https://launchpad.net/ubuntu/+source/libbio-samtools-perl/1.43-2build2/+build/24303485 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-049 5.4.0-124-generic #140-Ubuntu SMP Thu Aug 4 02:27:01 UTC 2022 aarch64 Buildd toolchain package versions: launchpad-buildd_219~583~ubuntu20.04.1 python3-lpbuildd_219~583~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.5 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1. Syncing the system clock with the buildd NTP service... 22 Aug 10:15:51 ntpdate[1845]: adjust time server 10.211.37.1 offset -0.000361 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=focal --arch=armhf PACKAGEBUILD-24303485 --image-type chroot /home/buildd/filecache-default/a77e1afdcf3761e08e999e63510e3d2f5c5a8a8d Creating target for build PACKAGEBUILD-24303485 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=focal --arch=armhf PACKAGEBUILD-24303485 Starting target for build PACKAGEBUILD-24303485 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=focal --arch=armhf PACKAGEBUILD-24303485 'deb http://ftpmaster.internal/ubuntu focal main universe' 'deb http://ftpmaster.internal/ubuntu focal-security main universe' 'deb http://ftpmaster.internal/ubuntu focal-updates main universe' 'deb http://ftpmaster.internal/ubuntu focal-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-24303485 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=focal --arch=armhf PACKAGEBUILD-24303485 Updating target for build PACKAGEBUILD-24303485 Get:1 http://ftpmaster.internal/ubuntu focal InRelease [265 kB] Get:2 http://ftpmaster.internal/ubuntu focal-security InRelease [114 kB] Get:3 http://ftpmaster.internal/ubuntu focal-updates InRelease [114 kB] Get:4 http://ftpmaster.internal/ubuntu focal-proposed InRelease [267 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main armhf Packages [934 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main Translation-en [506 kB] Get:7 http://ftpmaster.internal/ubuntu focal/universe armhf Packages [8321 kB] Get:8 http://ftpmaster.internal/ubuntu focal/universe Translation-en [5124 kB] Get:9 http://ftpmaster.internal/ubuntu focal-security/main armhf Packages [816 kB] Get:10 http://ftpmaster.internal/ubuntu focal-security/main Translation-en [282 kB] Get:11 http://ftpmaster.internal/ubuntu focal-security/universe armhf Packages [559 kB] Get:12 http://ftpmaster.internal/ubuntu focal-security/universe Translation-en [130 kB] Get:13 http://ftpmaster.internal/ubuntu focal-updates/main armhf Packages [1102 kB] Get:14 http://ftpmaster.internal/ubuntu focal-updates/main Translation-en [364 kB] Get:15 http://ftpmaster.internal/ubuntu focal-updates/universe armhf Packages [781 kB] Get:16 http://ftpmaster.internal/ubuntu focal-updates/universe Translation-en [213 kB] Get:17 http://ftpmaster.internal/ubuntu focal-proposed/main armhf Packages [201 kB] Get:18 http://ftpmaster.internal/ubuntu focal-proposed/main Translation-en [76.9 kB] Get:19 http://ftpmaster.internal/ubuntu focal-proposed/universe armhf Packages [40.7 kB] Get:20 http://ftpmaster.internal/ubuntu focal-proposed/universe Translation-en [25.6 kB] Fetched 20.2 MB in 5s (3680 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt base-files bash binutils binutils-arm-linux-gnueabihf binutils-common bsdutils build-essential ca-certificates cpp-9 dpkg dpkg-dev e2fsprogs fdisk g++-9 gcc-10-base gcc-9 gcc-9-base gpg gpg-agent gpgconf gpgv gzip libapparmor1 libapt-pkg6.0 libasan5 libatomic1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcc1-0 libcom-err2 libcryptsetup12 libctf-nobfd0 libctf0 libdevmapper1.02.1 libdpkg-perl libext2fs2 libfdisk1 libgcc-9-dev libgcc-s1 libgcrypt20 libgnutls30 libgomp1 libhogweed5 libjson-c4 libkmod2 liblz4-1 liblzma5 libmount1 libnettle7 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre3 libperl5.30 libprocps8 libseccomp2 libsepol1 libsmartcols1 libsqlite3-0 libss2 libssl1.1 libstdc++-9-dev libstdc++6 libsystemd0 libubsan1 libudev1 libuuid1 libzstd1 linux-libc-dev login logsave mount openssl passwd perl perl-base perl-modules-5.30 procps systemd systemd-sysv systemd-timesyncd tar tzdata ubuntu-keyring util-linux xz-utils zlib1g 94 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 61.6 MB of archives. After this operation, 15.0 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu focal-updates/main armhf libc6-dev armhf 2.31-0ubuntu9.9 [1916 kB] Get:2 http://ftpmaster.internal/ubuntu focal-updates/main armhf libc-dev-bin armhf 2.31-0ubuntu9.9 [63.7 kB] Get:3 http://ftpmaster.internal/ubuntu focal-proposed/main armhf linux-libc-dev armhf 5.4.0-125.141 [1082 kB] Get:4 http://ftpmaster.internal/ubuntu focal-security/main armhf libubsan1 armhf 10.3.0-1ubuntu1~20.04 [757 kB] Get:5 http://ftpmaster.internal/ubuntu focal-security/main armhf libgomp1 armhf 10.3.0-1ubuntu1~20.04 [87.2 kB] Get:6 http://ftpmaster.internal/ubuntu focal-security/main armhf gcc-10-base armhf 10.3.0-1ubuntu1~20.04 [20.2 kB] Get:7 http://ftpmaster.internal/ubuntu focal-security/main armhf libgcc-s1 armhf 10.3.0-1ubuntu1~20.04 [36.3 kB] Get:8 http://ftpmaster.internal/ubuntu focal-security/main armhf libcc1-0 armhf 10.3.0-1ubuntu1~20.04 [41.8 kB] Get:9 http://ftpmaster.internal/ubuntu focal-security/main armhf libatomic1 armhf 10.3.0-1ubuntu1~20.04 [7256 B] Get:10 http://ftpmaster.internal/ubuntu focal-security/main armhf libstdc++6 armhf 10.3.0-1ubuntu1~20.04 [441 kB] Get:11 http://ftpmaster.internal/ubuntu focal-updates/main armhf libc6 armhf 2.31-0ubuntu9.9 [2455 kB] Get:12 http://ftpmaster.internal/ubuntu focal-updates/main armhf base-files armhf 11ubuntu5.5 [60.1 kB] Get:13 http://ftpmaster.internal/ubuntu focal-security/main armhf bash armhf 5.0-6ubuntu1.2 [576 kB] Get:14 http://ftpmaster.internal/ubuntu focal-security/main armhf bsdutils armhf 1:2.34-0.1ubuntu9.3 [57.9 kB] Get:15 http://ftpmaster.internal/ubuntu focal-security/main armhf tar armhf 1.30+dfsg-7ubuntu0.20.04.2 [218 kB] Get:16 http://ftpmaster.internal/ubuntu focal-security/main armhf dpkg armhf 1.19.7ubuntu3.2 [1084 kB] Get:17 http://ftpmaster.internal/ubuntu focal-security/main armhf gzip armhf 1.10-0ubuntu4.1 [90.9 kB] Get:18 http://ftpmaster.internal/ubuntu focal-updates/main armhf login armhf 1:4.8.1-1ubuntu5.20.04.2 [217 kB] Get:19 http://ftpmaster.internal/ubuntu focal-security/main armhf libperl5.30 armhf 5.30.0-9ubuntu0.2 [3281 kB] Get:20 http://ftpmaster.internal/ubuntu focal-security/main armhf perl armhf 5.30.0-9ubuntu0.2 [224 kB] Get:21 