https://launchpad.net/ubuntu/+source/kmc/2.3+dfsg-6/+build/15114657 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux bos02-arm64-016 4.4.0-130-generic #156-Ubuntu SMP Thu Jun 14 08:52:48 UTC 2018 aarch64 Buildd toolchain package versions: launchpad-buildd_163 python-lpbuildd_163 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.4 dpkg-dev_1.18.4ubuntu1.4 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 12 Jul 05:11:34 ntpdate[1873]: adjust time server 10.211.37.1 offset -0.062050 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=cosmic --arch=armhf PACKAGEBUILD-15114657 /home/buildd/filecache-default/fc6c56f66744d62233b3c844f67cb7d83d839bbc Creating target for build PACKAGEBUILD-15114657 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=cosmic --arch=armhf PACKAGEBUILD-15114657 Starting target for build PACKAGEBUILD-15114657 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=cosmic --arch=armhf PACKAGEBUILD-15114657 'deb http://ftpmaster.internal/ubuntu cosmic main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-security main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-updates main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-15114657 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=cosmic --arch=armhf PACKAGEBUILD-15114657 Updating target for build PACKAGEBUILD-15114657 Get:1 http://ftpmaster.internal/ubuntu cosmic InRelease [242 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic-proposed InRelease [92.5 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main armhf Packages [972 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main Translation-en [516 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/universe armhf Packages [8403 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/universe Translation-en [5019 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf Packages [47.2 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic-proposed/main Translation-en [29.6 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic-proposed/universe armhf Packages [187 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic-proposed/universe Translation-en [108 kB] Fetched 15.7 MB in 7s (2294 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libargon2-0 libncursesw5 libprocps6 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libargon2-1 libncurses6 libncursesw6 libprocps7 libtinfo6 The following packages will be upgraded: adduser apt base-files base-passwd bash binutils binutils-arm-linux-gnueabihf binutils-common bsdutils build-essential cpp cpp-7 debconf debianutils dpkg dpkg-dev e2fslibs e2fsprogs fdisk g++ g++-7 gcc gcc-7 gcc-7-base gcc-8-base gpg gpg-agent gpgconf gpgv libapparmor1 libapt-pkg5.0 libargon2-0 libasan4 libatomic1 libaudit-common libaudit1 libbinutils libblkid1 libcap-ng0 libcc1-0 libcilkrts5 libcom-err2 libcomerr2 libcryptsetup12 libdpkg-perl libext2fs2 libfdisk1 libgcc-7-dev libgcc1 libgcrypt20 libgmp10 libgomp1 libgpg-error0 libkmod2 liblz4-1 libmount1 libncurses5 libncursesw5 libnpth0 libp11-kit0 libperl5.26 libpng16-16 libreadline7 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libslang2 libsmartcols1 libsqlite3-0 libss2 libssl1.1 libstdc++-7-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo5 libubsan0 libudev1 libusb-0.1-4 libuuid1 linux-libc-dev mount ncurses-base ncurses-bin openssl perl perl-base perl-modules-5.26 pinentry-curses pkgbinarymangler procps readline-common sed systemd systemd-sysv tar tzdata util-linux 100 upgraded, 5 newly installed, 0 to remove and 0 not upgraded. Need to get 47.9 MB of archives. After this operation, 1746 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu cosmic/main armhf base-files armhf 10.1ubuntu4 [58.0 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic/main armhf libtinfo6 armhf 6.1+20180210-4ubuntu1 [71.2 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic/main armhf debianutils armhf 4.8.6 [84.4 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic/main armhf bash armhf 4.4.18-2ubuntu2 [552 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main armhf bsdutils armhf 1:2.32-0.1ubuntu1 [55.5 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main armhf tar armhf 1.30+dfsg-2 [218 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/main armhf dpkg armhf 1.19.0.5ubuntu3 [1096 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/main armhf libext2fs2 armhf 1.44.3-1 [145 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic/main armhf e2fsprogs armhf 1.44.3-1 [375 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic/main armhf ncurses-bin armhf 6.1+20180210-4ubuntu1 [155 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic/main armhf perl-modules-5.26 all 5.26.2-6 [2762 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic/main armhf libperl5.26 armhf 5.26.2-6 [2870 kB] Get:13 http://ftpmaster.internal/ubuntu cosmic/main armhf perl armhf 5.26.2-6 [202 kB] Get:14 http://ftpmaster.internal/ubuntu cosmic/main armhf perl-base armhf 5.26.2-6 [1291 kB] Get:15 http://ftpmaster.internal/ubuntu cosmic/main armhf sed armhf 4.5-1 [177 kB] Get:16 http://ftpmaster.internal/ubuntu cosmic/main armhf libuuid1 armhf 2.32-0.1ubuntu1 [19.2 kB] Get:17 http://ftpmaster.internal/ubuntu cosmic/main armhf libblkid1 armhf 2.32-0.1ubuntu1 [115 kB] Get:18 http://ftpmaster.internal/ubuntu cosmic/main armhf libfdisk1 armhf 2.32-0.1ubuntu1 [155 kB] Get:19 http://ftpmaster.internal/ubuntu cosmic/main armhf libncursesw6 armhf 6.1+20180210-4ubuntu1 [104 kB] Get:20 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf libselinux1 armhf 2.8-1build1 [59.2 kB] Get:21 http://ftpmaster.internal/ubuntu cosmic/main armhf libmount1 armhf 2.32-0.1ubuntu1 [125 kB] Get:22 http://ftpmaster.internal/ubuntu cosmic/main armhf libsmartcols1 armhf 2.32-0.1ubuntu1 [76.2 kB] Get:23 http://ftpmaster.internal/ubuntu cosmic/main armhf fdisk armhf 2.32-0.1ubuntu1 [98.7 kB] Get:24 http://ftpmaster.internal/ubuntu cosmic/main armhf util-linux armhf 2.32-0.1ubuntu1 [858 kB] Get:25 http://ftpmaster.internal/ubuntu cosmic/main armhf base-passwd armhf 3.5.45 [46.0 kB] Get:26 http://ftpmaster.internal/ubuntu cosmic/main armhf ncurses-base all 6.1+20180210-4ubuntu1 [18.4 kB] Get:27 http://ftpmaster.internal/ubuntu cosmic/main armhf libgomp1 armhf 8.1.0-9ubuntu1 [66.6 kB] Get:28 http://ftpmaster.internal/ubuntu cosmic/main armhf gcc-8-base armhf 8.1.0-9ubuntu1 [18.9 kB] Get:29 http://ftpmaster.internal/ubuntu cosmic/main armhf libgcc1 armhf 1:8.1.0-9ubuntu1 [37.1 kB] Get:30 http://ftpmaster.internal/ubuntu cosmic/main armhf libcc1-0 armhf 8.1.0-9ubuntu1 [32.7 kB] Get:31 http://ftpmaster.internal/ubuntu cosmic/main armhf libatomic1 armhf 8.1.0-9ubuntu1 [7052 B] Get:32 http://ftpmaster.internal/ubuntu cosmic/main armhf libstdc++6 armhf 8.1.0-9ubuntu1 [350 kB] Get:33 http://ftpmaster.internal/ubuntu cosmic/main armhf liblz4-1 armhf 1.8.2-1ubuntu1 [76.1 kB] Get:34 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf libudev1 armhf 238-5ubuntu2 [50.7 kB] Get:35 http://ftpmaster.internal/ubuntu cosmic/main armhf libapt-pkg5.0 armhf 1.7.0~alpha2 [731 kB] Get:36 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf debconf all 1.5.67 [124 kB] Get:37 http://ftpmaster.internal/ubuntu cosmic/main armhf adduser all 3.117ubuntu1 [163 kB] Get:38 http://ftpmaster.internal/ubuntu cosmic/main armhf libgpg-error0 armhf 1.31-1 [48.5 kB] Get:39 http://ftpmaster.internal/ubuntu cosmic/main armhf libgcrypt20 armhf 1.8.3-1ubuntu1 [364 kB] Get:40 http://ftpmaster.internal/ubuntu cosmic/main armhf gpgv armhf 2.2.8-1ubuntu1 [167 kB] Get:41 http://ftpmaster.internal/ubuntu cosmic/main armhf libseccomp2 armhf 2.3.3-3ubuntu1 [30.4 kB] Get:42 http://ftpmaster.internal/ubuntu cosmic/main armhf apt armhf 1.7.0~alpha2 [1127 kB] Get:43 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf libapparmor1 armhf 2.12-4ubuntu6 [27.1 kB] Get:44 http://ftpmaster.internal/ubuntu cosmic/main armhf libaudit-common all 1:2.8.3-1ubuntu2 [4064 B] Get:45 http://ftpmaster.internal/ubuntu cosmic/main armhf libcap-ng0 armhf 0.7.9-1 [10.1 kB] Get:46 http://ftpmaster.internal/ubuntu cosmic/main armhf libaudit1 armhf 1:2.8.3-1ubuntu2 [35.5 kB] Get:47 http://ftpmaster.internal/ubuntu cosmic/main armhf libargon2-1 armhf 0~20171227-0.1 [20.7 kB] Get:48 http://ftpmaster.internal/ubuntu cosmic/main armhf libcryptsetup12 armhf 2:2.0.2-1ubuntu3 [119 kB] Get:49 http://ftpmaster.internal/ubuntu cosmic/main armhf libkmod2 armhf 25-1ubuntu1 [35.7 kB] Get:50 http://ftpmaster.internal/ubuntu cosmic/main armhf mount armhf 2.32-0.1ubuntu1 [97.4 kB] Get:51 http://ftpmaster.internal/ubuntu cosmic/main armhf libncurses6 armhf 6.1+20180210-4ubuntu1 [78.5 kB] Get:52 http://ftpmaster.internal/ubuntu cosmic/main armhf libprocps7 armhf 2:3.3.15-2ubuntu1 [29.6 kB] Get:53 http://ftpmaster.internal/ubuntu cosmic/main armhf procps armhf 2:3.3.15-2ubuntu1 [219 kB] Get:54 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf systemd armhf 238-5ubuntu2 [2783 kB] Get:55 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf libsystemd0 armhf 238-5ubuntu2 [189 kB] Get:56 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf systemd-sysv armhf 238-5ubuntu2 [13.7 kB] Get:57 http://ftpmaster.internal/ubuntu cosmic/main armhf libcom-err2 armhf 1.44.3-1 [8356 B] Get:58 http://ftpmaster.internal/ubuntu cosmic/main armhf libsepol1 armhf 2.8-1 [219 kB] Get:59 http://ftpmaster.internal/ubuntu cosmic/main armhf libsemanage-common all 2.8-1build1 [7000 B] Get:60 http://ftpmaster.internal/ubuntu cosmic/main armhf libsemanage1 armhf 2.8-1build1 [73.0 kB] Get:61 http://ftpmaster.internal/ubuntu cosmic/main armhf libss2 armhf 1.44.3-1 [9396 B] Get:62 http://ftpmaster.internal/ubuntu cosmic/main armhf libgmp10 armhf 2:6.1.2+dfsg-3 [182 kB] Get:63 http://ftpmaster.internal/ubuntu cosmic/main armhf libp11-kit0 armhf 0.23.12-2 [163 kB] Get:64 http://ftpmaster.internal/ubuntu cosmic/main armhf libtasn1-6 armhf 4.13-3 [31.1 kB] Get:65 http://ftpmaster.internal/ubuntu cosmic/main armhf libncurses5 armhf 6.1+20180210-4ubuntu1 [74.9 kB] Get:66 http://ftpmaster.internal/ubuntu cosmic/main armhf libncursesw5 armhf 6.1+20180210-4ubuntu1 [95.3 kB] Get:67 http://ftpmaster.internal/ubuntu cosmic/main armhf libtinfo5 armhf 6.1+20180210-4ubuntu1 [67.6 kB] Get:68 http://ftpmaster.internal/ubuntu cosmic/main armhf libargon2-0 armhf 0~20171227-0.1 [4536 B] Get:69 http://ftpmaster.internal/ubuntu cosmic/main armhf readline-common all 7.0-5 [52.2 kB] Get:70 http://ftpmaster.internal/ubuntu cosmic/main armhf libreadline7 armhf 7.0-5 [102 kB] Get:71 http://ftpmaster.internal/ubuntu cosmic/main armhf libslang2 armhf 2.3.2-1ubuntu1 [383 kB] Get:72 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf libsqlite3-0 armhf 3.24.0-1 [429 kB] Get:73 http://ftpmaster.internal/ubuntu cosmic/main armhf libssl1.1 armhf 1.1.0g-2ubuntu5 [912 kB] Get:74 http://ftpmaster.internal/ubuntu cosmic/main armhf openssl armhf 1.1.0g-2ubuntu5 [510 kB] Get:75 http://ftpmaster.internal/ubuntu cosmic/main armhf tzdata all 2018e-1 [188 kB] Get:76 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf libpng16-16 armhf 1.6.34-2 [159 kB] Get:77 http://ftpmaster.internal/ubuntu cosmic/main armhf libbinutils armhf 2.30-22ubuntu1 [309 kB] Get:78 http://ftpmaster.internal/ubuntu cosmic/main armhf binutils-common armhf 2.30-22ubuntu1 [193 kB] Get:79 http://ftpmaster.internal/ubuntu cosmic/main armhf binutils armhf 2.30-22ubuntu1 [3352 B] Get:80 http://ftpmaster.internal/ubuntu cosmic/main armhf binutils-arm-linux-gnueabihf armhf 2.30-22ubuntu1 [2175 kB] Get:81 http://ftpmaster.internal/ubuntu cosmic/main armhf libasan4 armhf 7.3.0-24ubuntu1 [328 kB] Get:82 http://ftpmaster.internal/ubuntu cosmic/main armhf libubsan0 armhf 7.3.0-24ubuntu1 [108 kB] Get:83 http://ftpmaster.internal/ubuntu