https://launchpad.net/ubuntu/+source/kissplice/2.4.0-p1-5ubuntu1/+build/18851928 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux lgw01-amd64-038 4.4.0-174-generic #204-Ubuntu SMP Wed Jan 29 06:41:01 UTC 2020 x86_64 Buildd toolchain package versions: launchpad-buildd_186 python-lpbuildd_186 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.7 dpkg-dev_1.18.4ubuntu1.6 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 18 Mar 14:09:36 ntpdate[1912]: adjust time server 10.211.37.1 offset -0.000695 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=focal --arch=amd64 PACKAGEBUILD-18851928 --image-type chroot /home/buildd/filecache-default/e96c25c651525abc9f0cabeb95ea71010abf4ecb Creating target for build PACKAGEBUILD-18851928 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=focal --arch=amd64 PACKAGEBUILD-18851928 Starting target for build PACKAGEBUILD-18851928 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=focal --arch=amd64 PACKAGEBUILD-18851928 'deb http://ftpmaster.internal/ubuntu focal main universe' 'deb http://ftpmaster.internal/ubuntu focal-security main universe' 'deb http://ftpmaster.internal/ubuntu focal-updates main universe' 'deb http://ftpmaster.internal/ubuntu focal-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-18851928 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=focal --arch=amd64 PACKAGEBUILD-18851928 Updating target for build PACKAGEBUILD-18851928 Get:1 http://ftpmaster.internal/ubuntu focal InRelease [255 kB] Get:2 http://ftpmaster.internal/ubuntu focal-security InRelease [79.7 kB] Get:3 http://ftpmaster.internal/ubuntu focal-updates InRelease [79.7 kB] Get:4 http://ftpmaster.internal/ubuntu focal-proposed InRelease [255 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main amd64 Packages [975 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main Translation-en [502 kB] Get:7 http://ftpmaster.internal/ubuntu focal/universe amd64 Packages [8623 kB] Get:8 http://ftpmaster.internal/ubuntu focal/universe Translation-en [5154 kB] Get:9 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 Packages [91.8 kB] Get:10 http://ftpmaster.internal/ubuntu focal-proposed/main Translation-en [39.9 kB] Get:11 http://ftpmaster.internal/ubuntu focal-proposed/universe amd64 Packages [352 kB] Get:12 http://ftpmaster.internal/ubuntu focal-proposed/universe Translation-en [189 kB] Fetched 16.6 MB in 4s (3702 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libffi6 libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: gcc-10-base libapt-pkg6.0 libcrypt-dev libcrypt1 libctf-nobfd0 libctf0 libffi7 libgcc-s1 libhogweed5 libisl22 libnettle7 libperl5.30 libprocps8 perl-modules-5.30 The following packages will be upgraded: apt base-files base-passwd bash binutils binutils-common binutils-x86-64-linux-gnu bsdutils bzip2 cpp-9 debianutils e2fsprogs fdisk findutils g++-9 gcc-9 gcc-9-base gpg gpg-agent gpgconf gpgv grep gzip hostname libacl1 libapparmor1 libapt-pkg5.90 libasan5 libassuan0 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcom-err2 libcryptsetup12 libdebconfclient0 libdevmapper1.02.1 libext2fs2 libfdisk1 libgcc-9-dev libgcc1 libgcrypt20 libgmp10 libgnutls30 libgomp1 libgpg-error0 libip4tc2 libitm1 libjson-c4 libkmod2 liblockfile-bin liblockfile1 liblsan0 liblz4-1 libmount1 libncurses6 libncursesw6 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libpng16-16 libquadmath0 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libsmartcols1 libsqlite3-0 libss2 libssl1.1 libstdc++-9-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo6 libtsan0 libubsan1 libudev1 libuuid1 libzstd1 linux-libc-dev login logsave lsb-base mawk mount ncurses-base ncurses-bin openssl passwd perl perl-base procps readline-common sensible-utils systemd systemd-sysv sysvinit-utils tzdata ubuntu-keyring util-linux zlib1g 117 upgraded, 14 newly installed, 0 to remove and 0 not upgraded. Need to get 70.0 MB of archives. After this operation, 51.6 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu focal/main amd64 gcc-10-base amd64 10-20200307-0ubuntu1 [18.7 kB] Get:2 http://ftpmaster.internal/ubuntu focal/main amd64 libgcc-s1 amd64 10-20200307-0ubuntu1 [41.5 kB] Get:3 http://ftpmaster.internal/ubuntu focal/main amd64 libc6-dev amd64 2.31-0ubuntu6 [2515 kB] Get:4 http://ftpmaster.internal/ubuntu focal/main amd64 libc-dev-bin amd64 2.31-0ubuntu6 [71.6 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main amd64 libcrypt-dev amd64 1:4.4.10-10ubuntu4 [104 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main amd64 linux-libc-dev amd64 5.4.0-18.22 [1156 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main amd64 libcrypt1 amd64 1:4.4.10-10ubuntu4 [78.2 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main amd64 libc6 amd64 2.31-0ubuntu6 [2715 kB] Get:9 http://ftpmaster.internal/ubuntu focal/main amd64 libc-bin amd64 2.31-0ubuntu6 [633 kB] Get:10 http://ftpmaster.internal/ubuntu focal/main amd64 base-files amd64 11ubuntu4 [60.2 kB] Get:11 http://ftpmaster.internal/ubuntu focal/main amd64 debianutils amd64 4.9.1 [85.8 kB] Get:12 http://ftpmaster.internal/ubuntu focal/main amd64 bash amd64 5.0-6ubuntu1 [638 kB] Get:13 http://ftpmaster.internal/ubuntu focal/main amd64 bsdutils amd64 1:2.34-0.1ubuntu8 [63.1 kB] Get:14 http://ftpmaster.internal/ubuntu focal/main amd64 findutils amd64 4.7.0-1ubuntu1 [329 kB] Get:15 http://ftpmaster.internal/ubuntu focal/main amd64 grep amd64 3.4-1 [151 kB] Get:16 http://ftpmaster.internal/ubuntu focal/main amd64 gzip amd64 1.10-0ubuntu4 [95.3 kB] Get:17 http://ftpmaster.internal/ubuntu focal/main amd64 hostname amd64 3.23 [11.4 kB] Get:18 http://ftpmaster.internal/ubuntu focal/main amd64 login amd64 1:4.8.1-1ubuntu3 [221 kB] Get:19 http://ftpmaster.internal/ubuntu focal/main amd64 libncurses6 amd64 6.2-0ubuntu2 [101 kB] Get:20 http://ftpmaster.internal/ubuntu focal/main amd64 libtinfo6 amd64 6.2-0ubuntu2 [87.0 kB] Get:21 http://ftpmaster.internal/ubuntu focal/main amd64 ncurses-bin amd64 6.2-0ubuntu2 [173 kB] Get:22 http://ftpmaster.internal/ubuntu focal/main amd64 libncursesw6 amd64 6.2-0ubuntu2 [132 kB] Get:23 http://ftpmaster.internal/ubuntu focal/main amd64 perl-modules-5.30 all 5.30.0-9build1 [2737 kB] Get:24 http://ftpmaster.internal/ubuntu focal/main amd64 libperl5.30 amd64 5.30.0-9build1 [3943 kB] Get:25 http://ftpmaster.internal/ubuntu focal/main amd64 perl amd64 5.30.0-9build1 [224 kB] Get:26 http://ftpmaster.internal/ubuntu focal/main amd64 perl-base amd64 5.30.0-9build1 [1511 kB] Get:27 http://ftpmaster.internal/ubuntu focal/main amd64 bzip2 amd64 1.0.8-2 [34.1 kB] Get:28 http://ftpmaster.internal/ubuntu focal/main amd64 libbz2-1.0 amd64 1.0.8-2 [32.3 kB] Get:29 http://ftpmaster.internal/ubuntu focal/main amd64 zlib1g amd64 1:1.2.11.dfsg-2ubuntu1 [53.7 kB] Get:30 http://ftpmaster.internal/ubuntu focal/main amd64 libblkid1 amd64 2.34-0.1ubuntu8 [137 kB] Get:31 http://ftpmaster.internal/ubuntu focal/main amd64 libuuid1 amd64 2.34-0.1ubuntu8 [20.1 kB] Get:32 http://ftpmaster.internal/ubuntu focal/main amd64 libfdisk1 amd64 2.34-0.1ubuntu8 [175 kB] Get:33 http://ftpmaster.internal/ubuntu focal/main amd64 libpcre2-8-0 amd64 10.34-7 [197 kB] Get:34 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libselinux1 amd64 3.0-1build2 [68.8 kB] Get:35 http://ftpmaster.internal/ubuntu focal/main amd64 libmount1 amd64 2.34-0.1ubuntu8 [149 kB] Get:36 http://ftpmaster.internal/ubuntu focal/main amd64 libsmartcols1 amd64 2.34-0.1ubuntu8 [100 kB] Get:37 http://ftpmaster.internal/ubuntu focal/main amd64 fdisk amd64 2.34-0.1ubuntu8 [120 kB] Get:38 http://ftpmaster.internal/ubuntu focal/main amd64 util-linux amd64 2.34-0.1ubuntu8 [1021 kB] Get:39 http://ftpmaster.internal/ubuntu focal/main amd64 libdebconfclient0 amd64 0.251ubuntu1 [6160 B] Get:40 http://ftpmaster.internal/ubuntu focal/main amd64 base-passwd amd64 3.5.47 [47.7 kB] Get:41 http://ftpmaster.internal/ubuntu focal/main amd64 ncurses-base all 6.2-0ubuntu2 [18.7 kB] Get:42 http://ftpmaster.internal/ubuntu focal/main amd64 lsb-base all 11.1.0ubuntu2 [12.1 kB] Get:43 http://ftpmaster.internal/ubuntu focal/main amd64 sysvinit-utils amd64 2.96-2.1ubuntu1 [20.6 kB] Get:44 http://ftpmaster.internal/ubuntu focal/main amd64 libgpg-error0 amd64 1.37-1 [58.0 kB] Get:45 http://ftpmaster.internal/ubuntu focal/main amd64 libgcrypt20 amd64 1.8.5-5ubuntu1 [419 kB] Get:46 http://ftpmaster.internal/ubuntu focal/main amd64 liblz4-1 amd64 1.9.2-2 [55.9 kB] Get:47 http://ftpmaster.internal/ubuntu focal/main amd64 libstdc++6 amd64 10-20200307-0ubuntu1 [502 kB] Get:48 http://ftpmaster.internal/ubuntu focal/main amd64 systemd-sysv amd64 244.3-1ubuntu1 [9372 B] Get:49 http://ftpmaster.internal/ubuntu focal/main amd64 libacl1 amd64 2.2.53-6 [18.8 kB] Get:50 http://ftpmaster.internal/ubuntu focal/main amd64 libapparmor1 amd64 2.13.3-7ubuntu2 [34.1 kB] Get:51 http://ftpmaster.internal/ubuntu focal/main amd64 libaudit-common all 1:2.8.5-2ubuntu6 [3936 B] Get:52 http://ftpmaster.internal/ubuntu focal/main amd64 libcap-ng0 amd64 0.7.9-2.1build1 [11.1 kB] Get:53 http://ftpmaster.internal/ubuntu focal/main amd64 libaudit1 amd64 1:2.8.5-2ubuntu6 [38.9 kB] Get:54 http://ftpmaster.internal/ubuntu focal/main amd64 libcap2 amd64 1:2.32-1 [15.9 kB] Get:55 http://ftpmaster.internal/ubuntu focal/main amd64 libudev1 amd64 244.3-1ubuntu1 [76.9 kB] Get:56 http://ftpmaster.internal/ubuntu focal/main amd64 libdevmapper1.02.1 amd64 2:1.02.167-1ubuntu1 [127 kB] Get:57 http://ftpmaster.internal/ubuntu focal/main amd64 libjson-c4 amd64 0.13.1+dfsg-7 [29.2 kB] Get:58 http://ftpmaster.internal/ubuntu focal/main amd64 libssl1.1 amd64 1.1.1d-2ubuntu6 [1318 kB] Get:59 http://ftpmaster.internal/ubuntu focal/main amd64 libcryptsetup12 amd64 2:2.2.2-3ubuntu2 [182 kB] Get:60 http://ftpmaster.internal/ubuntu focal/main amd64 libnettle7 amd64 3.5.1+really3.5.1-2 [114 kB] Get:61 http://ftpmaster.internal/ubuntu focal/main amd64 libgmp10 amd64 2:6.2.0+dfsg-4 [240 kB] Get:62 http://ftpmaster.internal/ubuntu focal/main amd64 libhogweed5 amd64 3.5.1+really3.5.1-2 [138 kB] Get:63 http://ftpmaster.internal/ubuntu focal/main amd64 libffi7 amd64 3.3-3 [19.6 kB] Get:64 http://ftpmaster.internal/ubuntu focal/main amd64 libp11-kit0 amd64 0.23.20-1build1 [188 kB] Get:65 http://ftpmaster.internal/ubuntu focal/main amd64 libtasn1-6 amd64 4.16.0-2 [38.1 kB] Get:66 http://ftpmaster.internal/ubuntu focal/main amd64 libgnutls30 amd64 3.6.11.1-2ubuntu2 [793 kB] Get:67 http://ftpmaster.internal/ubuntu focal/main amd64 libip4tc2 amd64 1.8.4-3ubuntu2 [18.8 kB] Get:68 http://ftpmaster.internal/ubuntu focal/main amd64 libkmod2 amd64 27-1ubuntu2 [44.3 kB] Get:69 http://ftpmaster.internal/ubuntu focal/main amd64 libpam0g amd64 1.3.1-5ubuntu4 [55.4 kB] Get:70 http://ftpmaster.internal/ubuntu focal/main amd64 libseccomp2 amd64 2.4.3-0ubuntu2 [40.0 kB] Get:71 http://ftpmaster.internal/ubuntu focal/main amd64 mount amd64 2.34-0.1ubuntu8 [115 kB] Get:72 http://ftpmaster.internal/ubuntu focal/main amd64 systemd amd64 244.3-1ubuntu1 [3682 kB] Get:73 http://ftpmaster.internal/ubuntu focal/main amd64 libsystemd0 amd64 244.3-1ubuntu1 [261 kB] Get:74 http://ftpmaster.internal/ubuntu focal/main amd64 libzstd1 amd64 1.4.4+dfsg-3 [237 kB] Get:75 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libapt-pkg6.0 amd64 2.0.0 [832 kB] Get:76 http://ftpmaster.internal/ubuntu focal/main amd64 libapt-pkg5.90 amd64 1.9.10 [852 kB] Get:77 http://ftpmaster.internal/ubuntu focal/main amd64 gpgv amd64 2.2.19-3ubuntu2 [200 kB] Get:78 http://ftpmaster.internal/ubuntu focal/main amd64 ubuntu-keyring all 2020.02.11.1 [22.3 kB] Get:79 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 apt amd64 2.0.0 [1285 kB] Get:80 http://ftpmaster.internal/ubuntu focal/main amd64 libpam-modules-bin amd64 1.3.1-5ubuntu4 [37.7 kB] Get:81 http://ftpmaster.internal/ubuntu focal/main amd64 libpam-modules amd64 1.3.1-5ubuntu4 [250 kB] Get:82 http://ftpmaster.internal/ubuntu focal/main amd64 logsave amd64 1.45.5-2ubuntu1 [10.2 kB] Get:83 http://ftpmaster.internal/ubuntu focal/main amd64 libext2fs2 amd64 1.45.5-2ubuntu1 [183 kB] Get:84 http://ftpmaster.internal/ubuntu focal/main amd64 e2fsprogs amd64 1.45.5-2ubuntu1 [527 kB] Get:85 http://ftpmaster.internal/ubuntu focal/main amd64 libattr1 amd64 1:2.4.48-5 [12.7 kB] Get:86 http://ftpmaster.internal/ubuntu focal/universe amd64 libgcc1 amd64 1:10-20200307-0ubuntu1 [41.4 kB] Get:87 http://ftpmaster.internal/ubuntu focal/main amd64 libpam-runtime all 1.3.1-5ubuntu4 [37.3 kB] Get:88 http://ftpmaster.internal/ubuntu focal/main amd64 libsepol1 amd64 3.0-1 [252 kB] Get:89 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libsemanage-common all 3.0-1build2 [9792 B] Get:90 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libsemanage1 amd64 3.0-1build2 [85.5 kB] Get:91 http://ftpmaster.internal/ubuntu focal/main amd64 passwd amd64 1:4.8.1-1ubuntu3 [797 kB] Get:92 http://ftpmaster.internal/ubuntu focal/main amd64 libisl22 amd64 0.22.1-1 [592 kB] Get:93 http://ftpmaster.internal/ubuntu focal/main amd64 libcc1-0 amd64 10-20200307-0ubuntu1 [41.3 kB] Get:94 http://ftpmaster.internal/ubuntu focal/main amd64 libctf-nobfd0 amd64 2.34-4ubuntu1 [47.0 kB] Get:95 http://ftpmaster.internal/ubuntu focal/main amd64 libctf0 amd64 2.34-4ubuntu1 [46.7 kB] Get:96 http://ftpmaster.internal/ubuntu focal/main amd64 libbinutils amd64 2.34-4ubuntu1 [475 kB] Get:97 http://ftpmaster.internal/ubuntu focal/main amd64 binutils-common amd64 2.34-4ubuntu1 [207 kB] Get:98 http://ftpmaster.internal/ubuntu focal/main amd64 binutils amd64 2.34-4ubuntu1 [3380 B] Get:99 http://ftpmaster.internal/ubuntu focal/main amd64 binutils-x86-64-linux-gnu amd64 2.34-4ubuntu1 [1612 kB] Get:100 http://ftpmaster.internal/ubuntu focal/main amd64 libgomp1 amd64 10-20200307-0ubuntu1 [101 kB] Get:101 http://ftpmaster.internal/ubuntu focal/main amd64 libitm1 amd64 10-20200307-0ubuntu1 [26.5 kB] Get:102 http://ftpmaster.internal/ubuntu focal/main amd64 libatomic1 amd64 10-20200307-0ubuntu1 [9300 B] Get:103 http://ftpmaster.internal/ubuntu focal/main amd64 libasan5 amd64 9.3.0-3ubuntu1 [395 kB] Get:104 http://ftpmaster.internal/ubuntu focal/main amd64 liblsan0 amd64 10-20200307-0ubuntu1 [144 kB] Get:105 http://ftpmaster.internal/ubuntu focal/main amd64 libtsan0 amd64 10-20200307-0ubuntu1 [320 kB] Get:106 http://ftpmaster.internal/ubuntu focal/main amd64 libubsan1 amd64 10-20200307-0ubuntu1 [136 kB] Get:107 http://ftpmaster.internal/ubuntu focal/main amd64 libquadmath0 amd64 10-20200307-0ubuntu1 [146 kB] Get:108 http://ftpmaster.internal/ubuntu focal/main amd64 g++-9 amd64 9.3.0-3ubuntu1 [8399 kB] Get:109 http://ftpmaster.internal/ubuntu focal/main amd64 libstdc++-9-dev amd64 9.3.0-3ubuntu1 [1689 kB] Get:110 http://ftpmaster.internal/ubuntu focal/main amd64 gcc-9 amd64 9.3.0-3ubuntu1 [8228 kB] Get:111 http://ftpmaster.internal/ubuntu focal/main amd64 libgcc-9-dev amd64 9.3.0-3ubuntu1 [2360 kB] Get:112 http://ftpmaster.internal/ubuntu focal/main amd64 cpp-9 amd64 9.3.0-3ubuntu1 [7490 kB] Get:113 http://ftpmaster.internal/ubuntu focal/main amd64 gcc-9-base amd64 9.3.0-3ubuntu1 [19.0 kB] Get:114 http://ftpmaster.internal/ubuntu focal/main amd64 libcom-err2 amd64 1.45.5-2ubuntu1 [9544 B] Get:115 http://ftpmaster.internal/ubuntu focal/main amd64 libprocps8 amd64 2:3.3.16-1ubuntu2 [33.1 kB] Get:116 http://ftpmaster.internal/ubuntu focal/main amd64 libss2 amd64 1.45.5-2ubuntu1 [11.3 kB] Get:117 http://ftpmaster.internal/ubuntu focal/main amd64 mawk amd64 1.3.4.20200120-2 [96.0 kB] Get:118 http://ftpmaster.internal/ubuntu focal/main amd64 procps amd64 2:3.3.16-1ubuntu2 [233 kB] Get:119 http://ftpmaster.internal/ubuntu focal/main amd64 sensible-utils all 0.0.12+nmu1 [15.0 kB] Get:120 http://ftpmaster.internal/ubuntu focal/main amd64 readline-common all 8.0-4 [53.5 kB] Get:121 http://ftpmaster.internal/ubuntu focal/main amd64 libreadline8 amd64 8.0-4 [131 kB] Get:122 http://ftpmaster.internal/ubuntu focal/main amd64 libsqlite3-0 amd64 3.31.1-3 [548 kB] Get:123 http://ftpmaster.internal/ubuntu focal/main amd64 openssl amd64 1.1.1d-2ubuntu6 [620 kB] Get:124 http://ftpmaster.internal/ubuntu focal/main amd64 tzdata all 2019c-3ubuntu1 [294 kB] Get:125 http://ftpmaster.internal/ubuntu focal/main amd64 libpng16-16 amd64 1.6.37-2 [179 kB] Get:126 http://ftpmaster.internal/ubuntu focal/main amd64 libassuan0 amd64 2.5.3-7ubuntu2 [35.7 kB] Get:127 http://ftpmaster.internal/ubuntu focal/main amd64 gpg amd64 2.2.19-3ubuntu2 [482 kB] Get:128 http://ftpmaster.internal/ubuntu focal/main amd64 gpgconf amd64 2.2.19-3ubuntu2 [124 kB] Get:129 http://ftpmaster.internal/ubuntu focal/main amd64 gpg-agent amd64 2.2.19-3ubuntu2 [232 kB] Get:130 http://ftpmaster.internal/ubuntu focal/main amd64 liblockfile-bin amd64 1.16-1.1 [11.7 kB] Get:131 http://ftpmaster.internal/ubuntu focal/main amd64 liblockfile1 amd64 1.16-1.1 [6680 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 70.0 MB in 2s (41.8 MB/s) Selecting previously unselected package gcc-10-base:amd64. (Reading database ... 