========= ] 24% [========== ] 27% [=========== ] 29% [============ ] 32% [============= ] 35% [============== ] 37% [=============== ] 40% [================ ] 43% [================= ] 45% [================== ] 48% [=================== ] 51% [==================== ] 54% [===================== ] 56% [====================== ] 59% [======================= ] 62% [======================== ] 64% [========================= ] 67% [========================== ] 70% [=========================== ] 72% [============================ ] 75% [============================= ] 78% [============================== ] 81% [=============================== ] 83% [================================ ] 86% [================================= ] 89% [================================== ] 91% [=================================== ] 94% [==================================== ] 97% [======================================] 100% 7: _________________________________________________ 7: 0 - 0 7: 1 - 0 7: 2 - 0 7: 3 - 0 7: 4 A 0 7: 5 U 1 7: 6 G 2 7: 7 C 3 7: 8 C 4 7: 9 G 5 7: 10 - 5 7: 11 - 5 7: 12 - 5 7: 13 G 6 7: 14 C 7 7: 15 G 8 7: 16 U 9 7: 17 - 9 7: 18 - 9 7: 19 - 9 7: 20 - 9 7: 21 U 10 7: 22 U 11 7: 23 U 12 7: 24 - 12 7: 25 - 12 7: 26 - 12 7: 27 - 12 7: 28 G 13 7: 29 - 13 7: 30 - 13 7: 31 G 14 7: 32 - 14 7: 33 C 15 7: 34 C 16 7: 35 G 17 7: 36 A 18 7: 37 C 19 7: 38 G 20 7: 39 U 21 7: 40 G 22 7: 41 U 23 7: 42 U 24 7: 43 U 25 7: 44 U 26 7: 45 - 26 7: 46 - 26 7: 7: 0 7: 0 7: 46 7: 26 7: [ ] 0% [= ] 2% [== ] 5% [=== ] 8% [==== ] 10% [===== ] 13% [====== ] 16% [======= ] 18% [======== ] 21% [========= ] 24% [========== ] 27% [=========== ] 29% [============ ] 32% [============= ] 35% [============== ] 37% [=============== ] 40% [================ ] 43% [================= ] 45% [================== ] 48% [=================== ] 51% [==================== ] 54% [===================== ] 56% [====================== ] 59% [======================= ] 62% [======================== ] 64% [========================= ] 67% [========================== ] 70% [=========================== ] 72% [============================ ] 75% [============================= ] 78% [============================== ] 81% [=============================== ] 83% [================================ ] 86% [================================= ] 89% [================================== ] 91% [=================================== ] 94% [==================================== ] 97% [======================================] 100% 7: 0 7: 0 7: 46 7: 26 7: [ ] 0% [= ] 2% [== ] 5% [=== ] 8% [==== ] 10% [===== ] 13% [====== ] 16% [======= ] 18% [======== ] 21% [========= ] 24% [========== ] 27% [=========== ] 29% [============ ] 32% [============= ] 35% [============== ] 37% [=============== ] 40% [================ ] 43% [================= ] 45% [================== ] 48% [=================== ] 51% [==================== ] 54% [===================== ] 56% [====================== ] 59% [======================= ] 62% [======================== ] 64% [========================= ] 67% [========================== ] 70% [=========================== ] 72% [============================ ] 75% [============================= ] 78% [============================== ] 81% [=============================== ] 83% [================================ ] 86% [================================= ] 89% [================================== ] 91% [=================================== ] 94% [==================================== ] 97% [======================================] 100% 7: 0 7: 0 7: 46 7: 26 7: [ ] 0% [= ] 2% [== ] 5% [=== ] 8% [==== ] 10% [===== ] 13% [====== ] 16% [======= ] 18% [======== ] 21% [========= ] 24% [========== ] 27% [=========== ] 29% [============ ] 32% [============= ] 35% [============== ] 37% [=============== ] 40% [================ ] 43% [================= ] 45% [================== ] 48% [=================== ] 51% [==================== ] 54% [===================== ] 56% [====================== ] 59% [======================= ] 62% [======================== ] 64% [========================= ] 67% [========================== ] 70% [=========================== ] 72% [============================ ] 75% [============================= ] 78% [============================== ] 81% [=============================== ] 83% [================================ ] 86% [================================= ] 89% [================================== ] 91% [=================================== ] 94% [==================================== ] 97% [======================================] 