cosmic/main armhf libcilkrts5 armhf 7.3.0-24ubuntu1 [35.9 kB] Get:84 http://ftpmaster.internal/ubuntu cosmic/main armhf g++-7 armhf 7.3.0-24ubuntu1 [6051 kB] Get:85 http://ftpmaster.internal/ubuntu cosmic/main armhf gcc-7 armhf 7.3.0-24ubuntu1 [5952 kB] Get:86 http://ftpmaster.internal/ubuntu cosmic/main armhf libstdc++-7-dev armhf 7.3.0-24ubuntu1 [1537 kB] Get:87 http://ftpmaster.internal/ubuntu cosmic/main armhf libgcc-7-dev armhf 7.3.0-24ubuntu1 [706 kB] Get:88 http://ftpmaster.internal/ubuntu cosmic/main armhf cpp-7 armhf 7.3.0-24ubuntu1 [5294 kB] Get:89 http://ftpmaster.internal/ubuntu cosmic/main armhf gcc-7-base armhf 7.3.0-24ubuntu1 [19.0 kB] Get:90 http://ftpmaster.internal/ubuntu cosmic/main armhf cpp armhf 4:7.3.0-3ubuntu3 [27.6 kB] Get:91 http://ftpmaster.internal/ubuntu cosmic/main armhf gcc armhf 4:7.3.0-3ubuntu3 [5228 B] Get:92 http://ftpmaster.internal/ubuntu cosmic/main armhf g++ armhf 4:7.3.0-3ubuntu3 [1600 B] Get:93 http://ftpmaster.internal/ubuntu cosmic/main armhf dpkg-dev all 1.19.0.5ubuntu3 [608 kB] Get:94 http://ftpmaster.internal/ubuntu cosmic/main armhf libdpkg-perl all 1.19.0.5ubuntu3 [211 kB] Get:95 http://ftpmaster.internal/ubuntu cosmic/main armhf build-essential armhf 12.5ubuntu2 [4732 B] Get:96 http://ftpmaster.internal/ubuntu cosmic/main armhf e2fslibs armhf 1.44.3-1 [2704 B] Get:97 http://ftpmaster.internal/ubuntu cosmic/main armhf pinentry-curses armhf 1.1.0-1build2 [31.4 kB] Get:98 http://ftpmaster.internal/ubuntu cosmic/main armhf libnpth0 armhf 1.5-4 [6648 B] Get:99 http://ftpmaster.internal/ubuntu cosmic/main armhf gpg armhf 2.2.8-1ubuntu1 [411 kB] Get:100 http://ftpmaster.internal/ubuntu cosmic/main armhf gpgconf armhf 2.2.8-1ubuntu1 [105 kB] Get:101 http://ftpmaster.internal/ubuntu cosmic/main armhf gpg-agent armhf 2.2.8-1ubuntu1 [189 kB] Get:102 http://ftpmaster.internal/ubuntu cosmic/main armhf libcomerr2 armhf 1.44.3-1 [2704 B] Get:103 http://ftpmaster.internal/ubuntu cosmic/main armhf libusb-0.1-4 armhf 2:0.1.12-32 [15.6 kB] Get:104 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf linux-libc-dev armhf 4.17.0-5.6 [985 kB] Get:105 http://ftpmaster.internal/ubuntu cosmic/main armhf pkgbinarymangler all 139 [52.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 47.9 MB in 2s (21.0 MB/s) (Reading database ... 12378 files and directories currently installed.) Preparing to unpack .../base-files_10.1ubuntu4_armhf.deb ... Unpacking base-files (10.1ubuntu4) over (10.1ubuntu2) ... Setting up base-files (10.1ubuntu4) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Selecting previously unselected package libtinfo6:armhf. (Reading database ... 12378 files and directories currently installed.) Preparing to unpack .../libtinfo6_6.1+20180210-4ubuntu1_armhf.deb ... Unpacking libtinfo6:armhf (6.1+20180210-4ubuntu1) ... Setting up libtinfo6:armhf (6.1+20180210-4ubuntu1) ... (Reading database ... 12387 files and directories currently installed.) Preparing to unpack .../debianutils_4.8.6_armhf.deb ... Unpacking debianutils (4.8.6) over (4.8.4) ... Setting up debianutils (4.8.6) ... (Reading database ... 12387 files and directories currently installed.) Preparing to unpack .../bash_4.4.18-2ubuntu2_armhf.deb ... Unpacking bash (4.4.18-2ubuntu2) over (4.4.18-2ubuntu1) ... Setting up bash (4.4.18-2ubuntu2) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 12387 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.32-0.1ubuntu1_armhf.deb ... Unpacking bsdutils (1:2.32-0.1ubuntu1) over (1:2.31.1-0.4ubuntu3) ... Setting up bsdutils (1:2.32-0.1ubuntu1) ... (Reading database ... 12387 files and directories currently installed.) Preparing to unpack .../tar_1.30+dfsg-2_armhf.deb ... Unpacking tar (1.30+dfsg-2) over (1.29b-2) ... Setting up tar (1.30+dfsg-2) ... (Reading database ... 12387 files and directories currently installed.) Preparing to unpack .../dpkg_1.19.0.5ubuntu3_armhf.deb ... Unpacking dpkg (1.19.0.5ubuntu3) over (1.19.0.5ubuntu2) ... Setting up dpkg (1.19.0.5ubuntu3) ... (Reading database ... 12387 files and directories currently installed.) 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Setting up linux-libc-dev:armhf (4.17.0-5.6) ... Setting up perl-modules-5.26 (5.26.2-6) ... Setting up libargon2-0 (0~20171227-0.1) ... Setting up gcc-7-base:armhf (7.3.0-24ubuntu1) ... Setting up binutils-common:armhf (2.30-22ubuntu1) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... Setting up libperl5.26:armhf (5.26.2-6) ... Setting up libssl1.1:armhf (1.1.0g-2ubuntu5) ... Setting up openssl (1.1.0g-2ubuntu5) ... Setting up libsqlite3-0:armhf (3.24.0-1) ... Setting up pinentry-curses (1.1.0-1build2) ... Setting up libcomerr2:armhf (1.44.3-1) ... Setting up libslang2:armhf (2.3.2-1ubuntu1) ... Setting up libusb-0.1-4:armhf (2:0.1.12-32) ... Setting up gpg (2.2.8-1ubuntu1) ... Setting up libasan4:armhf (7.3.0-24ubuntu1) ... Setting up libbinutils:armhf (2.30-22ubuntu1) ... Setting up libcilkrts5:armhf (7.3.0-24ubuntu1) ... Setting up libubsan0:armhf (7.3.0-24ubuntu1) ... Setting up binutils-arm-linux-gnueabihf (2.30-22ubuntu1) ... Setting up gpg-agent (2.2.8-1ubuntu1) ... Setting up libgcc-7-dev:armhf (7.3.0-24ubuntu1) ... Setting up cpp-7 (7.3.0-24ubuntu1) ... Setting up libstdc++-7-dev:armhf (7.3.0-24ubuntu1) ... Setting up perl (5.26.2-6) ... Setting up binutils (2.30-22ubuntu1) ... Setting up cpp (4:7.3.0-3ubuntu3) ... Setting up gcc-7 (7.3.0-24ubuntu1) ... Setting up g++-7 (7.3.0-24ubuntu1) ... Setting up libdpkg-perl (1.19.0.5ubuntu3) ... Setting up gcc (4:7.3.0-3ubuntu3) ... Setting up dpkg-dev (1.19.0.5ubuntu3) ... Setting up g++ (4:7.3.0-3ubuntu3) ... Setting up build-essential (12.5ubuntu2) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-15114657 armhf cosmic-proposed -c chroot:build-PACKAGEBUILD-15114657 --arch=armhf --dist=cosmic-proposed --nolog kmc_2.3+dfsg-6.dsc Initiating build PACKAGEBUILD-15114657 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-130-generic #156-Ubuntu SMP Thu Jun 14 08:52:48 UTC 2018 armv7l sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-arm64-016.buildd +==============================================================================+ | kmc 2.3+dfsg-6 (armhf) 12 Jul 2018 05:12 | +==============================================================================+ Package: kmc Version: 2.3+dfsg-6 Source Version: 2.3+dfsg-6 Distribution: cosmic-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf I: NOTICE: Log filtering will replace 'build/kmc-25DV4u/kmc-2.3+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/kmc-25DV4u' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-15114657/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- kmc_2.3+dfsg-6.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-Iw4Pu8/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-Iw4Pu8/apt_archive ./ InRelease Get:2 copy:/<>/resolver-Iw4Pu8/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-Iw4Pu8/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-Iw4Pu8/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-Iw4Pu8/apt_archive ./ Packages [527 B] Fetched 2860 B in 49710d 6h 28min 15s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libargon2-0 libncursesw5 libprocps6 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-Iw4Pu8/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12442 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 11~), dh-exec, zlib1g-dev, libbz2-dev, help2man, asciidoctor, d-shlibs Filtered Build-Depends: debhelper (>= 11~), dh-exec, zlib1g-dev, libbz2-dev, help2man, asciidoctor, d-shlibs dpkg-deb: building package 'sbuild-build-depends-kmc-dummy' in '/<>/resolver-bzM0nY/apt_archive/sbuild-build-depends-kmc-dummy.deb'. Ign:1 copy:/<>/resolver-bzM0nY/apt_archive ./ InRelease Get:2 copy:/<>/resolver-bzM0nY/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-bzM0nY/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-bzM0nY/apt_archive ./ Sources [250 B] Get:5 copy:/<>/resolver-bzM0nY/apt_archive ./ Packages [567 B] Fetched 2936 B in 49710d 6h 28min 15s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install kmc build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libargon2-0 libncursesw5 libprocps6 Use 'apt autoremove' to remove them. The following additional packages will be installed: asciidoctor autoconf automake autopoint autotools-dev bsdmainutils d-shlibs debhelper dh-autoreconf dh-exec dh-strip-nondeterminism dwz file gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libbsd0 libbz2-dev libcroco3 libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libicu60 liblocale-gettext-perl libmagic-mgc libmagic1 libpipeline1 libruby2.5 libsigsegv2 libtimedate-perl libtool libxml2 libyaml-0-2 m4 man-db po-debconf rake ruby ruby-asciidoctor ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert ruby-test-unit ruby2.5 rubygems-integration zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl ri ruby-dev bundler Recommended packages: curl | wget | lynx bzip2-doc libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl zip fonts-lato libjs-jquery The following NEW packages will be installed: asciidoctor autoconf automake autopoint autotools-dev bsdmainutils d-shlibs debhelper dh-autoreconf dh-exec dh-strip-nondeterminism dwz file gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libbsd0 libbz2-dev libcroco3 libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libicu60 liblocale-gettext-perl libmagic-mgc libmagic1 libpipeline1 libruby2.5 libsigsegv2 libtimedate-perl libtool libxml2 libyaml-0-2 m4 man-db po-debconf rake ruby ruby-asciidoctor ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert ruby-test-unit ruby2.5 rubygems-integration sbuild-build-depends-kmc-dummy zlib1g-dev 0 upgraded, 51 newly installed, 0 to remove and 0 not upgraded. Need to get 19.7 MB of archives. After this operation, 73.5 MB of additional disk space will be used. Get:1 copy:/<>/resolver-bzM0nY/apt_archive ./ sbuild-build-depends-kmc-dummy 0.invalid.0 [900 B] Get:2 http://ftpmaster.internal/ubuntu cosmic/main armhf liblocale-gettext-perl armhf 1.07-3build2 [16.1 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic/main armhf libbsd0 armhf 0.9.1-1 [43.1 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic/main armhf bsdmainutils armhf 11.1.2ubuntu2 [176 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main armhf groff-base armhf 1.22.3-10 [1013 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main armhf libpipeline1 armhf 1.5.0-1 [21.1 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/main armhf man-db armhf 2.8.3-2 [993 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/main armhf libmagic-mgc armhf 1:5.33-3 [192 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic/main armhf libmagic1 armhf 1:5.33-3 [63.7 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic/main armhf file armhf 1:5.33-3 [22.1 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic/main armhf libelf1 armhf 0.170-0.5 [42.2 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic/main armhf libglib2.0-0 armhf 2.56.1-2ubuntu1 [1014 kB] Get:13 http://ftpmaster.internal/ubuntu cosmic/main armhf libicu60 armhf 60.2-6ubuntu1 [7801 kB] Get:14 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf libxml2 armhf 2.9.4+dfsg1-7build1 [568 kB] Get:15 http://ftpmaster.internal/ubuntu cosmic/main armhf libyaml-0-2 armhf 0.2.1-1 [40.1 kB] Get:16 http://ftpmaster.internal/ubuntu cosmic/main armhf gettext-base armhf 0.19.8.1-6build1 [46.2 kB] Get:17 http://ftpmaster.internal/ubuntu cosmic/main armhf rubygems-integration all 1.11 [4994 B] Get:18 http://ftpmaster.internal/ubuntu cosmic/main armhf rake all 12.3.1-3 [44.9 kB] Get:19 http://ftpmaster.internal/ubuntu cosmic/main armhf ruby-did-you-mean all 1.2.1-1 [9828 B] Get:20 http://ftpmaster.internal/ubuntu cosmic/main