12741 files and directories currently installed.) Preparing to unpack .../gcc-10-base_10-20200307-0ubuntu1_amd64.deb ... Unpacking gcc-10-base:amd64 (10-20200307-0ubuntu1) ... Setting up gcc-10-base:amd64 (10-20200307-0ubuntu1) ... Selecting previously unselected package libgcc-s1:amd64. (Reading database ... 12747 files and directories currently installed.) Preparing to unpack .../libgcc-s1_10-20200307-0ubuntu1_amd64.deb ... Unpacking libgcc-s1:amd64 (10-20200307-0ubuntu1) ... Replacing files in old package libgcc1:amd64 (1:9.2.1-9ubuntu2) ... Setting up libgcc-s1:amd64 (10-20200307-0ubuntu1) ... (Reading database ... 12749 files and directories currently installed.) Preparing to unpack .../0-libc6-dev_2.31-0ubuntu6_amd64.deb ... Unpacking libc6-dev:amd64 (2.31-0ubuntu6) over (2.30-0ubuntu2) ... Preparing to unpack .../1-libc-dev-bin_2.31-0ubuntu6_amd64.deb ... Unpacking libc-dev-bin (2.31-0ubuntu6) over (2.30-0ubuntu2) ... Selecting previously unselected package libcrypt-dev:amd64. Preparing to unpack .../2-libcrypt-dev_1%3a4.4.10-10ubuntu4_amd64.deb ... Unpacking libcrypt-dev:amd64 (1:4.4.10-10ubuntu4) ... Preparing to unpack .../3-linux-libc-dev_5.4.0-18.22_amd64.deb ... Unpacking linux-libc-dev:amd64 (5.4.0-18.22) over (5.3.0-18.19) ... Preparing to unpack .../4-libc6_2.31-0ubuntu6_amd64.deb ... Unpacking libc6:amd64 (2.31-0ubuntu6) over (2.30-0ubuntu2) ... Selecting previously unselected package libcrypt1:amd64. Preparing to unpack .../5-libcrypt1_1%3a4.4.10-10ubuntu4_amd64.deb ... Unpacking libcrypt1:amd64 (1:4.4.10-10ubuntu4) ... Setting up libcrypt1:amd64 (1:4.4.10-10ubuntu4) ... Setting up libc6:amd64 (2.31-0ubuntu6) ... (Reading database ... 12775 files and directories currently installed.) Preparing to unpack .../libc-bin_2.31-0ubuntu6_amd64.deb ... Unpacking libc-bin (2.31-0ubuntu6) over (2.30-0ubuntu2) ... Setting up libc-bin (2.31-0ubuntu6) ... 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Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent-extra.socket -> /usr/lib/systemd/user/gpg-agent-extra.socket. Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent-ssh.socket -> /usr/lib/systemd/user/gpg-agent-ssh.socket. Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent.socket -> /usr/lib/systemd/user/gpg-agent.socket. Setting up libstdc++-9-dev:amd64 (9.3.0-3ubuntu1) ... Setting up systemd (244.3-1ubuntu1) ... Installing new version of config file /etc/dhcp/dhclient-enter-hooks.d/resolved ... Installing new version of config file /etc/systemd/networkd.conf ... Installing new version of config file /etc/systemd/system.conf ... Installing new version of config file /etc/systemd/user.conf ... Initializing machine ID from KVM UUID. Setting up binutils (2.34-4ubuntu1) ... Setting up gcc-9 (9.3.0-3ubuntu1) ... Setting up systemd-sysv (244.3-1ubuntu1) ... Setting up g++-9 (9.3.0-3ubuntu1) ... Processing triggers for libc-bin (2.31-0ubuntu6) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-18851928 amd64 focal-proposed -c chroot:build-PACKAGEBUILD-18851928 --arch=amd64 --dist=focal-proposed --nolog -A kissplice_2.4.0-p1-5ubuntu1.dsc Initiating build PACKAGEBUILD-18851928 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-174-generic #204-Ubuntu SMP Wed Jan 29 06:41:01 UTC 2020 x86_64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lgw01-amd64-038.buildd +==============================================================================+ | kissplice 2.4.0-p1-5ubuntu1 (amd64) 18 Mar 2020 14:10 | +==============================================================================+ Package: kissplice Version: 2.4.0-p1-5ubuntu1 Source Version: 2.4.0-p1-5ubuntu1 Distribution: focal-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/kissplice-6qPmHp/kissplice-2.4.0-p1' with '<>' I: NOTICE: Log filtering will replace 'build/kissplice-6qPmHp' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-18851928/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- kissplice_2.4.0-p1-5ubuntu1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-4rZJjz/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-4rZJjz/apt_archive ./ InRelease Get:2 copy:/<>/resolver-4rZJjz/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-4rZJjz/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-4rZJjz/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-4rZJjz/apt_archive ./ Packages [528 B] Fetched 2861 B in 0s (260 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libffi6 libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-4rZJjz/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14756 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper-compat (= 12), dh-python, cmake, python-all-dev, zlib1g-dev Filtered Build-Depends: debhelper-compat (= 12), dh-python, cmake, python-all-dev, zlib1g-dev dpkg-deb: building package 'sbuild-build-depends-kissplice-dummy' in '/<>/resolver-hQnOJx/apt_archive/sbuild-build-depends-kissplice-dummy.deb'. Ign:1 copy:/<>/resolver-hQnOJx/apt_archive ./ InRelease Get:2 copy:/<>/resolver-hQnOJx/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-hQnOJx/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-hQnOJx/apt_archive ./ Sources [243 B] Get:5 copy:/<>/resolver-hQnOJx/apt_archive ./ Packages [562 B] Fetched 2924 B in 0s (251 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install kissplice build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libffi6 libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libasn1-8-heimdal libbrotli1 libbsd0 libcroco3 libcurl4 libdebhelper-perl libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libglib2.0-0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libicu66 libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libmagic-mgc libmagic1 libmpdec2 libnghttp2-14 libpipeline1 libpsl5 libpython-all-dev libpython2-dev libpython2-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.8-minimal libpython3.8-stdlib librhash0 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libsub-override-perl libtool libuchardet0 libuv1 libwind0-heimdal libxml2 m4 man-db mime-support po-debconf python-all python-all-dev python2 python2-dev python2-minimal python2.7 python2.7-dev python2.7-minimal python3 python3-distutils python3-lib2to3 python3-minimal python3.8 python3.8-minimal zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation cmake-doc ninja-build dh-make gettext-doc libasprintf-dev libgettextpo-dev groff lrzip krb5-doc krb5-user libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python2-doc python-tk python2.7-doc binfmt-support python3-doc python3-tk python3-venv python3.8-venv python3.8-doc Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libasn1-8-heimdal libbrotli1 libbsd0 libcroco3 libcurl4 libdebhelper-perl libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libglib2.0-0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libicu66 libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libmagic-mgc libmagic1 libmpdec2 libnghttp2-14 libpipeline1 libpsl5 libpython-all-dev libpython2-dev libpython2-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.8-minimal libpython3.8-stdlib librhash0 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libsub-override-perl libtool libuchardet0 libuv1 libwind0-heimdal libxml2 m4 man-db mime-support po-debconf python-all python-all-dev python2 python2-dev python2-minimal python2.7 python2.7-dev python2.7-minimal python3 python3-distutils python3-lib2to3 python3-minimal python3.8 python3.8-minimal sbuild-build-depends-kissplice-dummy zlib1g-dev 0 upgraded, 94 newly installed, 0 to remove and 0 not upgraded. Need to get 38.8 MB of archives. After this operation, 162 MB of additional disk space will be used. 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amd64 python2-minimal amd64 2.7.17-2ubuntu4 [27.5 kB] Get:21 http://ftpmaster.internal/ubuntu focal-proposed/universe amd64 libpython2.7-stdlib amd64 2.7.17-1ubuntu6 [1885 kB] Get:22 http://ftpmaster.internal/ubuntu focal-proposed/universe amd64 python2.7 amd64 2.7.17-1ubuntu6 [248 kB] Get:23 http://ftpmaster.internal/ubuntu focal-proposed/universe amd64 libpython2-stdlib amd64 2.7.17-2ubuntu4 [7072 B] Get:24 http://ftpmaster.internal/ubuntu focal-proposed/universe amd64 python2 amd64 2.7.17-2ubuntu4 [26.5 kB] Get:25 http://ftpmaster.internal/ubuntu focal/main amd64 libmagic-mgc amd64 1:5.38-4 [218 kB] Get:26 http://ftpmaster.internal/ubuntu focal/main amd64 libmagic1 amd64 1:5.38-4 [75.9 kB] Get:27 http://ftpmaster.internal/ubuntu focal/main amd64 file amd64 1:5.38-4 [23.3 kB] Get:28 http://ftpmaster.internal/ubuntu focal/main amd64 libelf1 amd64 0.176-1.1build1 [44.0 kB] Get:29 http://ftpmaster.internal/ubuntu focal/main amd64 libglib2.0-0 amd64 2.64.1-1 [1284 kB] Get:30 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[17.3 kB] Get:60 http://ftpmaster.internal/ubuntu focal/main amd64 libldap-2.4-2 amd64 2.4.49+dfsg-2ubuntu1 [156 kB] Get:61 http://ftpmaster.internal/ubuntu focal/main amd64 libnghttp2-14 amd64 1.40.0-1 [78.1 kB] Get:62 http://ftpmaster.internal/ubuntu focal/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2build1 [54.9 kB] Get:63 http://ftpmaster.internal/ubuntu focal/main amd64 libssh-4 amd64 0.9.3-2ubuntu1 [170 kB] Get:64 http://ftpmaster.internal/ubuntu focal/main amd64 libcurl4 amd64 7.68.0-1ubuntu1 [233 kB] Get:65 http://ftpmaster.internal/ubuntu focal/main amd64 libjsoncpp1 amd64 1.7.4-3.1ubuntu1 [75.6 kB] Get:66 http://ftpmaster.internal/ubuntu focal/main amd64 librhash0 amd64 1.3.9-1 [113 kB] Get:67 http://ftpmaster.internal/ubuntu focal/main amd64 libuv1 amd64 1.34.2-1ubuntu1 [80.4 kB] Get:68 http://ftpmaster.internal/ubuntu focal/main amd64 cmake amd64 3.16.3-1ubuntu1 [3669 kB] Get:69 http://ftpmaster.internal/ubuntu focal/main amd64 libtool all 2.4.6-13 [161 kB] Get:70 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http://ftpmaster.internal/ubuntu focal/main amd64 po-debconf all 1.0.21 [233 kB] Get:81 http://ftpmaster.internal/ubuntu focal/main amd64 debhelper all 12.9ubuntu1 [869 kB] Get:82 http://ftpmaster.internal/ubuntu focal/main amd64 python3-lib2to3 all 3.8.2-1ubuntu1 [74.1 kB] Get:83 http://ftpmaster.internal/ubuntu focal/main amd64 python3-distutils all 3.8.2-1ubuntu1 [140 kB] Get:84 http://ftpmaster.internal/ubuntu focal/universe amd64 dh-python all 4.20191017ubuntu7 [87.1 kB] Get:85 http://ftpmaster.internal/ubuntu focal/main amd64 libexpat1-dev amd64 2.2.9-1 [116 kB] Get:86 http://ftpmaster.internal/ubuntu focal-proposed/universe amd64 libpython2.7 amd64 2.7.17-1ubuntu6 [1036 kB] Get:87 http://ftpmaster.internal/ubuntu focal-proposed/universe amd64 libpython2.7-dev amd64 2.7.17-1ubuntu6 [2474 kB] Get:88 http://ftpmaster.internal/ubuntu focal-proposed/universe amd64 libpython2-dev amd64 2.7.17-2ubuntu4 [7140 B] Get:89 http://ftpmaster.internal/ubuntu focal-proposed/universe amd64 libpython-all-dev amd64 2.7.17-2ubuntu4 [1112 B] Get:90 http://ftpmaster.internal/ubuntu focal-proposed/universe amd64 python-all amd64 2.7.17-2ubuntu4 [1100 B] Get:91 http://ftpmaster.internal/ubuntu focal-proposed/universe amd64 python2.7-dev amd64 2.7.17-1ubuntu6 [287 kB] Get:92 http://ftpmaster.internal/ubuntu focal-proposed/universe amd64 python2-dev amd64 2.7.17-2ubuntu4 [1268 B] Get:93 http://ftpmaster.internal/ubuntu focal-proposed/universe amd64 python-all-dev amd64 2.7.17-2ubuntu4 [1116 B] Get:94 http://ftpmaster.internal/ubuntu focal/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2ubuntu1 [156 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 38.8 MB in 4s (8785 kB/s) Selecting previously unselected package libpython3.8-minimal:amd64. (Reading database ... 14756 files and directories currently installed.) Preparing to unpack .../libpython3.8-minimal_3.8.2-1ubuntu1_amd64.deb ... Unpacking libpython3.8-minimal:amd64 (3.8.2-1ubuntu1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.2.9-1_amd64.deb ... Unpacking libexpat1:amd64 (2.2.9-1) ... Selecting previously unselected package python3.8-minimal. Preparing to unpack .../python3.8-minimal_3.8.2-1ubuntu1_amd64.deb ... Unpacking python3.8-minimal (3.8.2-1ubuntu1) ... Setting up libpython3.8-minimal:amd64 (3.8.2-1ubuntu1) ... Setting up libexpat1:amd64 (2.2.9-1) ... Setting up python3.8-minimal (3.8.2-1ubuntu1) ... Selecting previously unselected package python3-minimal. (Reading database ... 15047 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.8.2-0ubuntu2_amd64.deb ... Unpacking python3-minimal (3.8.2-0ubuntu2) ... Selecting previously unselected package mime-support. 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Setting up libbsd0:amd64 (0.10.0-1) ... Setting up libelf1:amd64 (0.176-1.1build1) ... Setting up libxml2:amd64 (2.9.10+dfsg-4build1) ... Setting up libjsoncpp1:amd64 (1.7.4-3.1ubuntu1) ... Setting up libpython3-stdlib:amd64 (3.8.2-0ubuntu2) ... Setting up libheimbase1-heimdal:amd64 (7.7.0+dfsg-1) ... Setting up libfile-stripnondeterminism-perl (1.6.3-2) ... Setting up libpython2.7:amd64 (2.7.17-1ubuntu6) ... Setting up libpython2.7-dev:amd64 (2.7.17-1ubuntu6) ... Setting up python2.7 (2.7.17-1ubuntu6) ... Setting up libtool (2.4.6-13) ... Setting up libpython2-stdlib:amd64 (2.7.17-2ubuntu4) ... Setting up libarchive13:amd64 (3.4.0-1ubuntu2) ... Setting up libasn1-8-heimdal:amd64 (7.7.0+dfsg-1) ... Setting up m4 (1.4.18-4) ... Setting up python3 (3.8.2-0ubuntu2) ... Setting up libhcrypto4-heimdal:amd64 (7.7.0+dfsg-1) ... Setting up python2 (2.7.17-2ubuntu4) ... Setting up libwind0-heimdal:amd64 (7.7.0+dfsg-1) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:amd64 (1.17-6ubuntu4) ... Setting up libcroco3:amd64 (0.6.13-1) ... Setting up libssh-4:amd64 (0.9.3-2ubuntu1) ... Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.6.3-2) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-4) ... Setting up libpython2-dev:amd64 (2.7.17-2ubuntu4) ... Setting up python3-lib2to3 (3.8.2-1ubuntu1) ... Setting up python2.7-dev (2.7.17-1ubuntu6) ... Setting up automake (1:1.16.1-4ubuntu6) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up python3-distutils (3.8.2-1ubuntu1) ... Setting up dh-python (4.20191017ubuntu7) ... Setting up gettext (0.19.8.1-10) ... Setting up python2-dev (2.7.17-2ubuntu4) ... Setting up libpython-all-dev:amd64 (2.7.17-2ubuntu4) ... Setting up libhx509-5-heimdal:amd64 (7.7.0+dfsg-1) ... Setting up python-all (2.7.17-2ubuntu4) ... Setting up man-db (2.9.1-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up python-all-dev (2.7.17-2ubuntu4) ... Setting up libkrb5-26-heimdal:amd64 (7.7.0+dfsg-1) ... Setting up po-debconf (1.0.21) ... Setting up libheimntlm0-heimdal:amd64 (7.7.0+dfsg-1) ... Setting up libgssapi3-heimdal:amd64 (7.7.0+dfsg-1) ... Setting up libldap-2.4-2:amd64 (2.4.49+dfsg-2ubuntu1) ... Setting up libcurl4:amd64 (7.68.0-1ubuntu1) ... Setting up cmake (3.16.3-1ubuntu1) ... Setting up dh-autoreconf (19) ... Setting up debhelper (12.9ubuntu1) ... Setting up sbuild-build-depends-kissplice-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.31-0ubuntu6) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-174-generic amd64 (x86_64) Toolchain package versions: binutils_2.34-4ubuntu1 dpkg-dev_1.19.7ubuntu2 g++-9_9.3.0-3ubuntu1 gcc-9_9.3.0-3ubuntu1 libc6-dev_2.31-0ubuntu6 libstdc++-9-dev_9.3.0-3ubuntu1 libstdc++6_10-20200307-0ubuntu1 linux-libc-dev_5.4.0-18.22 Package versions: adduser_3.118ubuntu1 advancecomp_2.1-2.1 apt_2.0.0 autoconf_2.69-11.1 automake_1:1.16.1-4ubuntu6 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11ubuntu4 base-passwd_3.5.47 bash_5.0-6ubuntu1 binutils_2.34-4ubuntu1 binutils-common_2.34-4ubuntu1 binutils-x86-64-linux-gnu_2.34-4ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.34-0.1ubuntu8 build-essential_12.8ubuntu1 bzip2_1.0.8-2 ca-certificates_20190110 cmake_3.16.3-1ubuntu1 cmake-data_3.16.3-1ubuntu1 coreutils_8.30-3ubuntu2 cpp_4:9.2.1-3.1ubuntu1 cpp-9_9.3.0-3ubuntu1 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.9ubuntu1 debianutils_4.9.1 dh-autoreconf_19 dh-python_4.20191017ubuntu7 dh-strip-nondeterminism_1.6.3-2 diffutils_1:3.7-3 dpkg_1.19.7ubuntu2 dpkg-dev_1.19.7ubuntu2 dwz_0.13-5 e2fsprogs_1.45.5-2ubuntu1 fakeroot_1.24-1 fdisk_2.34-0.1ubuntu8 file_1:5.38-4 findutils_4.7.0-1ubuntu1 g++_4:9.2.1-3.1ubuntu1 g++-9_9.3.0-3ubuntu1 gcc_4:9.2.1-3.1ubuntu1 gcc-10-base_10-20200307-0ubuntu1 gcc-9_9.3.0-3ubuntu1 gcc-9-base_9.3.0-3ubuntu1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gpg_2.2.19-3ubuntu2 gpg-agent_2.2.19-3ubuntu2 gpgconf_2.2.19-3ubuntu2 gpgv_2.2.19-3ubuntu2 grep_3.4-1 groff-base_1.22.4-4 gzip_1.10-0ubuntu4 hostname_3.23 init_1.57 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-6 libapparmor1_2.13.3-7ubuntu2 libapt-pkg5.90_1.9.10 libapt-pkg6.0_2.0.0 libarchive-zip-perl_1.67-2 libarchive13_3.4.0-1ubuntu2 libargon2-1_0~20171227-0.2 libasan5_9.3.0-3ubuntu1 libasn1-8-heimdal_7.7.0+dfsg-1 libassuan0_2.5.3-7ubuntu2 libatomic1_10-20200307-0ubuntu1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2ubuntu6 libaudit1_1:2.8.5-2ubuntu6 libbinutils_2.34-4ubuntu1 libblkid1_2.34-0.1ubuntu8 libbrotli1_1.0.7-6build1 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.31-0ubuntu6 libc-dev-bin_2.31-0ubuntu6 libc6_2.31-0ubuntu6 libc6-dev_2.31-0ubuntu6 libcap-ng0_0.7.9-2.1build1 libcap2_1:2.32-1 libcc1-0_10-20200307-0ubuntu1 libcom-err2_1.45.5-2ubuntu1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.10-10ubuntu4 libcrypt1_1:4.4.10-10ubuntu4 libcryptsetup12_2:2.2.2-3ubuntu2 libctf-nobfd0_2.34-4ubuntu1 libctf0_2.34-4ubuntu1 libcurl4_7.68.0-1ubuntu1 libdb5.3_5.3.28+dfsg1-0.6ubuntu1 libdebconfclient0_0.251ubuntu1 libdebhelper-perl_12.9ubuntu1 libdevmapper1.02.1_2:1.02.167-1ubuntu1 libdpkg-perl_1.19.7ubuntu2 libelf1_0.176-1.1build1 libexpat1_2.2.9-1 libexpat1-dev_2.2.9-1 libext2fs2_1.45.5-2ubuntu1 libfakeroot_1.24-1 libfdisk1_2.34-0.1ubuntu8 libffi6_3.2.1-9 libffi7_3.3-3 libfile-stripnondeterminism-perl_1.6.3-2 libgcc-9-dev_9.3.0-3ubuntu1 libgcc-s1_10-20200307-0ubuntu1 libgcc1_1:10-20200307-0ubuntu1 libgcrypt20_1.8.5-5ubuntu1 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.64.1-1 libgmp10_2:6.2.0+dfsg-4 libgnutls30_3.6.11.1-2ubuntu2 libgomp1_10-20200307-0ubuntu1 libgpg-error0_1.37-1 libgssapi-krb5-2_1.17-6ubuntu4 libgssapi3-heimdal_7.7.0+dfsg-1 libhcrypto4-heimdal_7.7.0+dfsg-1 libheimbase1-heimdal_7.7.0+dfsg-1 libheimntlm0-heimdal_7.7.0+dfsg-1 libhogweed4_3.4.1-1 libhogweed5_3.5.1+really3.5.1-2 libhx509-5-heimdal_7.7.0+dfsg-1 libicu66_66.1-2ubuntu2 libidn2-0_2.2.0-2 libip4tc2_1.8.4-3ubuntu2 libisl21_0.21-2 libisl22_0.22.1-1 libitm1_10-20200307-0ubuntu1 libjson-c4_0.13.1+dfsg-7 libjsoncpp1_1.7.4-3.1ubuntu1 libk5crypto3_1.17-6ubuntu4 libkeyutils1_1.6-6ubuntu1 libkmod2_27-1ubuntu2 libkrb5-26-heimdal_7.7.0+dfsg-1 libkrb5-3_1.17-6ubuntu4 libkrb5support0_1.17-6ubuntu4 libldap-2.4-2_2.4.49+dfsg-2ubuntu1 libldap-common_2.4.49+dfsg-2ubuntu1 liblockfile-bin_1.16-1.1 liblockfile1_1.16-1.1 liblsan0_10-20200307-0ubuntu1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-4 libmagic1_1:5.38-4 libmount1_2.34-0.1ubuntu8 libmpc3_1.1.0-1 libmpdec2_2.4.2-3 libmpfr6_4.0.2-1 libncurses6_6.2-0ubuntu2 libncursesw6_6.2-0ubuntu2 libnettle6_3.4.1-1 libnettle7_3.5.1+really3.5.1-2 libnghttp2-14_1.40.0-1 libnpth0_1.6-1 libp11-kit0_0.23.20-1build1 libpam-modules_1.3.1-5ubuntu4 libpam-modules-bin_1.3.1-5ubuntu4 libpam-runtime_1.3.1-5ubuntu4 libpam0g_1.3.1-5ubuntu4 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12 libperl5.28_5.28.1-6build1 libperl5.30_5.30.0-9build1 libpipeline1_1.5.2-2build1 libpng16-16_1.6.37-2 libprocps7_2:3.3.15-2ubuntu3 libprocps8_2:3.3.16-1ubuntu2 libpsl5_0.20.2-2 libpython-all-dev_2.7.17-2ubuntu4 libpython2-dev_2.7.17-2ubuntu4 libpython2-stdlib_2.7.17-2ubuntu4 libpython2.7_2.7.17-1ubuntu6 libpython2.7-dev_2.7.17-1ubuntu6 libpython2.7-minimal_2.7.17-1ubuntu6 libpython2.7-stdlib_2.7.17-1ubuntu6 libpython3-stdlib_3.8.2-0ubuntu2 libpython3.8-minimal_3.8.2-1ubuntu1 libpython3.8-stdlib_3.8.2-1ubuntu1 libquadmath0_10-20200307-0ubuntu1 libreadline8_8.0-4 librhash0_1.3.9-1 libroken18-heimdal_7.7.0+dfsg-1 librtmp1_2.4+20151223.gitfa8646d.1-2build1 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.3-0ubuntu2 libselinux1_3.0-1build2 libsemanage-common_3.0-1build2 libsemanage1_3.0-1build2 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1ubuntu8 libsqlite3-0_3.31.1-3 libss2_1.45.5-2ubuntu1 libssh-4_0.9.3-2ubuntu1 libssl1.1_1.1.1d-2ubuntu6 libstdc++-9-dev_9.3.0-3ubuntu1 libstdc++6_10-20200307-0ubuntu1 libsub-override-perl_0.09-2 libsystemd0_244.3-1ubuntu1 libtasn1-6_4.16.0-2 libtinfo6_6.2-0ubuntu2 libtool_2.4.6-13 libtsan0_10-20200307-0ubuntu1 libubsan1_10-20200307-0ubuntu1 libuchardet0_0.0.6-3 libudev1_244.3-1ubuntu1 libunistring2_0.9.10-2 libuuid1_2.34-0.1ubuntu8 libuv1_1.34.2-1ubuntu1 libwind0-heimdal_7.7.0+dfsg-1 libxml2_2.9.10+dfsg-4build1 libzstd1_1.4.4+dfsg-3 linux-libc-dev_5.4.0-18.22 lockfile-progs_0.1.18 login_1:4.8.1-1ubuntu3 logsave_1.45.5-2ubuntu1 lsb-base_11.1.0ubuntu2 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.1-1 mawk_1.3.4.20200120-2 mime-support_3.64ubuntu1 mount_2.34-0.1ubuntu8 ncurses-base_6.2-0ubuntu2 ncurses-bin_6.2-0ubuntu2 openssl_1.1.1d-2ubuntu6 optipng_0.7.7-1 passwd_1:4.8.1-1ubuntu3 patch_2.7.6-6 perl_5.30.0-9build1 perl-base_5.30.0-9build1 perl-modules-5.28_5.28.1-6build1 perl-modules-5.30_5.30.0-9build1 pinentry-curses_1.1.0-3 pkgbinarymangler_144 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.16-1ubuntu2 python-all_2.7.17-2ubuntu4 python-all-dev_2.7.17-2ubuntu4 python2_2.7.17-2ubuntu4 python2-dev_2.7.17-2ubuntu4 python2-minimal_2.7.17-2ubuntu4 python2.7_2.7.17-1ubuntu6 python2.7-dev_2.7.17-1ubuntu6 python2.7-minimal_2.7.17-1ubuntu6 python3_3.8.2-0ubuntu2 python3-distutils_3.8.2-1ubuntu1 python3-lib2to3_3.8.2-1ubuntu1 python3-minimal_3.8.2-0ubuntu2 python3.8_3.8.2-1ubuntu1 python3.8-minimal_3.8.2-1ubuntu1 readline-common_8.0-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-kissplice-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 systemd_244.3-1ubuntu1 systemd-sysv_244.3-1ubuntu1 sysvinit-utils_2.96-2.1ubuntu1 tar_1.30+dfsg-6 tzdata_2019c-3ubuntu1 ubuntu-keyring_2020.02.11.1 util-linux_2.34-0.1ubuntu8 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2ubuntu1 zlib1g-dev_1:1.2.11.dfsg-2ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Wed Mar 18 14:08:32 2020 UTC gpgv: using RSA key D56571B88A8BBAF140BF63D6BD7EAA60778FA6F5 gpgv: issuer "doko@ubuntu.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./kissplice_2.4.0-p1-5ubuntu1.dsc dpkg-source: info: extracting kissplice in kissplice-2.4.0-p1 dpkg-source: info: unpacking kissplice_2.4.0-p1.orig.tar.gz dpkg-source: info: unpacking kissplice_2.4.0-p1-5ubuntu1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying python2.diff Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-18851928 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-18851928 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-18851928 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package kissplice dpkg-buildpackage: info: source version 2.4.0-p1-5ubuntu1 dpkg-buildpackage: info: source distribution focal dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --with python2 dh_clean debian/rules build dh build --with python2 dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- -DCMAKE_INSTALL_LIBEXECDIR=lib/ cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DCMAKE_INSTALL_LIBEXECDIR=lib/ .. -- The CXX compiler identification is GNU 9.3.0 -- The C compiler identification is GNU 9.3.0 -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.11") -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY -- Build files have been written to: /<>/obj-x86_64-linux-gnu make[1]: Leaving directory '/<>' dh_auto_build cd obj-x86_64-linux-gnu && make -j4 "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/CMakeFiles /<>/obj-x86_64-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/obj-x86_64-linux-gnu' make -f debruijn-v4/CMakeFiles/ks_debruijn4.dir/build.make debruijn-v4/CMakeFiles/ks_debruijn4.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/debruijn-v4 /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/debruijn-v4 /<>/obj-x86_64-linux-gnu/debruijn-v4/CMakeFiles/ks_debruijn4.dir/DependInfo.cmake --color= make -f thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/build.make thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/depend make -f thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/build.make thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/depend make -f modules/CMakeFiles/ks_clean_duplicates.dir/build.make modules/CMakeFiles/ks_clean_duplicates.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/thirdparty/kissreads/src /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/thirdparty/kissreads/src /<>/obj-x86_64-linux-gnu/thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/thirdparty/kissreads/src /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/thirdparty/kissreads/src /<>/obj-x86_64-linux-gnu/thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/DependInfo.cmake --color= Scanning dependencies of target ks_kissreadsSNPS make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/modules /<>/obj-x86_64-linux-gnu/modules/CMakeFiles/ks_clean_duplicates.dir/DependInfo.cmake --color= Scanning dependencies of target ks_debruijn4 make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/build.make thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f debruijn-v4/CMakeFiles/ks_debruijn4.dir/build.make debruijn-v4/CMakeFiles/ks_debruijn4.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' Scanning dependencies of target ks_clean_duplicates make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/CMakeFiles/ks_clean_duplicates.dir/build.make modules/CMakeFiles/ks_clean_duplicates.dir/build Scanning dependencies of target ks_kissreadsSplice make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/build.make thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 2%] Building CXX object debruijn-v4/CMakeFiles/ks_debruijn4.dir/main.cpp.o [ 2%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/commons.c.o cd /<>/obj-x86_64-linux-gnu/debruijn-v4 && /usr/bin/c++ -Dkmer_type=__uint128_t -I/<>/debruijn-v4 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ks_debruijn4.dir/main.cpp.o -c /<>/debruijn-v4/main.cpp cd /<>/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/<>/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DCLASSICAL_SPANNING -o CMakeFiles/ks_kissreadsSNPS.dir/commons.c.o -c /<>/thirdparty/kissreads/src/commons.c [ 3%] Building CXX object modules/CMakeFiles/ks_clean_duplicates.dir/CleanDuplicates.cpp.o cd /<>/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/<>/modules -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ks_clean_duplicates.dir/CleanDuplicates.cpp.o -c /<>/modules/CleanDuplicates.cpp [ 5%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/commons.c.o cd /<>/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/<>/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -o CMakeFiles/ks_kissreadsSplice.dir/commons.c.o -c /<>/thirdparty/kissreads/src/commons.c [ 6%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/extension_algorithm.c.o cd /<>/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/<>/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DCLASSICAL_SPANNING -o CMakeFiles/ks_kissreadsSNPS.dir/extension_algorithm.c.o -c /<>/thirdparty/kissreads/src/extension_algorithm.c [ 7%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/extension_algorithm.c.o cd /<>/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/<>/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -o CMakeFiles/ks_kissreadsSplice.dir/extension_algorithm.c.o -c /<>/thirdparty/kissreads/src/extension_algorithm.c [ 8%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/interface_libchash.c.o cd /<>/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/<>/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DCLASSICAL_SPANNING -o CMakeFiles/ks_kissreadsSNPS.dir/interface_libchash.c.o -c /<>/thirdparty/kissreads/src/interface_libchash.c [ 10%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/interface_libchash.c.o cd /<>/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/<>/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -o CMakeFiles/ks_kissreadsSplice.dir/interface_libchash.c.o -c /<>/thirdparty/kissreads/src/interface_libchash.c [ 11%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/libchash.c.o cd /<>/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/<>/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DCLASSICAL_SPANNING -o CMakeFiles/ks_kissreadsSNPS.dir/libchash.c.o -c /<>/thirdparty/kissreads/src/libchash.c /<>/thirdparty/kissreads/src/libchash.c: In function ‘HashFind’: /<>/thirdparty/kissreads/src/libchash.c:193:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/thirdparty/kissreads/src/libchash.c:220:7: note: in expansion of macro ‘READ_UL’ 220 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ /<>/thirdparty/kissreads/src/libchash.c:1221:4: note: in expansion of macro ‘LOAD_AND_RETURN’ 1221 | LOAD_AND_RETURN(ht, Find(ht, KEY_TRUNC(ht, key), NULL)); | ^~~~~~~~~~~~~~~ /<>/thirdparty/kissreads/src/libchash.c: In function ‘HashFindLast’: /<>/thirdparty/kissreads/src/libchash.c:193:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/thirdparty/kissreads/src/libchash.c:220:7: note: in expansion of macro ‘READ_UL’ 220 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ /<>/thirdparty/kissreads/src/libchash.c:1226:4: note: in expansion of macro ‘LOAD_AND_RETURN’ 1226 | LOAD_AND_RETURN(ht, ht->posLastFind); | ^~~~~~~~~~~~~~~ /<>/thirdparty/kissreads/src/libchash.c: In function ‘HashFirstBucket’: /<>/thirdparty/kissreads/src/libchash.c:193:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/thirdparty/kissreads/src/libchash.c:220:7: note: in expansion of macro ‘READ_UL’ 220 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ /<>/thirdparty/kissreads/src/libchash.c:1290:3: note: in expansion of macro ‘LOAD_AND_RETURN’ 1290 | LOAD_AND_RETURN(ht, retval); | ^~~~~~~~~~~~~~~ /<>/thirdparty/kissreads/src/libchash.c: In function ‘HashNextBucket’: /<>/thirdparty/kissreads/src/libchash.c:193:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/thirdparty/kissreads/src/libchash.c:220:7: note: in expansion of macro ‘READ_UL’ 220 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ /<>/thirdparty/kissreads/src/libchash.c:1300:3: note: in expansion of macro ‘LOAD_AND_RETURN’ 1300 | LOAD_AND_RETURN(ht, retval); | ^~~~~~~~~~~~~~~ /<>/thirdparty/kissreads/src/libchash.c: In function ‘HashDoLoad’: /<>/thirdparty/kissreads/src/libchash.c:1407:4: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] 1407 | fread(szMagicKey, 1, 4, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/thirdparty/kissreads/src/libchash.c:193:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/thirdparty/kissreads/src/libchash.c:1416:4: note: in expansion of macro ‘READ_UL’ 1416 | READ_UL(fp, ht->cchKey); | ^~~~~~~ /<>/thirdparty/kissreads/src/libchash.c:193:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/thirdparty/kissreads/src/libchash.c:1417:4: note: in expansion of macro ‘READ_UL’ 1417 | READ_UL(fp, ht->cItems); | ^~~~~~~ /<>/thirdparty/kissreads/src/libchash.c:193:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/thirdparty/kissreads/src/libchash.c:1418:4: note: in expansion of macro ‘READ_UL’ 1418 | READ_UL(fp, ht->cDeletedItems); | ^~~~~~~ /<>/thirdparty/kissreads/src/libchash.c:193:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/thirdparty/kissreads/src/libchash.c:1421:4: note: in expansion of macro ‘READ_UL’ 1421 | READ_UL(fp, cchKey); | ^~~~~~~ /<>/thirdparty/kissreads/src/libchash.c:1423:4: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] 1423 | fread(rgchKeys, 1, cchKey, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/thirdparty/kissreads/src/libchash.c:193:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/thirdparty/kissreads/src/libchash.c:1428:7: note: in expansion of macro ‘READ_UL’ 1428 | READ_UL(fp, bck->data); /* all we need if dataRead is NULL */ | ^~~~~~~ /<>/thirdparty/kissreads/src/libchash.c: In function ‘SparseRead’: /<>/thirdparty/kissreads/src/libchash.c:193:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/thirdparty/kissreads/src/libchash.c:622:4: note: in expansion of macro ‘READ_UL’ 622 | READ_UL(fp, cBuckets); /* actually, cBuckets is stored */ | ^~~~~~~ /<>/thirdparty/kissreads/src/libchash.c:193:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/thirdparty/kissreads/src/libchash.c:627:3: note: in expansion of macro ‘READ_UL’ 627 | READ_UL(fp, (*pbinSparse)[i].bmOccupied[j]); | ^~~~~~~ [ 12%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/libchash.c.o cd /<>/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/<>/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -o CMakeFiles/ks_kissreadsSplice.dir/libchash.c.o -c /<>/thirdparty/kissreads/src/libchash.c /<>/thirdparty/kissreads/src/libchash.c: In function ‘HashFind’: /<>/thirdparty/kissreads/src/libchash.c:193:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/thirdparty/kissreads/src/libchash.c:220:7: note: in expansion of macro ‘READ_UL’ 220 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ /<>/thirdparty/kissreads/src/libchash.c:1221:4: note: in expansion of macro ‘LOAD_AND_RETURN’ 1221 | LOAD_AND_RETURN(ht, Find(ht, KEY_TRUNC(ht, key), NULL)); | ^~~~~~~~~~~~~~~ /<>/thirdparty/kissreads/src/libchash.c: In function ‘HashFindLast’: /<>/thirdparty/kissreads/src/libchash.c:193:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/thirdparty/kissreads/src/libchash.c:220:7: note: in expansion of macro ‘READ_UL’ 220 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ /<>/thirdparty/kissreads/src/libchash.c:1226:4: note: in expansion of macro ‘LOAD_AND_RETURN’ 1226 | LOAD_AND_RETURN(ht, ht->posLastFind); | ^~~~~~~~~~~~~~~ /<>/thirdparty/kissreads/src/libchash.c: In function ‘HashFirstBucket’: /<>/thirdparty/kissreads/src/libchash.c:193:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/thirdparty/kissreads/src/libchash.c:220:7: note: in expansion of macro ‘READ_UL’ 220 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ /<>/thirdparty/kissreads/src/libchash.c:1290:3: note: in expansion of macro ‘LOAD_AND_RETURN’ 1290 | LOAD_AND_RETURN(ht, retval); | ^~~~~~~~~~~~~~~ /<>/thirdparty/kissreads/src/libchash.c: In function ‘HashNextBucket’: /<>/thirdparty/kissreads/src/libchash.c:193:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/thirdparty/kissreads/src/libchash.c:220:7: note: in expansion of macro ‘READ_UL’ 220 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ /<>/thirdparty/kissreads/src/libchash.c:1300:3: note: in expansion of macro ‘LOAD_AND_RETURN’ 1300 | LOAD_AND_RETURN(ht, retval); | ^~~~~~~~~~~~~~~ /<>/thirdparty/kissreads/src/libchash.c: In function ‘HashDoLoad’: /<>/thirdparty/kissreads/src/libchash.c:1407:4: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] 1407 | fread(szMagicKey, 1, 4, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/thirdparty/kissreads/src/libchash.c:193:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/thirdparty/kissreads/src/libchash.c:1416:4: note: in expansion of macro ‘READ_UL’ 1416 | READ_UL(fp, ht->cchKey); | ^~~~~~~ /<>/thirdparty/kissreads/src/libchash.c:193:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/thirdparty/kissreads/src/libchash.c:1417:4: note: in expansion of macro ‘READ_UL’ 1417 | READ_UL(fp, ht->cItems); | ^~~~~~~ /<>/thirdparty/kissreads/src/libchash.c:193:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/thirdparty/kissreads/src/libchash.c:1418:4: note: in expansion of macro ‘READ_UL’ 1418 | READ_UL(fp, ht->cDeletedItems); | ^~~~~~~ /<>/thirdparty/kissreads/src/libchash.c:193:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/thirdparty/kissreads/src/libchash.c:1421:4: note: in expansion of macro ‘READ_UL’ 1421 | READ_UL(fp, cchKey); | ^~~~~~~ /<>/thirdparty/kissreads/src/libchash.c:1423:4: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] 1423 | fread(rgchKeys, 1, cchKey, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/thirdparty/kissreads/src/libchash.c:193:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/thirdparty/kissreads/src/libchash.c:1428:7: note: in expansion of macro ‘READ_UL’ 1428 | READ_UL(fp, bck->data); /* all we need if dataRead is NULL */ | ^~~~~~~ /<>/thirdparty/kissreads/src/libchash.c: In function ‘SparseRead’: /<>/thirdparty/kissreads/src/libchash.c:193:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/thirdparty/kissreads/src/libchash.c:622:4: note: in expansion of macro ‘READ_UL’ 622 | READ_UL(fp, cBuckets); /* actually, cBuckets is stored */ | ^~~~~~~ /<>/thirdparty/kissreads/src/libchash.c:193:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/thirdparty/kissreads/src/libchash.c:627:3: note: in expansion of macro ‘READ_UL’ 627 | READ_UL(fp, (*pbinSparse)[i].bmOccupied[j]); | ^~~~~~~ /<>/debruijn-v4/main.cpp: In function ‘void construct_linear_seqs()’: /<>/debruijn-v4/main.cpp:105:96: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘int64_t’ {aka ‘long int’} [-Wformat=] 105 | if ((NbBranchingKmer%300)==0) fprintf (stderr,"%cLooping through branching kmer n° %lld / %lld ",13,NbBranchingKmer,terminator->nb_branching_kmers); | ~~~^ ~~~~~~~~~~~~~~~ | | | | long long int int64_t {aka long int} | %ld /<>/debruijn-v4/main.cpp:105:103: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 5 has type ‘int64_t’ {aka ‘long int’} [-Wformat=] 105 | if ((NbBranchingKmer%300)==0) fprintf (stderr,"%cLooping through branching kmer n° %lld / %lld ",13,NbBranchingKmer,terminator->nb_branching_kmers); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int int64_t {aka long int} | %ld /<>/debruijn-v4/main.cpp: In function ‘int main(int, char**)’: /<>/debruijn-v4/main.cpp:177:64: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘long unsigned int’ [-Wformat=] 177 | printf("Max kmer size on this compiled version is %d\n",sizeof(kmer_type)*4-2); | ~^ ~~~~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld /<>/debruijn-v4/main.cpp:206:59: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 206 | printf("estimated values: nbits Bloom %i, nb FP %lld, max memory %i MB\n",estimated_bloom_size,estimated_nb_FP,max_memory); | ~~~^ ~~~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld [ 13%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/outputs.c.o cd /<>/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/<>/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DCLASSICAL_SPANNING -o CMakeFiles/ks_kissreadsSNPS.dir/outputs.c.o -c /<>/thirdparty/kissreads/src/outputs.c [ 15%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/outputs.c.o cd /<>/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/<>/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -o CMakeFiles/ks_kissreadsSplice.dir/outputs.c.o -c /<>/thirdparty/kissreads/src/outputs.c [ 16%] Building CXX object debruijn-v4/CMakeFiles/ks_debruijn4.dir/minia/Pool.cpp.o cd /<>/obj-x86_64-linux-gnu/debruijn-v4 && /usr/bin/c++ -Dkmer_type=__uint128_t -I/<>/debruijn-v4 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ks_debruijn4.dir/minia/Pool.cpp.o -c /<>/debruijn-v4/minia/Pool.cpp [ 17%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/coherent_algorithm.c.o cd /<>/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/<>/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DCLASSICAL_SPANNING -o CMakeFiles/ks_kissreadsSNPS.dir/coherent_algorithm.c.o -c /<>/thirdparty/kissreads/src/coherent_algorithm.c [ 18%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/couple.c.o cd /<>/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/<>/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DCLASSICAL_SPANNING -o CMakeFiles/ks_kissreadsSNPS.dir/couple.c.o -c /<>/thirdparty/kissreads/src/couple.c [ 20%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/coherent_algorithm.c.o cd /<>/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/<>/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -o CMakeFiles/ks_kissreadsSplice.dir/coherent_algorithm.c.o -c /<>/thirdparty/kissreads/src/coherent_algorithm.c [ 21%] Building CXX object debruijn-v4/CMakeFiles/ks_debruijn4.dir/minia/Bank.cpp.o cd /<>/obj-x86_64-linux-gnu/debruijn-v4 && /usr/bin/c++ -Dkmer_type=__uint128_t -I/<>/debruijn-v4 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ks_debruijn4.dir/minia/Bank.cpp.o -c /<>/debruijn-v4/minia/Bank.cpp [ 22%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/fragment_index.c.o cd /<>/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/<>/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DCLASSICAL_SPANNING -o CMakeFiles/ks_kissreadsSNPS.dir/fragment_index.c.o -c /<>/thirdparty/kissreads/src/fragment_index.c [ 24%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/couple.c.o cd /<>/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/<>/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -o CMakeFiles/ks_kissreadsSplice.dir/couple.c.o -c /<>/thirdparty/kissreads/src/couple.c [ 25%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/fragment_index.c.o cd /<>/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/<>/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -o CMakeFiles/ks_kissreadsSplice.dir/fragment_index.c.o -c /<>/thirdparty/kissreads/src/fragment_index.c [ 26%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/kissReads.c.o cd /<>/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/<>/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DCLASSICAL_SPANNING -o CMakeFiles/ks_kissreadsSNPS.dir/kissReads.c.o -c /<>/thirdparty/kissreads/src/kissReads.c [ 27%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/kissReads.c.o cd /<>/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/<>/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -o CMakeFiles/ks_kissreadsSplice.dir/kissReads.c.o -c /<>/thirdparty/kissreads/src/kissReads.c /<>/debruijn-v4/minia/Bank.cpp: In member function ‘void Bank::init(char**, int)’: /<>/debruijn-v4/minia/Bank.cpp:279:19: warning: ignoring return value of ‘char* strerror_r(int, char*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] 279 | strerror_r( errno, buffer, BUFSIZ ); // get string message from errno | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/debruijn-v4/minia/Bank.cpp: In member function ‘void BinaryBank::open(bool)’: /<>/debruijn-v4/minia/Bank.cpp:710:19: warning: ignoring return value of ‘char* strerror_r(int, char*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] 710 | strerror_r( errno, buffer, BUFSIZ ); // get string message from errno | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/debruijn-v4/minia/Bank.cpp: In member function ‘void BinaryReads::open(bool)’: /<>/debruijn-v4/minia/Bank.cpp:795:19: warning: ignoring return value of ‘char* strerror_r(int, char*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] 795 | strerror_r( errno, buffer, BUFSIZ ); // get string message from errno | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/debruijn-v4/minia/Bank.cpp: In member function ‘int KmersBuffer::readkmers()’: /<>/debruijn-v4/minia/Bank.cpp:985:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 985 | fread(buffer,sizeof( char),block_size, binary_read_file); // read a block of sequences into the buffer | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 29%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/list.c.o cd /<>/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/<>/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DCLASSICAL_SPANNING -o CMakeFiles/ks_kissreadsSNPS.dir/list.c.o -c /<>/thirdparty/kissreads/src/list.c [ 30%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/tree.c.o cd /<>/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/<>/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DCLASSICAL_SPANNING -o CMakeFiles/ks_kissreadsSNPS.dir/tree.c.o -c /<>/thirdparty/kissreads/src/tree.c [ 31%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/list.c.o cd /<>/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/<>/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -o CMakeFiles/ks_kissreadsSplice.dir/list.c.o -c /<>/thirdparty/kissreads/src/list.c [ 32%] Linking C executable ../../../lib/kissplice/ks_kissreadsSNPS cd /<>/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ks_kissreadsSNPS.