http://ftpmaster.internal/ubuntu focal-security/main armhf perl-base armhf 5.30.0-9ubuntu0.2 [1409 kB] Get:22 http://ftpmaster.internal/ubuntu focal-security/main armhf perl-modules-5.30 all 5.30.0-9ubuntu0.2 [2738 kB] Get:23 http://ftpmaster.internal/ubuntu focal-proposed/main armhf zlib1g armhf 1:1.2.11.dfsg-2ubuntu1.4 [49.1 kB] Get:24 http://ftpmaster.internal/ubuntu focal-security/main armhf libblkid1 armhf 2.34-0.1ubuntu9.3 [124 kB] Get:25 http://ftpmaster.internal/ubuntu focal-security/main armhf libuuid1 armhf 2.34-0.1ubuntu9.3 [19.2 kB] Get:26 http://ftpmaster.internal/ubuntu focal-security/main armhf libfdisk1 armhf 2.34-0.1ubuntu9.3 [163 kB] Get:27 http://ftpmaster.internal/ubuntu focal-security/main armhf libmount1 armhf 2.34-0.1ubuntu9.3 [136 kB] Get:28 http://ftpmaster.internal/ubuntu focal-security/main armhf libsmartcols1 armhf 2.34-0.1ubuntu9.3 [88.6 kB] Get:29 http://ftpmaster.internal/ubuntu focal-security/main armhf fdisk armhf 2.34-0.1ubuntu9.3 [109 kB] Get:30 http://ftpmaster.internal/ubuntu focal-security/main armhf util-linux armhf 2.34-0.1ubuntu9.3 [958 kB] Get:31 http://ftpmaster.internal/ubuntu focal-updates/main armhf libc-bin armhf 2.31-0ubuntu9.9 [492 kB] Get:32 http://ftpmaster.internal/ubuntu focal-security/main armhf libgcrypt20 armhf 1.8.5-5ubuntu1.1 [365 kB] Get:33 http://ftpmaster.internal/ubuntu focal-security/main armhf liblz4-1 armhf 1.9.2-2ubuntu0.20.04.1 [51.9 kB] Get:34 http://ftpmaster.internal/ubuntu focal-security/main armhf liblzma5 armhf 5.2.4-1ubuntu1.1 [83.6 kB] Get:35 http://ftpmaster.internal/ubuntu focal-updates/main armhf systemd-timesyncd armhf 245.4-4ubuntu3.17 [27.9 kB] Get:36 http://ftpmaster.internal/ubuntu focal-updates/main armhf systemd-sysv armhf 245.4-4ubuntu3.17 [10.3 kB] Get:37 http://ftpmaster.internal/ubuntu focal-updates/main armhf libapparmor1 armhf 2.13.3-7ubuntu5.1 [29.0 kB] Get:38 http://ftpmaster.internal/ubuntu focal-updates/main armhf libudev1 armhf 245.4-4ubuntu3.17 [68.6 kB] Get:39 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libdevmapper1.02.1 armhf 2:1.02.167-1ubuntu1.1 [118 kB] Get:40 http://ftpmaster.internal/ubuntu focal-security/main armhf libjson-c4 armhf 0.13.1+dfsg-7ubuntu0.3 [25.8 kB] Get:41 http://ftpmaster.internal/ubuntu focal-security/main armhf libssl1.1 armhf 1.1.1f-1ubuntu2.16 [1082 kB] Get:42 http://ftpmaster.internal/ubuntu focal-security/main armhf libcryptsetup12 armhf 2:2.2.2-3ubuntu2.4 [147 kB] Get:43 http://ftpmaster.internal/ubuntu focal-security/main armhf libnettle7 armhf 3.5.1+really3.5.1-2ubuntu0.2 [127 kB] Get:44 http://ftpmaster.internal/ubuntu focal-security/main armhf libhogweed5 armhf 3.5.1+really3.5.1-2ubuntu0.2 [127 kB] Get:45 http://ftpmaster.internal/ubuntu focal-security/main armhf libp11-kit0 armhf 0.23.20-1ubuntu0.1 [168 kB] Get:46 http://ftpmaster.internal/ubuntu focal-security/main armhf libgnutls30 armhf 3.6.13-2ubuntu1.7 [766 kB] Get:47 http://ftpmaster.internal/ubuntu focal-security/main armhf libzstd1 armhf 1.4.4+dfsg-3ubuntu0.1 [207 kB] Get:48 http://ftpmaster.internal/ubuntu focal-updates/main armhf libkmod2 armhf 27-1ubuntu2.1 [39.1 kB] Get:49 http://ftpmaster.internal/ubuntu focal-updates/main armhf libpam0g armhf 1.3.1-5ubuntu4.3 [49.5 kB] Get:50 http://ftpmaster.internal/ubuntu focal-security/main armhf libseccomp2 armhf 2.5.1-1ubuntu1~20.04.2 [40.6 kB] Get:51 http://ftpmaster.internal/ubuntu focal-security/main armhf mount armhf 2.34-0.1ubuntu9.3 [108 kB] Get:52 http://ftpmaster.internal/ubuntu focal-updates/main armhf systemd armhf 245.4-4ubuntu3.17 [3651 kB] Get:53 http://ftpmaster.internal/ubuntu focal-updates/main armhf libsystemd0 armhf 245.4-4ubuntu3.17 [248 kB] Get:54 http://ftpmaster.internal/ubuntu focal-updates/main armhf libapt-pkg6.0 armhf 2.0.9 [755 kB] Get:55 http://ftpmaster.internal/ubuntu focal-security/main armhf gpgv armhf 2.2.19-3ubuntu2.2 [170 kB] Get:56 http://ftpmaster.internal/ubuntu focal-updates/main armhf ubuntu-keyring all 2020.02.11.4 [22.1 kB] Get:57 http://ftpmaster.internal/ubuntu focal-updates/main armhf apt armhf 2.0.9 [1249 kB] Get:58 http://ftpmaster.internal/ubuntu focal-updates/main armhf libpam-modules-bin armhf 1.3.1-5ubuntu4.3 [37.3 kB] Get:59 http://ftpmaster.internal/ubuntu focal-updates/main armhf libpam-modules armhf 1.3.1-5ubuntu4.3 [242 kB] Get:60 http://ftpmaster.internal/ubuntu focal-security/main armhf logsave armhf 1.45.5-2ubuntu1.1 [9568 B] Get:61 http://ftpmaster.internal/ubuntu focal-security/main armhf libext2fs2 armhf 1.45.5-2ubuntu1.1 [170 kB] Get:62 http://ftpmaster.internal/ubuntu focal-security/main armhf e2fsprogs armhf 1.45.5-2ubuntu1.1 [509 kB] Get:63 http://ftpmaster.internal/ubuntu focal-updates/main armhf libpam-runtime all 1.3.1-5ubuntu4.3 [37.3 kB] Get:64 http://ftpmaster.internal/ubuntu focal-security/main armhf libpcre3 armhf 2:8.39-12ubuntu0.1 [212 kB] Get:65 http://ftpmaster.internal/ubuntu focal-security/main armhf libsepol1 armhf 3.0-1ubuntu0.1 [220 kB] Get:66 http://ftpmaster.internal/ubuntu focal-updates/main armhf passwd armhf 1:4.8.1-1ubuntu5.20.04.2 [751 kB] Get:67 http://ftpmaster.internal/ubuntu focal-security/main armhf libcom-err2 armhf 1.45.5-2ubuntu1.1 [8576 B] Get:68 http://ftpmaster.internal/ubuntu focal-updates/main armhf libprocps8 armhf 2:3.3.16-1ubuntu2.3 [29.8 kB] Get:69 http://ftpmaster.internal/ubuntu focal-security/main armhf libss2 armhf 1.45.5-2ubuntu1.1 [9392 B] Get:70 http://ftpmaster.internal/ubuntu focal-updates/main armhf procps armhf 2:3.3.16-1ubuntu2.3 [222 kB] Get:71 http://ftpmaster.internal/ubuntu focal-security/main armhf openssl armhf 1.1.1f-1ubuntu2.16 [597 kB] Get:72 http://ftpmaster.internal/ubuntu focal-security/main armhf ca-certificates all 20211016~20.04.1 [144 kB] Get:73 http://ftpmaster.internal/ubuntu focal-security/main armhf libsqlite3-0 armhf 3.31.1-4ubuntu0.3 [468 kB] Get:74 http://ftpmaster.internal/ubuntu focal-security/main armhf tzdata all 2022a-0ubuntu0.20.04 [294 kB] Get:75 http://ftpmaster.internal/ubuntu focal-security/main armhf xz-utils armhf 5.2.4-1ubuntu1.1 [81.0 kB] Get:76 http://ftpmaster.internal/ubuntu focal-security/main armhf libctf0 armhf 2.34-6ubuntu1.3 [37.2 kB] Get:77 http://ftpmaster.internal/ubuntu focal-security/main armhf binutils-arm-linux-gnueabihf armhf 2.34-6ubuntu1.3 [2096 kB] Get:78 http://ftpmaster.internal/ubuntu focal-security/main armhf libbinutils armhf 2.34-6ubuntu1.3 [317 kB] Get:79 http://ftpmaster.internal/ubuntu focal-security/main armhf binutils armhf 