100% 5/7 Test #7: test_walker ...................... Passed 0.03 sec 5: 100 1209 5: 100 1209 5: 100 1209 5: 100 1209 5: 100 1209 6/7 Test #5: test_io .......................... Passed 0.10 sec 3: [ ] 0% [> ] 2% [>> ] 5% [>>> ] 7% [>>>> ] 10% [>>>>> ] 13% [>>>>>> ] 15% [>>>>>>> ] 18% [>>>>>>>> ] 21% [>>>>>>>>> ] 23% [>>>>>>>>>> ] 26% [>>>>>>>>>>> ] 29% [>>>>>>>>>>>> ] 31% [>>>>>>>>>>>>> ] 34% [>>>>>>>>>>>>>> ] 36% [>>>>>>>>>>>>>>> ] 39% [>>>>>>>>>>>>>>>> ] 42% [>>>>>>>>>>>>>>>>> ] 44% [>>>>>>>>>>>>>>>>>> ] 47% [>>>>>>>>>>>>>>>>>>> ] 50% [>>>>>>>>>>>>>>>>>>>> ] 52% [>>>>>>>>>>>>>>>>>>>>> ] 55% [>>>>>>>>>>>>>>>>>>>>>> ] 58% [>>>>>>>>>>>>>>>>>>>>>>> ] 60% [>>>>>>>>>>>>>>>>>>>>>>>> ] 63% [>>>>>>>>>>>>>>>>>>>>>>>>> ] 66% [>>>>>>>>>>>>>>>>>>>>>>>>>> ] 68% [>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 71% [>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 73% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 76% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 79% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 81% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 84% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 87% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 89% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 92% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 95% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 97% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>] 100%0.0086 0.046 0.0972 0.5088 3: [ ] 0% [> ] 2% [>> ] 5% [>>> ] 7% [>>>> ] 10% [>>>>> ] 13% [>>>>>> ] 15% [>>>>>>> ] 18% [>>>>>>>> ] 21% [>>>>>>>>> ] 23% [>>>>>>>>>> ] 26% [>>>>>>>>>>> ] 29% [>>>>>>>>>>>> ] 31% [>>>>>>>>>>>>> ] 34% [>>>>>>>>>>>>>> ] 36% [>>>>>>>>>>>>>>> ] 39% [>>>>>>>>>>>>>>>> ] 42% [>>>>>>>>>>>>>>>>> ] 44% [>>>>>>>>>>>>>>>>>> ] 47% [>>>>>>>>>>>>>>>>>>> ] 50% [>>>>>>>>>>>>>>>>>>>> ] 52% [>>>>>>>>>>>>>>>>>>>>> ] 55% [>>>>>>>>>>>>>>>>>>>>>> ] 58% [>>>>>>>>>>>>>>>>>>>>>>> ] 60% [>>>>>>>>>>>>>>>>>>>>>>>> ] 63% [>>>>>>>>>>>>>>>>>>>>>>>>> ] 66% [>>>>>>>>>>>>>>>>>>>>>>>>>> ] 68% [>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 71% [>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 73% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 76% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 79% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 81% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 84% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 87% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 89% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 92% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 95% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ] 97% [>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>] 100%0.009 0.0502 0.1022 0.5014 7/7 Test #3: test_bowker ...................... Passed 43.19 sec 100% tests passed, 0 tests failed out of 7 Total Test time (real) = 43.20 sec make[1]: Leaving directory '/<>/obj-arm-linux-gnueabihf' create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install -a cd obj-arm-linux-gnueabihf && make -j4 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/<> -B/<>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/obj-arm-linux-gnueabihf' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/obj-arm-linux-gnueabihf' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/bpp-seq/bpp-seq-config.cmake -- Installing: /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/bpp-seq/bpp-seq-config-version.cmake -- Installing: /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-seq.a -- Installing: /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 -- Installing: /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12 -- Installing: /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-seq.so -- Installing: /<>/debian/tmp/usr/include/Bpp -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/SequenceWithQuality.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/SiteIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/SequencePositionIterators.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/App -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/App/SequenceApplicationTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/CoreSite.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/SequenceExceptions.