armhf ruby-minitest all 5.10.3-1 [38.6 kB] Get:21 http://ftpmaster.internal/ubuntu cosmic/main armhf ruby-net-telnet all 0.1.1-2 [12.6 kB] Get:22 http://ftpmaster.internal/ubuntu cosmic/main armhf ruby-power-assert all 1.1.1-1 [11.0 kB] Get:23 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf ruby-test-unit all 3.2.7-1 [61.4 kB] Get:24 http://ftpmaster.internal/ubuntu cosmic/main armhf libruby2.5 armhf 2.5.1-1ubuntu1 [2836 kB] Get:25 http://ftpmaster.internal/ubuntu cosmic/main armhf ruby2.5 armhf 2.5.1-1ubuntu1 [48.5 kB] Get:26 http://ftpmaster.internal/ubuntu cosmic/main armhf ruby armhf 1:2.5.1 [5712 B] Get:27 http://ftpmaster.internal/ubuntu cosmic/universe armhf ruby-asciidoctor all 1.5.7.1-1 [157 kB] Get:28 http://ftpmaster.internal/ubuntu cosmic/universe armhf asciidoctor armhf 1.5.7.1-1 [37.4 kB] Get:29 http://ftpmaster.internal/ubuntu cosmic/main armhf libsigsegv2 armhf 2.12-2 [13.1 kB] Get:30 http://ftpmaster.internal/ubuntu cosmic/main armhf m4 armhf 1.4.18-1 [181 kB] Get:31 http://ftpmaster.internal/ubuntu cosmic/main armhf autoconf all 2.69-11 [322 kB] Get:32 http://ftpmaster.internal/ubuntu cosmic/main armhf autotools-dev all 20180224.1 [39.6 kB] Get:33 http://ftpmaster.internal/ubuntu cosmic/main armhf automake all 1:1.15.1-3ubuntu2 [509 kB] Get:34 http://ftpmaster.internal/ubuntu cosmic/main armhf autopoint all 0.19.8.1-6build1 [412 kB] Get:35 http://ftpmaster.internal/ubuntu cosmic/universe armhf d-shlibs all 0.82 [9880 B] Get:36 http://ftpmaster.internal/ubuntu cosmic/main armhf libtool all 2.4.6-2.1 [195 kB] Get:37 http://ftpmaster.internal/ubuntu cosmic/main armhf dh-autoreconf all 19 [16.1 kB] Get:38 http://ftpmaster.internal/ubuntu cosmic/main armhf libarchive-zip-perl all 1.60-1ubuntu1 [84.6 kB] Get:39 http://ftpmaster.internal/ubuntu cosmic/main armhf libfile-stripnondeterminism-perl all 0.042-1 [15.2 kB] Get:40 http://ftpmaster.internal/ubuntu cosmic/main armhf libtimedate-perl all 2.3000-2 [37.5 kB] Get:41 http://ftpmaster.internal/ubuntu cosmic/main armhf dh-strip-nondeterminism all 0.042-1 [5188 B] Get:42 http://ftpmaster.internal/ubuntu cosmic/main armhf dwz armhf 0.12-2 [72.0 kB] Get:43 http://ftpmaster.internal/ubuntu cosmic/main armhf libcroco3 armhf 0.6.12-2 [69.4 kB] Get:44 http://ftpmaster.internal/ubuntu cosmic/main armhf gettext armhf 0.19.8.1-6build1 [834 kB] Get:45 http://ftpmaster.internal/ubuntu cosmic/main armhf intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:46 http://ftpmaster.internal/ubuntu cosmic/main armhf po-debconf all 1.0.20 [232 kB] Get:47 http://ftpmaster.internal/ubuntu cosmic/main armhf debhelper all 11.3.2ubuntu1 [883 kB] Get:48 http://ftpmaster.internal/ubuntu cosmic/universe armhf help2man armhf 1.47.6 [162 kB] Get:49 http://ftpmaster.internal/ubuntu cosmic/main armhf libbz2-dev armhf 1.0.6-8.1 [27.6 kB] Get:50 http://ftpmaster.internal/ubuntu cosmic/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-0ubuntu2 [168 kB] Get:51 http://ftpmaster.internal/ubuntu cosmic/main armhf dh-exec armhf 0.23build1 [23.5 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 19.7 MB in 1s (36.1 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 12442 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-3build2_armhf.deb ... Unpacking liblocale-gettext-perl (1.07-3build2) ... Selecting previously unselected package libbsd0:armhf. Preparing to unpack .../01-libbsd0_0.9.1-1_armhf.deb ... Unpacking libbsd0:armhf (0.9.1-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../02-bsdmainutils_11.1.2ubuntu2_armhf.deb ... Unpacking bsdmainutils (11.1.2ubuntu2) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.3-10_armhf.deb ... Unpacking groff-base (1.22.3-10) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../04-libpipeline1_1.5.0-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.0-1) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.3-2_armhf.deb ... Unpacking man-db (2.8.3-2) ... 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Selecting previously unselected package dh-exec. Preparing to unpack .../49-dh-exec_0.23build1_armhf.deb ... Unpacking dh-exec (0.23build1) ... Selecting previously unselected package sbuild-build-depends-kmc-dummy. Preparing to unpack .../50-sbuild-build-depends-kmc-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-kmc-dummy (0.invalid.0) ... Setting up libicu60:armhf (60.2-6ubuntu1) ... Setting up libbz2-dev:armhf (1.0.6-8.1) ... Setting up libarchive-zip-perl (1.60-1ubuntu1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libsigsegv2:armhf (2.12-2) ... Setting up libelf1:armhf (0.170-0.5) ... Setting up groff-base (1.22.3-10) ... Setting up libglib2.0-0:armhf (2.56.1-2ubuntu1) ... No schema files found: doing nothing. Setting up d-shlibs (0.82) ... Setting up gettext-base (0.19.8.1-6build1) ... Setting up libpipeline1:armhf (1.5.0-1) ... Setting up m4 (1.4.18-1) ... Setting up libbsd0:armhf (0.9.1-1) ... Setting up libxml2:armhf (2.9.4+dfsg1-7build1) ... Setting up libmagic-mgc (1:5.33-3) ... Setting up libmagic1:armhf (1:5.33-3) ... Setting up libcroco3:armhf (0.6.12-2) ... Setting up ruby-did-you-mean (1.2.1-1) ... Setting up libyaml-0-2:armhf (0.2.1-1) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... Setting up dwz (0.12-2) ... Setting up autotools-dev (20180224.1) ... Setting up ruby-net-telnet (0.1.1-2) ... Setting up liblocale-gettext-perl (1.07-3build2) ... Setting up rubygems-integration (1.11) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up ruby-minitest (5.10.3-1) ... Setting up autopoint (0.19.8.1-6build1) ... Setting up ruby-power-assert (1.1.1-1) ... Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-0ubuntu2) ... Setting up libfile-stripnondeterminism-perl (0.042-1) ... Setting up ruby-test-unit (3.2.7-1) ... Setting up gettext (0.19.8.1-6build1) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.33-3) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up automake (1:1.15.1-3ubuntu2) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up help2man (1.47.6) ... Setting up man-db (2.8.3-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libtool (2.4.6-2.1) ... Setting up po-debconf (1.0.20) ... Setting up libruby2.5:armhf (2.5.1-1ubuntu1) ... Setting up dh-autoreconf (19) ... Setting up debhelper (11.3.2ubuntu1) ... Setting up ruby2.5 (2.5.1-1ubuntu1) ... Setting up dh-strip-nondeterminism (0.042-1) ... Setting up dh-exec (0.23build1) ... Setting up ruby (1:2.5.1) ... Setting up rake (12.3.1-3) ... Setting up ruby-asciidoctor (1.5.7.1-1) ... Setting up asciidoctor (1.5.7.1-1) ... Setting up sbuild-build-depends-kmc-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-130-generic arm64 (armv7l) Toolchain package versions: binutils_2.30-22ubuntu1 dpkg-dev_1.19.0.5ubuntu3 g++-7_7.3.0-24ubuntu1 gcc-7_7.3.0-24ubuntu1 libc6-dev_2.27-3ubuntu1 libstdc++-7-dev_7.3.0-24ubuntu1 libstdc++6_8.1.0-9ubuntu1 linux-libc-dev_4.17.0-5.6 Package versions: adduser_3.117ubuntu1 advancecomp_2.1-1 apt_1.7.0~alpha2 asciidoctor_1.5.7.1-1 autoconf_2.69-11 automake_1:1.15.1-3ubuntu2 autopoint_0.19.8.1-6build1 autotools-dev_20180224.1 base-files_10.1ubuntu4 base-passwd_3.5.45 bash_4.4.18-2ubuntu2 binutils_2.30-22ubuntu1 binutils-arm-linux-gnueabihf_2.30-22ubuntu1 binutils-common_2.30-22ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.32-0.1ubuntu1 build-essential_12.5ubuntu2 bzip2_1.0.6-8.1 ca-certificates_20180409 coreutils_8.28-1ubuntu1 cpp_4:7.3.0-3ubuntu3 cpp-7_7.3.0-24ubuntu1 d-shlibs_0.82 dash_0.5.8-2.10 debconf_1.5.67 debhelper_11.3.2ubuntu1 debianutils_4.8.6 dh-autoreconf_19 dh-exec_0.23build1 dh-strip-nondeterminism_0.042-1 diffutils_1:3.6-1 dmsetup_2:1.02.145-4.1ubuntu3 dpkg_1.19.0.5ubuntu3 dpkg-dev_1.19.0.5ubuntu3 dwz_0.12-2 e2fslibs_1.44.3-1 e2fsprogs_1.44.3-1 fakeroot_1.22-2ubuntu1 fdisk_2.32-0.1ubuntu1 file_1:5.33-3 findutils_4.6.0+git+20170828-2 g++_4:7.3.0-3ubuntu3 g++-7_7.3.0-24ubuntu1 gcc_4:7.3.0-3ubuntu3 gcc-7_7.3.0-24ubuntu1 gcc-7-base_7.3.0-24ubuntu1 gcc-8-base_8.1.0-9ubuntu1 gettext_0.19.8.1-6build1 gettext-base_0.19.8.1-6build1 gpg_2.2.8-1ubuntu1 gpg-agent_2.2.8-1ubuntu1 gpgconf_2.2.8-1ubuntu1 gpgv_2.2.8-1ubuntu1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5ubuntu1 help2man_1.47.6 hostname_3.20 init_1.51 init-system-helpers_1.51 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libapparmor1_2.12-4ubuntu6 libapt-pkg5.0_1.7.0~alpha2 libarchive-zip-perl_1.60-1ubuntu1 libargon2-0_0~20171227-0.1 libargon2-1_0~20171227-0.1 libasan4_7.3.0-24ubuntu1 libassuan0_2.5.1-2 libatomic1_8.1.0-9ubuntu1 libattr1_1:2.4.47-2build1 libaudit-common_1:2.8.3-1ubuntu2 libaudit1_1:2.8.3-1ubuntu2 libbinutils_2.30-22ubuntu1 libblkid1_2.32-0.1ubuntu1 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-8.1 libbz2-dev_1.0.6-8.1 libc-bin_2.27-3ubuntu1 libc-dev-bin_2.27-3ubuntu1 libc6_2.27-3ubuntu1 libc6-dev_2.27-3ubuntu1 libcap-ng0_0.7.9-1 libcap2_1:2.25-1.2 libcc1-0_8.1.0-9ubuntu1 libcilkrts5_7.3.0-24ubuntu1 libcom-err2_1.44.3-1 libcomerr2_1.44.3-1 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.2-1ubuntu3 libdb5.3_5.3.28-13.1ubuntu1 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.145-4.1ubuntu3 libdpkg-perl_1.19.0.5ubuntu3 libelf1_0.170-0.5 libext2fs2_1.44.3-1 libfakeroot_1.22-2ubuntu1 libfdisk1_2.32-0.1ubuntu1 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.042-1 libgcc-7-dev_7.3.0-24ubuntu1 libgcc1_1:8.1.0-9ubuntu1 libgcrypt20_1.8.3-1ubuntu1 libgdbm-compat4_1.14.1-6 libgdbm5_1.14.1-6 libglib2.0-0_2.56.1-2ubuntu1 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.5.18-1ubuntu1 libgomp1_8.1.0-9ubuntu1 libgpg-error0_1.31-1 libhogweed4_3.4-1 libicu60_60.2-6ubuntu1 libidn11_1.33-2.1ubuntu1 libidn2-0_2.0.4-1.1build2 libip4tc0_1.6.1-2ubuntu2 libisl19_0.19-1 libjson-c3_0.12.1-1.3 libkmod2_25-1ubuntu1 liblocale-gettext-perl_1.07-3build2 liblockfile-bin_1.14-1.1 liblockfile1_1.14-1.1 liblz4-1_1.8.2-1ubuntu1 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.33-3 libmagic1_1:5.33-3 libmount1_2.32-0.1ubuntu1 libmpc3_1.1.0-1 libmpfr6_4.0.1-1 libncurses5_6.1+20180210-4ubuntu1 libncurses6_6.1+20180210-4ubuntu1 libncursesw5_6.1+20180210-4ubuntu1 libncursesw6_6.1+20180210-4ubuntu1 libnettle6_3.4-1 libnpth0_1.5-4 libp11-kit0_0.23.12-2 libpam-modules_1.1.8-3.6ubuntu2 libpam-modules-bin_1.1.8-3.6ubuntu2 libpam-runtime_1.1.8-3.6ubuntu2 libpam0g_1.1.8-3.6ubuntu2 libpcre3_2:8.39-9 libperl5.26_5.26.2-6 libpipeline1_1.5.0-1 libpng16-16_1.6.34-2 libprocps6_2:3.3.12-3ubuntu1 libprocps7_2:3.3.15-2ubuntu1 libreadline7_7.0-5 libruby2.5_2.5.1-1ubuntu1 libseccomp2_2.3.3-3ubuntu1 libselinux1_2.8-1build1 libsemanage-common_2.8-1build1 libsemanage1_2.8-1build1 libsepol1_2.8-1 libsigsegv2_2.12-2 libslang2_2.3.2-1ubuntu1 libsmartcols1_2.32-0.1ubuntu1 libsqlite3-0_3.24.0-1 libss2_1.44.3-1 libssl1.1_1.1.0g-2ubuntu5 libstdc++-7-dev_7.3.0-24ubuntu1 libstdc++6_8.1.0-9ubuntu1 libsystemd0_238-5ubuntu2 libtasn1-6_4.13-3 libtimedate-perl_2.3000-2 libtinfo5_6.1+20180210-4ubuntu1 libtinfo6_6.1+20180210-4ubuntu1 libtool_2.4.6-2.1 libubsan0_7.3.0-24ubuntu1 libudev1_238-5ubuntu2 libunistring2_0.9.9-0ubuntu1 libusb-0.1-4_2:0.1.12-32 libuuid1_2.32-0.1ubuntu1 libxml2_2.9.4+dfsg1-7build1 libyaml-0-2_0.2.1-1 libzstd1_1.3.3+dfsg-2ubuntu1 linux-libc-dev_4.17.0-5.6 lockfile-progs_0.1.17build1 login_1:4.5-1ubuntu1 lsb-base_9.20170808ubuntu1 m4_1.4.18-1 make_4.1-9.1ubuntu1 man-db_2.8.3-2 mawk_1.3.3-17ubuntu3 mount_2.32-0.1ubuntu1 multiarch-support_2.27-3ubuntu1 ncurses-base_6.1+20180210-4ubuntu1 ncurses-bin_6.1+20180210-4ubuntu1 openssl_1.1.0g-2ubuntu5 optipng_0.7.6-1.1 passwd_1:4.5-1ubuntu1 patch_2.7.6-2ubuntu1 perl_5.26.2-6 perl-base_5.26.2-6 perl-modules-5.26_5.26.2-6 pinentry-curses_1.1.0-1build2 pkgbinarymangler_139 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu1 rake_12.3.1-3 readline-common_7.0-5 ruby_1:2.5.1 ruby-asciidoctor_1.5.7.1-1 ruby-did-you-mean_1.2.1-1 ruby-minitest_5.10.3-1 ruby-net-telnet_0.1.1-2 ruby-power-assert_1.1.1-1 ruby-test-unit_3.2.7-1 ruby2.5_2.5.1-1ubuntu1 rubygems-integration_1.11 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-kmc-dummy_0.invalid.0 sed_4.5-1 sensible-utils_0.0.12 systemd_238-5ubuntu2 systemd-sysv_238-5ubuntu2 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu1 tar_1.30+dfsg-2 tzdata_2018e-1 ubuntu-keyring_2018.02.28 util-linux_2.32-0.1ubuntu1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 zlib1g-dev_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Wed Jul 11 20:07:20 2018 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./kmc_2.3+dfsg-6.dsc dpkg-source: info: extracting kmc in kmc-2.3+dfsg dpkg-source: info: unpacking kmc_2.3+dfsg.orig.tar.gz dpkg-source: info: unpacking kmc_2.3+dfsg-6.debian.tar.xz dpkg-source: info: applying disable-asmlib dpkg-source: info: applying use-shared-libs dpkg-source: info: applying hardening dpkg-source: info: applying 0005-Add-static-library-target-to-makefile.patch dpkg-source: info: applying 0007-Use-standard-compiler-environment-variables.patch dpkg-source: info: applying spelling dpkg-source: info: applying newish_gcc_build_fix.