https://launchpad.net/ubuntu/+source/isospec/2.2.1-4.1build1/+build/27974325 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos01-s390x-012 5.4.0-173-generic #191-Ubuntu SMP Fri Feb 2 13:54:49 UTC 2024 s390x Buildd toolchain package versions: launchpad-buildd_236~650~ubuntu20.04.1 python3-lpbuildd_236~650~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.11 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1.1. Syncing the system clock with the buildd NTP service... 3 Apr 05:37:49 ntpdate[1879]: adjust time server 10.211.37.1 offset 0.000531 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=noble --arch=s390x PACKAGEBUILD-27974325 --image-type chroot /home/buildd/filecache-default/c23f799bb684944311373fdcead5a58221fa6ef7 Creating target for build PACKAGEBUILD-27974325 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=noble --arch=s390x PACKAGEBUILD-27974325 Starting target for build PACKAGEBUILD-27974325 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=noble --arch=s390x PACKAGEBUILD-27974325 'deb http://ftpmaster.internal/ubuntu noble main universe' 'deb http://ftpmaster.internal/ubuntu noble-security main universe' 'deb http://ftpmaster.internal/ubuntu noble-updates main universe' 'deb http://ftpmaster.internal/ubuntu noble-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-27974325 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=noble --arch=s390x PACKAGEBUILD-27974325 Updating target for build PACKAGEBUILD-27974325 Get:1 http://ftpmaster.internal/ubuntu noble InRelease [255 kB] Get:2 http://ftpmaster.internal/ubuntu noble-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu noble-updates InRelease [89.7 kB] Get:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] Get:5 http://ftpmaster.internal/ubuntu noble/main s390x Packages [1358 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main Translation-en [513 kB] Get:7 http://ftpmaster.internal/ubuntu noble/universe s390x Packages [14.4 MB] Get:8 http://ftpmaster.internal/ubuntu noble/universe Translation-en [6098 kB] Get:9 http://ftpmaster.internal/ubuntu noble-updates/main s390x Packages [675 kB] Get:10 http://ftpmaster.internal/ubuntu noble-updates/main Translation-en [242 kB] Get:11 http://ftpmaster.internal/ubuntu noble-updates/universe s390x Packages [4414 kB] Get:12 http://ftpmaster.internal/ubuntu noble-updates/universe Translation-en [1693 kB] Get:13 http://ftpmaster.internal/ubuntu noble-proposed/main s390x Packages [627 kB] Get:14 http://ftpmaster.internal/ubuntu noble-proposed/main Translation-en [228 kB] Get:15 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x Packages [3581 kB] Get:16 http://ftpmaster.internal/ubuntu noble-proposed/universe Translation-en [1590 kB] Fetched 36.0 MB in 21s (1687 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libnsl-dev libperl5.36 libtirpc-dev libunistring2 perl-modules-5.36 Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: libapt-pkg6.0* libdb5.3* libext2fs2* libgdbm-compat4* libgdbm6* libgnutls30* libhogweed6* libnettle8* libnpth0* libpng16-16* libreadline8* libssl3* libtirpc3* usrmerge* The following NEW packages will be installed: cpp-13-s390x-linux-gnu cpp-s390x-linux-gnu