libbio-db-gff-perl 1.7.4-1 source package in Ubuntu
Changelog
libbio-db-gff-perl (1.7.4-1) unstable; urgency=medium * New upstream version * Standards-Version: 4.4.1 -- Michael R. Crusoe <email address hidden> Mon, 13 Jan 2020 13:16:18 +0100
Upload details
- Uploaded by:
- Michael R. Crusoe
- Uploaded to:
- Sid
- Original maintainer:
- Michael R. Crusoe
- Architectures:
- all
- Section:
- misc
- Urgency:
- Medium Urgency
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| libbio-db-gff-perl_1.7.4-1.dsc | 2.1 KiB | 6f8e8c6fa15c789f64195e7e79dd33bdf67baa7ea1cf0ec0a74d0d13b21a5e7d |
| libbio-db-gff-perl_1.7.4.orig.tar.gz | 274.9 KiB | 9becc9df6f6b7c5174aa0b818e7c6a0f2feb92aacf3ac2bd94071edc65b81267 |
| libbio-db-gff-perl_1.7.4-1.debian.tar.xz | 1.9 KiB | 9fa118d284e408097733127e7733f15fcefd19cb40f1297d43fdf3c435a8ffc4 |
Available diffs
- diff from 1.7.3-2 to 1.7.4-1 (5.2 KiB)
No changes file available.
Binary packages built by this source
- libbio-db-gff-perl: Storage and retrieval of sequence annotation data
Bio::DB::GFF provides fast indexed access to a sequence annotation database.
It supports multiple database types (ACeDB, relational), and multiple schemas
through a system of adaptors and aggregators.
.
The following operations are supported by this module:
.
- retrieving a segment of sequence based on the ID of a landmark
.
- retrieving the DNA from that segment
.
- finding all annotations that overlap with the segment
.
- finding all annotations that are completely contained within the
segment
.
- retrieving all annotations of a particular type, either within a
segment, or globally
.
- conversion from absolute to relative coordinates and back again,
using any arbitrary landmark for the relative coordinates
.
- using a sequence segment to create new segments based on relative
offsets
