RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux fisher03 3.13.0-8-generic #28-Ubuntu SMP Tue Feb 11 17:58:07 UTC 2014 ppc64le Buildd toolchain package versions: launchpad-buildd_121~0.IS.08.04.0 python-lpbuildd_121~0.IS.08.04.0 dpkg-dev_1.17.5ubuntu4. Syncing the system clock with the buildd NTP service... 18 Feb 21:51:25 ntpdate[3966]: adjust time server 10.211.37.1 offset -0.000112 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-5600569', '/home/buildd/filecache-default/1418c9e5f0eb143d9f77e4665c5b7c89c42011cc'] Unpacking chroot for build PACKAGEBUILD-5600569 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-5600569'] Mounting chroot for build PACKAGEBUILD-5600569 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-5600569', 'deb http://ftpmaster.internal/ubuntu trusty main universe'] Overriding sources.list in build-PACKAGEBUILD-5600569 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-5600569', 'ppc64el'] Updating debian chroot for build PACKAGEBUILD-5600569 Ign http://ftpmaster.internal trusty InRelease Ign http://archive-team.internal trusty InRelease Ign http://ftpmaster.internal trusty InRelease Ign http://archive-team.internal trusty Release.gpg Get:1 http://ftpmaster.internal trusty Release.gpg [933 B] Hit http://archive-team.internal trusty Release Get:2 http://ftpmaster.internal trusty Release.gpg [933 B] Ign http://archive-team.internal trusty/main ppc64el Packages/DiffIndex Get:3 http://ftpmaster.internal trusty Release [58.5 kB] Get:4 http://ftpmaster.internal trusty Release [58.5 kB] Get:5 http://ftpmaster.internal trusty/main ppc64el Packages [1220 kB] Ign http://archive-team.internal trusty/main Translation-en Hit http://archive-team.internal trusty/main ppc64el Packages Get:6 http://ftpmaster.internal trusty/universe ppc64el Packages [3889 kB] Get:7 http://ftpmaster.internal trusty/main Translation-en [760 kB] Get:8 http://ftpmaster.internal trusty/universe Translation-en [4060 kB] Get:9 http://ftpmaster.internal trusty/main ppc64el Packages [1226 kB] Get:10 http://ftpmaster.internal trusty/universe ppc64el Packages [5005 kB] Get:11 http://ftpmaster.internal trusty/main Translation-en [760 kB] Get:12 http://ftpmaster.internal trusty/universe Translation-en [4056 kB] Fetched 21.1 MB in 10s (2083 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: gcc-4.9-base libgcc1 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 43.4 kB of archives. After this operation, 1024 B of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ trusty/main gcc-4.9-base ppc64el 4.9-20140217-0ubuntu1 [14.3 kB] Get:2 http://ftpmaster.internal/ubuntu/ trusty/main libgcc1 ppc64el 1:4.9-20140217-0ubuntu1 [29.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 43.4 kB in 0s (89.1 kB/s) (Reading database ... 11450 files and directories currently installed.) Preparing to unpack .../gcc-4.9-base_4.9-20140217-0ubuntu1_ppc64el.deb ... Unpacking gcc-4.9-base:ppc64el (4.9-20140217-0ubuntu1) over (4.9-20140213-0ubuntu2) ... Setting up gcc-4.9-base:ppc64el (4.9-20140217-0ubuntu1) ... (Reading database ... 11450 files and directories currently installed.) Preparing to unpack .../libgcc1_1%3a4.9-20140217-0ubuntu1_ppc64el.deb ... Unpacking libgcc1:ppc64el (1:4.9-20140217-0ubuntu1) over (1:4.9-20140213-0ubuntu2) ... Setting up libgcc1:ppc64el (1:4.9-20140217-0ubuntu1) ... Processing triggers for libc-bin (2.18-0ubuntu7) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-5600569', 'ppc64el', 'trusty', '--nolog', '--batch', '--archive=ubuntu', '--dist=trusty', '--purpose=PRIMARY', '--architecture=ppc64el', '--comp=universe', 'kalign_2.03+20110620-2.dsc'] Initiating build PACKAGEBUILD-5600569 with 8 jobs across 8 processor cores. Kernel reported to sbuild: 3.13.0-8-generic #28-Ubuntu SMP Tue Feb 11 17:58:07 UTC 2014 ppc64le Automatic build of kalign_2.03+20110620-2 on fisher03 by sbuild/ppc64el 1.170.5 Build started at 20140218-2151 ****************************************************************************** kalign_2.03+20110620-2.