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ks_kissreadsSNPS.dir/commons.c.o CMakeFiles/ks_kissreadsSNPS.dir/extension_algorithm.c.o CMakeFiles/ks_kissreadsSNPS.dir/interface_libchash.c.o CMakeFiles/ks_kissreadsSNPS.dir/libchash.c.o CMakeFiles/ks_kissreadsSNPS.dir/outputs.c.o CMakeFiles/ks_kissreadsSNPS.dir/coherent_algorithm.c.o CMakeFiles/ks_kissreadsSNPS.dir/couple.c.o CMakeFiles/ks_kissreadsSNPS.dir/fragment_index.c.o CMakeFiles/ks_kissreadsSNPS.dir/kissReads.c.o CMakeFiles/ks_kissreadsSNPS.dir/list.c.o CMakeFiles/ks_kissreadsSNPS.dir/tree.c.o -o ../../../lib/kissplice/ks_kissreadsSNPS -lm -lz [ 34%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/tree.c.o cd /<>/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/<>/thirdparty/kissreads/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -o CMakeFiles/ks_kissreadsSplice.dir/tree.c.o -c /<>/thirdparty/kissreads/src/tree.c make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 34%] Built target ks_kissreadsSNPS make -f modules/CMakeFiles/ks_bubble_enumeration.dir/build.make modules/CMakeFiles/ks_bubble_enumeration.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/modules /<>/obj-x86_64-linux-gnu/modules/CMakeFiles/ks_bubble_enumeration.dir/DependInfo.cmake --color= Scanning dependencies of target ks_bubble_enumeration make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/CMakeFiles/ks_bubble_enumeration.dir/build.make modules/CMakeFiles/ks_bubble_enumeration.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 35%] Building CXX object modules/CMakeFiles/ks_bubble_enumeration.dir/BubbleEnumeration.cpp.o cd /<>/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/<>/modules -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ks_bubble_enumeration.dir/BubbleEnumeration.cpp.o -c /<>/modules/BubbleEnumeration.cpp [ 36%] Linking C executable ../../../lib/kissplice/ks_kissreadsSplice cd /<>/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ks_kissreadsSplice.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ks_kissreadsSplice.dir/commons.c.o CMakeFiles/ks_kissreadsSplice.dir/extension_algorithm.c.o CMakeFiles/ks_kissreadsSplice.dir/interface_libchash.c.o CMakeFiles/ks_kissreadsSplice.dir/libchash.c.o CMakeFiles/ks_kissreadsSplice.dir/outputs.c.o CMakeFiles/ks_kissreadsSplice.dir/coherent_algorithm.c.o CMakeFiles/ks_kissreadsSplice.dir/couple.c.o CMakeFiles/ks_kissreadsSplice.dir/fragment_index.c.o CMakeFiles/ks_kissreadsSplice.dir/kissReads.c.o CMakeFiles/ks_kissreadsSplice.dir/list.c.o CMakeFiles/ks_kissreadsSplice.dir/tree.c.o -o ../../../lib/kissplice/ks_kissreadsSplice -lm -lz make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 36%] Built target ks_kissreadsSplice make -f modules/CMakeFiles/ks_run_modules.dir/build.make modules/CMakeFiles/ks_run_modules.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/modules /<>/obj-x86_64-linux-gnu/modules/CMakeFiles/ks_run_modules.dir/DependInfo.cmake --color= Scanning dependencies of target ks_run_modules make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/CMakeFiles/ks_run_modules.dir/build.make modules/CMakeFiles/ks_run_modules.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 37%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/run.cpp.o cd /<>/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/<>/modules -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ks_run_modules.dir/run.cpp.o -c /<>/modules/run.cpp [ 39%] Building CXX object debruijn-v4/CMakeFiles/ks_debruijn4.dir/minia/Bloom.cpp.o cd /<>/obj-x86_64-linux-gnu/debruijn-v4 && /usr/bin/c++ -Dkmer_type=__uint128_t -I/<>/debruijn-v4 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ks_debruijn4.dir/minia/Bloom.cpp.o -c /<>/debruijn-v4/minia/Bloom.cpp [ 40%] Building CXX object modules/CMakeFiles/ks_clean_duplicates.dir/CycleCompression.cpp.o cd /<>/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/<>/modules -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ks_clean_duplicates.dir/CycleCompression.cpp.o -c /<>/modules/CycleCompression.cpp /<>/debruijn-v4/minia/Bloom.cpp: In member function ‘void Bloom::load(char*)’: /<>/debruijn-v4/minia/Bloom.cpp:256:51: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 256 | printf("loading bloom filter from file, nelem %lli \n",nchar); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li In file included from /<>/modules/BubbleEnumeration.cpp:61: /<>/modules/BubbleEnumeration.h:124:1: warning: ‘typedef’ was ignored in this declaration 124 | typedef struct Path { | ^~~~~~~ /<>/debruijn-v4/minia/Bloom.cpp:257:7: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 257 | fread(blooma, sizeof(unsigned char), nchar, file_data); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 41%] Building CXX object debruijn-v4/CMakeFiles/ks_debruijn4.dir/minia/Hash16.cpp.o cd /<>/obj-x86_64-linux-gnu/debruijn-v4 && /usr/bin/c++ -Dkmer_type=__uint128_t -I/<>/debruijn-v4 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ks_debruijn4.dir/minia/Hash16.cpp.o -c /<>/debruijn-v4/minia/Hash16.cpp [ 43%] Building CXX object modules/CMakeFiles/ks_clean_duplicates.dir/NGraph.cpp.o cd /<>/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/<>/modules -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ks_clean_duplicates.dir/NGraph.cpp.o -c /<>/modules/NGraph.cpp In file included from /<>/modules/BubbleEnumeration.cpp:61: /<>/modules/BubbleEnumeration.h: In function ‘bool read_edges_and_nodes_withoptimIO(char*, char*, char*, char*, char*, int*, TEdgeFunctor, TNodeFunctor&) [with TEdgeFunctor = EdgeLoader; TNodeFunctor = NodeLoader]’: /<>/modules/BubbleEnumeration.h:84:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] 84 | fscanf(info_file, "%d \n",&bcc_size ); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/modules/BubbleEnumeration.h:85:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] 85 | fscanf(info_file, "%d \n",&records_per_file ); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/modules/BubbleEnumeration.cpp:60: /<>/modules/CGraph.h: In function ‘bool read_node_noncontigous_file_withoptimIO(FILE*, FILE*, int*, int*, TFunctor&) [with TFunctor = NodeLoader]’: /<>/modules/CGraph.h:252:68: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 252 | for (int i = 0; i < *required_sequence+*file_index-2 ; i++) fgets(buffer, 100 * MAX, contents_file_node); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/modules/CGraph.h:253:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] 253 | fscanf(contents_file_node, "%d \n",&written_lines_before ); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/modules/CGraph.h:254:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] 254 | fscanf(contents_file_node, "%d \n",&written_lines_for_record ); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/modules/CGraph.h:265:58: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 265 | for (int i = 0; i < written_lines_before ; i++) fgets(buffer, 100 * MAX, node_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/modules/CGraph.h: In member function ‘void NodeLoader::operator()(FILE*, int)’: /<>/modules/CGraph.h:215:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 215 | fgets(buffer, 100 * MAX, node_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/modules/CGraph.h: In function ‘void read_edge_file_withoptimIO(FILE*, FILE*, int*, int*, TFunctor&) [with TFunctor = EdgeLoader]’: /<>/modules/CGraph.h:330:68: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 330 | for (int i = 0; i < *required_sequence+*file_index-2 ; i++) fgets(buffer, 100 * MAX, contents_file_edge); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/modules/CGraph.h:331:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] 331 | fscanf(contents_file_edge, "%d \n",&written_lines_before ); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/modules/CGraph.h:332:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] 332 | fscanf(contents_file_edge, "%d \n",&written_lines_for_record ); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/modules/CGraph.h:339:56: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 339 | for (int i = 0; i < written_lines_before ; i++) fgets(buffer, 100 * MAX, edge_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/modules/CGraph.h: In member function ‘void EdgeLoader::operator()(FILE*, int)’: /<>/modules/CGraph.h:294:7: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 294 | fgets(buffer, 100 * MAX, edge_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 44%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/CycleCompression.cpp.o cd /<>/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/<>/modules -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ks_run_modules.dir/CycleCompression.cpp.o -c /<>/modules/CycleCompression.cpp [ 45%] Building CXX object debruijn-v4/CMakeFiles/ks_debruijn4.dir/minia/Kmer.cpp.o cd /<>/obj-x86_64-linux-gnu/debruijn-v4 && /usr/bin/c++ -Dkmer_type=__uint128_t -I/<>/debruijn-v4 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ks_debruijn4.dir/minia/Kmer.cpp.o -c /<>/debruijn-v4/minia/Kmer.cpp [ 46%] Building CXX object debruijn-v4/CMakeFiles/ks_debruijn4.dir/minia/Set.cpp.o cd /<>/obj-x86_64-linux-gnu/debruijn-v4 && /usr/bin/c++ -Dkmer_type=__uint128_t -I/<>/debruijn-v4 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ks_debruijn4.dir/minia/Set.cpp.o -c /<>/debruijn-v4/minia/Set.cpp [ 48%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/NGraph.cpp.o cd /<>/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/<>/modules -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ks_run_modules.dir/NGraph.cpp.o -c /<>/modules/NGraph.cpp /<>/modules/NGraph.cpp: In function ‘void read_graph_edges_new(NGraph&, FILE*, FILE*, FILE*, int*, int*)’: /<>/modules/NGraph.cpp:1050:68: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 1050 | for (int i = 0; i < *required_sequence+*file_index-2 ; i++) fgets(buffer, 100 * MAX, contents_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/modules/NGraph.cpp:1051:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] 1051 | fscanf(contents_file, "%d \n",&written_lines_before ); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/modules/NGraph.cpp:1052:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] 1052 | fscanf(contents_file, "%d \n",&written_lines_for_record ); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/modules/NGraph.cpp:1061:56: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 1061 | for (int i = 0; i < written_lines_before ; i++) fgets(buffer, 100 * MAX, data_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/modules/NGraph.cpp:1065:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 1065 | fgets(buffer, 100 * MAX, data_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/modules/NGraph.cpp: In function ‘void read_graph_nodes_new(NGraph&, FILE*, FILE*, FILE*, int*, int*)’: /<>/modules/NGraph.cpp:1097:68: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 1097 | for (int i = 0; i < *required_sequence+*file_index-2 ; i++) fgets(buffer, 100 * MAX, contents_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/modules/NGraph.cpp:1098:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] 1098 | fscanf(contents_file, "%d \n",&written_lines_before ); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/modules/NGraph.cpp:1099:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] 1099 | fscanf(contents_file, "%d \n",&written_lines_for_record ); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/modules/NGraph.cpp:1108:58: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 1108 | for (int i = 0; i < written_lines_before ; i++) { fgets(buffer, 100 * MAX, data_file); } | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/modules/NGraph.cpp:1112:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 1112 | fgets(buffer, 100 * MAX, data_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/debruijn-v4/minia/Set.cpp: In member function ‘void AssocPairedSet::load(char*)’: /<>/debruijn-v4/minia/Set.cpp:290:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 290 | fread(&liste_value[0], sizeof(pair_nt_kmer_t), liste_value.size(), file_data); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 49%] Building CXX object debruijn-v4/CMakeFiles/ks_debruijn4.dir/minia/Utils.cpp.o cd /<>/obj-x86_64-linux-gnu/debruijn-v4 && /usr/bin/c++ -Dkmer_type=__uint128_t -I/<>/debruijn-v4 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ks_debruijn4.dir/minia/Utils.cpp.o -c /<>/debruijn-v4/minia/Utils.cpp /<>/modules/NGraph.cpp: In function ‘void read_graph_edges_new(NGraph&, FILE*, FILE*, FILE*, int*, int*)’: /<>/modules/NGraph.cpp:1050:68: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 1050 | for (int i = 0; i < *required_sequence+*file_index-2 ; i++) fgets(buffer, 100 * MAX, contents_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/modules/NGraph.cpp:1051:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] 1051 | fscanf(contents_file, "%d \n",&written_lines_before ); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/modules/NGraph.cpp:1052:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] 1052 | fscanf(contents_file, "%d \n",&written_lines_for_record ); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/modules/NGraph.cpp:1061:56: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 1061 | for (int i = 0; i < written_lines_before ; i++) fgets(buffer, 100 * MAX, data_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/modules/NGraph.cpp:1065:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 1065 | fgets(buffer, 100 * MAX, data_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/modules/NGraph.cpp: In function ‘void read_graph_nodes_new(NGraph&, FILE*, FILE*, FILE*, int*, int*)’: /<>/modules/NGraph.cpp:1097:68: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 1097 | for (int i = 0; i < *required_sequence+*file_index-2 ; i++) fgets(buffer, 100 * MAX, contents_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/modules/NGraph.cpp:1098:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] 1098 | fscanf(contents_file, "%d \n",&written_lines_before ); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/modules/NGraph.cpp:1099:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] 1099 | fscanf(contents_file, "%d \n",&written_lines_for_record ); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/modules/NGraph.cpp:1108:58: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 1108 | for (int i = 0; i < written_lines_before ; i++) { fgets(buffer, 100 * MAX, data_file); } | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/modules/NGraph.cpp:1112:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 1112 | fgets(buffer, 100 * MAX, data_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/debruijn-v4/minia/Utils.cpp: In function ‘uint64_t extrapolate_distinct_kmers_wrapped(long unsigned int, Bank*)’: /<>/debruijn-v4/minia/Utils.cpp:434:100: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘int64_t’ {aka ‘long int’} [-Wformat=] 434 | if ((NbRead%10000)==0) fprintf (stderr,(char*)"%cExtrapolating number of distinct kmers %lld",13,NbRead); | ~~~^ ~~~~~~ | | | | | int64_t {aka long int} | long long int | %ld /<>/debruijn-v4/minia/Utils.cpp: In instantiation of ‘Bloom* bloom_create_bloo1(T*, bool) [with T = BloomCpt]’: /<>/debruijn-v4/minia/Utils.cpp:167:85: required from here /<>/debruijn-v4/minia/Utils.cpp:121:53: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 121 | printf("load bloom from dump, containing %lli solid kmers b1_size %lli\n",nsolids,b1_size); | ~~~^ ~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %li /<>/debruijn-v4/minia/Utils.cpp:121:79: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 121 | printf("load bloom from dump, containing %lli solid kmers b1_size %lli\n",nsolids,b1_size); | ~~~^ ~~~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/debruijn-v4/minia/Utils.cpp: In function ‘void end_kmer_count_partition(bool, Hash16*)’: /<>/debruijn-v4/minia/Utils.cpp:187:14: warning: ignoring return value of ‘int ftruncate(int, __off_t)’, declared with attribute warn_unused_result [-Wunused-result] 187 | ftruncate(fileno(F_kmercpt_write), 0); //erase previous file | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/debruijn-v4/minia/Utils.cpp:199:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 199 | fread(&cptk, sizeof(cptk), 1, F_kmercpt_read); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/debruijn-v4/minia/Utils.cpp:225:18: warning: ignoring return value of ‘int ftruncate(int, __off_t)’, declared with attribute warn_unused_result [-Wunused-result] 225 | ftruncate(fileno(F_kmercpt_read), 0); //erase previous file | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/debruijn-v4/minia/Utils.cpp: In function ‘char* return_file_name(const char*)’: /<>/debruijn-v4/minia/Utils.cpp:28:32: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 28 | sprintf(fileName,"%s.