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/SequenceWithQualityTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/SequenceIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Transliterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/CodonSiteTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/SequenceWithAnnotationTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/SequenceTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/GeneticCode -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/GeneticCode/GeneticCode.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/GeneticCode/StandardGeneticCode.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Sequence.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/SiteTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Site.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/StringSequenceTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/SequenceWithAnnotation.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/DNAToRNA.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/SymbolListTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/SymbolList.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/DistanceMatrix.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/SequenceFileIndex.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/GenBank.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/AbstractOSequence.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/BppOAlphabetIndex1Format.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Fasta.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/AbstractISequence.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Phylip.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/NexusTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/PhredPhd.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/StreamSequenceIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/BppOAlignmentWriterFormat.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/IoSequenceFactory.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/OSequence.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/AbstractOAlignment.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/MaseTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/IoSequence.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/NexusIoSequence.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/BppOSequenceReaderFormat.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/AbstractIAlignment.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/BppOAlphabetIndex2Format.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Stockholm.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/ISequenceStream.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/BppOSequenceWriterFormat.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/ISequence.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Mase.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/BppOAlignmentReaderFormat.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/PhredPoly.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Dcse.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/OSequenceStream.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/IoSequenceStream.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Clustal.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AAMassIndex.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AASEA1030Index.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/UserAlphabetIndex1.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AASEAInf10Index.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/KleinAANetChargeIndex.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AAIndex1Entry.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/BLOSUM50.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AASEASup30Index.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AAChouFasmanAHelixIndex.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AAChenGuHuangHydrophobicityIndex.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/GranthamAAVolumeIndex.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AAChouFasmanTurnIndex.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/SimpleScore.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AAIndex2Entry.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/GranthamAAPolarityIndex.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AASurfaceIndex.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/SimpleIndexDistance.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AAChargeIndex.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AAVolumeIndex.