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 9) Checking for already installed source dependencies... debhelper: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: apparmor-easyprof bsdmainutils dh-apparmor dh-python file gettext gettext-base groff-base intltool-debian libasprintf0c2 libcroco3 libexpat1 libglib2.0-0 libmagic1 libmpdec2 libpipeline1 libpython3-stdlib libpython3.4-minimal libpython3.4-stdlib libssl1.0.0 libunistring0 libxml2 man-db mime-support po-debconf python3 python3-minimal python3.4 python3.4-minimal Suggested packages: wamerican wordlist whois vacation dh-make gettext-doc groff less www-browser libmail-box-perl python3-doc python3-tk python3.4-doc binfmt-support Recommended packages: curl wget lynx-cur libasprintf-dev libgettextpo-dev libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl The following NEW packages will be installed: apparmor-easyprof bsdmainutils debhelper dh-apparmor dh-python file gettext gettext-base groff-base intltool-debian libasprintf0c2 libcroco3 libexpat1 libglib2.0-0 libmagic1 libmpdec2 libpipeline1 libpython3-stdlib libpython3.4-minimal libpython3.4-stdlib libssl1.0.0 libunistring0 libxml2 man-db mime-support po-debconf python3 python3-minimal python3.4 python3.4-minimal 0 upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 11.0 MB of archives. After this operation, 47.8 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ trusty/main libexpat1 ppc64el 2.1.0-4ubuntu1 [79.5 kB] Get:2 http://ftpmaster.internal/ubuntu/ trusty/main libmagic1 ppc64el 1:5.14-2ubuntu1 [194 kB] Get:3 http://ftpmaster.internal/ubuntu/ trusty/main libssl1.0.0 ppc64el 1.0.1f-1ubuntu1 [762 kB] Get:4 http://ftpmaster.internal/ubuntu/ trusty/main libasprintf0c2 ppc64el 0.18.3.1-1ubuntu2 [6748 B] Get:5 http://ftpmaster.internal/ubuntu/ trusty/main libglib2.0-0 ppc64el 2.39.4-0ubuntu1 [982 kB] Get:6 http://ftpmaster.internal/ubuntu/ trusty/main libpipeline1 ppc64el 1.2.6-2 [22.6 kB] Get:7 http://ftpmaster.internal/ubuntu/ trusty/main libxml2 ppc64el 2.9.1+dfsg1-3ubuntu3 [601 kB] Get:8 http://ftpmaster.internal/ubuntu/ trusty/main groff-base ppc64el 1.22.2-5 [1249 kB] Get:9 http://ftpmaster.internal/ubuntu/ trusty/main bsdmainutils ppc64el 9.0.5ubuntu1 [173 kB] Get:10 http://ftpmaster.internal/ubuntu/ trusty/main man-db ppc64el 2.6.6-1 [847 kB] Get:11 http://ftpmaster.internal/ubuntu/ trusty/main libcroco3 ppc64el 0.6.8-2ubuntu1 [75.4 kB] Get:12 http://ftpmaster.internal/ubuntu/ trusty/main libmpdec2 ppc64el 2.4.0-6 [83.9 kB] Get:13 http://ftpmaster.internal/ubuntu/ trusty/main libpython3.4-minimal ppc64el 3.4~rc1-1build1 [440 kB] Get:14 http://ftpmaster.internal/ubuntu/ trusty/main mime-support all 3.54ubuntu1 [31.7 kB] Get:15 http://ftpmaster.internal/ubuntu/ trusty/main libpython3.4-stdlib ppc64el 3.4~rc1-1build1 [1972 kB] Get:16 http://ftpmaster.internal/ubuntu/ trusty/main libunistring0 ppc64el 0.9.3-5ubuntu3 [262 kB] Get:17 http://ftpmaster.internal/ubuntu/ trusty/main python3.4-minimal ppc64el 3.4~rc1-1build1 [1147 kB] Get:18 http://ftpmaster.internal/ubuntu/ trusty/main python3.4 ppc64el 3.4~rc1-1build1 [159 kB] Get:19 http://ftpmaster.internal/ubuntu/ trusty/main python3-minimal ppc64el 3.4~rc1-1 [23.4 kB] Get:20 http://ftpmaster.internal/ubuntu/ trusty/main libpython3-stdlib ppc64el 3.4~rc1-1 [6976 B] Get:21 http://ftpmaster.internal/ubuntu/ trusty/main python3 ppc64el 3.4~rc1-1 [8654 B] Get:22 http://ftpmaster.internal/ubuntu/ trusty/main dh-python all 1.20140128-1ubuntu2 [51.0 kB] Get:23 http://ftpmaster.internal/ubuntu/ trusty/main file ppc64el 1:5.14-2ubuntu1 [19.2 kB] Get:24 http://ftpmaster.internal/ubuntu/ trusty/main gettext-base ppc64el 0.18.3.1-1ubuntu2 [47.2 kB] Get:25 http://ftpmaster.internal/ubuntu/ trusty/main gettext ppc64el 0.18.3.1-1ubuntu2 [840 kB] Get:26 http://ftpmaster.internal/ubuntu/ trusty/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:27 http://ftpmaster.internal/ubuntu/ trusty/main po-debconf all 1.0.16+nmu2ubuntu1 [210 kB] Get:28 http://ftpmaster.internal/ubuntu/ trusty/main apparmor-easyprof all 2.8.0-0ubuntu38 [20.1 kB] Get:29 http://ftpmaster.internal/ubuntu/ trusty/main dh-apparmor all 2.8.0-0ubuntu38 [7286 B] Get:30 http://ftpmaster.internal/ubuntu/ trusty/main debhelper all 9.20131127ubuntu2 [603 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 11.0 MB in 7s (1405 kB/s) Selecting previously unselected package libexpat1:ppc64el. (Reading database ... 11450 files and directories currently installed.) Preparing to unpack .../libexpat1_2.1.0-4ubuntu1_ppc64el.deb ... Unpacking libexpat1:ppc64el (2.1.0-4ubuntu1) ... Selecting previously unselected package libmagic1:ppc64el. Preparing to unpack .../libmagic1_1%3a5.14-2ubuntu1_ppc64el.deb ... Unpacking libmagic1:ppc64el (1:5.14-2ubuntu1) ... Selecting previously unselected package libssl1.0.0:ppc64el. Preparing to unpack .../libssl1.0.0_1.0.1f-1ubuntu1_ppc64el.deb ... Unpacking libssl1.0.0:ppc64el (1.0.1f-1ubuntu1) ... Selecting previously unselected package libasprintf0c2:ppc64el. Preparing to unpack .../libasprintf0c2_0.18.3.1-1ubuntu2_ppc64el.deb ... Unpacking libasprintf0c2:ppc64el (0.18.3.1-1ubuntu2) ... Selecting previously unselected package libglib2.0-0:ppc64el. Preparing to unpack .../libglib2.0-0_2.39.4-0ubuntu1_ppc64el.deb ... Unpacking libglib2.0-0:ppc64el (2.39.4-0ubuntu1) ... Selecting previously unselected package libpipeline1:ppc64el. Preparing to unpack .../libpipeline1_1.2.6-2_ppc64el.deb ... Unpacking libpipeline1:ppc64el (1.2.6-2) ... Selecting previously unselected package libxml2:ppc64el. Preparing to unpack .../libxml2_2.9.1+dfsg1-3ubuntu3_ppc64el.deb ... Unpacking libxml2:ppc64el (2.9.1+dfsg1-3ubuntu3) ... Selecting previously unselected package groff-base. Preparing to unpack .../groff-base_1.22.2-5_ppc64el.deb ... Unpacking groff-base (1.22.2-5) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../bsdmainutils_9.0.5ubuntu1_ppc64el.deb ... Unpacking bsdmainutils (9.0.5ubuntu1) ... Selecting previously unselected package man-db. Preparing to unpack .../man-db_2.6.6-1_ppc64el.deb ... Unpacking man-db (2.6.6-1) ... Selecting previously unselected package libcroco3:ppc64el. Preparing to unpack .../libcroco3_0.6.8-2ubuntu1_ppc64el.deb ... Unpacking libcroco3:ppc64el (0.6.8-2ubuntu1) ... Selecting previously unselected package libmpdec2:ppc64el. Preparing to unpack .../libmpdec2_2.4.0-6_ppc64el.deb ... Unpacking libmpdec2:ppc64el (2.4.0-6) ... Selecting previously unselected package libpython3.4-minimal:ppc64el. Preparing to unpack .../libpython3.4-minimal_3.4~rc1-1build1_ppc64el.deb ... Unpacking libpython3.4-minimal:ppc64el (3.4~rc1-1build1) ... Selecting previously unselected package mime-support. Preparing to unpack .../mime-support_3.54ubuntu1_all.deb ... Unpacking mime-support (3.54ubuntu1) ... Selecting previously unselected package libpython3.4-stdlib:ppc64el. Preparing