2.34-6ubuntu1.3 [3368 B] Get:80 http://ftpmaster.internal/ubuntu focal-security/main armhf binutils-common armhf 2.34-6ubuntu1.3 [207 kB] Get:81 http://ftpmaster.internal/ubuntu focal-security/main armhf libctf-nobfd0 armhf 2.34-6ubuntu1.3 [38.0 kB] Get:82 http://ftpmaster.internal/ubuntu focal-security/main armhf dpkg-dev all 1.19.7ubuntu3.2 [679 kB] Get:83 http://ftpmaster.internal/ubuntu focal-security/main armhf libdpkg-perl all 1.19.7ubuntu3.2 [231 kB] Get:84 http://ftpmaster.internal/ubuntu focal-updates/main armhf build-essential armhf 12.8ubuntu1.1 [4664 B] Get:85 http://ftpmaster.internal/ubuntu focal-security/main armhf libasan5 armhf 9.4.0-1ubuntu1~20.04.1 [2808 kB] Get:86 http://ftpmaster.internal/ubuntu focal-security/main armhf g++-9 armhf 9.4.0-1ubuntu1~20.04.1 [6699 kB] Get:87 http://ftpmaster.internal/ubuntu focal-security/main armhf gcc-9 armhf 9.4.0-1ubuntu1~20.04.1 [6584 kB] Get:88 http://ftpmaster.internal/ubuntu focal-security/main armhf libstdc++-9-dev armhf 9.4.0-1ubuntu1~20.04.1 [1792 kB] Get:89 http://ftpmaster.internal/ubuntu focal-security/main armhf libgcc-9-dev armhf 9.4.0-1ubuntu1~20.04.1 [683 kB] Get:90 http://ftpmaster.internal/ubuntu focal-security/main armhf cpp-9 armhf 9.4.0-1ubuntu1~20.04.1 [5888 kB] Get:91 http://ftpmaster.internal/ubuntu focal-security/main armhf gcc-9-base armhf 9.4.0-1ubuntu1~20.04.1 [19.4 kB] Get:92 http://ftpmaster.internal/ubuntu focal-security/main armhf gpg armhf 2.2.19-3ubuntu2.2 [425 kB] Get:93 http://ftpmaster.internal/ubuntu focal-security/main armhf gpgconf armhf 2.2.19-3ubuntu2.2 [107 kB] Get:94 http://ftpmaster.internal/ubuntu focal-security/main armhf gpg-agent armhf 2.2.19-3ubuntu2.2 [195 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 61.6 MB in 4s (14.4 MB/s) (Reading database ... 12562 files and directories currently installed.) 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RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-24303485 armhf focal-proposed -c chroot:build-PACKAGEBUILD-24303485 --arch=armhf --dist=focal-proposed --nolog libbio-samtools-perl_1.43-2build2.dsc Initiating build PACKAGEBUILD-24303485 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-124-generic #140-Ubuntu SMP Thu Aug 4 02:27:01 UTC 2022 armv7l sbuild (Debian sbuild) 0.79.0 (05 February 2020) on bos02-arm64-049.buildd +==============================================================================+ | libbio-samtools-perl 1.43-2build2 (armhf) Mon, 22 Aug 2022 10:16:46 +0000 | +==============================================================================+ Package: libbio-samtools-perl Version: 1.43-2build2 Source Version: 1.43-2build2 Distribution: focal-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-24303485/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/libbio-samtools-perl-zZIjO7/resolver-dklKDV' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- libbio-samtools-perl_1.43-2build2.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/libbio-samtools-perl-zZIjO7/libbio-samtools-perl-1.43' with '<>' I: NOTICE: Log filtering will replace 'build/libbio-samtools-perl-zZIjO7' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 12~), perl, libmodule-build-perl, zlib1g-dev, libbam-dev, libbio-perl-perl, build-essential, fakeroot Filtered Build-Depends: debhelper (>= 12~), perl, libmodule-build-perl, zlib1g-dev, libbam-dev, libbio-perl-perl, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [397 B] Get:5 copy:/<>/apt_archive ./ Packages [481 B] Fetched 1835 B in 0s (53.7 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbam-dev libbio-perl-perl libbsd0 libcroco3 libdata-stag-perl libdebhelper-perl libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libicu66 libio-string-perl libmagic-mgc libmagic1 libmodule-build-perl libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff bioperl libxml-sax-expatxs-perl libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx bioperl-run | libbio-perl-run-perl libace-perl libalgorithm-munkres-perl libarray-compare-perl libbio-asn1-entrezgene-perl libclone-perl libconvert-binary-c-perl libdbd-sqlite3-perl libdbd-mysql-perl libdbd-pg-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-parser-perl libhtml-tableextract-perl liblist-moreutils-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-perl libsvg-graph-perl liburi-perl libxml-dom-xpath-perl libxml-parser-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-libxml-perl libwww-perl perl-tk libgd-gd2-perl | libgd-gd2-noxpm-perl libxml-libxslt-perl libmldbm-perl libxml-perl libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libmodule-signature-perl libpod-readme-perl libsoftware-license-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbam-dev libbio-perl-perl libbsd0 libcroco3 libdata-stag-perl libdebhelper-perl libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libicu66 libio-string-perl libmagic-mgc libmagic1 libmodule-build-perl libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf sbuild-build-depends-main-dummy zlib1g-dev 0 upgraded, 40 newly installed, 0 to remove and 0 not upgraded. Need to get 19.9 MB of archives. After this operation, 72.0 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [900 B] Get:2 http://ftpmaster.internal/ubuntu focal/main armhf libbsd0 armhf 0.10.0-1 [49.8 kB] Get:3 http://ftpmaster.internal/ubuntu focal/main armhf bsdmainutils armhf 11.1.2ubuntu3 [176 kB] Get:4 http://ftpmaster.internal/ubuntu focal/main armhf libuchardet0 armhf 0.0.6-3build1 [62.4 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main armhf groff-base armhf 1.22.4-4build1 [759 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main armhf libpipeline1 armhf 1.5.2-2build1 [23.5 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main armhf man-db armhf 2.9.1-1 [1077 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main armhf libmagic-mgc armhf 1:5.38-4 [218 kB] Get:9 http://ftpmaster.internal/ubuntu focal/main armhf libmagic1 armhf 1:5.38-4 [68.3 kB] Get:10 http://ftpmaster.internal/ubuntu focal/main armhf file armhf 1:5.38-4 [22.4 kB] Get:11 http://ftpmaster.internal/ubuntu focal/main armhf libelf1 armhf 0.176-1.1build1 [41.3 kB] Get:12 http://ftpmaster.internal/ubuntu focal-updates/main armhf libglib2.0-0 armhf 2.64.6-1~ubuntu20.04.4 [1125 kB] Get:13 http://ftpmaster.internal/ubuntu focal-security/main armhf libicu66 armhf 66.1-2ubuntu2.1 [8223 kB] Get:14 http://ftpmaster.internal/ubuntu focal-security/main armhf libxml2 armhf 