%s",prefix,suffix); | ^ In file included from /usr/include/stdio.h:867, from /<>/debruijn-v4/minia/Utils.h:1, from /<>/debruijn-v4/minia/Utils.cpp:1: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 1025) into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 50%] Building CXX object debruijn-v4/CMakeFiles/ks_debruijn4.dir/minia/SortingCount.cpp.o cd /<>/obj-x86_64-linux-gnu/debruijn-v4 && /usr/bin/c++ -Dkmer_type=__uint128_t -I/<>/debruijn-v4 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ks_debruijn4.dir/minia/SortingCount.cpp.o -c /<>/debruijn-v4/minia/SortingCount.cpp [ 51%] Building CXX object modules/CMakeFiles/ks_bubble_enumeration.dir/CycleCompression.cpp.o cd /<>/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/<>/modules -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ks_bubble_enumeration.dir/CycleCompression.cpp.o -c /<>/modules/CycleCompression.cpp /<>/debruijn-v4/minia/SortingCount.cpp: In function ‘void sorting_count(Bank*, char*, int, int, bool, int, bool)’: /<>/debruijn-v4/minia/SortingCount.cpp:56:15: warning: ignoring return value of ‘char* getcwd(char*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] 56 | getcwd(current_path,sizeof(current_path)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/debruijn-v4/minia/SortingCount.cpp:283:15: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] 283 | system("echo 3 > /proc/sys/vm/drop_caches"); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/debruijn-v4/minia/SortingCount.cpp:537:19: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] 537 | system("echo 3 > /proc/sys/vm/drop_caches"); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/debruijn-v4/minia/SortingCount.cpp:45:25: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 512 [-Wformat-overflow=] 45 | sprintf(p_buf, "%s/%s", temp_dir, ep->d_name); | ^~ ~~~~~~~~ In file included from /usr/include/stdio.h:867, from /<>/debruijn-v4/minia/SortingCount.h:1, from /<>/debruijn-v4/minia/SortingCount.cpp:1: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 2 and 1280 bytes into a destination of size 512 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 53%] Building CXX object debruijn-v4/CMakeFiles/ks_debruijn4.dir/minia/LinearCounter.cpp.o cd /<>/obj-x86_64-linux-gnu/debruijn-v4 && /usr/bin/c++ -Dkmer_type=__uint128_t -I/<>/debruijn-v4 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ks_debruijn4.dir/minia/LinearCounter.cpp.o -c /<>/debruijn-v4/minia/LinearCounter.cpp [ 54%] Building CXX object modules/CMakeFiles/ks_bubble_enumeration.dir/NGraph.cpp.o cd /<>/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/<>/modules -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ks_bubble_enumeration.dir/NGraph.cpp.o -c /<>/modules/NGraph.cpp [ 55%] Building CXX object debruijn-v4/CMakeFiles/ks_debruijn4.dir/minia/Debloom.cpp.o cd /<>/obj-x86_64-linux-gnu/debruijn-v4 && /usr/bin/c++ -Dkmer_type=__uint128_t -I/<>/debruijn-v4 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ks_debruijn4.dir/minia/Debloom.cpp.o -c /<>/debruijn-v4/minia/Debloom.cpp [ 56%] Building CXX object modules/CMakeFiles/ks_clean_duplicates.dir/CGraph.cpp.o cd /<>/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/<>/modules -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ks_clean_duplicates.dir/CGraph.cpp.o -c /<>/modules/CGraph.cpp /<>/debruijn-v4/minia/Debloom.cpp: In function ‘int debloom(int, int)’: /<>/debruijn-v4/minia/Debloom.cpp:154:89: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 154 | if ((NbSolidKmer%10000)==0) fprintf (stderr,"%c Writing positive Bloom Kmers %lld",13,NbSolidKmer); | ~~~^ ~~~~~~~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %ld /<>/debruijn-v4/minia/Debloom.cpp:158:26: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 158 | fprintf(stderr,"\n%lli kmers written\n",cc); | ~~~^ ~~ | | | | long long int uint64_t {aka long unsigned int} | %li /<>/debruijn-v4/minia/Debloom.cpp:191:76: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 191 | if ((NbSolidKmer%10000)==0) fprintf (stderr,"%cBuild Hash table %lld",13,NbSolidKmer); | ~~~^ ~~~~~~~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %ld /<>/debruijn-v4/minia/Debloom.cpp:195:58: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 195 | fprintf(stderr,"End of debloom partition %lli / %lld \n",hasht1->nb_elem,max_kmer_per_part); | ~~~^ ~~~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %li /<>/debruijn-v4/minia/Debloom.cpp:195:65: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 195 | fprintf(stderr,"End of debloom partition %lli / %lld \n",hasht1->nb_elem,max_kmer_per_part); | ~~~^ ~~~~~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld /<>/debruijn-v4/minia/Debloom.cpp:208:34: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 208 | fprintf(stderr,"\n%lli false positives written , partition %i \n",n_false_positives,numpart); | ~~~^ ~~~~~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %li /<>/debruijn-v4/minia/Debloom.cpp:225:81: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 225 | fprintf(stderr,"Total nb false positives stored in the Debloom hashtable %lli \n",n_false_positives); | ~~~^ ~~~~~~~~~~~~~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li /<>/debruijn-v4/minia/Debloom.cpp: In function ‘Set* load_false_positives()’: /<>/debruijn-v4/minia/Debloom.cpp:280:112: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘int64_t’ {aka ‘long int’} [-Wformat=] 280 | if ((NbInsertedKmers%10000)==0) fprintf (stderr,(char*)"%cInsert false positive Kmers in hash table %lld",13,NbInsertedKmers); | ~~~^ ~~~~~~~~~~~~~~~ | | | | | int64_t {aka long int} | long long int | %ld /<>/debruijn-v4/minia/Debloom.cpp:284:36: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 3 has type ‘int64_t’ {aka ‘long int’} [-Wformat=] 284 | fprintf (stderr,"\nInserted %lld false positive kmers in the hash structure.\n\n",NbInsertedKmers); | ~~~^ ~~~~~~~~~~~~~~~ | | | | long long int int64_t {aka long int} | %ld /<>/debruijn-v4/minia/Debloom.cpp: In function ‘void print_size_summary(FPSet*)’: /<>/debruijn-v4/minia/Debloom.cpp:445:50: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 445 | fprintf(stderr, "Size of the FP table : %lli FP x %d bits = %.2lf MB \n", fp->capacity(), bits_per_FP_element, toMB((double)(size_T1)) ); | ~~~^ ~~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %li /<>/debruijn-v4/minia/Debloom.cpp:448:47: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 448 | fprintf(stderr," Total %.2lf MB for %lld solid kmers ==> %.2lf bits / solid kmer\n\n", toMB(total_size), nbkmers_solid, total_size / nbkmers_solid); | ~~~^ ~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld /<>/debruijn-v4/minia/Debloom.cpp: In function ‘void print_size_summary(FPSetCascading4*)’: /<>/debruijn-v4/minia/Debloom.cpp:465:47: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 465 | fprintf(stderr," Total %.2lf MB for %lld solid kmers ==> %.2lf bits / solid kmer\n\n", toMB(total_size), nbkmers_solid, total_size / nbkmers_solid); | ~~~^ ~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld /<>/debruijn-v4/minia/Debloom.cpp: In function ‘void end_debloom_partition(bool)’: /<>/debruijn-v4/minia/Debloom.cpp:29:11: warning: ignoring return value of ‘int ftruncate(int, __off_t)’, declared with attribute warn_unused_result [-Wunused-result] 29 | ftruncate(fileno(F_debloom_write), 0); //erase previous file | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/modules/NGraph.cpp: In function ‘void read_graph_edges_new(NGraph&, FILE*, FILE*, FILE*, int*, int*)’: /<>/modules/NGraph.cpp:1050:68: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 1050 | for (int i = 0; i < *required_sequence+*file_index-2 ; i++) fgets(buffer, 100 * MAX, contents_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/modules/NGraph.cpp:1051:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] 1051 | fscanf(contents_file, "%d \n",&written_lines_before ); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/modules/NGraph.cpp:1052:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] 1052 | fscanf(contents_file, "%d \n",&written_lines_for_record ); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/modules/NGraph.cpp:1061:56: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 1061 | for (int i = 0; i < written_lines_before ; i++) fgets(buffer, 100 * MAX, data_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/modules/NGraph.cpp:1065:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 1065 | fgets(buffer, 100 * MAX, data_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/modules/NGraph.cpp: In function ‘void read_graph_nodes_new(NGraph&, FILE*, FILE*, FILE*, int*, int*)’: /<>/modules/NGraph.cpp:1097:68: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 1097 | for (int i = 0; i < *required_sequence+*file_index-2 ; i++) fgets(buffer, 100 * MAX, contents_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/modules/NGraph.cpp:1098:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] 1098 | fscanf(contents_file, "%d \n",&written_lines_before ); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/modules/NGraph.cpp:1099:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] 1099 | fscanf(contents_file, "%d \n",&written_lines_for_record ); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/modules/NGraph.cpp:1108:58: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 1108 | for (int i = 0; i < written_lines_before ; i++) { fgets(buffer, 100 * MAX, data_file); } | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/modules/NGraph.cpp:1112:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 1112 | fgets(buffer, 100 * MAX, data_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 58%] Building CXX object debruijn-v4/CMakeFiles/ks_debruijn4.dir/minia/Traversal.cpp.o cd /<>/obj-x86_64-linux-gnu/debruijn-v4 && /usr/bin/c++ -Dkmer_type=__uint128_t -I/<>/debruijn-v4 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ks_debruijn4.dir/minia/Traversal.cpp.o -c /<>/debruijn-v4/minia/Traversal.cpp [ 59%] Building CXX object modules/CMakeFiles/ks_clean_duplicates.dir/CEdge.cpp.o cd /<>/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/<>/modules -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ks_clean_duplicates.dir/CEdge.cpp.o -c /<>/modules/CEdge.cpp [ 60%] Building CXX object modules/CMakeFiles/ks_clean_duplicates.dir/LabelledCEdge.cpp.o cd /<>/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/<>/modules -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ks_clean_duplicates.dir/LabelledCEdge.cpp.o -c /<>/modules/LabelledCEdge.cpp [ 62%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/CGraph.cpp.o cd /<>/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/<>/modules -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ks_run_modules.dir/CGraph.cpp.o -c /<>/modules/CGraph.cpp [ 63%] Building CXX object modules/CMakeFiles/ks_clean_duplicates.dir/NNode.cpp.o cd /<>/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/<>/modules -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ks_clean_duplicates.dir/NNode.cpp.o -c /<>/modules/NNode.cpp [ 64%] Building CXX object modules/CMakeFiles/ks_clean_duplicates.dir/NEdge.cpp.o cd /<>/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/<>/modules -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ks_clean_duplicates.dir/NEdge.cpp.o -c /<>/modules/NEdge.cpp [ 65%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/CEdge.cpp.o cd /<>/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/<>/modules -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ks_run_modules.dir/CEdge.cpp.o -c /<>/modules/CEdge.cpp [ 67%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/LabelledCEdge.cpp.o cd /<>/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/<>/modules -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ks_run_modules.dir/LabelledCEdge.cpp.o -c /<>/modules/LabelledCEdge.cpp [ 68%] Building CXX object modules/CMakeFiles/ks_clean_duplicates.dir/Utils.cpp.o cd /<>/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/<>/modules -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ks_clean_duplicates.dir/Utils.cpp.o -c /<>/modules/Utils.cpp [ 69%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/NNode.cpp.o cd /<>/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/<>/modules -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ks_run_modules.dir/NNode.cpp.o -c /<>/modules/NNode.cpp [ 70%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/NEdge.cpp.o cd /<>/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/<>/modules -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ks_run_modules.dir/NEdge.cpp.o -c /<>/modules/NEdge.cpp [ 72%] Building CXX object debruijn-v4/CMakeFiles/ks_debruijn4.dir/minia/Terminator.cpp.o cd /<>/obj-x86_64-linux-gnu/debruijn-v4 && /usr/bin/c++ -Dkmer_type=__uint128_t -I/<>/debruijn-v4 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ks_debruijn4.dir/minia/Terminator.cpp.o -c /<>/debruijn-v4/minia/Terminator.cpp [ 73%] Linking CXX executable ../lib/kissplice/ks_clean_duplicates cd /<>/obj-x86_64-linux-gnu/modules && /usr/bin/cmake -E cmake_link_script CMakeFiles/ks_clean_duplicates.