to unpack .../libpython3.4-stdlib_3.4~rc1-1build1_ppc64el.deb ... Unpacking libpython3.4-stdlib:ppc64el (3.4~rc1-1build1) ... Selecting previously unselected package libunistring0:ppc64el. Preparing to unpack .../libunistring0_0.9.3-5ubuntu3_ppc64el.deb ... Unpacking libunistring0:ppc64el (0.9.3-5ubuntu3) ... Selecting previously unselected package python3.4-minimal. Preparing to unpack .../python3.4-minimal_3.4~rc1-1build1_ppc64el.deb ... Unpacking python3.4-minimal (3.4~rc1-1build1) ... Selecting previously unselected package python3.4. Preparing to unpack .../python3.4_3.4~rc1-1build1_ppc64el.deb ... Unpacking python3.4 (3.4~rc1-1build1) ... Selecting previously unselected package python3-minimal. Preparing to unpack .../python3-minimal_3.4~rc1-1_ppc64el.deb ... Unpacking python3-minimal (3.4~rc1-1) ... Selecting previously unselected package libpython3-stdlib:ppc64el. Preparing to unpack .../libpython3-stdlib_3.4~rc1-1_ppc64el.deb ... Unpacking libpython3-stdlib:ppc64el (3.4~rc1-1) ... Selecting previously unselected package python3. Preparing to unpack .../python3_3.4~rc1-1_ppc64el.deb ... Unpacking python3 (3.4~rc1-1) ... Selecting previously unselected package dh-python. Preparing to unpack .../dh-python_1.20140128-1ubuntu2_all.deb ... Unpacking dh-python (1.20140128-1ubuntu2) ... Selecting previously unselected package file. Preparing to unpack .../file_1%3a5.14-2ubuntu1_ppc64el.deb ... Unpacking file (1:5.14-2ubuntu1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../gettext-base_0.18.3.1-1ubuntu2_ppc64el.deb ... Unpacking gettext-base (0.18.3.1-1ubuntu2) ... Selecting previously unselected package gettext. Preparing to unpack .../gettext_0.18.3.1-1ubuntu2_ppc64el.deb ... Unpacking gettext (0.18.3.1-1ubuntu2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../intltool-debian_0.35.0+20060710.1_all.deb ... Unpacking intltool-debian (0.35.0+20060710.1) ... Selecting previously unselected package po-debconf. Preparing to unpack .../po-debconf_1.0.16+nmu2ubuntu1_all.deb ... Unpacking po-debconf (1.0.16+nmu2ubuntu1) ... Selecting previously unselected package apparmor-easyprof. Preparing to unpack .../apparmor-easyprof_2.8.0-0ubuntu38_all.deb ... Unpacking apparmor-easyprof (2.8.0-0ubuntu38) ... Selecting previously unselected package dh-apparmor. Preparing to unpack .../dh-apparmor_2.8.0-0ubuntu38_all.deb ... Unpacking dh-apparmor (2.8.0-0ubuntu38) ... Selecting previously unselected package debhelper. Preparing to unpack .../debhelper_9.20131127ubuntu2_all.deb ... Unpacking debhelper (9.20131127ubuntu2) ... Setting up libexpat1:ppc64el (2.1.0-4ubuntu1) ... Setting up libmagic1:ppc64el (1:5.14-2ubuntu1) ... Setting up libssl1.0.0:ppc64el (1.0.1f-1ubuntu1) ... Setting up libasprintf0c2:ppc64el (0.18.3.1-1ubuntu2) ... Setting up libglib2.0-0:ppc64el (2.39.4-0ubuntu1) ... No schema files found: doing nothing. Setting up libpipeline1:ppc64el (1.2.6-2) ... Setting up libxml2:ppc64el (2.9.1+dfsg1-3ubuntu3) ... Setting up groff-base (1.22.2-5) ... Setting up bsdmainutils (9.0.5ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up man-db (2.6.6-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcroco3:ppc64el (0.6.8-2ubuntu1) ... Setting up libmpdec2:ppc64el (2.4.0-6) ... Setting up libpython3.4-minimal:ppc64el (3.4~rc1-1build1) ... Setting up mime-support (3.54ubuntu1) ... update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode Setting up libpython3.4-stdlib:ppc64el (3.4~rc1-1build1) ... Setting up libunistring0:ppc64el (0.9.3-5ubuntu3) ... Setting up python3.4-minimal (3.4~rc1-1build1) ... Setting up python3.4 (3.4~rc1-1build1) ... Setting