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/AlphabetIndex/AAChouFasmanBSheetIndex.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/RNA.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/LexicalAlphabet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/WordAlphabet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/IntegerAlphabet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/AlphabetNumericState.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/AlphabetTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/DNA.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/Alphabet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/NucleicAlphabetState.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/CodonAlphabet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/CaseMaskedAlphabet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/BinaryAlphabet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/NumericAlphabet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/AlphabetState.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/ProteicAlphabetState.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/DefaultAlphabet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/RNY.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Alphabet/AlphabetExceptions.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/CoreSequence.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/SiteExceptions.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/SequenceWalker.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Container -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Container/SiteContainerTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Container/SequenceContainerExceptions.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Container/SiteContainer.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Container/SiteContainerIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Container/OrderedSequenceContainer.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Container/VectorSiteContainer.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Container/VectorSequenceContainer.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Container/SequenceContainerTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Container/AlignedSequenceContainer.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Container/SequenceContainerIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Container/AbstractSequenceContainer.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Container/SequenceContainer.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Container/SiteContainerExceptions.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Container/MapSequenceContainer.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Container/CompressedVectorSiteContainer.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/NucleicAcidsReplication.h -- Installing: /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/bpp-seq/bpp-seq-targets.cmake -- Installing: /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/bpp-seq/bpp-seq-targets-none.cmake make[1]: Leaving directory '/<>/obj-arm-linux-gnueabihf' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ --movedev debian/tmp/usr/lib/*/cmake usr/lib/arm-linux-gnueabihf \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility --> libbpp-core-dev package exists. set -e install -d -m 755 debian/libbpp-seq-dev/usr/lib/arm-linux-gnueabihf install -d -m 755 debian/libbpp-seq12/usr/lib/arm-linux-gnueabihf mv debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-seq.a debian/libbpp-seq-dev/usr/lib/arm-linux-gnueabihf mv debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-seq.so debian/libbpp-seq-dev/usr/lib/arm-linux-gnueabihf mv /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12 debian/libbpp-seq12/usr/lib/arm-linux-gnueabihf mv /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 debian/libbpp-seq12/usr/lib/arm-linux-gnueabihf PKGDEV=libbpp-seq-dev PKGSHL=libbpp-seq12 install -d -m 755 debian/libbpp-seq-dev/usr/include mv debian/tmp/usr/include/Bpp debian/libbpp-seq-dev/usr/include install -d -m 755 debian/libbpp-seq-dev/usr/lib/arm-linux-gnueabihf mv debian/tmp/usr/lib/arm-linux-gnueabihf/cmake debian/libbpp-seq-dev/usr/lib/arm-linux-gnueabihf make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a 2b043dcee36c0921ff46d64b0e548407c711b0b9 dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libbpp-seq12/usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 