g++-13-s390x-linux-gnu g++-s390x-linux-gnu gcc-13-s390x-linux-gnu gcc-14-base gcc-s390x-linux-gnu libapt-pkg6.0t64 libdb5.3t64 libext2fs2t64 libgdbm-compat4t64 libgdbm6t64 libgnutls30t64 libhogweed6t64 libnettle8t64 libnpth0t64 libperl5.38t64 libpng16-16t64 libreadline8t64 libssl3t64 libtirpc3t64 libunistring5 perl-modules-5.38 The following packages will be upgraded: apt apt-utils base-files base-passwd bash bash-completion binutils binutils-common binutils-s390x-linux-gnu bsdextrautils bsdutils bzip2 ca-certificates coreutils cpp cpp-13 dash debconf debconf-i18n debianutils diffutils dpkg dpkg-dev e2fsprogs fakeroot g++ g++-13 gcc gcc-13 gcc-13-base gpg gpg-agent gpgconf gpgv grep gzip hostname init init-system-helpers krb5-locales libacl1 libapparmor1 libargon2-1 libasan8 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libfakeroot libfdisk1 libffi8 libgcc-13-dev libgcc-s1 libgcrypt20 libgomp1 libgpg-error-l10n libgpg-error0 libgpm2 libgssapi-krb5-2 libidn2-0 libip4tc2 libitm1 libjansson4 libk5crypto3 libkeyutils1 libkmod2 libkrb5-3 libkrb5support0 liblocale-gettext-perl liblzma5 libmd0 libmount1 libncursesw6 libnsl-dev libnsl2 libnss-nisplus libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libproc2-0 libseccomp2 libselinux1 libsemanage-common libsemanage2 libsepol2 libsframe1 libsmartcols1 libsqlite3-0 libss2 libstdc++-13-dev libstdc++6 libsystemd-shared libsystemd0 libtext-charwidth-perl libtext-iconv-perl libtinfo6 libtirpc-common libtirpc-dev libubsan1 libudev1 libuuid1 libxxhash0 libzstd1 linux-libc-dev login logsave lto-disabled-list mawk mount ncurses-base ncurses-bin openssl optipng passwd perl perl-base pinentry-curses procps psmisc readline-common sed sensible-utils systemd systemd-dev systemd-sysv sysvinit-utils tar tzdata ubuntu-keyring util-linux uuid-runtime xz-utils zlib1g 155 upgraded, 23 newly installed, 14 to remove and 0 not upgraded. Need to get 105 MB of archives. After this operation, 76.0 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libnsl-dev s390x 1.3.0-3build3 [73.1 kB] Get:2 http://ftpmaster.internal/ubuntu noble/main s390x libcrypt-dev s390x 1:4.4.36-4 [135 kB] Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libc6-dev s390x 2.39-0ubuntu8 [1629 kB] Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libc-dev-bin s390x 2.39-0ubuntu8 [20.2 kB] Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libtirpc-common all 1.3.4+ds-1.1build1 [8094 B] Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libtirpc-dev s390x 1.3.4+ds-1.1build1 [197 kB] Get:7 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x libnss-nisplus s390x 1.3-5build1 [23.8 kB] Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libtirpc3t64 s390x 1.3.4+ds-1.1build1 [85.9 kB] Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libgssapi-krb5-2 s390x 1.20.1-6ubuntu2 [149 kB] Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libkrb5-3 s390x 1.20.1-6ubuntu2 [360 kB] Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libk5crypto3 s390x 1.20.1-6ubuntu2 [90.3 kB] Get:12 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libkrb5support0 s390x 1.20.1-6ubuntu2 [34.7 kB] Get:13 http://ftpmaster.internal/ubuntu noble/main s390x