up python3-minimal (3.4~rc1-1) ... Setting up libpython3-stdlib:ppc64el (3.4~rc1-1) ... Setting up file (1:5.14-2ubuntu1) ... Setting up gettext-base (0.18.3.1-1ubuntu2) ... Setting up gettext (0.18.3.1-1ubuntu2) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2ubuntu1) ... Setting up dh-python (1.20140128-1ubuntu2) ... Setting up python3 (3.4~rc1-1) ... running python rtupdate hooks for python3.4... running python post-rtupdate hooks for python3.4... Setting up apparmor-easyprof (2.8.0-0ubuntu38) ... Setting up dh-apparmor (2.8.0-0ubuntu38) ... Setting up debhelper (9.20131127ubuntu2) ... Processing triggers for libc-bin (2.18-0ubuntu7) ... Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.18-0ubuntu7 make_3.81-8.2ubuntu3 dpkg-dev_1.17.5ubuntu4 gcc-4.8_4.8.2-15ubuntu3 g++-4.8_4.8.2-15ubuntu3 binutils_2.24-2ubuntu3.1 libstdc++-4.8-dev_4.8.2-15ubuntu3 libstdc++6_4.8.2-15ubuntu3 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::Quilt gpgv: Signature made Tue Apr 3 11:13:40 2012 UTC using DSA key ID C09FD35A gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./kalign_2.03+20110620-2.dsc dpkg-source: info: extracting kalign in kalign-2.03+20110620 dpkg-source: info: unpacking kalign_2.03+20110620.orig.tar.gz dpkg-source: info: unpacking kalign_2.03+20110620-2.debian.tar.gz dpkg-buildpackage: source package kalign dpkg-buildpackage: source version 1:2.03+20110620-2 dpkg-buildpackage: source distribution unstable dpkg-source --before-build kalign-2.03+20110620 dpkg-buildpackage: host architecture ppc64el dpkg-source: warning: unknown information field 'Dm-Upload-Allowed' in input data in general section of control info file /usr/bin/fakeroot debian/rules clean dh clean dh_testdir dh_auto_clean dh_clean debian/rules build-arch dh build-arch dh_testdir -a dh_auto_configure -a checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ANSI C... none needed checking how to run the C preprocessor... gcc -E checking for egrep... grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking getopt.h usability... yes checking getopt.h presence... yes checking for getopt.h... yes checking for an ANSI C-conforming const... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible realloc... yes configure: creating ./config.status config.status: creating Makefile config.status: creating config.h dh_auto_build -a make[1]: Entering directory `/build/buildd/kalign-2.03+20110620' gcc -O9 -Wall -c kalign2_distance_calculation.c gcc -O9 -Wall -c kalign2_dp.c gcc -O9 -Wall -c kalign2_input.c kalign2_input.c: In function 'get_input_into_string': kalign2_input.c:498:8: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(string,sizeof(char), i, file); ^ gcc -O9 -Wall -c kalign2_main.c gcc -O9 -Wall -c kalign2_mem.c gcc -O9 -Wall -c kalign2_inferface.c gcc -O9 -Wall -c kalign2_misc.c gcc -O9 -Wall -c kalign2_tree.c gcc -O9 -Wall -c kalign2_profile.c gcc -O9 -Wall -c kalign2_alignment_types.c gcc -O9 -Wall -c kalign2_feature.c kalign2_feature.c: In function 'feature_hirsch_align_two_pp_vector': kalign2_feature.c:436:8: warning: variable 'j' set but not used [-Wunused-but-set-variable] int i,j,c; ^ gcc -O9 -Wall -c kalign2_hirschberg.c kalign2_hirschberg.c: In function 'hirsch_align_two_ss_vector': kalign2_hirschberg.c:335:8: warning: variable 'j' set but not used [-Wunused-but-set-variable] int i,j,c; ^ kalign2_hirschberg.c: In function 'hirsch_align_two_ps_vector': kalign2_hirschberg.c:908:8: warning: variable 'j' set but not used [-Wunused-but-set-variable] int i,j,c; ^ kalign2_hirschberg.c: In function 'hirsch_align_two_pp_vector': kalign2_hirschberg.c:1501:8: warning: variable 'j' set but not used [-Wunused-but-set-variable] int i,j,c; ^ gcc -O9 -Wall -c kalign2_advanced_gaps.c kalign2_advanced_gaps.c: In function 'advanced_hirsch_align_two_pp_vector': kalign2_advanced_gaps.c:427:8: warning: variable 'j' set but not used [-Wunused-but-set-variable] int i,j,c; ^ gcc -O9 -Wall -c kalign2_hirschberg_dna.c kalign2_hirschberg_dna.c: In function 'hirsch_align_two_dna_ss_vector': kalign2_hirschberg_dna.c:327:8: warning: variable 'j' set but not used [-Wunused-but-set-variable] int i,j,c; ^ kalign2_hirschberg_dna.c: In function 'hirsch_align_two_dna_ps_vector': kalign2_hirschberg_dna.c:875:8: warning: variable 'j' set but not used [-Wunused-but-set-variable] int i,j,c; ^ kalign2_hirschberg_dna.c: In function 'hirsch_align_two_dna_pp_vector': kalign2_hirschberg_dna.c:1444:8: warning: variable 'j' set but not used [-Wunused-but-set-variable] int i,j,c; ^ gcc -O9 -Wall -c kalign2_output.c gcc -O9 -Wall -c kalign2_string_matching.c gcc -O9 -Wall -c kalign2_profile_alignment.c gcc -O9 -Wall kalign2_distance_calculation.o kalign2_dp.o kalign2_input.o kalign2_main.o kalign2_mem.o kalign2_inferface.o kalign2_misc.o kalign2_tree.o kalign2_profile.o kalign2_alignment_types.o kalign2_feature.o kalign2_hirschberg.o kalign2_advanced_gaps.o kalign2_hirschberg_dna.o kalign2_output.o kalign2_string_matching.o kalign2_profile_alignment.o -o kalign make[1]: Leaving directory `/build/buildd/kalign-2.03+20110620' dh_auto_test -a /usr/bin/fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory `/build/buildd/kalign-2.03+20110620' install -D -m u=rw,go=r debian/kalign.bash_completion /build/buildd/kalign-2.03+20110620/debian/kalign/etc/bash_completion.d/kalign make[1]: Leaving directory `/build/buildd/kalign-2.03+20110620' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_compress -a dh_fixperms -a dh_strip -a dh_strip debug symbol extraction: not enabling -a because /CurrentlyBuilding exists dh_strip debug symbol extraction: all non-arch-all packages for this build platform ppc64el: kalign dh_strip debug symbol extraction: packages to act on: kalign dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 kalign has no unstripped objects, ignoring find: `/build/buildd/kalign-2.03+20110620/debian/kalign-dbgsym': No such file or directory /usr/bin/pkg_create_dbgsym: nothing in /build/buildd/kalign-2.03+20110620/debian/kalign-dbgsym and no dbgdepends, ignoring dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: unknown information field 'Dm-Upload-Allowed' in input data in general section of control info file dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 119 pkgstriptranslations: processing kalign (in debian/kalign); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/kalign/DEBIAN/control, package kalign, directory debian/kalign pkgstripfiles: PNG optimization for package kalign took 0 s dpkg-deb: warning: 'debian/kalign/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `kalign' in `../kalign_2.03+20110620-2_ppc64el.deb'. dpkg-genchanges -B -mUbuntu Build Daemon >../kalign_2.03+20110620-2_ppc64el.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: warning: unknown information field 'Dm-Upload-Allowed' in input data in general section of control info file dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build kalign-2.03+20110620 dpkg-source: warning: unknown information field 'Dm-Upload-Allowed' in input data in general section of control info file dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20140218-2152 chroot-autobuild/build/buildd/kalign_2.03+20110620-2_ppc64el.deb: new debian package, version 2.0. size 80366 bytes: control archive=902 bytes. 