jellyfish 2.2.10-2 source package in Ubuntu
Changelog
jellyfish (2.2.10-2) unstable; urgency=medium
* debian/control: removed unused valgrind dependency
* Standards-Version: 4.3.0
* Improve reproducibilty, drop /usr/share/doc/jellyfish-
examples/examples/swig*
* Remove dependency_libs field in libjellyfish-2.0.la.
-- Michael R. Crusoe <email address hidden> Mon, 24 Dec 2018 06:46:27 -0800
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any
- Section:
- science
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section |
|---|
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| jellyfish_2.2.10-2.dsc | 2.4 KiB | 0c920745121e18936b6be40868107be5cbe77967602ab3757d2b01e4efdce45c |
| jellyfish_2.2.10.orig.tar.gz | 661.1 KiB | 49137356b1cdd014cb70e866f0739fc3fafea6421fa22cc64bcfeba55fc1dc27 |
| jellyfish_2.2.10-2.debian.tar.xz | 11.8 KiB | 164fe050a9695291d5303a764ae8f24a21fc85479d9202511b5a2aa72ebd1248 |
Available diffs
- diff from 2.2.10-1 to 2.2.10-2 (1.4 KiB)
No changes file available.
Binary packages built by this source
- jellyfish: count k-mers in DNA sequences
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
DNA. A k-mer is a substring of length k, and counting the occurrences
of all such substrings is a central step in many analyses of DNA
sequence. JELLYFISH can count k-mers using an order of magnitude less
memory and an order of magnitude faster than other k-mer counting
packages by using an efficient encoding of a hash table and by
exploiting the "compare-and-swap" CPU instruction to increase
parallelism.
.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA
files containing DNA sequences. It outputs its k-mer counts in an
binary format, which can be translated into a human-readable text
format using the "jellyfish dump" command.
- jellyfish-dbgsym: No summary available for jellyfish-dbgsym in ubuntu eoan.
No description available for jellyfish-dbgsym in ubuntu eoan.
- jellyfish-examples: No summary available for jellyfish-examples in ubuntu disco.
No description available for jellyfish-examples in ubuntu disco.
- jellyfish-examples-dbgsym: debug symbols for jellyfish-examples
- libjellyfish-2.0-2: count k-mers in DNA sequences (dynamic library of jellyfish)
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
DNA. A k-mer is a substring of length k, and counting the occurrences
of all such substrings is a central step in many analyses of DNA
sequence. JELLYFISH can count k-mers using an order of magnitude less
memory and an order of magnitude faster than other k-mer counting
packages by using an efficient encoding of a hash table and by
exploiting the "compare-and-swap" CPU instruction to increase
parallelism.
.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA
files containing DNA sequences. It outputs its k-mer counts in an
binary format, which can be translated into a human-readable text
format using the "jellyfish dump" command.
.
This package contains the dynamic library the main executable of
jellyfish is linked to.
- libjellyfish-2.0-2-dbgsym: No summary available for libjellyfish-2.0-2-dbgsym in ubuntu eoan.
No description available for libjellyfish-
2.0-2-dbgsym in ubuntu eoan.
- libjellyfish-2.0-dev: count k-mers in DNA sequences (development files of jellyfish)
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
DNA. A k-mer is a substring of length k, and counting the occurrences
of all such substrings is a central step in many analyses of DNA
sequence. JELLYFISH can count k-mers using an order of magnitude less
memory and an order of magnitude faster than other k-mer counting
packages by using an efficient encoding of a hash table and by
exploiting the "compare-and-swap" CPU instruction to increase
parallelism.
.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA
files containing DNA sequences. It outputs its k-mer counts in an
binary format, which can be translated into a human-readable text
format using the "jellyfish dump" command.
.
This package contains the development files (static library and
header files)
- libjellyfish-perl: count k-mers in DNA sequences (Perl bindings of jellyfish)
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
DNA. A k-mer is a substring of length k, and counting the occurrences
of all such substrings is a central step in many analyses of DNA
sequence. JELLYFISH can count k-mers using an order of magnitude less
memory and an order of magnitude faster than other k-mer counting
packages by using an efficient encoding of a hash table and by
exploiting the "compare-and-swap" CPU instruction to increase
parallelism.
.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA
files containing DNA sequences. It outputs its k-mer counts in an
binary format, which can be translated into a human-readable text
format using the "jellyfish dump" command.
.
This package contains the Perl bindings of jellyfish.
- libjellyfish-perl-dbgsym: No summary available for libjellyfish-perl-dbgsym in ubuntu eoan.
No description available for libjellyfish-
perl-dbgsym in ubuntu eoan.