libacl1 s390x 2.3.2-1 [18.0 kB] Get:14 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libapparmor1 s390x 4.0.0-beta3-0ubuntu3 [50.8 kB] Get:15 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libaudit-common all 1:3.1.2-2.1build1 [5736 B] Get:16 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libcap-ng0 s390x 0.8.4-2build2 [15.8 kB] Get:17 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libaudit1 s390x 1:3.1.2-2.1build1 [48.9 kB] Get:18 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libblkid1 s390x 2.39.3-9ubuntu4 [128 kB] Get:19 http://ftpmaster.internal/ubuntu noble/main s390x libcap2 s390x 1:2.66-5ubuntu1 [31.7 kB] Get:20 http://ftpmaster.internal/ubuntu noble/main s390x libcrypt1 s390x 1:4.4.36-4 [102 kB] Get:21 http://ftpmaster.internal/ubuntu noble/main s390x libgpg-error-l10n all 1.47-3build1 [8024 B] Get:22 http://ftpmaster.internal/ubuntu noble/main s390x libgpg-error0 s390x 1.47-3build1 [75.6 kB] Get:23 http://ftpmaster.internal/ubuntu noble/main s390x libgcrypt20 s390x 1.10.3-2 [499 kB] Get:24 http://ftpmaster.internal/ubuntu noble/main s390x liblzma5 s390x 5.6.1+really5.4.5-1 [135 kB] Get:25 http://ftpmaster.internal/ubuntu noble/main s390x libzstd1 s390x 1.5.5+dfsg2-2 [336 kB] Get:26 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libkmod2 s390x 31+20240202-2ubuntu5 [56.3 kB] Get:27 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-8-0 s390x 10.42-4ubuntu1 [243 kB] Get:28 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libselinux1 s390x 3.5-2ubuntu2 [84.8 kB] Get:29 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libmount1 s390x 2.39.3-9ubuntu4 [138 kB] Get:30 http://ftpmaster.internal/ubuntu noble-proposed/main s390x perl-modules-5.38 all 5.38.2-3.2build1 [3110 kB] Get:31 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libdb5.3t64 s390x 5.3.28+dfsg2-6build1 [763 kB] Get:32 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libgdbm6t64 s390x 1.23-5.1build1 [36.5 kB] Get:33 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libgdbm-compat4t64 s390x 1.23-5.1build1 [6890 B] Get:34 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libperl5.38t64 s390x 5.38.2-3.2build1 [5008 kB] Get:35 http://ftpmaster.internal/ubuntu noble-proposed/main s390x perl s390x 5.38.2-3.2build1 [231 kB] Get:36 http://ftpmaster.internal/ubuntu noble-proposed/main s390x perl-base s390x 5.38.2-3.2build1 [1968 kB] Get:37 http://ftpmaster.internal/ubuntu noble-proposed/main s390x liblocale-gettext-perl s390x 1.07-6ubuntu5 [15.8 kB] Get:38 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libtext-iconv-perl s390x 1.7-8build3 [13.8 kB] Get:39 http://ftpmaster.internal/ubuntu noble/main s390x libtext-charwidth-perl s390x 0.04-11build3 [9518 B] Get:40 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libc6 s390x 2.39-0ubuntu8 [2847 kB] Get:41 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libc-bin s390x 2.39-0ubuntu8 [654 kB] Get:42 http://ftpmaster.internal/ubuntu noble-proposed/main s390x openssl s390x 3.0.13-0ubuntu3 [1009 kB] Get:43 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libsystemd-shared s390x 255.4-1ubuntu6 [2131 kB] Get:44 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libcryptsetup12 