30 bytes, 1 lines conffiles 856 bytes, 19 lines control 316 bytes, 5 lines md5sums Package: kalign Version: 1:2.03+20110620-2 Architecture: ppc64el Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 272 Depends: libc6 (>= 2.17) Enhances: bioperl-run, t-coffee Section: science Priority: optional Homepage: http://msa.sbc.su.se/ Description: Global and progressive multiple sequence alignment Kalign is a command line tool to perform multiple alignment of biological sequences. It employs the Muth-Manber string-matching algorithm, to improve both the accuracy and speed of the alignment. It uses global, progressive alignment approach, enriched by employing an approximate string-matching algorithm to calculate sequence distances and by incorporating local matches into the otherwise global alignment. chroot-autobuild/build/buildd/kalign_2.03+20110620-2_ppc64el.deb: drwxr-xr-x root/root 0 2014-02-18 21:52 ./ drwxr-xr-x root/root 0 2014-02-18 21:52 ./usr/ drwxr-xr-x root/root 0 2014-02-18 21:52 ./usr/bin/ -rwxr-xr-x root/root 225568 2014-02-18 21:52 ./usr/bin/kalign drwxr-xr-x root/root 0 2014-02-18 21:52 ./usr/share/ drwxr-xr-x root/root 0 2014-02-18 21:52 ./usr/share/man/ drwxr-xr-x root/root 0 2014-02-18 21:52 ./usr/share/man/man1/ -rw-r--r-- root/root 1767 2014-02-18 21:52 ./usr/share/man/man1/kalign.1.gz drwxr-xr-x root/root 0 2014-02-18 21:52 ./usr/share/doc/ drwxr-xr-x root/root 0 2014-02-18 21:52 ./usr/share/doc/kalign/ -rw-r--r-- root/root 1322 2011-06-20 10:26 ./usr/share/doc/kalign/README -rw-r--r-- root/root 1592 2012-04-03 07:10 ./usr/share/doc/kalign/copyright -rw-r--r-- root/root 1466 2012-04-03 07:12 ./usr/share/doc/kalign/changelog.Debian.gz drwxr-xr-x root/root 0 2014-02-18 21:52 ./etc/ drwxr-xr-x root/root 0 2014-02-18 21:52 ./etc/bash_completion.d/ -rw-r--r-- root/root 1392 2014-02-18 21:52 ./etc/bash_completion.d/kalign kalign_2.03+20110620-2_ppc64el.changes: Format: 1.8 Date: Thu, 29 Mar 2012 15:28:43 +0200 Source: kalign Binary: kalign Architecture: ppc64el Version: 1:2.03+20110620-2 Distribution: trusty Urgency: low Maintainer: Ubuntu Build Daemon Changed-By: Andreas Tille Description: kalign - Global and progressive multiple sequence alignment Changes: kalign (1:2.03+20110620-2) unstable; urgency=low . [ Charles Plessy ] * renamed debian/upstream-metadata.yaml to debian/upstream . [ Andreas Tille ] * debian/upstream: - Added another citation from tasks file - Fixed Homepage * debian/source/format: 3.0 (quilt) * debian/watch: Fixed hint to download URL * debian/control: - Fixed Homepage - Standards-Version: 3.9.3 (no changes needed) * debian/copyright: Fixed DEP5 issues and verified using cme fix dpkg-copyright * debhelper 9 (control+compat) Checksums-Sha1: dc94dd1f0360e37466b20c582c72679244a8058f 80366 kalign_2.03+20110620-2_ppc64el.deb Checksums-Sha256: f8fae4fbabfb1f8bad7d4c8ed9333aa007bfa7b6b2eacb6fdf05820ff7507696 80366 kalign_2.03+20110620-2_ppc64el.deb Files: 0dba67c6bc0379856027787081dc65ef 80366 science optional kalign_2.03+20110620-2_ppc64el.deb ****************************************************************************** Built successfully ****************************************************************************** Finished at 20140218-2152 Build needed 00:00:16, 1948k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-5600569'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-5600569/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-5600569'] Unmounting chroot for build PACKAGEBUILD-5600569... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-5600569'] Removing build PACKAGEBUILD-5600569