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ks_clean_duplicates.dir/CleanDuplicates.cpp.o CMakeFiles/ks_clean_duplicates.dir/CycleCompression.cpp.o CMakeFiles/ks_clean_duplicates.dir/NGraph.cpp.o CMakeFiles/ks_clean_duplicates.dir/CGraph.cpp.o CMakeFiles/ks_clean_duplicates.dir/CEdge.cpp.o CMakeFiles/ks_clean_duplicates.dir/LabelledCEdge.cpp.o CMakeFiles/ks_clean_duplicates.dir/NNode.cpp.o CMakeFiles/ks_clean_duplicates.dir/NEdge.cpp.o CMakeFiles/ks_clean_duplicates.dir/Utils.cpp.o -o ../lib/kissplice/ks_clean_duplicates make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 73%] Built target ks_clean_duplicates make -f modules/CMakeFiles/ks_error_removal.dir/build.make modules/CMakeFiles/ks_error_removal.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/modules /<>/obj-x86_64-linux-gnu/modules/CMakeFiles/ks_error_removal.dir/DependInfo.cmake --color= Scanning dependencies of target ks_error_removal make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/CMakeFiles/ks_error_removal.dir/build.make modules/CMakeFiles/ks_error_removal.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 74%] Building CXX object modules/CMakeFiles/ks_error_removal.dir/ErrorRemoval.cpp.o cd /<>/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/<>/modules -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ks_error_removal.dir/ErrorRemoval.cpp.o -c /<>/modules/ErrorRemoval.cpp /<>/debruijn-v4/minia/Terminator.cpp: In constructor ‘BranchingTerminator::BranchingTerminator(BinaryBank*, uint64_t, Bloom*, Set*)’: /<>/debruijn-v4/minia/Terminator.cpp:275:105: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 5 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 275 | fprintf (stderr,"%cExtrapolating the number of branching kmers from the first %dM kmers: %lld",13,(int)ceilf(nb_extrapolation/1024.0/1024.0),estimated_nb_branching_kmers); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld /<>/debruijn-v4/minia/Terminator.cpp:303:89: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘int64_t’ {aka ‘long int’} [-Wformat=] 303 | if ((nb_branching_kmers%500)==0) fprintf (stderr,"%cIndexing branching kmers %lld / ~%lld",13,nb_branching_kmers,estimated_nb_branching_kmers); | ~~~^ ~~~~~~~~~~~~~~~~~~ | | | | long long int int64_t {aka long int} | %ld /<>/debruijn-v4/minia/Terminator.cpp:303:97: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 5 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 303 | if ((nb_branching_kmers%500)==0) fprintf (stderr,"%cIndexing branching kmers %lld / ~%lld",13,nb_branching_kmers,estimated_nb_branching_kmers); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld /<>/debruijn-v4/minia/Terminator.cpp: In constructor ‘BranchingTerminator::BranchingTerminator(BinaryBank*, BinaryBank*, Bloom*, Set*)’: /<>/debruijn-v4/minia/Terminator.cpp:337:38: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 3 has type ‘int64_t’ {aka ‘long int’} [-Wformat=] 337 | fprintf (stderr,"\nLoaded %lld branching kmers x %lu B = %.1f MB\n",nb_branching_kmers,sizeof(cell),((1<)*1.0)/1024.0/1024.0); | ~~~^ ~~~~~~~~~~~~~~~~~~ | | | | long long int int64_t {aka long int} | %ld [ 75%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/SplitBcc.cpp.o cd /<>/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/<>/modules -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ks_run_modules.dir/SplitBcc.cpp.o -c /<>/modules/SplitBcc.cpp [ 77%] Building CXX object debruijn-v4/CMakeFiles/ks_debruijn4.dir/minia/OAHash.cpp.o cd /<>/obj-x86_64-linux-gnu/debruijn-v4 && /usr/bin/c++ -Dkmer_type=__uint128_t -I/<>/debruijn-v4 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ks_debruijn4.dir/minia/OAHash.cpp.o -c /<>/debruijn-v4/minia/OAHash.cpp [ 78%] Building CXX object modules/CMakeFiles/ks_bubble_enumeration.dir/CGraph.cpp.o cd /<>/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/<>/modules -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ks_bubble_enumeration.dir/CGraph.cpp.o -c /<>/modules/CGraph.cpp [ 79%] Building CXX object debruijn-v4/CMakeFiles/ks_debruijn4.dir/minia/GraphOutput.cpp.o cd /<>/obj-x86_64-linux-gnu/debruijn-v4 && /usr/bin/c++ -Dkmer_type=__uint128_t -I/<>/debruijn-v4 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ks_debruijn4.dir/minia/GraphOutput.cpp.o -c /<>/debruijn-v4/minia/GraphOutput.cpp [ 81%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/Utils.cpp.o cd /<>/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/<>/modules -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ks_run_modules.dir/Utils.cpp.o -c /<>/modules/Utils.cpp [ 82%] Building CXX object modules/CMakeFiles/ks_error_removal.dir/CEdge.cpp.o cd /<>/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/<>/modules -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ks_error_removal.dir/CEdge.cpp.o -c /<>/modules/CEdge.cpp [ 83%] Building CXX object modules/CMakeFiles/ks_bubble_enumeration.dir/CEdge.cpp.o cd /<>/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/<>/modules -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ks_bubble_enumeration.dir/CEdge.cpp.o -c /<>/modules/CEdge.cpp [ 84%] Building CXX object modules/CMakeFiles/ks_error_removal.dir/LabelledCEdge.cpp.o cd /<>/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/<>/modules -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ks_error_removal.dir/LabelledCEdge.cpp.o -c /<>/modules/LabelledCEdge.cpp /<>/debruijn-v4/minia/GraphOutput.cpp: In constructor ‘GraphOutput::GraphOutput(std::string, int, std::id_els)’: /<>/debruijn-v4/minia/GraphOutput.cpp:61:43: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long int’ [-Wformat=] 61 | printf("graph_format=%d first_id_nodes=%d first_id_edges=%d\n", graph_format, first_id_els.node, first_id_els.edge); | ~^ ~~~~~~~~~~~~~~~~~ | | | | int long int | %ld /<>/debruijn-v4/minia/GraphOutput.cpp:61:61: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 61 | printf("graph_format=%d first_id_nodes=%d first_id_edges=%d\n", graph_format, first_id_els.node, first_id_els.edge); | ~^ ~~~~~~~~~~~~~~~~~ | | | | int long int | %ld /<>/debruijn-v4/minia/GraphOutput.cpp: In constructor ‘GraphOutput::GraphOutput(std::string, int)’: /<>/debruijn-v4/minia/GraphOutput.cpp:73:43: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long int’ [-Wformat=] 73 | printf("graph_format=%d first_id_nodes=%d first_id_edges=%d\n", graph_format, first_id_els.node, first_id_els.edge); | ~^ ~~~~~~~~~~~~~~~~~ | | | | int long int | %ld /<>/debruijn-v4/minia/GraphOutput.cpp:73:61: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 73 | printf("graph_format=%d first_id_nodes=%d first_id_edges=%d\n", graph_format, first_id_els.node, first_id_els.edge); | ~^ ~~~~~~~~~~~~~~~~~ | | | | int long int | %ld /<>/debruijn-v4/minia/GraphOutput.cpp: In member function ‘void GraphOutput::close()’: /<>/debruijn-v4/minia/GraphOutput.cpp:108:78: warning: format ‘%s’ expects a matching ‘char*’ argument [-Wformat=] 108 | if(!edges || !nodes){fprintf(stderr,"Cannot open file %s, %s or %s, exit\n", json_edges_file_suffix.c_str(), json_nodes_file_suffix.c_str()); exit(1);} | ~^ | | | char* [ 87%] Linking CXX executable ../lib/kissplice/ks_run_modules [ 87%] Building CXX object modules/CMakeFiles/ks_bubble_enumeration.dir/LabelledCEdge.cpp.o cd /<>/obj-x86_64-linux-gnu/modules && /usr/bin/cmake -E cmake_link_script CMakeFiles/ks_run_modules.dir/link.txt --verbose=1 cd /<>/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/<>/modules -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ks_bubble_enumeration.dir/LabelledCEdge.cpp.o -c /<>/modules/LabelledCEdge.cpp /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ks_run_modules.dir/run.cpp.o CMakeFiles/ks_run_modules.dir/CycleCompression.cpp.o CMakeFiles/ks_run_modules.dir/NGraph.cpp.o CMakeFiles/ks_run_modules.dir/CGraph.cpp.o CMakeFiles/ks_run_modules.dir/CEdge.cpp.o CMakeFiles/ks_run_modules.dir/LabelledCEdge.cpp.o CMakeFiles/ks_run_modules.dir/NNode.cpp.o CMakeFiles/ks_run_modules.dir/NEdge.cpp.o CMakeFiles/ks_run_modules.dir/SplitBcc.cpp.o CMakeFiles/ks_run_modules.dir/Utils.cpp.o -o ../lib/kissplice/ks_run_modules [ 88%] Building CXX object modules/CMakeFiles/ks_error_removal.dir/Utils.cpp.o cd /<>/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/<>/modules -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ks_error_removal.dir/Utils.cpp.o -c /<>/modules/Utils.cpp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 88%] Built target ks_run_modules make -f modules/CMakeFiles/ks_print_bcc.dir/build.make modules/CMakeFiles/ks_print_bcc.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/modules /<>/obj-x86_64-linux-gnu/modules/CMakeFiles/ks_print_bcc.dir/DependInfo.cmake --color= Scanning dependencies of target ks_print_bcc make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/CMakeFiles/ks_print_bcc.dir/build.make modules/CMakeFiles/ks_print_bcc.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 89%] Building CXX object modules/CMakeFiles/ks_print_bcc.dir/PrintBcc.cpp.o cd /<>/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/<>/modules -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ks_print_bcc.dir/PrintBcc.cpp.o -c /<>/modules/PrintBcc.cpp [ 91%] Building CXX object modules/CMakeFiles/ks_bubble_enumeration.dir/NNode.cpp.o cd /<>/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/<>/modules -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ks_bubble_enumeration.dir/NNode.cpp.o -c /<>/modules/NNode.cpp [ 92%] Building CXX object modules/CMakeFiles/ks_bubble_enumeration.dir/NEdge.cpp.o cd /<>/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/<>/modules -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ks_bubble_enumeration.dir/NEdge.cpp.o -c /<>/modules/NEdge.cpp [ 93%] Linking CXX executable ../lib/kissplice/ks_error_removal cd /<>/obj-x86_64-linux-gnu/modules && /usr/bin/cmake -E cmake_link_script CMakeFiles/ks_error_removal.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ks_error_removal.dir/ErrorRemoval.cpp.o CMakeFiles/ks_error_removal.dir/CEdge.cpp.o CMakeFiles/ks_error_removal.dir/LabelledCEdge.cpp.o CMakeFiles/ks_error_removal.dir/Utils.cpp.o -o ../lib/kissplice/ks_error_removal make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 93%] Built target ks_error_removal [ 94%] Building CXX object modules/CMakeFiles/ks_bubble_enumeration.dir/Utils.cpp.o cd /<>/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/<>/modules -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ks_bubble_enumeration.dir/Utils.cpp.o -c /<>/modules/Utils.cpp In file included from /<>/modules/PrintBcc.cpp:51: /<>/modules/BubbleEnumeration.h:124:1: warning: ‘typedef’ was ignored in this declaration 124 | typedef struct Path { | ^~~~~~~ In file included from /<>/modules/PrintBcc.cpp:51: /<>/modules/BubbleEnumeration.h: In function ‘bool read_edges_and_nodes_withoptimIO(char*, char*, char*, char*, char*, int*, TEdgeFunctor, TNodeFunctor&) [with TEdgeFunctor = Printer; TNodeFunctor = Printer]’: /<>/modules/BubbleEnumeration.h:84:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] 84 | fscanf(info_file, "%d \n",&bcc_size ); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/modules/BubbleEnumeration.h:85:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] 85 | fscanf(info_file, "%d \n",&records_per_file ); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/modules/PrintBcc.cpp:50: /<>/modules/CGraph.h: In function ‘bool read_node_noncontigous_file_withoptimIO(FILE*, FILE*, int*, int*, TFunctor&) [with TFunctor = Printer]’: /<>/modules/CGraph.h:252:68: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 252 | for (int i = 0; i < *required_sequence+*file_index-2 ; i++) fgets(buffer, 100 * MAX, contents_file_node); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/modules/CGraph.h:253:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] 253 | fscanf(contents_file_node, "%d \n",&written_lines_before ); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/modules/CGraph.h:254:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] 254 | fscanf(contents_file_node, "%d \n",&written_lines_for_record ); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/modules/CGraph.h:265:58: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 265 | for (int i = 0; i < written_lines_before ; i++) fgets(buffer, 100 * MAX, node_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/modules/PrintBcc.cpp: In member function ‘void Printer::operator()(FILE*, int)’: /<>/modules/PrintBcc.cpp:64:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 64 | fgets(buffer, 100 * MAX, in_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/modules/PrintBcc.cpp:50: /<>/modules/CGraph.h: In function ‘void read_edge_file_withoptimIO(FILE*, FILE*, int*, int*, TFunctor&) [with TFunctor = Printer]’: /<>/modules/CGraph.h:330:68: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 330 | for (int i = 0; i < *required_sequence+*file_index-2 ; i++) fgets(buffer, 100 * MAX, contents_file_edge); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/modules/CGraph.h:331:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] 331 | fscanf(contents_file_edge, "%d \n",&written_lines_before ); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/modules/CGraph.h:332:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] 332 | fscanf(contents_file_edge, "%d \n",&written_lines_for_record ); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/modules/CGraph.h:339:56: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 339 | for (int i = 0; i < written_lines_before ; i++) fgets(buffer, 100 * MAX, edge_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 96%] Linking CXX executable ../lib/kissplice/ks_debruijn4 cd /<>/obj-x86_64-linux-gnu/debruijn-v4 && /usr/bin/cmake -E cmake_link_script CMakeFiles/ks_debruijn4.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ks_debruijn4.dir/main.cpp.o CMakeFiles/ks_debruijn4.dir/minia/Pool.cpp.o CMakeFiles/ks_debruijn4.dir/minia/Bank.cpp.o CMakeFiles/ks_debruijn4.dir/minia/Bloom.cpp.o CMakeFiles/ks_debruijn4.dir/minia/Hash16.cpp.o CMakeFiles/ks_debruijn4.dir/minia/Kmer.cpp.o CMakeFiles/ks_debruijn4.dir/minia/Set.cpp.o CMakeFiles/ks_debruijn4.dir/minia/Utils.cpp.o CMakeFiles/ks_debruijn4.dir/minia/SortingCount.cpp.o CMakeFiles/ks_debruijn4.dir/minia/LinearCounter.cpp.o CMakeFiles/ks_debruijn4.dir/minia/Debloom.cpp.o CMakeFiles/ks_debruijn4.dir/minia/Traversal.cpp.o CMakeFiles/ks_debruijn4.dir/minia/Terminator.cpp.o CMakeFiles/ks_debruijn4.dir/minia/OAHash.cpp.o CMakeFiles/ks_debruijn4.dir/minia/GraphOutput.cpp.o -o ../lib/kissplice/ks_debruijn4 -lz [ 97%] Building CXX object modules/CMakeFiles/ks_print_bcc.dir/Utils.cpp.o cd /<>/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/<>/modules -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ks_print_bcc.dir/Utils.cpp.o -c /<>/modules/Utils.cpp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 97%] Built target ks_debruijn4 [ 98%] Linking CXX executable ../lib/kissplice/ks_bubble_enumeration cd /<>/obj-x86_64-linux-gnu/modules && /usr/bin/cmake -E cmake_link_script CMakeFiles/ks_bubble_enumeration.