Ubuntu
last-align package

last-align 393-1 source package in Ubuntu

Changelog

last-align (393-1) unstable; urgency=medium


  * New upstream release
  * cme fix dpkg-control
  * debian/rules: Adapt help2man to the fact that two scripts were
    deleted from upstream source (no idea how to write manpages for the
    new parallel-* scripts)
  * Adapt doc-base control script (text file might be uncompressed)

 -- Andreas Tille <email address hidden>  Tue, 28 Jan 2014 17:57:09 +0100

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any
Section:
science
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Trusty release universe science

Downloads

File Size SHA-256 Checksum
last-align_393-1.dsc 1.3 KiB 9da9f95a1e5f1c8db716c3f01926b5d44a4c12dcac4eb4103f808392a97e4dcc
last-align_393.orig.tar.xz 261.9 KiB d6a7de58d59de4836f15e905bcb9bc84305ce9fbd9afcc974800b63dbfb23267
last-align_393-1.debian.tar.xz 7.4 KiB feb16e23c44b1a78e62546c26f6225b3da07c1e3efcd438c894ec25ac2c2240c

Available diffs

No changes file available.

Binary packages built by this source

last-align: genome-scale comparison of biological sequences

 LAST is software for comparing and aligning sequences, typically DNA or
 protein sequences. LAST is similar to BLAST, but it copes better with very
 large amounts of sequence data. Here are two things LAST is good at:
 .
  * Comparing large (e.g. mammalian) genomes.
  * Mapping lots of sequence tags onto a genome.
 .
 The main technical innovation is that LAST finds initial matches based on
 their multiplicity, instead of using a fixed size (e.g. BLAST uses 10-mers).
 This allows one to map tags to genomes without repeat-masking, without becoming
 overwhelmed by repetitive hits. To find these variable-sized matches, it uses
 a suffix array (inspired by Vmatch). To achieve high sensitivity, it uses a
 discontiguous suffix array, analogous to spaced seeds.