s390x 2:2.7.0-1ubuntu3 [264 kB] Get:45 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libssl3t64 s390x 3.0.13-0ubuntu3 [1675 kB] Get:46 http://ftpmaster.internal/ubuntu noble-proposed/main s390x systemd-dev all 255.4-1ubuntu6 [104 kB] Get:47 http://ftpmaster.internal/ubuntu noble-proposed/main s390x systemd-sysv s390x 255.4-1ubuntu6 [11.9 kB] Get:48 http://ftpmaster.internal/ubuntu noble-proposed/main s390x systemd s390x 255.4-1ubuntu6 [3533 kB] Get:49 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libsystemd0 s390x 255.4-1ubuntu6 [443 kB] Get:50 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libpam-modules-bin s390x 1.5.3-5ubuntu4 [57.2 kB] Get:51 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libpam-modules s390x 1.5.3-5ubuntu4 [289 kB] Get:52 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libnettle8t64 s390x 3.9.1-2.2build1 [210 kB] Get:53 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libhogweed6t64 s390x 3.9.1-2.2build1 [204 kB] Get:54 http://ftpmaster.internal/ubuntu noble/main s390x libp11-kit0 s390x 0.25.3-4ubuntu1 [318 kB] Get:55 http://ftpmaster.internal/ubuntu noble/main s390x libunistring5 s390x 1.1-2 [544 kB] Get:56 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libgnutls30t64 s390x 3.8.3-1.1ubuntu3 [944 kB] Get:57 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libapt-pkg6.0t64 s390x 2.7.14build2 [1014 kB] Get:58 http://ftpmaster.internal/ubuntu noble-proposed/main s390x bzip2 s390x 1.0.8-5.1 [35.5 kB] Get:59 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libbz2-1.0 s390x 1.0.8-5.1 [40.0 kB] Get:60 http://ftpmaster.internal/ubuntu noble/main s390x gcc-14-base s390x 14-20240330-1ubuntu2 [47.4 kB] Get:61 http://ftpmaster.internal/ubuntu noble/main s390x libgcc-s1 s390x 14-20240330-1ubuntu2 [35.9 kB] Get:62 http://ftpmaster.internal/ubuntu noble/main s390x libstdc++6 s390x 14-20240330-1ubuntu2 [905 kB] Get:63 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libudev1 s390x 255.4-1ubuntu6 [178 kB] Get:64 http://ftpmaster.internal/ubuntu noble/main s390x libxxhash0 s390x 0.8.2-2 [23.6 kB] Get:65 http://ftpmaster.internal/ubuntu noble-proposed/main s390x zlib1g s390x 1:1.3.dfsg-3.1ubuntu2 [75.9 kB] Get:66 http://ftpmaster.internal/ubuntu noble/main s390x libffi8 s390x 3.4.6-1 [23.0 kB] Get:67 http://ftpmaster.internal/ubuntu noble/main s390x libidn2-0 s390x 2.3.7-2 [67.2 kB] Get:68 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libdebconfclient0 s390x 0.271ubuntu3 [11.4 kB] Get:69 http://ftpmaster.internal/ubuntu noble/main s390x base-passwd s390x 3.6.3 [51.1 kB] Get:70 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libsqlite3-0 s390x 3.45.1-1ubuntu2 [747 kB] Get:71 http://ftpmaster.internal/ubuntu noble-proposed/main s390x gpg s390x 2.4.4-2ubuntu16 [589 kB] Get:72 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libreadline8t64 s390x 8.2-4build1 [171 kB] Get:73 http://ftpmaster.internal/ubuntu noble-proposed/main s390x readline-common all 8.2-4build1 [56.5 kB] Get:74 http://ftpmaster.internal/ubuntu noble/main s390x libncursesw6 s390x 6.4+20240113-1ubuntu1 [161 kB] Get:75 http://ftpmaster.internal/ubuntu noble/main s390x libtinfo6 