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-15114657 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-15114657 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-15114657 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package kmc dpkg-buildpackage: info: source version 2.3+dfsg-6 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build kmc-2.3+dfsg dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>/kmc-2.3+dfsg' rm -rf /<>/kmc-2.3+dfsg/debian/man_src/*.html /<>/kmc-2.3+dfsg/debian/man_src/*.? rm -rf /<>/kmc-2.3+dfsg/debian/man dh_auto_clean -- make -j4 clean make[2]: Entering directory '/<>/kmc-2.3+dfsg' makefile:56: target 'kmc_api/mmer.o' given more than once in the same rule rm kmer_counter/*.o rm: cannot remove 'kmer_counter/*.o': No such file or directory makefile:80: recipe for target 'clean' failed make[2]: [clean] Error 1 (ignored) rm kmc_api/*.o rm: cannot remove 'kmc_api/*.o': No such file or directory makefile:80: recipe for target 'clean' failed make[2]: [clean] Error 1 (ignored) rm kmc_dump/*.o rm: cannot remove 'kmc_dump/*.o': No such file or directory makefile:80: recipe for target 'clean' failed make[2]: [clean] Error 1 (ignored) rm kmc_tools/*.o rm: cannot remove 'kmc_tools/*.o': No such file or directory makefile:80: recipe for target 'clean' failed make[2]: [clean] Error 1 (ignored) rm -rf bin rm -f libkmc.a make[2]: Leaving directory '/<>/kmc-2.3+dfsg' make[1]: Leaving directory '/<>/kmc-2.3+dfsg' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/kmc.substvars debian/libkmc-dev.substvars debian/files rm -fr -- debian/kmc/ debian/tmp/ debian/libkmc-dev/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a dh_auto_build -a make -j4 "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/kmc-2.3+dfsg' makefile:56: target 'kmc_api/mmer.o' given more than once in the same rule g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmer_counter/kmer_counter.cpp -o kmer_counter/kmer_counter.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmer_counter/mmer.cpp -o kmer_counter/mmer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmer_counter/mem_disk_file.cpp -o kmer_counter/mem_disk_file.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmer_counter/rev_byte.cpp -o kmer_counter/rev_byte.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmer_counter/bkb_writer.cpp -o kmer_counter/bkb_writer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmer_counter/bkb_reader.cpp -o kmer_counter/bkb_reader.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmer_counter/fastq_reader.cpp -o kmer_counter/fastq_reader.o kmer_counter/kmer_counter.cpp: In function ‘int main(int, char**)’: kmer_counter/kmer_counter.cpp:473:1: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ kmer_counter/kmer_counter.cpp:475:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ cout << " Total no. of super-k-mers : " << setw(12) << n_total_super_kmers << "\n"; ^~~~ In file included from /usr/include/c++/7/map:60:0, from kmer_counter/queues.h:20, from kmer_counter/params.h:15, from kmer_counter/bkb_reader.h:15, from kmer_counter/bkb_reader.cpp:12: /usr/include/c++/7/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >; _KeyOfValue = std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >; _Compare = std::less; _Alloc = std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >]’: /usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/map:61:0, from kmer_counter/queues.h:20, from kmer_counter/params.h:15, from kmer_counter/bkb_reader.h:15, from kmer_counter/bkb_reader.cpp:12: /usr/include/c++/7/bits/stl_map.h: In member function ‘void CBigKmerBinReader::ProcessBigBin()’: /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ In file included from /usr/include/c++/7/map:60:0, from kmer_counter/queues.h:20, from kmer_counter/params.h:15, from kmer_counter/bkb_writer.h:14, from kmer_counter/bkb_writer.cpp:12: /usr/include/c++/7/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair, std::allocator >, long long unsigned int> >; _KeyOfValue = std::_Select1st, std::allocator >, long long unsigned int> > >; _Compare = std::less; _Alloc = std::allocator, std::allocator >, long long unsigned int> > >]’: /usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long unsigned int> >, std::_Select1st, std::allocator >, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long unsigned int> > >}’ changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmer_counter/timer.cpp -o kmer_counter/timer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmer_counter/radix.cpp -o kmer_counter/radix.o In file included from /usr/include/c++/7/map:61:0, from kmer_counter/queues.h:20, from kmer_counter/params.h:15, from kmer_counter/bkb_writer.h:14, from kmer_counter/bkb_writer.cpp:12: /usr/include/c++/7/bits/stl_map.h: In member function ‘void CBigKmerBinWriter::Process()’: /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long unsigned int> >, std::_Select1st, std::allocator >, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long unsigned int> >, std::_Select1st, std::allocator >, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmer_counter/kb_completer.cpp -o kmer_counter/kb_completer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmer_counter/kb_storer.cpp -o kmer_counter/kb_storer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmer_counter/kmer.cpp -o kmer_counter/kmer.o In file included from /usr/include/c++/7/map:60:0, from kmer_counter/queues.h:20, from kmer_counter/params.h:15, from kmer_counter/kb_completer.h:14, from kmer_counter/kb_completer.cpp:14: /usr/include/c++/7/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >; _KeyOfValue = std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >; _Compare = std::less; _Alloc = std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >]’: /usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/map:61:0, from kmer_counter/queues.h:20, from kmer_counter/params.h:15, from kmer_counter/kb_completer.h:14, from kmer_counter/kb_completer.cpp:14: /usr/include/c++/7/bits/stl_map.h: In member function ‘void CKmerBinCompleter::ProcessBinsFirstStage()’: /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmer_counter/prob_qual.cpp -o kmer_counter/prob_qual.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmc_dump/nc_utils.cpp -o kmc_dump/nc_utils.o In file included from /usr/include/c++/7/map:60:0, from kmer_counter/queues.h:20, from kmer_counter/params.h:15, from kmer_counter/kb_storer.h:15, from kmer_counter/kb_storer.cpp:14: /usr/include/c++/7/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >; _KeyOfValue = std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >; _Compare = std::less; _Alloc = std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >]’: /usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmc_api/mmer.cpp -o kmc_api/mmer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmc_dump/kmc_dump.cpp -o kmc_dump/kmc_dump.o In file included from /usr/include/c++/7/map:61:0, from kmer_counter/queues.h:20, from kmer_counter/params.h:15, from kmer_counter/kb_storer.h:15, from kmer_counter/kb_storer.cpp:14: /usr/include/c++/7/bits/stl_map.h: In member function ‘bool CKmerBinStorer::OpenFiles()’: /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmc_api/kmc_file.cpp -o kmc_api/kmc_file.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmc_api/kmer_api.cpp -o kmc_api/kmer_api.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -Wall -O3 -fopenmp -std=c++14 -c kmc_tools/kmc_header.cpp -o kmc_tools/kmc_header.o kmc_api/kmc_file.cpp: In member function ‘bool CKMCFile::BinarySearch(int64, int64, const CKmerAPI&, uint64&, uint32)’: kmc_api/kmc_file.cpp:1360:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (index_start >= total_kmers) ~~~~~~~~~~~~^~~~~~~~~~~~~~ kmc_api/kmc_file.cpp: In member function ‘void CKMCFile::Reload_sufix_file_buf()’: kmc_api/kmc_file.cpp:607:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread (sufix_file_buf, 1, (size_t) part_size, file_suf); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_api/kmc_file.cpp: In member function ‘bool CKMCFile::RestartListing()’: kmc_api/kmc_file.cpp:653:9: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread (sufix_file_buf, 1, (size_t) part_size, file_suf); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -Wall -O3 -fopenmp -std=c++14 -c kmc_tools/kmc_tools.cpp -o kmc_tools/kmc_tools.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -Wall -O3 -fopenmp -std=c++14 -c kmc_tools/nc_utils.cpp -o kmc_tools/nc_utils.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -Wall -O3 -fopenmp -std=c++14 -c kmc_tools/parameters_parser.cpp -o kmc_tools/parameters_parser.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -Wall -O3 -fopenmp -std=c++14 -c kmc_tools/parser.cpp -o kmc_tools/parser.o In file included from /usr/include/c++/7/vector:69:0, from kmc_tools/config.h:16, from kmc_tools/kmc1_db_reader.h:15, from kmc_tools/expression_node.h:19, from kmc_tools/parser.h:14, from kmc_tools/parameters_parser.h:15, from kmc_tools/parameters_parser.cpp:12: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {CKMC_header}; _Tp = CKMC_header; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘bool CParametersParser::validate_input_dbs()’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -Wall -O3 -fopenmp -std=c++14 -c kmc_tools/tokenizer.cpp -o kmc_tools/tokenizer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -Wall -O3 -fopenmp -std=c++14 -c kmc_tools/fastq_filter.cpp -o kmc_tools/fastq_filter.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -Wall -O3 -fopenmp -std=c++14 -c kmc_tools/fastq_reader.cpp -o kmc_tools/fastq_reader.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -Wall -O3 -fopenmp -std=c++14 -c kmc_tools/fastq_writer.cpp -o kmc_tools/fastq_writer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -Wall -O3 -fopenmp -std=c++14 -c kmc_tools/percent_progress.cpp -o kmc_tools/percent_progress.o In file included from /usr/include/c++/7/vector:69:0, from kmc_tools/percent_progress.h:15, from kmc_tools/percent_progress.cpp:12: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, long long unsigned int&}; _Tp = CPercentProgress::CDisplayItem; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘uint32 CPercentProgress::RegisterItem(const string&, uint64)’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string, std::allocator >, long long unsigned int&}; _Tp = CPercentProgress::CDisplayItem; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘uint32 CPercentProgress::RegisterItem(uint64)’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ar rcs libkmc.a kmc_api/mmer.o kmc_api/kmc_file.o kmc_api/kmer_api.o ranlib libkmc.a mkdir -p bin g++ -o bin/kmc_dump kmc_dump/nc_utils.o kmc_api/mmer.o kmc_dump/kmc_dump.o kmc_api/kmc_file.o kmc_api/kmer_api.