2.9.10+dfsg-5ubuntu0.20.04.4 [546 kB] Get:15 http://ftpmaster.internal/ubuntu focal/main armhf gettext-base armhf 0.19.8.1-10build1 [46.0 kB] Get:16 http://ftpmaster.internal/ubuntu focal/main armhf libsigsegv2 armhf 2.12-2 [13.1 kB] Get:17 http://ftpmaster.internal/ubuntu focal/main armhf m4 armhf 1.4.18-4 [187 kB] Get:18 http://ftpmaster.internal/ubuntu focal/main armhf autoconf all 2.69-11.1 [321 kB] Get:19 http://ftpmaster.internal/ubuntu focal/main armhf autotools-dev all 20180224.1 [39.6 kB] Get:20 http://ftpmaster.internal/ubuntu focal/main armhf automake all 1:1.16.1-4ubuntu6 [522 kB] Get:21 http://ftpmaster.internal/ubuntu focal/main armhf autopoint all 0.19.8.1-10build1 [412 kB] Get:22 http://ftpmaster.internal/ubuntu focal/main armhf libtool all 2.4.6-14 [161 kB] Get:23 http://ftpmaster.internal/ubuntu focal/main armhf dh-autoreconf all 19 [16.1 kB] Get:24 http://ftpmaster.internal/ubuntu focal/main armhf libdebhelper-perl all 12.10ubuntu1 [62.1 kB] Get:25 http://ftpmaster.internal/ubuntu focal/main armhf libarchive-zip-perl all 1.67-2 [90.5 kB] Get:26 http://ftpmaster.internal/ubuntu focal/main armhf libsub-override-perl all 0.09-2 [9532 B] Get:27 http://ftpmaster.internal/ubuntu focal/main armhf libfile-stripnondeterminism-perl all 1.7.0-1 [15.9 kB] Get:28 http://ftpmaster.internal/ubuntu focal/main armhf dh-strip-nondeterminism all 1.7.0-1 [5228 B] Get:29 http://ftpmaster.internal/ubuntu focal/main armhf dwz armhf 0.13-5 [153 kB] Get:30 http://ftpmaster.internal/ubuntu focal/main armhf libcroco3 armhf 0.6.13-1 [70.5 kB] Get:31 http://ftpmaster.internal/ubuntu focal/main armhf gettext armhf 0.19.8.1-10build1 [835 kB] Get:32 http://ftpmaster.internal/ubuntu focal/main armhf intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:33 http://ftpmaster.internal/ubuntu focal/main armhf po-debconf all 1.0.21 [233 kB] Get:34 http://ftpmaster.internal/ubuntu focal/main armhf debhelper all 12.10ubuntu1 [877 kB] Get:35 http://ftpmaster.internal/ubuntu focal-proposed/universe armhf libbam-dev armhf 0.1.19-4ubuntu0.1 [99.8 kB] Get:36 http://ftpmaster.internal/ubuntu focal/main armhf libio-string-perl all 1.08-3 [11.1 kB] Get:37 http://ftpmaster.internal/ubuntu focal/universe armhf libdata-stag-perl all 0.14-2 [369 kB] Get:38 http://ftpmaster.internal/ubuntu focal/universe armhf libbio-perl-perl all 1.7.7-1 [2567 kB] Get:39 http://ftpmaster.internal/ubuntu focal/universe armhf libmodule-build-perl all 0.423100-1 [200 kB] Get:40 http://ftpmaster.internal/ubuntu focal-proposed/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2ubuntu1.4 [150 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 19.9 MB in 2s (11.1 MB/s) Selecting previously unselected package libbsd0:armhf. 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Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libpipeline1:armhf (1.5.2-2build1) ... Setting up libmagic-mgc (1:5.38-4) ... Setting up libarchive-zip-perl (1.67-2) ... Setting up libglib2.0-0:armhf (2.64.6-1~ubuntu20.04.4) ... No schema files found: doing nothing. Setting up libicu66:armhf (66.1-2ubuntu2.1) ... Setting up libdebhelper-perl (12.10ubuntu1) ... Setting up libmagic1:armhf (1:5.38-4) ... Setting up gettext-base (0.19.8.1-10build1) ... Setting up file (1:5.38-4) ... Setting up libmodule-build-perl (0.423100-1) ... Setting up libio-string-perl (1.08-3) ... Setting up autotools-dev (20180224.1) ... Setting up libsigsegv2:armhf (2.12-2) ... Setting up autopoint (0.19.8.1-10build1) ... Setting up libbam-dev (0.1.19-4ubuntu0.1) ... Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-2ubuntu1.4) ... Setting up libdata-stag-perl (0.14-2) ... Setting up libuchardet0:armhf (0.0.6-3build1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libbio-perl-perl (1.7.7-1) ... Setting up libbsd0:armhf (0.10.0-1) ... Setting up libelf1:armhf (0.176-1.1build1) ... Setting up libxml2:armhf (2.9.10+dfsg-5ubuntu0.20.04.4) ... Setting up libfile-stripnondeterminism-perl (1.7.0-1) ... Setting up libtool (2.4.6-14) ... Setting up m4 (1.4.18-4) ... Setting up bsdmainutils (11.1.2ubuntu3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:armhf (0.6.13-1) ... Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.7.0-1) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-4build1) ... Setting up automake (1:1.16.1-4ubuntu6) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-10build1) ... Setting up man-db (2.9.1-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up po-debconf (1.0.21) ... Setting up dh-autoreconf (19) ... Setting up debhelper (12.10ubuntu1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.31-0ubuntu9.9) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-124-generic #140-Ubuntu SMP Thu Aug 4 02:27:01 UTC 2022 arm64 (armv7l) Toolchain package versions: binutils_2.34-6ubuntu1.3 dpkg-dev_1.19.7ubuntu3.2 g++-9_9.4.0-1ubuntu1~20.04.1 gcc-9_9.4.0-1ubuntu1~20.04.1 libc6-dev_2.31-0ubuntu9.9 libstdc++-9-dev_9.4.0-1ubuntu1~20.04.1 libstdc++6_10.3.0-1ubuntu1~20.04 linux-libc-dev_5.4.0-125.141 Package versions: adduser_3.118ubuntu2 advancecomp_2.1-2.1build1 apt_2.0.9 autoconf_2.69-11.1 automake_1:1.16.1-4ubuntu6 autopoint_0.19.8.1-10build1 autotools-dev_20180224.1 base-files_11ubuntu5.5 base-passwd_3.5.47 bash_5.0-6ubuntu1.2 binutils_2.34-6ubuntu1.3 binutils-arm-linux-gnueabihf_2.34-6ubuntu1.3 binutils-common_2.34-6ubuntu1.3 bsdmainutils_11.1.2ubuntu3 bsdutils_1:2.34-0.1ubuntu9.3 build-essential_12.8ubuntu1.1 bzip2_1.0.8-2 ca-certificates_20211016~20.04.1 coreutils_8.30-3ubuntu2 cpp_4:9.3.0-1ubuntu2 cpp-9_9.4.0-1ubuntu1~20.04.1 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.10ubuntu1 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.7.0-1 diffutils_1:3.7-3 dpkg_1.19.7ubuntu3.2 dpkg-dev_1.19.7ubuntu3.2 dwz_0.13-5 e2fsprogs_1.45.5-2ubuntu1.1 fakeroot_1.24-1 fdisk_2.34-0.1ubuntu9.3 file_1:5.38-4 findutils_4.7.0-1ubuntu1 g++_4:9.3.0-1ubuntu2 g++-9_9.4.0-1ubuntu1~20.04.1 gcc_4:9.3.0-1ubuntu2 gcc-10-base_10.3.0-1ubuntu1~20.04 gcc-9_9.4.0-1ubuntu1~20.04.1 gcc-9-base_9.4.0-1ubuntu1~20.04.1 gettext_0.19.8.1-10build1 gettext-base_0.19.8.1-10build1 gpg_2.2.19-3ubuntu2.2 gpg-agent_2.2.19-3ubuntu2.2 gpgconf_2.2.19-3ubuntu2.2 gpgv_2.2.19-3ubuntu2.2 grep_3.4-1 groff-base_1.22.4-4build1 gzip_1.10-0ubuntu4.1 hostname_3.23 init_1.57 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-6 libapparmor1_2.13.3-7ubuntu5.1 libapt-pkg6.0_2.0.9 libarchive-zip-perl_1.67-2 libargon2-1_0~20171227-0.2 libasan5_9.4.0-1ubuntu1~20.04.1 