s390x 6.4+20240113-1ubuntu1 [117 kB] Get:76 http://ftpmaster.internal/ubuntu noble-proposed/main s390x gpg-agent s390x 2.4.4-2ubuntu16 [240 kB] Get:77 http://ftpmaster.internal/ubuntu noble-proposed/main s390x gpgconf s390x 2.4.4-2ubuntu16 [111 kB] Get:78 http://ftpmaster.internal/ubuntu noble-proposed/main s390x pinentry-curses s390x 1.2.1-3ubuntu5 [37.6 kB] Get:79 http://ftpmaster.internal/ubuntu noble/main s390x init-system-helpers all 1.66ubuntu1 [39.4 kB] Get:80 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libnpth0t64 s390x 1.6-3.1build1 [8204 B] Get:81 http://ftpmaster.internal/ubuntu noble-proposed/main s390x gpgv s390x 2.4.4-2ubuntu16 [165 kB] Get:82 http://ftpmaster.internal/ubuntu noble/main s390x ubuntu-keyring all 2023.11.28.1 [11.1 kB] Get:83 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libseccomp2 s390x 2.5.5-1ubuntu3 [53.4 kB] Get:84 http://ftpmaster.internal/ubuntu noble-proposed/main s390x apt-utils s390x 2.7.14build2 [214 kB] Get:85 http://ftpmaster.internal/ubuntu noble-proposed/main s390x apt s390x 2.7.14build2 [1390 kB] Get:86 http://ftpmaster.internal/ubuntu noble/main s390x debconf-i18n all 1.5.86 [205 kB] Get:87 http://ftpmaster.internal/ubuntu noble/main s390x debconf all 1.5.86 [124 kB] Get:88 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libpam0g s390x 1.5.3-5ubuntu4 [69.7 kB] Get:89 http://ftpmaster.internal/ubuntu noble/main s390x libargon2-1 s390x 0~20190702+dfsg-4 [53.1 kB] Get:90 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libdevmapper1.02.1 s390x 2:1.02.185-3ubuntu3 [142 kB] Get:91 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libuuid1 s390x 2.39.3-9ubuntu4 [35.8 kB] Get:92 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libfdisk1 s390x 2.39.3-9ubuntu4 [151 kB] Get:93 http://ftpmaster.internal/ubuntu noble-proposed/main s390x mount s390x 2.39.3-9ubuntu4 [119 kB] Get:94 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libcom-err2 s390x 1.47.0-2.4~exp1ubuntu3 [22.9 kB] Get:95 http://ftpmaster.internal/ubuntu noble/main s390x libkeyutils1 s390x 1.6.3-3 [9448 B] Get:96 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libnsl2 s390x 1.3.0-3build3 [44.1 kB] Get:97 http://ftpmaster.internal/ubuntu noble/main s390x linux-libc-dev s390x 6.8.0-20.20 [1592 kB] Get:98 http://ftpmaster.internal/ubuntu noble-proposed/main s390x base-files s390x 13ubuntu9 [73.7 kB] Get:99 http://ftpmaster.internal/ubuntu noble-proposed/main s390x debianutils s390x 5.17build1 [90.2 kB] Get:100 http://ftpmaster.internal/ubuntu noble-proposed/main s390x bash s390x 5.2.21-2ubuntu4 [845 kB] Get:101 http://ftpmaster.internal/ubuntu noble-proposed/main s390x bsdutils s390x 1:2.39.3-9ubuntu4 [96.3 kB] Get:102 http://ftpmaster.internal/ubuntu noble-proposed/main s390x coreutils s390x 9.4-3ubuntu5 [1482 kB] Get:103 http://ftpmaster.internal/ubuntu noble/main s390x tar s390x 1.35+dfsg-3 [269 kB] Get:104 http://ftpmaster.internal/ubuntu noble-proposed/main s390x dpkg s390x 1.22.6ubuntu6 [1278 kB] Get:105 http://ftpmaster.internal/ubuntu noble/main s390x dash s390x 0.5.12-6ubuntu5 [95.0 kB] Get:106 http://ftpmaster.internal/ubuntu noble/main s390x diffutils s390x 1:3.10-1 [187 kB] Get:107 