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lm -lz -lbz2 -fopenmp -lpthread In file included from /usr/include/c++/7/algorithm:62:0, from /usr/include/c++/7/regex:38, from kmc_tools/tokenizer.h:16, from kmc_tools/parser.h:15, from kmc_tools/kmc_tools.cpp:16: /usr/include/c++/7/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: /usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/7/map:60:0, from kmer_counter/queues.h:20, from kmer_counter/params.h:15, from kmer_counter/kmc.h:15, from kmer_counter/kmer_counter.cpp:18: /usr/include/c++/7/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >; _KeyOfValue = std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >; _Compare = std::less; _Alloc = std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >]’: /usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from kmc_tools/kmc_tools.cpp:13: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::tuple}; _Tp = std::tuple; _Alloc = std::allocator >]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector > >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair, std::allocator >, long long unsigned int> >; _KeyOfValue = std::_Select1st, std::allocator >, long long unsigned int> > >; _Compare = std::less; _Alloc = std::allocator, std::allocator >, long long unsigned int> > >]’: /usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long unsigned int> >, std::_Select1st, std::allocator >, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long unsigned int> > >}’ changed in GCC 7.1 /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::tuple}; _Tp = std::tuple; _Alloc = std::allocator >]’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/map:61:0, from kmer_counter/queues.h:20, from kmer_counter/params.h:15, from kmer_counter/kmc.h:15, from kmer_counter/kmer_counter.cpp:18: /usr/include/c++/7/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = std::tuple, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int>; _Compare = std::less; _Alloc = std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >]’: /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ In file included from /usr/include/c++/7/queue:62:0, from kmc_tools/queues.h:20, from kmc_tools/config.h:20, from kmc_tools/kmc_tools.cpp:15: /usr/include/c++/7/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: /usr/include/c++/7/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/7/algorithm:62:0, from /usr/include/c++/7/regex:38, from kmc_tools/tokenizer.h:16, from kmc_tools/parser.h:15, from kmc_tools/kmc_tools.cpp:16: /usr/include/c++/7/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: /usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h: In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: /usr/include/c++/7/bits/stl_algo.h:1963:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __sort(_RandomAccessIterator __first, _RandomAccessIterator __last, ^~~~~~ /usr/include/c++/7/bits/stl_algo.h:1963:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/7/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h: In member function ‘bool CTools::filter() [with unsigned int SIZE = 8]’: /usr/include/c++/7/bits/stl_algo.h:4868:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h: In member function ‘bool CTools::filter() [with unsigned int SIZE = 7]’: /usr/include/c++/7/bits/stl_algo.h:4868:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h: In member function ‘bool CTools::filter() [with unsigned int SIZE = 6]’: /usr/include/c++/7/bits/stl_algo.h:4868:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h: In member function ‘bool CTools::filter() [with unsigned int SIZE = 5]’: /usr/include/c++/7/bits/stl_algo.h:4868:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h: In member function ‘bool CTools::filter() [with unsigned int SIZE = 4]’: /usr/include/c++/7/bits/stl_algo.h:4868:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h: In member function ‘bool CTools::filter() [with unsigned int SIZE = 3]’: /usr/include/c++/7/bits/stl_algo.h:4868:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h: In member function ‘bool CTools::filter() [with unsigned int SIZE = 1]’: /usr/include/c++/7/bits/stl_algo.h:4868:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_map.h: In static member function ‘static bool CSplitter_Impl::ProcessReads(CSplitter&, unsigned char*, uint64)’: /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_algo.h: In member function ‘bool CTools::filter() [with unsigned int SIZE = 2]’: /usr/include/c++/7/bits/stl_algo.h:4868:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from kmer_counter/kmer_counter.cpp:14: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector > >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/algorithm:62:0, from /usr/include/c++/7/ext/algorithm:61, from kmer_counter/defs.h:125, from kmer_counter/kmc.h:14, from kmer_counter/kmer_counter.cpp:18: /usr/include/c++/7/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const std::pair&)> >]’: /usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_algo.h: In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: /usr/include/c++/7/bits/stl_algo.h:1880:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __final_insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h:1880:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_algo.h: In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: /usr/include/c++/7/bits/stl_algo.h:1880:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_algo.h:1880:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/7/bits/stl_algo.h:61:0, from /usr/include/c++/7/algorithm:62, from /usr/include/c++/7/ext/algorithm:61, from kmer_counter/defs.h:125, from kmer_counter/kmc.h:14, from kmer_counter/kmer_counter.cpp:18: /usr/include/c++/7/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const std::pair&)> >]’: /usr/include/c++/7/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/7/algorithm:62:0, from /usr/include/c++/7/ext/algorithm:61, from kmer_counter/defs.h:125, from kmer_counter/kmc.h:14, from kmer_counter/kmer_counter.cpp:18: /usr/include/c++/7/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const std::pair&)> >]’: /usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from kmer_counter/kmer_counter.cpp:14: /usr/include/c++/7/bits/vector.tcc: In member function ‘void CBinDesc::init_random()’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/algorithm:62:0, from /usr/include/c++/7/ext/algorithm:61, from kmer_counter/defs.h:125, from kmer_counter/kmc.h:14, from kmer_counter/kmer_counter.cpp:18: /usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/7/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/map:61:0, from kmer_counter/queues.h:20, from kmer_counter/params.h:15, from kmer_counter/kmc.h:15, from kmer_counter/kmer_counter.cpp:18: /usr/include/c++/7/bits/stl_map.h: In member function ‘void CKmerBinReader::ProcessBins() [with KMER_T = CKmerQuake<8>; unsigned int SIZE = 8]’: /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h: In member function ‘void CKmerBinReader::ProcessBins() [with KMER_T = CKmer<8>; unsigned int SIZE = 8]’: /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h: In function ‘void CBigBinDesc::push(int32, int32, uint32, uint32, FILE*, std::__cxx11::string, uint64)’: /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long unsigned int> >, std::_Select1st, std::allocator >, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long unsigned int> >, std::_Select1st, std::allocator >, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h: In member function ‘void CKmerBinReader::ProcessBins() [with KMER_T = CKmerQuake<7>; unsigned int SIZE = 7]’: /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h: In member function ‘void CKmerBinReader::ProcessBins() [with KMER_T = CKmer<7>; unsigned int SIZE = 7]’: /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ In file included from /usr/include/c++/7/bits/stl_algo.h:61:0, from /usr/include/c++/7/algorithm:62, from /usr/include/c++/7/ext/algorithm:61, from kmer_counter/defs.h:125, from kmer_counter/kmc.h:14, from kmer_counter/kmer_counter.cpp:18: /usr/include/c++/7/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: /usr/include/c++/7/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/7/algorithm:62:0, from /usr/include/c++/7/ext/algorithm:61, from kmer_counter/defs.h:125, from kmer_counter/kmc.h:14, from kmer_counter/kmer_counter.cpp:18: /usr/include/c++/7/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: /usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h: In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: /usr/include/c++/7/bits/stl_algo.h:1963:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __sort(_RandomAccessIterator __first, _RandomAccessIterator __last, ^~~~~~ /usr/include/c++/7/bits/stl_algo.h:1963:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/7/bits/stl_algo.h:1971:31: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__final_insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h: In member function ‘bool CKMC::Process() [with KMER_T = CKmerQuake<8>; unsigned int SIZE = 8; bool QUAKE_MODE = true]’: /usr/include/c++/7/bits/stl_algo.h:4868:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h: In member function ‘bool CKMC::Process() [with KMER_T = CKmerQuake<7>; unsigned int SIZE = 7; bool QUAKE_MODE = true]’: /usr/include/c++/7/bits/stl_algo.h:4868:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h: In member function ‘bool CKMC::Process() [with KMER_T = CKmerQuake<6>; unsigned int SIZE = 6; bool QUAKE_MODE = true]’: /usr/include/c++/7/bits/stl_algo.h:4868:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h: In member function ‘bool CKMC::Process() [with KMER_T = CKmerQuake<5>; unsigned int SIZE = 5; bool QUAKE_MODE = true]’: /usr/include/c++/7/bits/stl_algo.h:4868:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h: In member function ‘bool CKMC::Process() [with KMER_T = CKmer<8>; unsigned int SIZE = 8; bool QUAKE_MODE = false]’: /usr/include/c++/7/bits/stl_algo.h:4868:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h: In member function ‘bool CKMC::Process() [with KMER_T = CKmer<7>; unsigned int SIZE = 7; bool QUAKE_MODE = false]’: /usr/include/c++/7/bits/stl_algo.h:4868:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h: In member function ‘bool CKMC::Process() [with KMER_T = CKmer<6>; unsigned int SIZE = 6; bool QUAKE_MODE = false]’: /usr/include/c++/7/bits/stl_algo.h:4868:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mkdir -p bin g++ -o bin/kmc_tools kmc_tools/kmc_header.o kmc_tools/kmc_tools.o kmc_tools/nc_utils.o kmc_tools/parameters_parser.o kmc_tools/parser.o kmc_tools/tokenizer.o kmc_tools/fastq_filter.o kmc_tools/fastq_reader.o kmc_tools/fastq_writer.o kmc_tools/percent_progress.o kmc_api/mmer.o kmc_api/kmc_file.o kmc_api/kmer_api.