last-align 199-1 source package in Ubuntu
Changelog
last-align (199-1) unstable; urgency=low
[ Charles Plessy ]
* Summarise LAST license in debian/copyright header.
[ Andreas Tille ]
* New upstream version
Closes: #667939
* debian/rules:
- switch from cdbs to dh
- add help2man call for lastex
* debian/install:
- removed to use upstream install target (which also installs
lastex)
* debian/copyright: Make Source field more generic
-- Andreas Tille <email address hidden> Mon, 07 May 2012 13:28:25 +0200
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any
- Section:
- science
- Urgency:
- Low Urgency
See full publishing history Publishing
| Series | Published | Component | Section |
|---|
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| last-align_199-1.dsc | 1.4 KiB | e6dffa73eecf7576a081549c5c00e5ae4ce9c315a9bc3316acf83d0a351bb659 |
| last-align_199.orig.tar.gz | 318.8 KiB | 0db7e179fd2e5dbe4ebdf4d82cfb14ca9bb255af4484622e4bcba65417a9c42a |
| last-align_199-1.debian.tar.gz | 7.5 KiB | c51340d8f7ecc7912af0b3e0138d4ed7bad4b27d92806065efd5dafc794e53f6 |
Available diffs
- diff from 198-1 to 199-1 (2.9 KiB)
No changes file available.
Binary packages built by this source
- last-align: genome-scale comparison of biological sequences
LAST is software for comparing and aligning sequences, typically DNA or
protein sequences. LAST is similar to BLAST, but it copes better with very
large amounts of sequence data. Here are two things LAST is good at:
.
* Comparing large (e.g. mammalian) genomes.
* Mapping lots of sequence tags onto a genome.
.
The main technical innovation is that LAST finds initial matches based on
their multiplicity, instead of using a fixed size (e.g. BLAST uses 10-mers).
This allows one to map tags to genomes without repeat-masking, without becoming
overwhelmed by repetitive hits. To find these variable-sized matches, it uses
a suffix array (inspired by Vmatch). To achieve high sensitivity, it uses a
discontiguous suffix array, analogous to spaced seeds.