found in none of the libraries dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 153 INFO: pkgstriptranslations version 153 INFO: pkgstriptranslations version 153 pkgstriptranslations: processing libbpp-seq-dev (in debian/libbpp-seq-dev); do_strip: , oemstrip: pkgstriptranslations: processing libbpp-seq12 (in debian/libbpp-seq12); do_strip: , oemstrip: pkgstriptranslations: processing libbpp-seq12-dbgsym (in debian/.debhelper/libbpp-seq12/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libbpp-seq-dev/DEBIAN/control, package libbpp-seq-dev, directory debian/libbpp-seq-dev Searching for duplicated docs in dependency libbpp-seq12... pkgstripfiles: processing control file: debian/.debhelper/libbpp-seq12/dbgsym-root/DEBIAN/control, package libbpp-seq12-dbgsym, directory debian/.debhelper/libbpp-seq12/dbgsym-root dpkg-deb: building package 'libbpp-seq12-dbgsym' in 'debian/.debhelper/scratch-space/build-libbpp-seq12/libbpp-seq12-dbgsym_2.4.1-10_armhf.deb'. symlinking changelog.Debian.gz in libbpp-seq-dev to file in libbpp-seq12 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libbpp-seq-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libbpp-seq-dev' in '../libbpp-seq-dev_2.4.1-10_armhf.deb'. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libbpp-seq12/DEBIAN/control, package libbpp-seq12, directory debian/libbpp-seq12 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libbpp-seq12 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libbpp-seq12' in '../libbpp-seq12_2.4.1-10_armhf.deb'. Renaming libbpp-seq12-dbgsym_2.4.1-10_armhf.deb to libbpp-seq12-dbgsym_2.4.1-10_armhf.ddeb dpkg-genbuildinfo --build=any -O../libbpp-seq_2.4.1-10_armhf.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../libbpp-seq_2.4.1-10_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2023-08-13T17:22:52Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libbpp-seq_2.4.1-10_armhf.changes: ---------------------------------- Format: 1.8 Date: Sun, 13 Aug 2023 13:21:18 +0200 Source: libbpp-seq Binary: libbpp-seq-dev libbpp-seq12 Built-For-Profiles: noudeb Architecture: armhf Version: 2.4.1-10 Distribution: mantic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Michael R. Crusoe Description: libbpp-seq-dev - Bio++ Sequence library development files libbpp-seq12 - Bio++ Sequence library Closes: 1037721 1042204 Changes: libbpp-seq (2.4.1-10) unstable; urgency=medium . * Team upload. * Standards-Version: 4.6.2 (routine-update) * Update symbols for gcc-13. Closes: #1037721, #1042204 * d/patches/spelling: fix a typo * d/control: Use ${devlibs:Depends} for the -dev package. Checksums-Sha1: f6469153e4126bfb89724e71ddf4b590cefdea26 830466 libbpp-seq-dev_2.4.1-10_armhf.deb d1af49dafe0042974cedb380fc25e082094a59aa 9236820 libbpp-seq12-dbgsym_2.4.1-10_armhf.ddeb 2e9bfdb052c31b6b392e912b8fad91263fb5923b 485516 libbpp-seq12_2.4.1-10_armhf.deb 14c7335c07719164c9749ed6ee98c9791b712f6d 7009 libbpp-seq_2.4.1-10_armhf.buildinfo Checksums-Sha256: 72b9fe0c17904b02c4c0893208fcd2841875c8359c85b0f83e1597b6f4ac6e44 830466 libbpp-seq-dev_2.4.1-10_armhf.deb a977ff959b940779947eada950519324146a7cf9cfab58563e4b22ed37768d81 9236820 libbpp-seq12-dbgsym_2.4.1-10_armhf.ddeb 4ce6e555d11afb7c71140001169d6098fe6fc031d757f6029bc552490ff6c48e 485516 libbpp-seq12_2.4.1-10_armhf.deb 25afc4ac5f766b83f8ab8e9c63f76893e22987e0c71c19191fa56a3c7b13c72e 7009 libbpp-seq_2.4.1-10_armhf.buildinfo Files: 8ec824804ebea5b3b7a139dc2cb3be61 830466 libdevel optional libbpp-seq-dev_2.4.1-10_armhf.deb 3c91e994dc56c1475c2ccc0c06f605d7 9236820 debug optional libbpp-seq12-dbgsym_2.4.1-10_armhf.ddeb 73f1dd16e9a647c8bacb0f36cbd5654f 485516 libs optional libbpp-seq12_2.4.1-10_armhf.deb ceb469f89598ee997d80c665b8f927e4 7009 science optional libbpp-seq_2.4.1-10_armhf.buildinfo /<>/libbpp-seq_2.4.1-10_armhf.changes.new could not be renamed to /<>/libbpp-seq_2.4.1-10_armhf.