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lm -lz -lbz2 -fopenmp -lpthread /usr/include/c++/7/bits/stl_algo.h: In member function ‘bool CKMC::Process() [with KMER_T = CKmer<5>; unsigned int SIZE = 5; bool QUAKE_MODE = false]’: /usr/include/c++/7/bits/stl_algo.h:4868:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h: In member function ‘bool CKMC::Process() [with KMER_T = CKmerQuake<4>; unsigned int SIZE = 4; bool QUAKE_MODE = true]’: /usr/include/c++/7/bits/stl_algo.h:4868:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h: In member function ‘bool CKMC::Process() [with KMER_T = CKmer<4>; unsigned int SIZE = 4; bool QUAKE_MODE = false]’: /usr/include/c++/7/bits/stl_algo.h:4868:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/map:61:0, from kmer_counter/queues.h:20, from kmer_counter/params.h:15, from kmer_counter/kmc.h:15, from kmer_counter/kmer_counter.cpp:18: /usr/include/c++/7/bits/stl_map.h: In member function ‘void CKmerBinReader::ProcessBins() [with KMER_T = CKmerQuake<6>; unsigned int SIZE = 6]’: /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ In file included from /usr/include/c++/7/algorithm:62:0, from /usr/include/c++/7/ext/algorithm:61, from kmer_counter/defs.h:125, from kmer_counter/kmc.h:14, from kmer_counter/kmer_counter.cpp:18: /usr/include/c++/7/bits/stl_algo.h: In member function ‘bool CKMC::Process() [with KMER_T = CKmerQuake<3>; unsigned int SIZE = 3; bool QUAKE_MODE = true]’: /usr/include/c++/7/bits/stl_algo.h:4868:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/map:61:0, from kmer_counter/queues.h:20, from kmer_counter/params.h:15, from kmer_counter/kmc.h:15, from kmer_counter/kmer_counter.cpp:18: /usr/include/c++/7/bits/stl_map.h: In member function ‘void CKmerBinReader::ProcessBins() [with KMER_T = CKmer<6>; unsigned int SIZE = 6]’: /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ In file included from /usr/include/c++/7/algorithm:62:0, from /usr/include/c++/7/ext/algorithm:61, from kmer_counter/defs.h:125, from kmer_counter/kmc.h:14, from kmer_counter/kmer_counter.cpp:18: /usr/include/c++/7/bits/stl_algo.h: In member function ‘bool CKMC::Process() [with KMER_T = CKmer<3>; unsigned int SIZE = 3; bool QUAKE_MODE = false]’: /usr/include/c++/7/bits/stl_algo.h:4868:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_algo.h:61:0, from /usr/include/c++/7/algorithm:62, from /usr/include/c++/7/ext/algorithm:61, from kmer_counter/defs.h:125, from kmer_counter/kmc.h:14, from kmer_counter/kmer_counter.cpp:18: /usr/include/c++/7/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: /usr/include/c++/7/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/7/algorithm:62:0, from /usr/include/c++/7/ext/algorithm:61, from kmer_counter/defs.h:125, from kmer_counter/kmc.h:14, from kmer_counter/kmer_counter.cpp:18: /usr/include/c++/7/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: /usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h: In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: /usr/include/c++/7/bits/stl_algo.h:1963:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __sort(_RandomAccessIterator __first, _RandomAccessIterator __last, ^~~~~~ /usr/include/c++/7/bits/stl_algo.h:1963:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/7/bits/stl_algo.h:1971:31: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__final_insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h: In member function ‘void CKMC::SetThreads1Stage() [with KMER_T = CKmerQuake<1>; unsigned int SIZE = 1; bool QUAKE_MODE = true]’: /usr/include/c++/7/bits/stl_algo.h:4868:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h: In member function ‘void CKMC::SetThreads1Stage() [with KMER_T = CKmerQuake<2>; unsigned int SIZE = 2; bool QUAKE_MODE = true]’: /usr/include/c++/7/bits/stl_algo.h:4868:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h: In member function ‘void CKMC::SetThreads1Stage() [with KMER_T = CKmerQuake<3>; unsigned int SIZE = 3; bool QUAKE_MODE = true]’: /usr/include/c++/7/bits/stl_algo.h:4868:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h: In member function ‘void CKMC::SetThreads1Stage() [with KMER_T = CKmerQuake<4>; unsigned int SIZE = 4; bool QUAKE_MODE = true]’: /usr/include/c++/7/bits/stl_algo.h:4868:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h: In member function ‘void CKMC::SetThreads1Stage() [with KMER_T = CKmerQuake<5>; unsigned int SIZE = 5; bool QUAKE_MODE = true]’: /usr/include/c++/7/bits/stl_algo.h:4868:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h: In member function ‘void CKMC::SetThreads1Stage() [with KMER_T = CKmerQuake<6>; unsigned int SIZE = 6; bool QUAKE_MODE = true]’: /usr/include/c++/7/bits/stl_algo.h:4868:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h: In member function ‘void CKMC::SetThreads1Stage() [with KMER_T = CKmerQuake<7>; unsigned int SIZE = 7; bool QUAKE_MODE = true]’: /usr/include/c++/7/bits/stl_algo.h:4868:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h: In member function ‘void CKMC::SetThreads1Stage() [with KMER_T = CKmerQuake<8>; unsigned int SIZE = 8; bool QUAKE_MODE = true]’: /usr/include/c++/7/bits/stl_algo.h:4868:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h: In member function ‘void CKMC::SetThreads1Stage() [with KMER_T = CKmer<2>; unsigned int SIZE = 2; bool QUAKE_MODE = false]’: /usr/include/c++/7/bits/stl_algo.h:4868:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h: In member function ‘void CKMC::SetThreads1Stage() [with KMER_T = CKmer<3>; unsigned int SIZE = 3; bool QUAKE_MODE = false]’: /usr/include/c++/7/bits/stl_algo.h:4868:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h: In member function ‘void CKMC::SetThreads1Stage() [with KMER_T = CKmer<4>; unsigned int SIZE = 4; bool QUAKE_MODE = false]’: /usr/include/c++/7/bits/stl_algo.h:4868:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h: In member function ‘void CKMC::SetThreads1Stage() [with KMER_T = CKmer<5>; unsigned int SIZE = 5; bool QUAKE_MODE = false]’: /usr/include/c++/7/bits/stl_algo.h:4868:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h: In member function ‘void CKMC::SetThreads1Stage() [with KMER_T = CKmer<6>; unsigned int SIZE = 6; bool QUAKE_MODE = false]’: /usr/include/c++/7/bits/stl_algo.h:4868:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h: In member function ‘void CKMC::SetThreads1Stage() [with KMER_T = CKmer<7>; unsigned int SIZE = 7; bool QUAKE_MODE = false]’: /usr/include/c++/7/bits/stl_algo.h:4868:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h: In member function ‘void CKMC::SetThreads1Stage() [with KMER_T = CKmer<8>; unsigned int SIZE = 8; bool QUAKE_MODE = false]’: /usr/include/c++/7/bits/stl_algo.h:4868:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/map:61:0, from kmer_counter/queues.h:20, from kmer_counter/params.h:15, from kmer_counter/kmc.h:15, from kmer_counter/kmer_counter.cpp:18: /usr/include/c++/7/bits/stl_map.h: In member function ‘void CKmerBinReader::ProcessBins() [with KMER_T = CKmerQuake<5>; unsigned int SIZE = 5]’: /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ In file included from /usr/include/c++/7/algorithm:62:0, from /usr/include/c++/7/ext/algorithm:61, from kmer_counter/defs.h:125, from kmer_counter/kmc.h:14, from kmer_counter/kmer_counter.cpp:18: /usr/include/c++/7/bits/stl_algo.h: In member function ‘bool CKMC::Process() [with KMER_T = CKmerQuake<2>; unsigned int SIZE = 2; bool QUAKE_MODE = true]’: /usr/include/c++/7/bits/stl_algo.h:4868:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h: In member function ‘void CKMC::SetThreads1Stage() [with KMER_T = CKmer<1>; unsigned int SIZE = 1; bool QUAKE_MODE = false]’: /usr/include/c++/7/bits/stl_algo.h:4868:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/map:61:0, from kmer_counter/queues.h:20, from kmer_counter/params.h:15, from kmer_counter/kmc.h:15, from kmer_counter/kmer_counter.cpp:18: /usr/include/c++/7/bits/stl_map.h: In member function ‘void CKmerBinReader::ProcessBins() [with KMER_T = CKmer<5>; unsigned int SIZE = 5]’: /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ In file included from /usr/include/c++/7/algorithm:62:0, from /usr/include/c++/7/ext/algorithm:61, from kmer_counter/defs.h:125, from kmer_counter/kmc.h:14, from kmer_counter/kmer_counter.cpp:18: /usr/include/c++/7/bits/stl_algo.h: In member function ‘bool CKMC::Process() [with KMER_T = CKmer<2>; unsigned int SIZE = 2; bool QUAKE_MODE = false]’: /usr/include/c++/7/bits/stl_algo.h:4868:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/map:61:0, from kmer_counter/queues.h:20, from kmer_counter/params.h:15, from kmer_counter/kmc.h:15, from kmer_counter/kmer_counter.cpp:18: /usr/include/c++/7/bits/stl_map.h: In member function ‘void CKmerBinReader::ProcessBins() [with KMER_T = CKmerQuake<4>; unsigned int SIZE = 4]’: /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ In file included from /usr/include/c++/7/algorithm:62:0, from /usr/include/c++/7/ext/algorithm:61, from kmer_counter/defs.h:125, from kmer_counter/kmc.h:14, from kmer_counter/kmer_counter.cpp:18: /usr/include/c++/7/bits/stl_algo.h: In member function ‘bool CKMC::Process() [with KMER_T = CKmerQuake<1>; unsigned int SIZE = 1; bool QUAKE_MODE = true]’: /usr/include/c++/7/bits/stl_algo.h:4868:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/map:61:0, from kmer_counter/queues.h:20, from kmer_counter/params.h:15, from kmer_counter/kmc.h:15, from kmer_counter/kmer_counter.cpp:18: /usr/include/c++/7/bits/stl_map.h: In member function ‘void CKmerBinReader::ProcessBins() [with KMER_T = CKmer<4>; unsigned int SIZE = 4]’: /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ In file included from /usr/include/c++/7/algorithm:62:0, from /usr/include/c++/7/ext/algorithm:61, from kmer_counter/defs.h:125, from kmer_counter/kmc.h:14, from kmer_counter/kmer_counter.cpp:18: /usr/include/c++/7/bits/stl_algo.h: In member function ‘bool CKMC::Process() [with KMER_T = CKmer<1>; unsigned int SIZE = 1; bool QUAKE_MODE = false]’: /usr/include/c++/7/bits/stl_algo.h:4868:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/map:61:0, from kmer_counter/queues.h:20, from kmer_counter/params.h:15, from kmer_counter/kmc.h:15, from kmer_counter/kmer_counter.cpp:18: /usr/include/c++/7/bits/stl_map.h: In member function ‘void CKmerBinReader::ProcessBins() [with KMER_T = CKmerQuake<3>; unsigned int SIZE = 3]’: /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h: In member function ‘void CKmerBinReader::ProcessBins() [with KMER_T = CKmer<3>; unsigned int SIZE = 3]’: /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h: In member function ‘void CKmerBinReader::ProcessBins() [with KMER_T = CKmerQuake<2>; unsigned int SIZE = 2]’: /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h: In member function ‘void CKmerBinReader::ProcessBins() [with KMER_T = CKmer<2>; unsigned int SIZE = 2]’: /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h: In member function ‘void CKmerBinReader::ProcessBins() [with KMER_T = CKmerQuake<1>; unsigned int SIZE = 1]’: /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h: In member function ‘void CKmerBinReader::ProcessBins() [with KMER_T = CKmer<1>; unsigned int SIZE = 1]’: /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator {aka std::_Rb_tree_const_iterator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ mkdir -p bin g++ -o bin/kmc kmer_counter/kmer_counter.o kmer_counter/mmer.o kmer_counter/mem_disk_file.o kmer_counter/rev_byte.o kmer_counter/bkb_writer.o kmer_counter/bkb_reader.o kmer_counter/fastq_reader.o kmer_counter/timer.o kmer_counter/radix.o kmer_counter/kb_completer.o kmer_counter/kb_storer.o kmer_counter/kmer.o kmer_counter/prob_qual.