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ks_bubble_enumeration.dir/BubbleEnumeration.cpp.o CMakeFiles/ks_bubble_enumeration.dir/CycleCompression.cpp.o CMakeFiles/ks_bubble_enumeration.dir/NGraph.cpp.o CMakeFiles/ks_bubble_enumeration.dir/CGraph.cpp.o CMakeFiles/ks_bubble_enumeration.dir/CEdge.cpp.o CMakeFiles/ks_bubble_enumeration.dir/LabelledCEdge.cpp.o CMakeFiles/ks_bubble_enumeration.dir/NNode.cpp.o CMakeFiles/ks_bubble_enumeration.dir/NEdge.cpp.o CMakeFiles/ks_bubble_enumeration.dir/Utils.cpp.o -o ../lib/kissplice/ks_bubble_enumeration make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 98%] Built target ks_bubble_enumeration [100%] Linking CXX executable ../lib/kissplice/ks_print_bcc cd /<>/obj-x86_64-linux-gnu/modules && /usr/bin/cmake -E cmake_link_script CMakeFiles/ks_print_bcc.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ks_print_bcc.dir/PrintBcc.cpp.o CMakeFiles/ks_print_bcc.dir/Utils.cpp.o -o ../lib/kissplice/ks_print_bcc make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target ks_print_bcc make[2]: Leaving directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/<>/obj-x86_64-linux-gnu' dh_auto_test cd obj-x86_64-linux-gnu && make -j4 test ARGS\+=-j4 make[1]: Entering directory '/<>/obj-x86_64-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process -j4 Test project /<>/obj-x86_64-linux-gnu Start 1: KisspliceBasicTest Start 2: KisspliceDBGTest Start 3: KisspliceTwoSequencesTest Start 4: KisspliceGraphAndSequenceTest 1/8 Test #1: KisspliceBasicTest ............... Passed 0.04 sec Start 5: KisspliceGraphTest 2/8 Test #4: KisspliceGraphAndSequenceTest .... Passed 1.57 sec Start 6: ksBubbleEnumerationTest 3/8 Test #5: KisspliceGraphTest ............... Passed 1.77 sec Start 7: ksRunModulesTest 4/8 Test #6: ksBubbleEnumerationTest .......... Passed 0.28 sec Start 8: ksErrorRemovalTest 5/8 Test #7: ksRunModulesTest ................. Passed 0.19 sec 6/8 Test #8: ksErrorRemovalTest ............... Passed 0.31 sec 7/8 Test #3: KisspliceTwoSequencesTest ........ Passed 29.85 sec 8/8 Test #2: KisspliceDBGTest ................. Passed 33.15 sec 100% tests passed, 0 tests failed out of 8 Total Test time (real) = 33.15 sec make[1]: Leaving directory '/<>/obj-x86_64-linux-gnu' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --with python2 dh_testroot dh_prep dh_auto_install cd obj-x86_64-linux-gnu && make -j4 install DESTDIR=/<>/debian/kissplice AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/CMakeFiles /<>/obj-x86_64-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/obj-x86_64-linux-gnu' make -f debruijn-v4/CMakeFiles/ks_debruijn4.dir/build.make debruijn-v4/CMakeFiles/ks_debruijn4.dir/depend make -f thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/build.make thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/depend make -f thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/build.make thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/depend make -f modules/CMakeFiles/ks_clean_duplicates.dir/build.make modules/CMakeFiles/ks_clean_duplicates.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/debruijn-v4 /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/debruijn-v4 /<>/obj-x86_64-linux-gnu/debruijn-v4/CMakeFiles/ks_debruijn4.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/thirdparty/kissreads/src /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/thirdparty/kissreads/src /<>/obj-x86_64-linux-gnu/thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/thirdparty/kissreads/src /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/thirdparty/kissreads/src /<>/obj-x86_64-linux-gnu/thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/modules /<>/obj-x86_64-linux-gnu/modules/CMakeFiles/ks_clean_duplicates.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/build.make thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f debruijn-v4/CMakeFiles/ks_debruijn4.dir/build.make debruijn-v4/CMakeFiles/ks_debruijn4.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/CMakeFiles/ks_clean_duplicates.dir/build.make modules/CMakeFiles/ks_clean_duplicates.dir/build make -f thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/build.make thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'modules/CMakeFiles/ks_clean_duplicates.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'debruijn-v4/CMakeFiles/ks_debruijn4.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 54%] Built target ks_clean_duplicates [ 60%] Built target ks_kissreadsSplice [ 59%] Built target ks_kissreadsSNPS [ 63%] Built target ks_debruijn4 make -f modules/CMakeFiles/ks_bubble_enumeration.dir/build.make modules/CMakeFiles/ks_bubble_enumeration.dir/depend make -f modules/CMakeFiles/ks_run_modules.dir/build.make modules/CMakeFiles/ks_run_modules.dir/depend make -f modules/CMakeFiles/ks_error_removal.dir/build.make modules/CMakeFiles/ks_error_removal.dir/depend make -f modules/CMakeFiles/ks_print_bcc.dir/build.make modules/CMakeFiles/ks_print_bcc.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/modules /<>/obj-x86_64-linux-gnu/modules/CMakeFiles/ks_bubble_enumeration.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/modules /<>/obj-x86_64-linux-gnu/modules/CMakeFiles/ks_run_modules.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/modules /<>/obj-x86_64-linux-gnu/modules/CMakeFiles/ks_error_removal.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/modules /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/modules /<>/obj-x86_64-linux-gnu/modules/CMakeFiles/ks_print_bcc.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/CMakeFiles/ks_print_bcc.dir/build.make modules/CMakeFiles/ks_print_bcc.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/CMakeFiles/ks_error_removal.dir/build.make modules/CMakeFiles/ks_error_removal.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/CMakeFiles/ks_bubble_enumeration.dir/build.make modules/CMakeFiles/ks_bubble_enumeration.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/CMakeFiles/ks_run_modules.dir/build.make modules/CMakeFiles/ks_run_modules.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'modules/CMakeFiles/ks_print_bcc.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'modules/CMakeFiles/ks_bubble_enumeration.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'modules/CMakeFiles/ks_run_modules.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'modules/CMakeFiles/ks_error_removal.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 67%] Built target ks_print_bcc [ 81%] Built target ks_run_modules [ 93%] Built target ks_bubble_enumeration [100%] Built target ks_error_removal make[2]: Leaving directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/debian/kissplice/usr/bin/kissplice -- Installing: /<>/debian/kissplice/usr/lib/kissplice/ks_debruijn4 -- Installing: /<>/debian/kissplice/usr/lib/kissplice/ks_kissreadsSNPS -- Installing: /<>/debian/kissplice/usr/lib/kissplice/ks_kissreadsSplice -- Installing: /<>/debian/kissplice/usr/lib/kissplice/ks_clean_duplicates -- Installing: /<>/debian/kissplice/usr/lib/kissplice/ks_bubble_enumeration -- Installing: /<>/debian/kissplice/usr/lib/kissplice/ks_run_modules -- Installing: /<>/debian/kissplice/usr/lib/kissplice/ks_error_removal -- Installing: /<>/debian/kissplice/usr/lib/kissplice/ks_print_bcc -- Installing: /<>/debian/kissplice/usr/share/man/man1/kissplice.1 -- Installing: /<>/debian/kissplice/usr/share/doc/kissplice/user_guide.pdf make[1]: Leaving directory '/<>/obj-x86_64-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/<>' mkdir -p debian/kissplice/usr/share/kissplice mv debian/kissplice/usr/bin/kissplice debian/kissplice/usr/share/kissplice/kissplice.py make[1]: Leaving directory '/<>' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_python2 I: dh_python2 tools:114: replacing shebang in debian/kissplice/usr/share/kissplice/kissplice.py dh_perl dh_link dh_strip_nondeterminism debian/rules override_dh_compress make[1]: Entering directory '/<>' dh_compress --exclude=.pdf make[1]: Leaving directory '/<>' dh_fixperms dh_missing dh_dwz dh_strip dh_makeshlibs dh_shlibdeps dh_installdeb dh_gencontrol dh_md5sums dh_builddeb INFO: pkgstriptranslations version 144 INFO: pkgstriptranslations version 144 pkgstriptranslations: processing kissplice-dbgsym (in debian/.debhelper/kissplice/dbgsym-root); do_strip: , oemstrip: pkgstriptranslations: processing kissplice (in debian/kissplice); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/kissplice/DEBIAN/control, package kissplice, directory debian/kissplice pkgstripfiles: Truncating usr/share/doc/kissplice/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package kissplice ... pkgstripfiles: No PNG files. dpkg-deb: building package 'kissplice' in '../kissplice_2.4.0-p1-5ubuntu1_amd64.deb'. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/kissplice/dbgsym-root/DEBIAN/control, package kissplice-dbgsym, directory debian/.debhelper/kissplice/dbgsym-root dpkg-deb: building package 'kissplice-dbgsym' in 'debian/.debhelper/scratch-space/build-kissplice/kissplice-dbgsym_2.4.0-p1-5ubuntu1_amd64.deb'. Renaming kissplice-dbgsym_2.4.0-p1-5ubuntu1_amd64.deb to kissplice-dbgsym_2.4.0-p1-5ubuntu1_amd64.ddeb dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary -mLaunchpad Build Daemon >../kissplice_2.4.0-p1-5ubuntu1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20200318-1411 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ kissplice_2.4.0-p1-5ubuntu1_amd64.changes: ------------------------------------------ Format: 1.8 Date: Wed, 18 Mar 2020 15:03:42 +0100 Source: kissplice Binary: kissplice Architecture: amd64 Version: 2.4.0-p1-5ubuntu1 Distribution: focal-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Matthias Klose Description: kissplice - Detection of various kinds of polymorphisms in RNA-seq data Changes: kissplice (2.4.0-p1-5ubuntu1) focal; urgency=medium . * Build-depend on python-all-dev. Checksums-Sha1: cde6b2cf0daaf0ae2f8b413b382a25e62a9d57c2 2309472 kissplice-dbgsym_2.4.0-p1-5ubuntu1_amd64.ddeb b79a560878dcc045527136bfecff457edbf0c57a 7863 kissplice_2.4.0-p1-5ubuntu1_amd64.buildinfo 5f93350a722cb0341324114ba411ec93ca4d061b 790768 kissplice_2.4.0-p1-5ubuntu1_amd64.deb Checksums-Sha256: 98d7623b76c361085e9186b670ccc4358d6eeb01b12d8210115f4e9fc863dfa0 2309472 kissplice-dbgsym_2.4.0-p1-5ubuntu1_amd64.ddeb fbc0cc58aaba59048fdacd0a058c4bd829ef6126b642a426ef04f24a6281a489 7863 kissplice_2.4.0-p1-5ubuntu1_amd64.buildinfo e04089ae681f4482408925130e9087583122cfce37d7f21de8f69dea3070634d 790768 kissplice_2.4.0-p1-5ubuntu1_amd64.deb Files: d2dbb10a41747a6dd86c522361051712 2309472 debug optional kissplice-dbgsym_2.4.0-p1-5ubuntu1_amd64.ddeb f685779e98c62900fbb551987493ea45 7863 science optional kissplice_2.4.0-p1-5ubuntu1_amd64.buildinfo 39d7f1db57bee094b8245fecc9c0fe25 790768 science optional kissplice_2.4.0-p1-5ubuntu1_amd64.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ kissplice_2.4.0-p1-5ubuntu1_amd64.deb ------------------------------------- new debian package, version 2.0. size 790768 bytes: control archive=1636 bytes. 961 bytes, 18 lines control 1203 bytes, 17 lines md5sums 179 bytes, 9 lines * postinst #!/bin/sh 257 bytes, 14 lines * prerm #!/bin/sh Package: kissplice Version: 2.4.0-p1-5ubuntu1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1530 Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libstdc++6 (>= 5.2), zlib1g (>= 1:1.2.3.4), python2:any Section: science Priority: optional Homepage: http://kissplice.prabi.fr/ Description: Detection of various kinds of polymorphisms in RNA-seq data KisSplice is a piece of software that enables the analysis of RNA-seq data with or without a reference genome. It is an exact local transcriptome assembler that allows one to identify SNPs, indels and alternative splicing events. It can deal with an arbitrary number of biological conditions, and will quantify each variant in each condition. It has been tested on Illumina datasets of up to 1G reads. Its memory consumption is around 5Gb for 100M reads. drwxr-xr-x root/root 0 2020-03-18 14:03 ./ drwxr-xr-x root/root 0 2020-03-18 14:03 ./usr/ drwxr-xr-x root/root 0 2020-03-18 14:03 ./usr/bin/ lrwxrwxrwx root/root 0 2020-03-18 14:03 ./usr/bin/kissplice -> ../share/kissplice/kissplice.py drwxr-xr-x root/root 0 2020-03-18 14:03 ./usr/lib/ drwxr-xr-x root/root 0 2020-03-18 14:03 ./usr/lib/kissplice/ -rwxr-xr-x root/root 141712 2020-03-18 14:03 ./usr/lib/kissplice/ks_bubble_enumeration -rwxr-xr-x root/root 113040 2020-03-18 14:03 ./usr/lib/kissplice/ks_clean_duplicates -rwxr-xr-x root/root 191040 2020-03-18 14:03 ./usr/lib/kissplice/ks_debruijn4 -rwxr-xr-x root/root 39312 2020-03-18 14:03 ./usr/lib/kissplice/ks_error_removal -rwxr-xr-x root/root 80184 2020-03-18 14:03 ./usr/lib/kissplice/ks_kissreadsSNPS -rwxr-xr-x root/root 80184 2020-03-18 14:03 ./usr/lib/kissplice/ks_kissreadsSplice -rwxr-xr-x root/root 22928 2020-03-18 14:03 ./usr/lib/kissplice/ks_print_bcc -rwxr-xr-x root/root 100752 2020-03-18 14:03 ./usr/lib/kissplice/ks_run_modules drwxr-xr-x root/root 0 2020-03-18 14:03 ./usr/share/ drwxr-xr-x root/root 0 2020-03-18 14:03 ./usr/share/doc-base/ -rw-r--r-- root/root 601 2019-08-12 11:07 ./usr/share/doc-base/kissplice drwxr-xr-x root/root 0 2020-03-18 14:03 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-03-18 14:03 ./usr/share/doc/kissplice/ -rw-r--r-- root/root 1101 2020-03-18 14:03 ./usr/share/doc/kissplice/changelog.Debian.gz -rw-r--r-- root/root 2885 2019-08-12 11:07 ./usr/share/doc/kissplice/copyright drwxr-xr-x root/root 0 2020-03-18 14:03 ./usr/share/doc/kissplice/examples/ -rw-r--r-- root/root 58800 2015-09-12 12:39 ./usr/share/doc/kissplice/examples/reads1.fa -rw-r--r-- root/root 68425 2015-09-12 12:39 ./usr/share/doc/kissplice/examples/reads2.fa -rw-r--r-- root/root 585793 2016-04-14 15:38 ./usr/share/doc/kissplice/user_guide.pdf drwxr-xr-x root/root 0 2020-03-18 14:03 ./usr/share/kissplice/ -rwxr-xr-x root/root 48673 2020-03-18 14:03 ./usr/share/kissplice/kissplice.py drwxr-xr-x root/root 0 2020-03-18 14:03 ./usr/share/man/ drwxr-xr-x root/root 0 2020-03-18 14:03 ./usr/share/man/man1/ -rw-r--r-- root/root 1170 2020-03-18 14:03 ./usr/share/man/man1/kissplice.1.gz drwxr-xr-x root/root 0 2020-03-18 14:03 ./usr/share/python/ drwxr-xr-x root/root 0 2020-03-18 14:03 ./usr/share/python/runtime.d/ -rwxr-xr-x root/root 139 2020-03-18 14:03 ./usr/share/python/runtime.d/kissplice.rtupdate +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build-Space: 82980 Build-Time: 64 Distribution: focal-proposed Host Architecture: amd64 Install-Time: 23 Job: kissplice_2.4.0-p1-5ubuntu1.dsc Machine Architecture: amd64 Package: kissplice Package-Time: 88 Source-Version: 2.4.0-p1-5ubuntu1 Space: 82980 Status: successful Version: 2.4.0-p1-5ubuntu1 -------------------------------------------------------------------------------- Finished at 20200318-1411 Build needed 00:01:28, 82980k disc space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=focal --arch=amd64 PACKAGEBUILD-18851928 Scanning for processes to kill in build PACKAGEBUILD-18851928