Please sync last-align 37-1 (universe) from Debian unstable (main).
Affects | Status | Importance | Assigned to | Milestone | |
---|---|---|---|---|---|
last-align (Ubuntu) |
Fix Released
|
Wishlist
|
Unassigned |
Bug Description
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affects ubuntu/last-align
status new
importance wishlist
subscribe ubuntu-
Please sync last-align 37-1 (universe) from Debian unstable (main).
Please sync the latest version from debian as they have updated their
package to the latest upstream version.
Changelog since current jaunty version 31-1:
last-align (37-1) unstable; urgency=low
* New upstream release.
- Updated the documentation, including a table of optimal spaced seeds.
- Made lastdb bucket-making code slightly simpler & faster.
- Enabled reading & writing of huge files (at least on one system with
Linux-
- Made lastdb radix sort a bit faster, with the oracle array trick.
- Allowed the mismatch score to be zero, due to a request.
- Made gapped extension faster for short sequences (e.g. tag mapping).
- Bugfix: the sequence names weren't printed correctly for
match-
- Fixed compiler warnings with gcc 4.3.
-- Charles Plessy <email address hidden> Sun, 28 Dec 2008 12:49:05 +0100
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ACKed.