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lm -lz -lbz2 -fopenmp -lpthread make[1]: Leaving directory '/<>/kmc-2.3+dfsg' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a rm -f -- debian/kmc.substvars debian/libkmc-dev.substvars rm -fr -- debian/.debhelper/generated/kmc/ debian/kmc/ debian/tmp/ debian/.debhelper/generated/libkmc-dev/ debian/libkmc-dev/ dh_auto_install -a install -d /<>/kmc-2.3\+dfsg/debian/tmp debian/rules override_dh_install make[1]: Entering directory '/<>/kmc-2.3+dfsg' dh_install install -d debian/kmc//bin cp --reflink=auto -a ./bin/kmc ./bin/kmc_dump ./bin/kmc_tools debian/kmc//bin/ install -d debian/.debhelper/generated/kmc install -d debian/libkmc-dev/usr/include/kmc cp --reflink=auto -a ./kmc_api/kmc_file.h ./kmc_api/kmer_api.h ./kmc_api/kmer_defs.h ./kmc_api/mmer.h ./kmc_api/stdafx.h debian/libkmc-dev/usr/include/kmc/ install -d debian/libkmc-dev/usr/lib/arm-linux-gnueabihf cp --reflink=auto -a ./libkmc.a debian/libkmc-dev/usr/lib/arm-linux-gnueabihf/ install -d debian/.debhelper/generated/libkmc-dev make[1]: Leaving directory '/<>/kmc-2.3+dfsg' dh_installdocs -a install -d debian/kmc/usr/share/doc/kmc install -p -m0644 debian/copyright debian/kmc/usr/share/doc/kmc/copyright install -d debian/libkmc-dev/usr/share/doc/libkmc-dev install -p -m0644 debian/copyright debian/libkmc-dev/usr/share/doc/libkmc-dev/copyright dh_installchangelogs -a install -p -m0644 debian/changelog debian/libkmc-dev/usr/share/doc/libkmc-dev/changelog.Debian install -p -m0644 debian/changelog debian/kmc/usr/share/doc/kmc/changelog.Debian rm -f debian/kmc.debhelper.log debian/libkmc-dev.debhelper.log debian/rules override_dh_installman make[1]: Entering directory '/<>/kmc-2.3+dfsg' mkdir -p /<>/kmc-2.3+dfsg/debian/man /<>/kmc-2.3+dfsg/debian/usage_to_man Can't exec "1": No such file or directory at /<>/kmc-2.3+dfsg/debian/usage_to_man line 19. Creating manpages Manpage creation complete Manpage creation complete asciidoctor -a docdate='' -b manpage /<>/kmc-2.3+dfsg/debian/man_src/*.adoc cp /<>/kmc-2.3+dfsg/debian/man_src/*.? /<>/kmc-2.3+dfsg/debian/man dh_installman -- install -d debian/kmc/usr/share/man/man1/ install -p -m0644 ./man/kmc.1 debian/kmc/usr/share/man/man1/kmc.1 install -p -m0644 ./man/kmc_dump.1 debian/kmc/usr/share/man/man1/kmc_dump.1 install -p -m0644 ./debian/man/kmc_tools-compact.1 debian/kmc/usr/share/man/man1/kmc_tools-compact.1 install -p -m0644 ./debian/man/kmc_tools-complex.1 debian/kmc/usr/share/man/man1/kmc_tools-complex.1 install -p -m0644 ./debian/man/kmc_tools-counters_subtract.1 debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1 install -p -m0644 ./debian/man/kmc_tools-dump.1 debian/kmc/usr/share/man/man1/kmc_tools-dump.1 install -p -m0644 ./debian/man/kmc_tools-filter.1 debian/kmc/usr/share/man/man1/kmc_tools-filter.1 install -p -m0644 ./debian/man/kmc_tools-histogram.1 debian/kmc/usr/share/man/man1/kmc_tools-histogram.1 install -p -m0644 ./debian/man/kmc_tools-intersect.1 debian/kmc/usr/share/man/man1/kmc_tools-intersect.1 install -p -m0644 ./debian/man/kmc_tools-kmers_subtract.1 debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1 install -p -m0644 ./debian/man/kmc_tools-sort.1 debian/kmc/usr/share/man/man1/kmc_tools-sort.1 install -p -m0644 ./debian/man/kmc_tools-union.1 debian/kmc/usr/share/man/man1/kmc_tools-union.1 install -p -m0644 ./debian/man/kmc_tools.1 debian/kmc/usr/share/man/man1/kmc_tools.1 man -l --recode UTF-8 ./debian/kmc/usr/share/man/man1/kmc_tools.1 > debian/kmc/usr/share/man/man1/kmc_tools.1.dh-new man -l --recode UTF-8 ./debian/kmc/usr/share/man/man1/kmc_tools-sort.1 > debian/kmc/usr/share/man/man1/kmc_tools-sort.1.dh-new man -l --recode UTF-8 ./debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1 > debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1.dh-new man -l --recode UTF-8 ./debian/kmc/usr/share/man/man1/kmc_tools-complex.1 > debian/kmc/usr/share/man/man1/kmc_tools-complex.1.dh-new mv debian/kmc/usr/share/man/man1/kmc_tools-sort.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-sort.1 man -l --recode UTF-8 ./debian/kmc/usr/share/man/man1/kmc_dump.1 > debian/kmc/usr/share/man/man1/kmc_dump.1.dh-new mv debian/kmc/usr/share/man/man1/kmc_tools.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools.1 man -l --recode UTF-8 ./debian/kmc/usr/share/man/man1/kmc_tools-compact.1 > debian/kmc/usr/share/man/man1/kmc_tools-compact.1.dh-new mv debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1 chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1 mv debian/kmc/usr/share/man/man1/kmc_tools-complex.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-complex.1 man -l --recode UTF-8 ./debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1 > debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1.dh-new mv debian/kmc/usr/share/man/man1/kmc_dump.1.dh-new debian/kmc/usr/share/man/man1/kmc_dump.1 man -l --recode UTF-8 ./debian/kmc/usr/share/man/man1/kmc_tools-dump.1 > debian/kmc/usr/share/man/man1/kmc_tools-dump.1.dh-new mv debian/kmc/usr/share/man/man1/kmc_tools-compact.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-compact.1 man -l --recode UTF-8 ./debian/kmc/usr/share/man/man1/kmc.1 > debian/kmc/usr/share/man/man1/kmc.1.dh-new mv debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1 man -l --recode UTF-8 ./debian/kmc/usr/share/man/man1/kmc_tools-union.1 > debian/kmc/usr/share/man/man1/kmc_tools-union.1.dh-new mv debian/kmc/usr/share/man/man1/kmc.1.dh-new debian/kmc/usr/share/man/man1/kmc.1 man -l --recode UTF-8 ./debian/kmc/usr/share/man/man1/kmc_tools-filter.1 > debian/kmc/usr/share/man/man1/kmc_tools-filter.1.dh-new mv debian/kmc/usr/share/man/man1/kmc_tools-union.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-union.1 man -l --recode UTF-8 ./debian/kmc/usr/share/man/man1/kmc_tools-histogram.1 > debian/kmc/usr/share/man/man1/kmc_tools-histogram.1.dh-new mv debian/kmc/usr/share/man/man1/kmc_tools-dump.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-dump.1 man -l --recode UTF-8 ./debian/kmc/usr/share/man/man1/kmc_tools-intersect.1 > debian/kmc/usr/share/man/man1/kmc_tools-intersect.1.dh-new mv debian/kmc/usr/share/man/man1/kmc_tools-filter.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-filter.1 chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools.1 debian/kmc/usr/share/man/man1/kmc_tools-compact.1 debian/kmc/usr/share/man/man1/kmc.1 debian/kmc/usr/share/man/man1/kmc_tools-filter.1 mv debian/kmc/usr/share/man/man1/kmc_tools-intersect.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-intersect.1 chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-sort.1 debian/kmc/usr/share/man/man1/kmc_dump.1 debian/kmc/usr/share/man/man1/kmc_tools-dump.1 debian/kmc/usr/share/man/man1/kmc_tools-intersect.1 mv debian/kmc/usr/share/man/man1/kmc_tools-histogram.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-histogram.1 chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-complex.1 debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1 debian/kmc/usr/share/man/man1/kmc_tools-union.1 debian/kmc/usr/share/man/man1/kmc_tools-histogram.1 make[1]: Leaving directory '/<>/kmc-2.3+dfsg' dh_perl -a dh_link -a dh_strip_nondeterminism -a Using 1531337703 as canonical time Normalizing debian/libkmc-dev/usr/lib/arm-linux-gnueabihf/libkmc.a using File::StripNondeterminism::handlers::ar dh_compress -a cd debian/kmc cd debian/libkmc-dev chmod a-x usr/share/doc/libkmc-dev/changelog.Debian gzip -9nf usr/share/doc/libkmc-dev/changelog.Debian chmod a-x usr/share/doc/kmc/changelog.Debian usr/share/man/man1/kmc.1 usr/share/man/man1/kmc_dump.1 usr/share/man/man1/kmc_tools-compact.1 usr/share/man/man1/kmc_tools-complex.1 usr/share/man/man1/kmc_tools-counters_subtract.1 usr/share/man/man1/kmc_tools-dump.1 usr/share/man/man1/kmc_tools-filter.1 usr/share/man/man1/kmc_tools-histogram.1 usr/share/man/man1/kmc_tools-intersect.1 usr/share/man/man1/kmc_tools-kmers_subtract.1 usr/share/man/man1/kmc_tools-sort.1 usr/share/man/man1/kmc_tools-union.1 usr/share/man/man1/kmc_tools.1 cd '/<>/kmc-2.3+dfsg' gzip -9nf usr/share/doc/kmc/changelog.Debian usr/share/man/man1/kmc.1 usr/share/man/man1/kmc_dump.1 usr/share/man/man1/kmc_tools-compact.1 usr/share/man/man1/kmc_tools-complex.1 usr/share/man/man1/kmc_tools-counters_subtract.1 usr/share/man/man1/kmc_tools-dump.1 usr/share/man/man1/kmc_tools-filter.1 usr/share/man/man1/kmc_tools-histogram.1 usr/share/man/man1/kmc_tools-intersect.1 usr/share/man/man1/kmc_tools-kmers_subtract.1 usr/share/man/man1/kmc_tools-sort.1 usr/share/man/man1/kmc_tools-union.1 usr/share/man/man1/kmc_tools.1 cd '/<>/kmc-2.3+dfsg' dh_fixperms -a find debian/kmc -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/libkmc-dev -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/kmc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libkmc-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/kmc/usr/share/doc -type f -a -true -a ! -regex 'debian/kmc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libkmc-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libkmc-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/kmc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libkmc-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/kmc/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libkmc-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/kmc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libkmc-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/kmc/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/libkmc-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing -a dh_strip -a strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives debian/libkmc-dev/usr/lib/arm-linux-gnueabihf/libkmc.a install -d debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/3f objcopy --only-keep-debug --compress-debug-sections debian/kmc/bin/kmc debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/3f/d75113ac40397b59c7eea65bb73bb9112e3063.debug chmod 0644 -- debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/3f/d75113ac40397b59c7eea65bb73bb9112e3063.debug chown 0:0 -- debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/3f/d75113ac40397b59c7eea65bb73bb9112e3063.debug strip --remove-section=.comment --remove-section=.note debian/kmc/bin/kmc objcopy --add-gnu-debuglink debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/3f/d75113ac40397b59c7eea65bb73bb9112e3063.debug debian/kmc/bin/kmc install -d debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/d7 objcopy --only-keep-debug --compress-debug-sections debian/kmc/bin/kmc_tools debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/d7/9aab24acd8d483117f8e4191e3697423a246c5.debug chmod 0644 -- debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/d7/9aab24acd8d483117f8e4191e3697423a246c5.debug chown 0:0 -- debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/d7/9aab24acd8d483117f8e4191e3697423a246c5.debug strip --remove-section=.comment --remove-section=.note debian/kmc/bin/kmc_tools objcopy --add-gnu-debuglink debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/d7/9aab24acd8d483117f8e4191e3697423a246c5.debug debian/kmc/bin/kmc_tools install -d debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/82 objcopy --only-keep-debug --compress-debug-sections debian/kmc/bin/kmc_dump debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/82/dd2815e85888b66dfe6cdc0f62c4389853ce96.debug chmod 0644 -- debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/82/dd2815e85888b66dfe6cdc0f62c4389853ce96.debug chown 0:0 -- debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/82/dd2815e85888b66dfe6cdc0f62c4389853ce96.debug strip --remove-section=.comment --remove-section=.note debian/kmc/bin/kmc_dump objcopy --add-gnu-debuglink debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/82/dd2815e85888b66dfe6cdc0f62c4389853ce96.debug debian/kmc/bin/kmc_dump install -d debian/.debhelper/kmc/dbgsym-root/usr/share/doc ln -s kmc debian/.debhelper/kmc/dbgsym-root/usr/share/doc/kmc-dbgsym dh_makeshlibs -a rm -f debian/kmc/DEBIAN/shlibs rm -f debian/libkmc-dev/DEBIAN/shlibs dh_shlibdeps -a install -d debian/kmc/DEBIAN dpkg-shlibdeps -Tdebian/kmc.substvars debian/kmc/bin/kmc debian/kmc/bin/kmc_tools debian/kmc/bin/kmc_dump dh_installdeb -a install -d debian/libkmc-dev/DEBIAN dh_gencontrol -a echo misc:Depends= >> debian/libkmc-dev.substvars echo misc:Pre-Depends= >> debian/libkmc-dev.substvars dpkg-gencontrol -plibkmc-dev -ldebian/changelog -Tdebian/libkmc-dev.substvars -Pdebian/libkmc-dev -UMulti-Arch echo misc:Depends= >> debian/kmc.substvars echo misc:Pre-Depends= >> debian/kmc.substvars install -d debian/.debhelper/kmc/dbgsym-root/DEBIAN dpkg-gencontrol -pkmc -ldebian/changelog -Tdebian/kmc.substvars -Pdebian/.debhelper/kmc/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -DPackage=kmc-dbgsym "-DDepends=kmc (= \${binary:Version})" "-DDescription=debug symbols for kmc" "-DBuild-Ids=3fd75113ac40397b59c7eea65bb73bb9112e3063 82dd2815e85888b66dfe6cdc0f62c4389853ce96 d79aab24acd8d483117f8e4191e3697423a246c5" -DSection=debug -DPackage-Type=ddeb -UMulti-Arch -UReplaces -UBreaks dpkg-gencontrol: warning: Depends field of package libkmc-dev: unknown substitution variable ${shlibs:Depends} chmod 0644 -- debian/libkmc-dev/DEBIAN/control chown 0:0 -- debian/libkmc-dev/DEBIAN/control chmod 0644 -- debian/.debhelper/kmc/dbgsym-root/DEBIAN/control chown 0:0 -- debian/.debhelper/kmc/dbgsym-root/DEBIAN/control dpkg-gencontrol -pkmc -ldebian/changelog -Tdebian/kmc.substvars -Pdebian/kmc -UMulti-Arch chmod 0644 -- debian/kmc/DEBIAN/control chown 0:0 -- debian/kmc/DEBIAN/control dh_md5sums -a (cd debian/kmc >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums) >/dev/null (cd debian/libkmc-dev >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums) >/dev/null chmod 0644 -- debian/libkmc-dev/DEBIAN/md5sums chown 0:0 -- debian/libkmc-dev/DEBIAN/md5sums chmod 0644 -- debian/kmc/DEBIAN/md5sums chown 0:0 -- debian/kmc/DEBIAN/md5sums (cd debian/.debhelper/kmc/dbgsym-root >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums) >/dev/null chmod 0644 -- debian/.debhelper/kmc/dbgsym-root/DEBIAN/md5sums chown 0:0 -- debian/.debhelper/kmc/dbgsym-root/DEBIAN/md5sums dh_builddeb -a dpkg-deb --build debian/kmc .. dpkg-deb --build debian/libkmc-dev .. install -d debian/.debhelper/scratch-space/build-kmc dpkg-deb --build debian/.debhelper/kmc/dbgsym-root debian/.debhelper/scratch-space/build-kmc INFO: pkgstriptranslations version 139 INFO: pkgstriptranslations version 139 INFO: pkgstriptranslations version 139 pkgstriptranslations: processing libkmc-dev (in debian/libkmc-dev); do_strip: , oemstrip: pkgstriptranslations: processing kmc (in debian/kmc); do_strip: , oemstrip: pkgstriptranslations: processing kmc-dbgsym (in debian/.debhelper/kmc/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libkmc-dev/DEBIAN/control, package libkmc-dev, directory debian/libkmc-dev INFO: pkgstripfiles: waiting for lock (libkmc-dev) ... pkgstripfiles: processing control file: debian/.debhelper/kmc/dbgsym-root/DEBIAN/control, package kmc-dbgsym, directory debian/.debhelper/kmc/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package kmc-dbgsym ... pkgstripfiles: No PNG files. dpkg-deb: building package 'kmc-dbgsym' in 'debian/.debhelper/scratch-space/build-kmc/kmc-dbgsym_2.3+dfsg-6_armhf.deb'. INFO: pkgstripfiles: waiting for lock (libkmc-dev) ... INFO: pkgstripfiles: waiting for lock (libkmc-dev) ... INFO: pkgstripfiles: waiting for lock (libkmc-dev) ... INFO: pkgstripfiles: waiting for lock (libkmc-dev) ... pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/kmc/DEBIAN/control, package kmc, directory debian/kmc pkgstripfiles: Running PNG optimization (using 4 cpus) for package kmc ... pkgstripfiles: No PNG files. pkgstripfiles: Running PNG optimization (using 4 cpus) for package libkmc-dev ... dpkg-deb: building package 'kmc' in '../kmc_2.3+dfsg-6_armhf.deb'. pkgstripfiles: No PNG files. dpkg-deb: building package 'libkmc-dev' in '../libkmc-dev_2.3+dfsg-6_armhf.deb'. Renaming kmc-dbgsym_2.3+dfsg-6_armhf.deb to kmc-dbgsym_2.3+dfsg-6_armhf.ddeb mv debian/.debhelper/scratch-space/build-kmc/kmc-dbgsym_2.3\+dfsg-6_armhf.deb ../kmc-dbgsym_2.3\+dfsg-6_armhf.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../kmc_2.3+dfsg-6_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build kmc-2.3+dfsg dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20180712-0516 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ kmc_2.3+dfsg-6_armhf.changes: ----------------------------- Format: 1.8 Date: Wed, 11 Jul 2018 21:35:03 +0200 Source: kmc Binary: kmc libkmc-dev Architecture: armhf Version: 2.3+dfsg-6 Distribution: cosmic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: kmc - count kmers in genomic sequences libkmc-dev - library to access KMC k-mer count files Changes: kmc (2.3+dfsg-6) unstable; urgency=medium . * Drop unneeded get-orig-source target * debhelper 11 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.1.5 * Drop unnecessary Testsuite: autopkgtest * Do not parse d/changelog * Fix spelling Checksums-Sha1: 74939fe68e03a9a08f2d181a2a844eed8a37863e 6947304 kmc-dbgsym_2.3+dfsg-6_armhf.ddeb f6f9363149b437cef55457d236791211e180420d 6192 kmc_2.3+dfsg-6_armhf.buildinfo 308088f8fe871931a099df385936dc718f32ade5 509556 kmc_2.3+dfsg-6_armhf.deb a983c1b6bcc6b858ad7b041c1d25a4fae3229201 27192 libkmc-dev_2.3+dfsg-6_armhf.deb Checksums-Sha256: 91f66934d5c51158c943359ef0fcf585c5cd7a1eb5e8a39cfc84ef8c1eaa7811 6947304 kmc-dbgsym_2.3+dfsg-6_armhf.ddeb 311cfb9768e78965aa04339142a1a34cc30fd518d2423782946053073ec39b13 6192 kmc_2.3+dfsg-6_armhf.buildinfo 256a824287ae79ea4d07af30f483a9611ecd16c9a866c614f68dfeff6e6f8b6b 509556 kmc_2.3+dfsg-6_armhf.deb 6663bbb5d2cb5d25154958bd665be24d5e30d4806087cfafc00fc8d2cda11b92 27192 libkmc-dev_2.3+dfsg-6_armhf.deb Files: e547da92a871deea7fce7abf1f5a36bc 6947304 debug optional kmc-dbgsym_2.3+dfsg-6_armhf.ddeb 5b51af0b9c9641963df89e51efc77b6e 6192 science optional kmc_2.3+dfsg-6_armhf.buildinfo 0b698aca0ad843f118a3e1f5e60d483e 509556 science optional kmc_2.3+dfsg-6_armhf.deb 30fcc08b202704a4adaa19dc1bbd28ce 27192 libdevel optional libkmc-dev_2.3+dfsg-6_armhf.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ kmc_2.3+dfsg-6_armhf.deb ------------------------ new debian package, version 2.0. size 509556 bytes: control archive=1736 bytes. 1687 bytes, 32 lines control 1240 bytes, 18 lines md5sums Package: kmc Version: 2.3+dfsg-6 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1614 Depends: libbz2-1.0, libc6 (>= 2.4), libgcc1 (>= 1:3.5), libgomp1 (>= 4.9), libstdc++6 (>= 6), zlib1g (>= 1:1.2.6) Section: science Priority: optional Homepage: http://sun.aei.polsl.pl/kmc Description: count kmers in genomic sequences The kmc software is designed for counting k-mers (sequences of consecutive k symbols) in a set of reads. K-mer counting is important for many bioinformatics applications, e.g. developing de Bruijn graph assemblers. . Building de Bruijn graphs is a commonly used approach for genome assembly with data from second-generation sequencing. Unfortunately, sequencing errors (frequent in practice) result in huge memory requirements for de Bruijn graphs, as well as long build time. One of the popular approaches to handle this problem is filtering the input reads in such a way that unique k-mers (very likely obtained as a result of an error) are discarded. . Thus, KMC scans the raw reads and produces a compact representation of all non-unique reads accompanied with number of their occurrences. The algorithm implemented in KMC makes use mostly of disk space rather than RAM, which allows one to use KMC even on rather typical personal computers. When run on high-end servers (what is necessary for KMC competitors) it outperforms them in both memory requirements and speed of computation. The disk space necessary for computation is in order of the size of input data (usually it is smaller). drwxr-xr-x root/root 0 2018-07-11 19:35 ./ drwxr-xr-x root/root 0 2018-07-11 19:35 ./bin/ -rwxr-xr-x root/root 1055844 2018-07-11 19:35 ./bin/kmc -rwxr-xr-x root/root 34568 2018-07-11 19:35 ./bin/kmc_dump -rwxr-xr-x root/root 530756 2018-07-11 19:35 ./bin/kmc_tools drwxr-xr-x root/root 0 2018-07-11 19:35 ./usr/ drwxr-xr-x root/root 0 2018-07-11 19:35 ./usr/share/ drwxr-xr-x root/root 0 2018-07-11 19:35 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-07-11 19:35 ./usr/share/doc/kmc/ -rw-r--r-- root/root 955 2018-07-11 19:35 ./usr/share/doc/kmc/changelog.Debian.gz -rw-r--r-- root/root 1210 2018-07-11 19:35 ./usr/share/doc/kmc/copyright drwxr-xr-x root/root 0 2018-07-11 19:35 ./usr/share/man/ drwxr-xr-x root/root 0 2018-07-11 19:35 ./usr/share/man/man1/ -rw-r--r-- root/root 1134 2018-07-11 19:35 ./usr/share/man/man1/kmc.1.gz -rw-r--r-- root/root 614 2018-07-11 19:35 ./usr/share/man/man1/kmc_dump.1.gz -rw-r--r-- root/root 833 2018-07-11 19:35 ./usr/share/man/man1/kmc_tools-compact.1.gz -rw-r--r-- root/root 1314 2018-07-11 19:35 ./usr/share/man/man1/kmc_tools-complex.1.gz -rw-r--r-- root/root 1011 2018-07-11 19:35 ./usr/share/man/man1/kmc_tools-counters_subtract.1.gz -rw-r--r-- root/root 859 2018-07-11 19:35 ./usr/share/man/man1/kmc_tools-dump.1.gz -rw-r--r-- root/root 1026 2018-07-11 19:35 ./usr/share/man/man1/kmc_tools-filter.1.gz -rw-r--r-- root/root 823 2018-07-11 19:35 ./usr/share/man/man1/kmc_tools-histogram.1.gz -rw-r--r-- root/root 968 2018-07-11 19:35 ./usr/share/man/man1/kmc_tools-intersect.1.gz -rw-r--r-- root/root 972 2018-07-11 19:35 ./usr/share/man/man1/kmc_tools-kmers_subtract.1.gz -rw-r--r-- root/root 879 2018-07-11 19:35 ./usr/share/man/man1/kmc_tools-sort.1.gz -rw-r--r-- root/root 952 2018-07-11 19:35 ./usr/share/man/man1/kmc_tools-union.1.gz -rw-r--r-- root/root 1208 2018-07-11 19:35 ./usr/share/man/man1/kmc_tools.1.gz libkmc-dev_2.3+dfsg-6_armhf.deb ------------------------------- new debian package, version 2.0. size 27192 bytes: control archive=984 bytes. 693 bytes, 18 lines control 519 bytes, 8 lines md5sums Package: libkmc-dev Source: kmc Version: 2.3+dfsg-6 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 85 Section: libdevel Priority: optional Homepage: http://sun.aei.polsl.pl/kmc Description: library to access KMC k-mer count files The kmc software is designed for counting k-mers (sequences of consecutive k symbols) in a set of reads. K-mer counting is important for many bioinformatics applications, e.g. developing de Bruijn graph assemblers. . This package contains the C++ library headers for accessing kmc's output file format. drwxr-xr-x root/root 0 2018-07-11 19:35 ./ drwxr-xr-x root/root 0 2018-07-11 19:35 ./usr/ drwxr-xr-x root/root 0 2018-07-11 19:35 ./usr/include/ drwxr-xr-x root/root 0 2018-07-11 19:35 ./usr/include/kmc/ -rw-r--r-- root/root 5781 2015-09-10 15:25 ./usr/include/kmc/kmc_file.h -rw-r--r-- root/root 18341 2015-09-10 15:25 ./usr/include/kmc/kmer_api.h -rw-r--r-- root/root 1022 2015-09-10 15:25 ./usr/include/kmc/kmer_defs.h -rw-r--r-- root/root 4163 2015-09-10 15:25 ./usr/include/kmc/mmer.h -rw-r--r-- root/root 85 2015-09-10 15:25 ./usr/include/kmc/stdafx.h drwxr-xr-x root/root 0 2018-07-11 19:35 ./usr/lib/ drwxr-xr-x root/root 0 2018-07-11 19:35 ./usr/lib/arm-linux-gnueabihf/ -rw-r--r-- root/root 41180 2018-07-11 19:35 ./usr/lib/arm-linux-gnueabihf/libkmc.a drwxr-xr-x root/root 0 2018-07-11 19:35 ./usr/share/ drwxr-xr-x root/root 0 2018-07-11 19:35 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-07-11 19:35 ./usr/share/doc/libkmc-dev/ -rw-r--r-- root/root 955 2018-07-11 19:35 ./usr/share/doc/libkmc-dev/changelog.Debian.gz -rw-r--r-- root/root 1210 2018-07-11 19:35 ./usr/share/doc/libkmc-dev/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build-Space: 80816 Build-Time: 248 Distribution: cosmic-proposed Host Architecture: armhf Install-Time: 17 Job: kmc_2.3+dfsg-6.dsc Machine Architecture: arm64 Package: kmc Package-Time: 267 Source-Version: 2.3+dfsg-6 Space: 80816 Status: successful Version: 2.3+dfsg-6 -------------------------------------------------------------------------------- Finished at 20180712-0516 Build needed 00:04:27, 80816k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=cosmic --arch=armhf PACKAGEBUILD-15114657 Scanning for processes to kill in build PACKAGEBUILD-15114657