libassuan0_2.5.3-7ubuntu2 libatomic1_10.3.0-1ubuntu1~20.04 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2ubuntu6 libaudit1_1:2.8.5-2ubuntu6 libbam-dev_0.1.19-4ubuntu0.1 libbinutils_2.34-6ubuntu1.3 libbio-perl-perl_1.7.7-1 libblkid1_2.34-0.1ubuntu9.3 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.31-0ubuntu9.9 libc-dev-bin_2.31-0ubuntu9.9 libc6_2.31-0ubuntu9.9 libc6-dev_2.31-0ubuntu9.9 libcap-ng0_0.7.9-2.1build1 libcap2_1:2.32-1 libcc1-0_10.3.0-1ubuntu1~20.04 libcom-err2_1.45.5-2ubuntu1.1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.10-10ubuntu4 libcrypt1_1:4.4.10-10ubuntu4 libcryptsetup12_2:2.2.2-3ubuntu2.4 libctf-nobfd0_2.34-6ubuntu1.3 libctf0_2.34-6ubuntu1.3 libdata-stag-perl_0.14-2 libdb5.3_5.3.28+dfsg1-0.6ubuntu2 libdebconfclient0_0.251ubuntu1 libdebhelper-perl_12.10ubuntu1 libdevmapper1.02.1_2:1.02.167-1ubuntu1.1 libdpkg-perl_1.19.7ubuntu3.2 libelf1_0.176-1.1build1 libext2fs2_1.45.5-2ubuntu1.1 libfakeroot_1.24-1 libfdisk1_2.34-0.1ubuntu9.3 libffi7_3.3-4 libfile-stripnondeterminism-perl_1.7.0-1 libgcc-9-dev_9.4.0-1ubuntu1~20.04.1 libgcc-s1_10.3.0-1ubuntu1~20.04 libgcrypt20_1.8.5-5ubuntu1.1 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.64.6-1~ubuntu20.04.4 libgmp10_2:6.2.0+dfsg-4 libgnutls30_3.6.13-2ubuntu1.7 libgomp1_10.3.0-1ubuntu1~20.04 libgpg-error0_1.37-1 libhogweed5_3.5.1+really3.5.1-2ubuntu0.2 libicu66_66.1-2ubuntu2.1 libidn2-0_2.2.0-2 libio-string-perl_1.08-3 libip4tc2_1.8.4-3ubuntu2 libisl22_0.22.1-1 libjson-c4_0.13.1+dfsg-7ubuntu0.3 libkmod2_27-1ubuntu2.1 liblockfile-bin_1.16-1.1 liblockfile1_1.16-1.1 liblz4-1_1.9.2-2ubuntu0.20.04.1 liblzma5_5.2.4-1ubuntu1.1 libmagic-mgc_1:5.38-4 libmagic1_1:5.38-4 libmodule-build-perl_0.423100-1 libmount1_2.34-0.1ubuntu9.3 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libncurses6_6.2-0ubuntu2 libncursesw6_6.2-0ubuntu2 libnettle7_3.5.1+really3.5.1-2ubuntu0.2 libnpth0_1.6-1 libp11-kit0_0.23.20-1ubuntu0.1 libpam-modules_1.3.1-5ubuntu4.3 libpam-modules-bin_1.3.1-5ubuntu4.3 libpam-runtime_1.3.1-5ubuntu4.3 libpam0g_1.3.1-5ubuntu4.3 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12ubuntu0.1 libperl5.30_5.30.0-9ubuntu0.2 libpipeline1_1.5.2-2build1 libpng16-16_1.6.37-2 libprocps8_2:3.3.16-1ubuntu2.3 libreadline8_8.0-4 libseccomp2_2.5.1-1ubuntu1~20.04.2 libselinux1_3.0-1build2 libsemanage-common_3.0-1build2 libsemanage1_3.0-1build2 libsepol1_3.0-1ubuntu0.1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1ubuntu9.3 libsqlite3-0_3.31.1-4ubuntu0.3 libss2_1.45.5-2ubuntu1.1 libssl1.1_1.1.1f-1ubuntu2.16 libstdc++-9-dev_9.4.0-1ubuntu1~20.04.1 libstdc++6_10.3.0-1ubuntu1~20.04 libsub-override-perl_0.09-2 libsystemd0_245.4-4ubuntu3.17 libtasn1-6_4.16.0-2 libtinfo6_6.2-0ubuntu2 libtool_2.4.6-14 libubsan1_10.3.0-1ubuntu1~20.04 libuchardet0_0.0.6-3build1 libudev1_245.4-4ubuntu3.17 libunistring2_0.9.10-2 libuuid1_2.34-0.1ubuntu9.3 libxml2_2.9.10+dfsg-5ubuntu0.20.04.4 libzstd1_1.4.4+dfsg-3ubuntu0.1 linux-libc-dev_5.4.0-125.141 lockfile-progs_0.1.18 login_1:4.8.1-1ubuntu5.20.04.2 logsave_1.45.5-2ubuntu1.1 lsb-base_11.1.0ubuntu2 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.1-1 mawk_1.3.4.20200120-2 mount_2.34-0.1ubuntu9.3 ncurses-base_6.2-0ubuntu2 ncurses-bin_6.2-0ubuntu2 openssl_1.1.1f-1ubuntu2.16 optipng_0.7.7-1 passwd_1:4.8.1-1ubuntu5.20.04.2 patch_2.7.6-6 perl_5.30.0-9ubuntu0.2 perl-base_5.30.0-9ubuntu0.2 perl-modules-5.30_5.30.0-9ubuntu0.2 pinentry-curses_1.1.0-3build1 pkgbinarymangler_144 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.16-1ubuntu2.3 readline-common_8.0-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 systemd_245.4-4ubuntu3.17 systemd-sysv_245.4-4ubuntu3.17 systemd-timesyncd_245.4-4ubuntu3.17 sysvinit-utils_2.96-2.1ubuntu1 tar_1.30+dfsg-7ubuntu0.20.04.2 tzdata_2022a-0ubuntu0.20.04 ubuntu-keyring_2020.02.11.4 util-linux_2.34-0.1ubuntu9.3 xz-utils_5.2.4-1ubuntu1.1 zlib1g_1:1.2.11.dfsg-2ubuntu1.4 zlib1g-dev_1:1.2.11.dfsg-2ubuntu1.4 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libbio-samtools-perl Binary: libbio-samtools-perl Architecture: any Version: 1.43-2build2 Maintainer: Debian Perl Group Uploaders: Charles Plessy Homepage: https://metacpan.org/release/Bio-SamTools Standards-Version: 4.3.0 Vcs-Browser: https://salsa.debian.org/perl-team/modules/packages/libbio-samtools-perl Vcs-Git: https://salsa.debian.org/perl-team/modules/packages/libbio-samtools-perl.git Testsuite: autopkgtest-pkg-perl Build-Depends: debhelper (>= 12~), perl, libmodule-build-perl, zlib1g-dev, libbam-dev, libbio-perl-perl Package-List: libbio-samtools-perl deb perl optional arch=any Checksums-Sha1: 140779726f17ef29f1a6028b34ed836d0a85f24c 340833 libbio-samtools-perl_1.43.orig.tar.gz ad9dcf47afe6381733d0f2e1841c4b3b33b724ba 8388 libbio-samtools-perl_1.43-2build2.debian.tar.xz Checksums-Sha256: 7085ee5e97ad75dbbebd8583072d67b2b06d29e7a9f9741c9ac58dabe300d3fd 340833 libbio-samtools-perl_1.43.orig.tar.gz ea8dd47ea89f77fe955ec39a48a2be20bbd6bda7dd044b21078419a13a96a271 8388 libbio-samtools-perl_1.43-2build2.debian.tar.xz Files: d36d7bfe91d6eaa8d220a2cb08d04a94 340833 libbio-samtools-perl_1.43.orig.tar.gz 57714aec86dd2cc0f14604caf19f93a7 8388 libbio-samtools-perl_1.43-2build2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEE496GmCL5m2y8NfJ5v322IrMDrIsFAmMDUsgACgkQv322IrMD rIuhKw//edwPq4mHqOJLuGrVQ0FrZY6wtSYzQylWvm5xtpZzWgAMuKpnWz0I7kVr ACjT9PA2LDrxSVJJwWLRNqdwX5+3yMDgiYXqwd0WAM1VTtDAyEGwjew7cYuTGslM CruQwgfqpN2B1VpwPVS0e2EWyBw0zVm6E2bwR/7WAgc2kTTfY46bCyVqKd9njBrc 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space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-24303485 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-24303485 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-24303485 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package libbio-samtools-perl dpkg-buildpackage: info: source version 1.43-2build2 dpkg-buildpackage: info: source distribution focal dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' SAMTOOLS=/usr/include/samtools dh_auto_configure perl Build.PL --installdirs vendor --config "optimize=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" --config "ld=arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro" Found /usr/include/samtools/bam.h and /usr/lib/libbam.a. Created MYMETA.yml and MYMETA.json Creating new 'Build' script for 'Bio-SamTools' version '1.43' make[1]: Leaving directory '/<>' dh_auto_build -a perl Build Building Bio-SamTools arm-linux-gnueabihf-gcc -I/usr/include/samtools -Ic_bin -I/usr/lib/arm-linux-gnueabihf/perl/5.30/CORE -fPIC -D_IOLIB=2 -D_FILE_OFFSET_BITS=64 -Wformat=0 -c -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o c_bin/bam2bedgraph.o c_bin/bam2bedgraph.c arm-linux-gnueabihf-gcc -I/usr/include/samtools -Ic_bin -I/usr/lib/arm-linux-gnueabihf/perl/5.30/CORE -DVERSION="1.43" -DXS_VERSION="1.43" -fPIC -D_IOLIB=2 -D_FILE_OFFSET_BITS=64 -Wformat=0 -c -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o lib/Bio/DB/Sam.o lib/Bio/DB/Sam.c lib/Bio/DB/Sam.xs: In function ‘XS_Bio__DB__Bam_sort_core’: lib/Bio/DB/Sam.xs:324:4: warning: implicit declaration of function ‘bam_sort_core’; did you mean ‘bam_format1_core’? [-Wimplicit-function-declaration] 324 | bam_sort_core(is_by_qname,filename,prefix,max_mem); | ^~~~~~~~~~~~~ | bam_format1_core lib/Bio/DB/Sam.xs: In function ‘XS_Bio__DB__Bam__Header_view1’: lib/Bio/DB/Sam.xs:916:8: warning: implicit declaration of function ‘bam_view1’ [-Wimplicit-function-declaration] 916 | bam_view1(bamh,alignment); | ^~~~~~~~~ ExtUtils::Mkbootstrap::Mkbootstrap('blib/arch/auto/Bio/DB/Sam/Sam.bs') arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -L/usr/local/lib -fstack-protector-strong -o blib/arch/auto/Bio/DB/Sam/Sam.so lib/Bio/DB/Sam.o c_bin/bam2bedgraph.o -L/usr/lib -lbam -lpthread -lz make[1]: Entering directory '/<>/c_bin' gcc -g -Wall -O2 -fPIC -o bam2bedgraph bam2bedgraph.o -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib -lbam -lpthread -lm -lz make[1]: Leaving directory '/<>/c_bin' dh_auto_test -a perl Build test --verbose 1 make[1]: Entering directory '/<>/c_bin' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/<>/c_bin' [fai_load] build FASTA index. [bam_parse_region] fail to determine the sequence name. t/01sam.t .. 1..268 # Running under perl version 5.030000 for linux # Current time local: Mon Aug 22 10:17:10 2022 # Current time GMT: Mon Aug 22 10:17:10 2022 # Using Test.pm version 1.31 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 ok 34 ok 35 ok 36 ok 37 ok 38 ok 39 ok 40 ok 41 ok 42 ok 43 ok 44 ok 45 ok 46 ok 47 ok 48 ok 49 ok 50 ok 51 ok 52 ok 53 ok 54 ok 55 ok 56 ok 57 ok 58 ok 59 ok 60 ok 61 ok 62 ok 63 ok 64 ok 65 ok 66 ok 67 ok 68 ok 69 ok 70 ok 71 ok 72 ok 73 ok 74 ok 75 ok 76 ok 77 ok 78 ok 79 ok 80 ok 81 ok 82 ok 83 ok 84 ok 85 ok 86 ok 87 ok 88 ok 89 ok 90 ok 91 ok 92 ok 93 ok 94 ok 95 ok 96 ok 97 ok 98 ok 99 ok 100 ok 101 ok 102 ok 103 ok 104 ok 105 ok 106 ok 107 ok 108 ok 109 ok 110 ok 111 ok 112 ok 113 ok 114 ok 115 ok 116 ok 117 ok 118 ok 119 ok 120 ok 121 ok 122 ok 123 ok 124 ok 125 ok 126 ok 127 ok 128 ok 129 ok 130 ok 131 ok 132 ok 133 ok 134 ok 135 ok 136 ok 137 ok 138 ok 139 ok 140 ok 141 ok 142 ok 143 ok 144 ok 145 ok 146 ok 147 ok 148 ok 149 ok 150 ok 151 ok 152 ok 153 ok 154 ok 155 ok 156 ok 157 ok 158 ok 159 ok 160 ok 161 ok 162 ok 163 ok 164 ok 165 ok 166 ok 167 ok 168 ok 169 ok 170 ok 171 ok 172 ok 173 ok 174 ok 175 ok 176 ok 177 ok 178 ok 179 ok 180 ok 181 ok 182 ok 183 ok 184 ok 185 ok 186 ok 187 ok 188 ok 189 ok 190 ok 191 ok 192 ok 193 ok 194 ok 195 ok 196 ok 197 ok 198 ok 199 ok 200 ok 201 ok 202 ok 203 ok 204 ok 205 ok 206 ok 207 ok 208 ok 209 ok 210 ok 211 ok 212 ok 213 ok 214 ok 215 ok 216 ok 217 ok 218 ok 219 ok 220 ok 221 ok 222 ok 223 ok 224 ok 225 ok 226 ok 227 ok 228 ok 229 ok 230 ok 231 ok 232 ok 233 ok 234 ok 235 ok 236 ok 237 ok 238 ok 239 ok 240 ok 241 ok 242 ok 243 ok 244 ok 245 ok 246 ok 247 ok 248 ok 249 ok 250 ok 251 ok 252 ok 253 ok 254 ok 255 ok 256 ok 257 ok 258 ok 259 ok 260 ok 261 ok 262 ok 263 ok 264 ok 265 ok 266 ok 267 ok 268 ok All tests successful. Files=1, Tests=268, 1 wallclock secs ( 0.08 usr 0.02 sys + 1.38 cusr 0.18 csys = 1.66 CPU) Result: PASS create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a perl Build install --destdir /<>/debian/libbio-samtools-perl --create_packlist 0 Building Bio-SamTools make[1]: Entering directory '/<>/c_bin' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/<>/c_bin' Files found in blib/arch: installing files in blib/lib into architecture dependent library tree Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.30/auto/Bio/DB/Sam/Sam.so Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.30/auto/Bio/DB/Sam/Sam.bs Installing /<>/debian/libbio-samtools-perl/usr/bin/bam2bedgraph Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.30/Bio/DB/Sam.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.30/Bio/DB/Sam/SamToGBrowse.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.30/Bio/DB/Sam/Segment.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.30/Bio/DB/Sam/Constants.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.30/Bio/DB/Bam/ReadIterator.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.30/Bio/DB/Bam/Target.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.30/Bio/DB/Bam/AlignWrapper.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.30/Bio/DB/Bam/Pileup.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.30/Bio/DB/Bam/FetchIterator.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.30/Bio/DB/Bam/Alignment.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.30/Bio/DB/Bam/Query.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.30/Bio/DB/Bam/PileupWrapper.pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::Target.3pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Sam.3pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::Query.3pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::Alignment.3pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Sam::Constants.3pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::PileupWrapper.3pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::Pileup.3pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::AlignWrapper.3pm Installing /<>/debian/libbio-samtools-perl/usr/bin/genomeCoverageBed.pl Installing /<>/debian/libbio-samtools-perl/usr/bin/bamToGBrowse.pl Installing /<>/debian/libbio-samtools-perl/usr/bin/chrom_sizes.pl dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_lintian -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 144 INFO: pkgstriptranslations version 144 pkgstriptranslations: processing libbio-samtools-perl (in debian/libbio-samtools-perl); do_strip: , oemstrip: pkgstriptranslations: processing libbio-samtools-perl-dbgsym (in debian/.debhelper/libbio-samtools-perl/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libbio-samtools-perl/DEBIAN/control, package libbio-samtools-perl, directory debian/libbio-samtools-perl pkgstripfiles: Truncating usr/share/doc/libbio-samtools-perl/changelog.Debian.gz to topmost ten records pkgstripfiles: processing control file: debian/.debhelper/libbio-samtools-perl/dbgsym-root/DEBIAN/control, package libbio-samtools-perl-dbgsym, directory debian/.debhelper/libbio-samtools-perl/dbgsym-root dpkg-deb: building package 'libbio-samtools-perl-dbgsym' in 'debian/.debhelper/scratch-space/build-libbio-samtools-perl/libbio-samtools-perl-dbgsym_1.43-2build2_armhf.deb'. pkgstripfiles: Running PNG optimization (using 4 cpus) for package libbio-samtools-perl ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libbio-samtools-perl' in '../libbio-samtools-perl_1.43-2build2_armhf.deb'. Renaming libbio-samtools-perl-dbgsym_1.43-2build2_armhf.deb to libbio-samtools-perl-dbgsym_1.43-2build2_armhf.