http://ftpmaster.internal/ubuntu noble/main s390x grep s390x 3.11-4 [189 kB] Get:108 http://ftpmaster.internal/ubuntu noble/main s390x gzip s390x 1.12-1ubuntu2 [106 kB] Get:109 http://ftpmaster.internal/ubuntu noble/main s390x hostname s390x 3.23+nmu2ubuntu1 [11.1 kB] Get:110 http://ftpmaster.internal/ubuntu noble/main s390x login s390x 1:4.13+dfsg1-4ubuntu1 [202 kB] Get:111 http://ftpmaster.internal/ubuntu noble/main s390x ncurses-bin s390x 6.4+20240113-1ubuntu1 [198 kB] Get:112 http://ftpmaster.internal/ubuntu noble/main s390x sed s390x 4.9-2 [207 kB] Get:113 http://ftpmaster.internal/ubuntu noble-proposed/main s390x util-linux s390x 2.39.3-9ubuntu4 [1142 kB] Get:114 http://ftpmaster.internal/ubuntu noble/main s390x ncurses-base all 6.4+20240113-1ubuntu1 [25.4 kB] Get:115 http://ftpmaster.internal/ubuntu noble/main s390x sysvinit-utils s390x 3.08-6ubuntu2 [34.7 kB] Get:116 http://ftpmaster.internal/ubuntu noble-proposed/main s390x logsave s390x 1.47.0-2.4~exp1ubuntu3 [22.6 kB] Get:117 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libext2fs2t64 s390x 1.47.0-2.4~exp1ubuntu3 [234 kB] Get:118 http://ftpmaster.internal/ubuntu noble-proposed/main s390x e2fsprogs s390x 1.47.0-2.4~exp1ubuntu3 [615 kB] Get:119 http://ftpmaster.internal/ubuntu noble-proposed/main s390x optipng s390x 0.7.8+ds-1build2 [114 kB] Get:120 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libpng16-16t64 s390x 1.6.43-5build1 [200 kB] Get:121 http://ftpmaster.internal/ubuntu noble/main s390x init s390x 1.66ubuntu1 [6188 B] Get:122 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libsmartcols1 s390x 2.39.3-9ubuntu4 [68.1 kB] Get:123 http://ftpmaster.internal/ubuntu noble-proposed/main s390x uuid-runtime s390x 2.39.3-9ubuntu4 [33.4 kB] Get:124 http://ftpmaster.internal/ubuntu noble/main s390x libattr1 s390x 1:2.5.2-1 [11.7 kB] Get:125 http://ftpmaster.internal/ubuntu noble/main s390x libmd0 s390x 1.1.0-2 [24.7 kB] Get:126 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libpam-runtime all 1.5.3-5ubuntu4 [40.8 kB] Get:127 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libsemanage-common all 3.5-1build5 [10.1 kB] Get:128 http://ftpmaster.internal/ubuntu noble/main s390x libsepol2 s390x 3.5-2 [308 kB] Get:129 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libsemanage2 s390x 3.5-1build5 [96.8 kB] Get:130 http://ftpmaster.internal/ubuntu noble/main s390x passwd s390x 1:4.13+dfsg1-4ubuntu1 [857 kB] Get:131 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libproc2-0 s390x 2:4.0.4-4ubuntu3 [59.8 kB] Get:132 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libss2 s390x 1.47.0-2.4~exp1ubuntu3 [17.2 kB] Get:133 http://ftpmaster.internal/ubuntu noble/main s390x mawk s390x 1.3.4.20240123-1 [133 kB] Get:134 http://ftpmaster.internal/ubuntu noble-proposed/main s390x procps s390x 2:4.0.4-4ubuntu3 [724 kB] Get:135 http://ftpmaster.internal/ubuntu noble/main s390x sensible-utils all 0.0.22 [22.5 kB] Get:136 http://ftpmaster.internal/ubuntu noble/main s390x ca-certificates all 20240203 [159 kB] Get:137 http://ftpmaster.internal/ubuntu noble-proposed/main s390x krb5-locales all 1.20.1-6ubuntu2 [13.8 kB] Get:138 http://ftpmaster.internal/ubuntu noble/main