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: libbpp-seq Binary: libbpp-seq-dev libbpp-seq12 libbpp-seq12-dbgsym Architecture: armhf Version: 2.4.1-10 Checksums-Md5: 8ec824804ebea5b3b7a139dc2cb3be61 830466 libbpp-seq-dev_2.4.1-10_armhf.deb 3c91e994dc56c1475c2ccc0c06f605d7 9236820 libbpp-seq12-dbgsym_2.4.1-10_armhf.ddeb 73f1dd16e9a647c8bacb0f36cbd5654f 485516 libbpp-seq12_2.4.1-10_armhf.deb Checksums-Sha1: f6469153e4126bfb89724e71ddf4b590cefdea26 830466 libbpp-seq-dev_2.4.1-10_armhf.deb d1af49dafe0042974cedb380fc25e082094a59aa 9236820 libbpp-seq12-dbgsym_2.4.1-10_armhf.ddeb 2e9bfdb052c31b6b392e912b8fad91263fb5923b 485516 libbpp-seq12_2.4.1-10_armhf.deb Checksums-Sha256: 72b9fe0c17904b02c4c0893208fcd2841875c8359c85b0f83e1597b6f4ac6e44 830466 libbpp-seq-dev_2.4.1-10_armhf.deb a977ff959b940779947eada950519324146a7cf9cfab58563e4b22ed37768d81 9236820 libbpp-seq12-dbgsym_2.4.1-10_armhf.ddeb 4ce6e555d11afb7c71140001169d6098fe6fc031d757f6029bc552490ff6c48e 485516 libbpp-seq12_2.4.1-10_armhf.deb Build-Origin: Ubuntu Build-Architecture: armhf Build-Date: Sun, 13 Aug 2023 17:22:51 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: adduser (= 3.137ubuntu1), apt (= 2.7.3), autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-13), autotools-dev (= 20220109.1), base-files (= 13ubuntu1), base-passwd (= 3.6.1), bash (= 5.2.15-2ubuntu1), binutils (= 2.41-4ubuntu1), binutils-arm-linux-gnueabihf (= 2.41-4ubuntu1), binutils-common (= 2.41-4ubuntu1), bsdextrautils (= 2.38.1-5ubuntu2), bsdutils (= 1:2.38.1-5ubuntu2), build-essential (= 12.10ubuntu1), bzip2 (= 1.0.8-5build1), cmake (= 3.27.2-1), cmake-data (= 3.27.2-1), coreutils (= 9.1-1ubuntu2), cpp (= 4:13.2.0-1ubuntu1), cpp-12 (= 12.3.0-7ubuntu2), cpp-13 (= 13.2.0-2ubuntu1), d-shlibs (= 0.104), dash (= 0.5.12-6ubuntu1), debconf (= 1.5.82), debhelper (= 13.11.4ubuntu3), debianutils (= 5.8-1), debugedit (= 1:5.0-5), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.8-4), dpkg (= 1.21.22ubuntu1), dpkg-dev (= 1.21.22ubuntu1), dwz (= 0.15-1), file (= 1:5.44-3), findutils (= 4.9.0-5), g++ (= 4:13.2.0-1ubuntu1), g++-13 (= 13.2.0-2ubuntu1), gcc (= 4:13.2.0-1ubuntu1), gcc-12 (= 12.3.0-7ubuntu2), gcc-12-base (= 12.3.0-7ubuntu2), gcc-13 (= 13.2.0-2ubuntu1), gcc-13-base (= 13.2.0-2ubuntu1), gettext (= 0.21-13), gettext-base (= 0.21-13), gpgv (= 2.2.40-1.1ubuntu1), grep (= 3.11-2), groff-base (= 1.23.0-2), gzip (= 1.12-1ubuntu1), hostname (= 3.23+nmu1ubuntu1), init-system-helpers (= 1.65.2ubuntu1), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.1-3), libapt-pkg6.0 (= 2.7.3), libarchive-zip-perl (= 1.68-1), libarchive13 (= 3.6.2-1ubuntu1), libasan8 (= 13.2.0-2ubuntu1), libatomic1 (= 13.2.0-2ubuntu1), libattr1 (= 1:2.5.1-4), libaudit-common (= 1:3.1.1-1), libaudit1 (= 1:3.1.1-1), libbinutils (= 2.41-4ubuntu1), libblkid1 (= 2.38.1-5ubuntu2), libbpp-core-dev (= 2.4.1-10), libbpp-core4 (= 2.4.1-10), libbrotli1 (= 1.0.9-2build8), libbz2-1.0 (= 1.0.8-5build1), libc-bin (= 2.38-1ubuntu3), libc-dev-bin (= 2.38-1ubuntu3), libc6 (= 2.38-1ubuntu3), libc6-dev (= 2.38-1ubuntu3), libcap-ng0 (= 0.8.3-1build2), libcap2 (= 1:2.66-4ubuntu1), libcc1-0 (= 13.2.0-2ubuntu1), libcom-err2 (= 1.47.0-2ubuntu1), libcrypt-dev (= 1:4.4.36-2), libcrypt1 (= 1:4.4.36-2), libctf-nobfd0 (= 2.41-4ubuntu1), libctf0 (= 2.41-4ubuntu1), libcurl4 (= 8.2.1-1ubuntu2), libdb5.3 (= 5.3.28+dfsg2-2), libdebconfclient0 (= 0.270ubuntu1), libdebhelper-perl (= 13.11.4ubuntu3), libdpkg-perl (= 1.21.22ubuntu1), libdw1 (= 0.189-4), libelf1 (= 0.189-4), libexpat1 (= 2.5.0-2), libffi8 (= 3.4.4-1), libfile-stripnondeterminism-perl (= 1.13.1-1), libgcc-12-dev (= 12.3.0-7ubuntu2), libgcc-13-dev (= 13.2.0-2ubuntu1), libgcc-s1 (= 13.2.0-2ubuntu1), libgcrypt20 (= 1.10.2-2ubuntu1), libgdbm-compat4 (= 1.23-3), libgdbm6 (= 1.23-3), libgmp10 (= 2:6.3.0+dfsg-2ubuntu3), libgnutls30 (= 3.8.1-3ubuntu1), libgomp1 (= 13.2.0-2ubuntu1), libgpg-error0 (= 1.46-1), libgssapi-krb5-2 (= 1.20.1-2), libhogweed6 (= 3.9.1-2), libicu72 (= 72.1-3ubuntu2), libidn2-0 (= 2.3.4-1), libisl23 (= 0.26-3), libjansson4 (= 2.14-2), libjsoncpp25 (= 1.9.5-6), libk5crypto3 (= 1.20.1-2), libkeyutils1 (= 1.6.3-2), libkrb5-3 (= 1.20.1-2), libkrb5support0 (= 1.20.1-2), libldap2 (= 2.6.6+dfsg-1~exp1ubuntu1), liblz4-1 (= 1.9.4-1), liblzma5 (= 5.4.1-0.2), libmagic-mgc (= 1:5.44-3), libmagic1 (= 1:5.44-3), libmd0 (= 1.1.0-1), libmount1 (= 2.38.1-5ubuntu2), libmpc3 (= 1.3.1-1), libmpfr6 (= 4.2.0-1), libncursesw6 (= 6.4+20230625-2), libnettle8 (= 3.9.1-2), libnghttp2-14 (= 1.55.1-1), libnsl-dev (= 1.3.0-2build2), libnsl2 (= 1.3.0-2build2), libp11-kit0 (= 0.24.1-2ubuntu1), libpam-modules (= 1.5.2-6ubuntu1), libpam-modules-bin (= 1.5.2-6ubuntu1), libpam-runtime (= 1.5.2-6ubuntu1), libpam0g (= 1.5.2-6ubuntu1), libpcre2-8-0 (= 10.42-2), libperl5.36 (= 5.36.0-7ubuntu1), libpipeline1 (= 1.5.7-1), libproc2-0 (= 2:4.0.3-1ubuntu1), libpsl5 (= 0.21.2-1), librhash0 (= 1.4.3-3), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build4), libsasl2-2 (= 2.1.28+dfsg1-3), libsasl2-modules-db (= 2.1.28+dfsg1-3), libseccomp2 (= 2.5.4-1ubuntu3), libselinux1 (= 3.5-1), libsemanage-common (= 3.5-1), libsemanage2 (= 3.5-1), libsepol2 (= 