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../libbio-samtools-perl_1.43-2build2_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-08-22T10:17:19Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libbio-samtools-perl_1.43-2build2_armhf.changes: ------------------------------------------------ Format: 1.8 Date: Sat, 20 Aug 2022 16:15:00 +0200 Source: libbio-samtools-perl Binary: libbio-samtools-perl Architecture: armhf Version: 1.43-2build2 Distribution: focal-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Frank Heimes Description: libbio-samtools-perl - Perl interface to SamTools library for DNA sequencing Launchpad-Bugs-Fixed: 1983255 Changes: libbio-samtools-perl (1.43-2build2) focal; urgency=medium . * No-change rebuild for the samtools-legacy/libbam-dev update. (LP: #1983255) Checksums-Sha1: 7fde322a34e2a30cd5dcbab3192896fc7a797425 93200 libbio-samtools-perl-dbgsym_1.43-2build2_armhf.ddeb 83e10f1cb112edf1b4f406d505e436de6d8d8793 5651 libbio-samtools-perl_1.43-2build2_armhf.buildinfo 325f6b8db5e809366a978da44ecbe0fb5b8a141c 175064 libbio-samtools-perl_1.43-2build2_armhf.deb Checksums-Sha256: 57e83c2b986ce48bd1f2ff895f7469fb09b8f17a53d336ceb0ba96edc73a8c2f 93200 libbio-samtools-perl-dbgsym_1.43-2build2_armhf.ddeb c619d01be54f0c1cb2ce15a31d5d848ae3de2e569d2bf5f7cdbec0df2ced5bb2 5651 libbio-samtools-perl_1.43-2build2_armhf.buildinfo 8e1af8ea3ea64a4fb6c9455d9246dba97d3caaa2c5e682addc615c299b50e8ea 175064 libbio-samtools-perl_1.43-2build2_armhf.deb Files: 1ae1414394b9e59e5154508026a1a1a5 93200 debug optional libbio-samtools-perl-dbgsym_1.43-2build2_armhf.ddeb f1b3c139e779469fab105d14cd01dedf 5651 perl optional libbio-samtools-perl_1.43-2build2_armhf.buildinfo 3563a207b541646555eb1f8e66eb4539 175064 perl optional libbio-samtools-perl_1.43-2build2_armhf.deb /<>/libbio-samtools-perl_1.43-2build2_armhf.changes.new could not be renamed to /<>/libbio-samtools-perl_1.43-2build2_armhf.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: libbio-samtools-perl Binary: libbio-samtools-perl Architecture: armhf Version: 1.43-2build2 Checksums-Md5: 1ae1414394b9e59e5154508026a1a1a5 93200 libbio-samtools-perl-dbgsym_1.43-2build2_armhf.ddeb 3563a207b541646555eb1f8e66eb4539 175064 libbio-samtools-perl_1.43-2build2_armhf.deb Checksums-Sha1: 7fde322a34e2a30cd5dcbab3192896fc7a797425 93200 libbio-samtools-perl-dbgsym_1.43-2build2_armhf.ddeb 325f6b8db5e809366a978da44ecbe0fb5b8a141c 175064 libbio-samtools-perl_1.43-2build2_armhf.deb Checksums-Sha256: 57e83c2b986ce48bd1f2ff895f7469fb09b8f17a53d336ceb0ba96edc73a8c2f 93200 libbio-samtools-perl-dbgsym_1.43-2build2_armhf.ddeb 8e1af8ea3ea64a4fb6c9455d9246dba97d3caaa2c5e682addc615c299b50e8ea 175064 libbio-samtools-perl_1.43-2build2_armhf.deb Build-Origin: Ubuntu Build-Architecture: armhf Build-Date: Mon, 22 Aug 2022 10:17:18 +0000 Build-Path: /<> Build-Tainted-By: usr-local-has-programs Installed-Build-Depends: autoconf (= 2.69-11.1), automake (= 1:1.16.1-4ubuntu6), autopoint (= 0.19.8.1-10build1), autotools-dev (= 20180224.1), base-files (= 11ubuntu5.5), base-passwd (= 3.5.47), bash (= 5.0-6ubuntu1.2), binutils (= 2.34-6ubuntu1.3), binutils-arm-linux-gnueabihf (= 2.34-6ubuntu1.3), binutils-common (= 2.34-6ubuntu1.3), bsdmainutils (= 11.1.2ubuntu3), bsdutils (= 1:2.34-0.1ubuntu9.3), build-essential (= 12.8ubuntu1.1), bzip2 (= 1.0.8-2), coreutils (= 8.30-3ubuntu2), cpp (= 4:9.3.0-1ubuntu2), cpp-9 (= 9.4.0-1ubuntu1~20.04.1), dash (= 0.5.10.2-6), debconf (= 1.5.73), debhelper (= 12.10ubuntu1), debianutils (= 4.9.1), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.7.0-1), diffutils (= 1:3.7-3), dpkg (= 1.19.7ubuntu3.2), dpkg-dev (= 1.19.7ubuntu3.2), dwz (= 0.13-5), file (= 1:5.38-4), findutils (= 4.7.0-1ubuntu1), g++ (= 4:9.3.0-1ubuntu2), g++-9 (= 9.4.0-1ubuntu1~20.04.1), gcc (= 4:9.3.0-1ubuntu2), gcc-10-base (= 10.3.0-1ubuntu1~20.04), gcc-9 (= 9.4.0-1ubuntu1~20.04.1), gcc-9-base (= 9.4.0-1ubuntu1~20.04.1), gettext (= 0.19.8.1-10build1), gettext-base (= 0.19.8.1-10build1), grep (= 3.4-1), groff-base (= 1.22.4-4build1), gzip (= 1.10-0ubuntu4.1), hostname (= 3.23), init-system-helpers (= 1.57), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-6), libarchive-zip-perl (= 1.67-2), libasan5 (= 9.4.0-1ubuntu1~20.04.1), libatomic1 (= 10.3.0-1ubuntu1~20.04), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-2ubuntu6), libaudit1 (= 1:2.8.5-2ubuntu6), libbam-dev (= 0.1.19-4ubuntu0.1), libbinutils (= 2.34-6ubuntu1.3), libbio-perl-perl (= 1.7.7-1), libblkid1 (= 2.34-0.1ubuntu9.3), libbsd0 (= 0.10.0-1), libbz2-1.0 (= 1.0.8-2), libc-bin (= 2.31-0ubuntu9.9), libc-dev-bin (= 2.31-0ubuntu9.9), libc6 (= 2.31-0ubuntu9.9), libc6-dev (= 2.31-0ubuntu9.9), libcap-ng0 (= 0.7.9-2.1build1), libcc1-0 (= 10.3.0-1ubuntu1~20.04), libcroco3 (= 0.6.13-1), libcrypt-dev (= 1:4.4.10-10ubuntu4), libcrypt1 (= 1:4.4.10-10ubuntu4), libctf-nobfd0 (= 2.34-6ubuntu1.3), libctf0 (= 2.34-6ubuntu1.3), libdata-stag-perl (= 0.14-2), libdb5.3 (= 5.3.28+dfsg1-0.6ubuntu2), libdebconfclient0 (= 0.251ubuntu1), libdebhelper-perl (= 12.10ubuntu1), libdpkg-perl (= 1.19.7ubuntu3.2), libelf1 (= 0.176-1.1build1), libffi7 (= 3.3-4), libfile-stripnondeterminism-perl (= 1.7.0-1), libgcc-9-dev (= 9.4.0-1ubuntu1~20.04.1), libgcc-s1 (= 10.3.0-1ubuntu1~20.04), libgcrypt20 (= 1.8.5-5ubuntu1.1), libgdbm-compat4 (= 1.18.1-5), libgdbm6 (= 1.18.1-5), libglib2.0-0 (= 2.64.6-1~ubuntu20.04.4), libgmp10 (= 2:6.2.0+dfsg-4), libgomp1 (= 10.3.0-1ubuntu1~20.04), libgpg-error0 (= 1.37-1), libicu66 (= 66.1-2ubuntu2.1), libio-string-perl (= 1.08-3), libisl22 (= 0.22.1-1), liblz4-1 (= 1.9.2-2ubuntu0.20.04.1), liblzma5 (= 5.2.4-1ubuntu1.1), libmagic-mgc (= 1:5.38-4), libmagic1 (= 1:5.38-4), libmodule-build-perl (= 0.423100-1), libmount1 (= 2.34-0.1ubuntu9.3), libmpc3 (= 1.1.0-1), libmpfr6 (= 4.0.2-1), libpam-modules (= 1.3.1-5ubuntu4.3), libpam-modules-bin (= 1.3.1-5ubuntu4.3), libpam-runtime (= 1.3.1-5ubuntu4.3), libpam0g (= 1.3.1-5ubuntu4.3), libpcre2-8-0 (= 10.34-7), libpcre3 (= 2:8.39-12ubuntu0.1), libperl5.30 (= 5.30.0-9ubuntu0.2), libpipeline1 (= 1.5.2-2build1), libseccomp2 (= 2.5.1-1ubuntu1~20.04.2), libselinux1 (= 3.0-1build2), libsigsegv2 (= 2.12-2), libsmartcols1 (= 2.34-0.1ubuntu9.3), libstdc++-9-dev (= 9.4.0-1ubuntu1~20.04.1), libstdc++6 (= 10.3.0-1ubuntu1~20.04), libsub-override-perl (= 0.09-2), libsystemd0 (= 245.4-4ubuntu3.17), libtinfo6 (= 6.2-0ubuntu2), libtool (= 2.4.6-14), libubsan1 (= 10.3.0-1ubuntu1~20.04), libuchardet0 (= 0.0.6-3build1), libudev1 (= 245.4-4ubuntu3.17), libunistring2 (= 0.9.10-2), libuuid1 (= 2.34-0.1ubuntu9.3), libxml2 (= 2.9.10+dfsg-5ubuntu0.20.04.4), libzstd1 (= 1.4.4+dfsg-3ubuntu0.1), linux-libc-dev (= 5.4.0-125.141), login (= 1:4.8.1-1ubuntu5.20.04.2), lsb-base (= 11.1.0ubuntu2), m4 (= 1.4.18-4), make (= 4.2.1-1.2), man-db (= 2.9.1-1), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2-0ubuntu2), ncurses-bin (= 6.2-0ubuntu2), patch (= 2.7.6-6), perl (= 5.30.0-9ubuntu0.2), perl-base (= 5.30.0-9ubuntu0.2), perl-modules-5.30 (= 5.30.0-9ubuntu0.2), po-debconf (= 1.0.21), sed (= 4.7-1), sensible-utils (= 0.0.12+nmu1), sysvinit-utils (= 2.96-2.1ubuntu1), tar (= 1.30+dfsg-7ubuntu0.20.04.2), tzdata (= 2022a-0ubuntu0.20.04), util-linux (= 2.34-0.1ubuntu9.3), xz-utils (= 5.2.4-1ubuntu1.1), zlib1g (= 1:1.2.11.dfsg-2ubuntu1.4), zlib1g-dev (= 1:1.2.11.dfsg-2ubuntu1.4) Environment: DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1661004900" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libbio-samtools-perl_1.43-2build2_armhf.deb ------------------------------------------- new Debian package, version 2.0. size 175064 bytes: control archive=1768 bytes. 1079 bytes, 20 lines control 2493 bytes, 29 lines md5sums Package: libbio-samtools-perl Version: 1.43-2build2 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Perl Group Installed-Size: 484 Depends: perl (>= 5.30.0-9ubuntu0.2), perlapi-5.30.0, libc6 (>= 2.15), zlib1g (>= 1:1.2.3.3), libbio-perl-perl Enhances: gbrowse, samtools Section: perl Priority: optional Homepage: https://metacpan.org/release/Bio-SamTools Description: Perl interface to SamTools library for DNA sequencing Bio::SamTools provides a Perl interface to the libbam library for indexed and unindexed SAM/BAM sequence alignment databases. It provides support for retrieving information on individual alignments, read pairs, and alignment coverage information across large regions. It also provides callback functionality for calling SNPs and performing other base-by-base functions. Most operations are compatible with the BioPerl Bio::SeqFeatureI interface, allowing BAM files to be used as a backend to the GBrowse genome browser application. drwxr-xr-x root/root 0 2022-08-20 14:15 ./ drwxr-xr-x root/root 0 2022-08-20 14:15 ./usr/ drwxr-xr-x root/root 0 2022-08-20 14:15 ./usr/bin/ -rwxr-xr-x root/root 92752 2022-08-20 14:15 ./usr/bin/bam2bedgraph -rwxr-xr-x root/root 2087 2022-08-20 14:15 ./usr/bin/bamToGBrowse.pl -rwxr-xr-x root/root 331 2022-08-20 14:15 ./usr/bin/chrom_sizes.pl -rwxr-xr-x root/root 283 2022-08-20 14:15 ./usr/bin/genomeCoverageBed.pl drwxr-xr-x root/root 0 2022-08-20 14:15 ./usr/lib/ drwxr-xr-x root/root 0 2022-08-20 14:15 ./usr/lib/arm-linux-gnueabihf/ drwxr-xr-x root/root 0 2022-08-20 14:15 ./usr/lib/arm-linux-gnueabihf/perl5/ drwxr-xr-x root/root 0 2022-08-20 14:15 ./usr/lib/arm-linux-gnueabihf/perl5/5.30/ drwxr-xr-x root/root 0 2022-08-20 14:15 ./usr/lib/arm-linux-gnueabihf/perl5/5.30/Bio/ drwxr-xr-x root/root 0 2022-08-20 14:15 ./usr/lib/arm-linux-gnueabihf/perl5/5.30/Bio/DB/ drwxr-xr-x root/root 0 2022-08-20 14:15 ./usr/lib/arm-linux-gnueabihf/perl5/5.30/Bio/DB/Bam/ -rw-r--r-- root/root 11925 2022-08-20 14:15 ./usr/lib/arm-linux-gnueabihf/perl5/5.30/Bio/DB/Bam/AlignWrapper.pm -rw-r--r-- root/root 17627 2022-08-20 14:15 ./usr/lib/arm-linux-gnueabihf/perl5/5.30/Bio/DB/Bam/Alignment.pm -rw-r--r-- root/root 335 2022-08-20 14:15 ./usr/lib/arm-linux-gnueabihf/perl5/5.30/Bio/DB/Bam/FetchIterator.pm -rw-r--r-- root/root 2404 2022-08-20 14:15 ./usr/lib/arm-linux-gnueabihf/perl5/5.30/Bio/DB/Bam/Pileup.pm -rw-r--r-- root/root 1891 2022-08-20 14:15 ./usr/lib/arm-linux-gnueabihf/perl5/5.30/Bio/DB/Bam/PileupWrapper.pm -rw-r--r-- root/root 4636 2022-08-20 14:15 ./usr/lib/arm-linux-gnueabihf/perl5/5.30/Bio/DB/Bam/Query.pm -rw-r--r-- root/root 402 2022-08-20 14:15 ./usr/lib/arm-linux-gnueabihf/perl5/5.30/Bio/DB/Bam/ReadIterator.pm -rw-r--r-- root/root 1046 2022-08-20 14:15 ./usr/lib/arm-linux-gnueabihf/perl5/5.30/Bio/DB/Bam/Target.pm -rw-r--r-- root/root 77823 2022-08-20 14:15 ./usr/lib/arm-linux-gnueabihf/perl5/5.30/Bio/DB/Sam.pm drwxr-xr-x root/root 0 2022-08-20 14:15 ./usr/lib/arm-linux-gnueabihf/perl5/5.30/Bio/DB/Sam/ -rw-r--r-- root/root 2296 2022-08-20 14:15 ./usr/lib/arm-linux-gnueabihf/perl5/5.30/Bio/DB/Sam/Constants.pm -rw-r--r-- root/root 12026 2022-08-20 14:15 ./usr/lib/arm-linux-gnueabihf/perl5/5.30/Bio/DB/Sam/SamToGBrowse.pm -rw-r--r-- root/root 2284 2022-08-20 14:15 ./usr/lib/arm-linux-gnueabihf/perl5/5.30/Bio/DB/Sam/Segment.pm drwxr-xr-x root/root 0 2022-08-20 14:15 ./usr/lib/arm-linux-gnueabihf/perl5/5.30/auto/ drwxr-xr-x root/root 0 2022-08-20 14:15 ./usr/lib/arm-linux-gnueabihf/perl5/5.30/auto/Bio/ drwxr-xr-x root/root 0 2022-08-20 14:15 ./usr/lib/arm-linux-gnueabihf/perl5/5.30/auto/Bio/DB/ drwxr-xr-x root/root 0 2022-08-20 14:15 ./usr/lib/arm-linux-gnueabihf/perl5/5.30/auto/Bio/DB/Sam/ -rw-r--r-- root/root 0 2022-08-20 14:15 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Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build Type: any Build-Space: 3320 Build-Time: 18 Distribution: focal-proposed Host Architecture: armhf Install-Time: 13 Job: libbio-samtools-perl_1.43-2build2.dsc Machine Architecture: arm64 Package: libbio-samtools-perl Package-Time: 33 Source-Version: 1.43-2build2 Space: 3320 Status: successful Version: 1.43-2build2 -------------------------------------------------------------------------------- Finished at 2022-08-22T10:17:19Z Build needed 00:00:33, 3320k disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=focal --arch=armhf PACKAGEBUILD-24303485 Scanning for processes to kill in build PACKAGEBUILD-24303485