3.5-1), libsframe1 (= 2.41-4ubuntu1), libsmartcols1 (= 2.38.1-5ubuntu2), libssh-4 (= 0.10.5-2), libssl3 (= 3.0.10-1ubuntu2), libstdc++-13-dev (= 13.2.0-2ubuntu1), libstdc++6 (= 13.2.0-2ubuntu1), libsub-override-perl (= 0.09-4), libsystemd0 (= 253.5-1ubuntu1), libtasn1-6 (= 4.19.0-3), libtinfo6 (= 6.4+20230625-2), libtirpc-common (= 1.3.3+ds-1), libtirpc-dev (= 1.3.3+ds-1), libtirpc3 (= 1.3.3+ds-1), libtool (= 2.4.7-7), libubsan1 (= 13.2.0-2ubuntu1), libuchardet0 (= 0.0.7-1build2), libudev1 (= 253.5-1ubuntu1), libunistring2 (= 1.0-2), libuuid1 (= 2.38.1-5ubuntu2), libuv1 (= 1.44.2-1), libxml2 (= 2.9.14+dfsg-1.3), libxxhash0 (= 0.8.1-1), libzstd1 (= 1.5.5+dfsg2-1ubuntu2), linux-libc-dev (= 6.3.0-7.7), login (= 1:4.13+dfsg1-1ubuntu1), lto-disabled-list (= 42), m4 (= 1.4.19-3), make (= 4.3-4.1build1), man-db (= 2.11.2-3), mawk (= 1.3.4.20230730-1), ncurses-base (= 6.4+20230625-2), ncurses-bin (= 6.4+20230625-2), passwd (= 1:4.13+dfsg1-1ubuntu1), patch (= 2.7.6-7build2), perl (= 5.36.0-7ubuntu1), perl-base (= 5.36.0-7ubuntu1), perl-modules-5.36 (= 5.36.0-7ubuntu1), po-debconf (= 1.0.21+nmu1), procps (= 2:4.0.3-1ubuntu1), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.9-1), sensible-utils (= 0.0.20), sysvinit-utils (= 3.07-1ubuntu1), tar (= 1.34+dfsg-1.2ubuntu1), ubuntu-keyring (= 2021.03.26), util-linux (= 2.38.1-5ubuntu2), util-linux-extra (= 2.38.1-5ubuntu2), xz-utils (= 5.4.1-0.2), zlib1g (= 1:1.2.13.dfsg-1ubuntu5) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1691925678" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libbpp-seq-dev_2.4.1-10_armhf.deb --------------------------------- new Debian package, version 2.0. size 830466 bytes: control archive=4322 bytes. 954 bytes, 21 lines control 10831 bytes, 133 lines md5sums Package: libbpp-seq-dev Source: libbpp-seq Version: 2.4.1-10 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 5494 Depends: libbpp-seq12 (= 2.4.1-10), libbpp-core-dev Section: libdevel Priority: optional Multi-Arch: same Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Description: Bio++ Sequence library development files Bio++ is a set of C++ libraries for Bioinformatics, including sequence analysis, phylogenetics, molecular evolution and population genetics. Bio++ is Object Oriented and is designed to be both easy to use and computer efficient. Bio++ intends to help programmers to write computer expensive programs, by providing them a set of re-usable tools. . This package contains the static library and the header files of Bio++ classes for sequence analysis classes. drwxr-xr-x root/root 0 2023-08-13 11:21 ./ drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/ drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/include/ drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/include/Bpp/ drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/include/Bpp/Seq/ drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/include/Bpp/Seq/Alphabet/ -rw-r--r-- root/root 8838 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h -rw-r--r-- root/root 17141 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/Alphabet.h -rw-r--r-- root/root 6250 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/AlphabetExceptions.h -rw-r--r-- root/root 2835 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/AlphabetNumericState.h -rw-r--r-- root/root 3834 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/AlphabetState.h -rw-r--r-- root/root 8263 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/AlphabetTools.h -rw-r--r-- root/root 2907 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/BinaryAlphabet.h -rw-r--r-- root/root 4501 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/CaseMaskedAlphabet.h -rw-r--r-- root/root 13007 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/CodonAlphabet.h -rw-r--r-- root/root 3083 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/DNA.h -rw-r--r-- root/root 2991 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/DefaultAlphabet.h -rw-r--r-- root/root 2984 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/IntegerAlphabet.h -rw-r--r-- root/root 4080 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h -rw-r--r-- root/root 3307 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/LexicalAlphabet.h -rw-r--r-- root/root 8599 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h -rw-r--r-- root/root 4181 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/NucleicAlphabetState.h -rw-r--r-- root/root 3759 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/NumericAlphabet.h -rw-r--r-- root/root 4621 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h -rw-r--r-- root/root 2784 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/ProteicAlphabetState.h -rw-r--r-- root/root 3032 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/RNA.h -rw-r--r-- root/root 4111 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/RNY.h -rw-r--r-- root/root 15640 2018-08-13 21:41 ./usr/include/Bpp/Seq/Alphabet/WordAlphabet.h drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/include/Bpp/Seq/AlphabetIndex/ -rw-r--r-- root/root 5055 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/AAChargeIndex.h -rw-r--r-- root/root 4300 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/AAChenGuHuangHydrophobicityIndex.h -rw-r--r-- root/root 3649 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/AAChouFasmanAHelixIndex.h -rw-r--r-- root/root 3647 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/AAChouFasmanBSheetIndex.h -rw-r--r-- root/root 3570 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/AAChouFasmanTurnIndex.h -rw-r--r-- root/root 3271 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/AAIndex1Entry.h -rw-r--r-- root/root 4018 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/AAIndex2Entry.h -rw-r--r-- root/root 3484 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/AAMassIndex.h -rw-r--r-- root/root 3649 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/AASEA1030Index.h -rw-r--r-- root/root 3676 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/AASEAInf10Index.h -rw-r--r-- root/root 3675 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/AASEASup30Index.h -rw-r--r-- root/root 3544 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/AASurfaceIndex.h -rw-r--r-- root/root 3563 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/AAVolumeIndex.h -rw-r--r-- root/root 3083 2018-08-13 21:41 ./usr/include/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h -rw-r--r-- root/root 3416 2018-08-13 21:41 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./usr/share/doc/libbpp-seq-dev/copyright libbpp-seq12_2.4.1-10_armhf.deb ------------------------------- new Debian package, version 2.0. size 485516 bytes: control archive=933 bytes. 922 bytes, 20 lines control 235 bytes, 3 lines md5sums 38 bytes, 1 lines shlibs 75 bytes, 2 lines triggers Package: libbpp-seq12 Source: libbpp-seq Version: 2.4.1-10 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1353 Depends: libbpp-core4 (>= 2.4.1), libc6 (>= 2.29), libgcc-s1 (>= 3.5), libstdc++6 (>= 13.1) Section: libs Priority: optional Multi-Arch: same Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Description: Bio++ Sequence library Bio++ is a set of C++ libraries for Bioinformatics, including sequence analysis, phylogenetics, molecular evolution and population genetics. Bio++ is Object Oriented and is designed to be both easy to use and computer efficient. Bio++ intends to help programmers to write computer expensive programs, by providing them a set of re-usable tools. . This package contains the Bio++ classes for sequence analysis. drwxr-xr-x root/root 0 2023-08-13 11:21 ./ drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/ drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/lib/ drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/lib/arm-linux-gnueabihf/ lrwxrwxrwx root/root 0 2023-08-13 11:21 ./usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12 -> libbpp-seq.so.12.0.0 -rw-r--r-- root/root 1349032 2023-08-13 11:21 ./usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/share/ drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-08-13 11:21 ./usr/share/doc/libbpp-seq12/ -rw-r--r-- root/root 847 2023-08-13 11:21 ./usr/share/doc/libbpp-seq12/changelog.Debian.gz -rw-r--r-- root/root 23163 2023-08-13 11:21 ./usr/share/doc/libbpp-seq12/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build Type: any Build-Space: 242656 Build-Time: 533 Distribution: mantic-proposed Host Architecture: armhf Install-Time: 57 Job: libbpp-seq_2.4.1-10.dsc Machine Architecture: arm64 Package: libbpp-seq Package-Time: 593 Source-Version: 2.4.1-10 Space: 242656 Status: successful Version: 2.4.1-10 -------------------------------------------------------------------------------- Finished at 2023-08-13T17:22:52Z Build needed 00:09:53, 242656k disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=mantic --arch=armhf PACKAGEBUILD-26502253 Scanning for processes to kill in build PACKAGEBUILD-26502253