s390x tzdata all 2024a-1ubuntu1 [273 kB] Get:139 http://ftpmaster.internal/ubuntu noble/main s390x bash-completion all 1:2.11-8 [180 kB] Get:140 http://ftpmaster.internal/ubuntu noble-proposed/main s390x bsdextrautils s390x 2.39.3-9ubuntu4 [76.3 kB] Get:141 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libgpm2 s390x 1.20.7-11 [14.7 kB] Get:142 http://ftpmaster.internal/ubuntu noble/main s390x libip4tc2 s390x 1.8.10-3ubuntu1 [24.2 kB] Get:143 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libjansson4 s390x 2.14-2build2 [33.2 kB] Get:144 http://ftpmaster.internal/ubuntu noble-proposed/main s390x psmisc s390x 23.7-1build1 [178 kB] Get:145 http://ftpmaster.internal/ubuntu noble/main s390x xz-utils s390x 5.6.1+really5.4.5-1 [269 kB] Get:146 http://ftpmaster.internal/ubuntu noble/main s390x libctf0 s390x 2.42-4ubuntu2 [98.4 kB] Get:147 http://ftpmaster.internal/ubuntu noble/main s390x libctf-nobfd0 s390x 2.42-4ubuntu2 [100 kB] Get:148 http://ftpmaster.internal/ubuntu noble/main s390x binutils-s390x-linux-gnu s390x 2.42-4ubuntu2 [2270 kB] Get:149 http://ftpmaster.internal/ubuntu noble/main s390x libbinutils s390x 2.42-4ubuntu2 [479 kB] Get:150 http://ftpmaster.internal/ubuntu noble/main s390x binutils s390x 2.42-4ubuntu2 [3042 B] Get:151 http://ftpmaster.internal/ubuntu noble/main s390x binutils-common s390x 2.42-4ubuntu2 [217 kB] Get:152 http://ftpmaster.internal/ubuntu noble/main s390x libsframe1 s390x 2.42-4ubuntu2 [14.2 kB] Get:153 http://ftpmaster.internal/ubuntu noble/main s390x libubsan1 s390x 14-20240330-1ubuntu2 [1186 kB] Get:154 http://ftpmaster.internal/ubuntu noble/main s390x libgomp1 s390x 14-20240330-1ubuntu2 [151 kB] Get:155 http://ftpmaster.internal/ubuntu noble/main s390x libitm1 s390x 14-20240330-1ubuntu2 [31.1 kB] Get:156 http://ftpmaster.internal/ubuntu noble/main s390x libatomic1 s390x 14-20240330-1ubuntu2 [9386 B] Get:157 http://ftpmaster.internal/ubuntu noble/main s390x libasan8 s390x 14-20240330-1ubuntu2 [2994 kB] Get:158 http://ftpmaster.internal/ubuntu noble-proposed/main s390x g++-13 s390x 13.2.0-23ubuntu3 [14.5 kB] Get:159 http://ftpmaster.internal/ubuntu noble-proposed/main s390x gcc-13 s390x 13.2.0-23ubuntu3 [469 kB] Get:160 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libstdc++-13-dev s390x 13.2.0-23ubuntu3 [2494 kB] Get:161 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libgcc-13-dev s390x 13.2.0-23ubuntu3 [1003 kB] Get:162 http://ftpmaster.internal/ubuntu noble/main s390x libcc1-0 s390x 14-20240330-1ubuntu2 [49.8 kB] Get:163 http://ftpmaster.internal/ubuntu noble-proposed/main s390x cpp-13 s390x 13.2.0-23ubuntu3 [1026 B] Get:164 http://ftpmaster.internal/ubuntu noble-proposed/main s390x gcc-13-base s390x 13.2.0-23ubuntu3 [48.6 kB] Get:165 http://ftpmaster.internal/ubuntu noble-proposed/main s390x gcc-13-s390x-linux-gnu s390x 13.2.0-23ubuntu3 [19.1 MB] Get:166 http://ftpmaster.internal/ubuntu noble-proposed/main s390x g++-13-s390x-linux-gnu s390x 13.2.0-23ubuntu3 [11.3 MB] Get:167 http://ftpmaster.internal/ubuntu noble-proposed/main s390x cpp-13-s390x-linux-gnu s390x 13.2.0-23ubuntu3 [9936 kB] Get:168 http://ftpmaster.internal/ubuntu noble/main s390x g++ s390x 4:13.2.0-7ubuntu1 [1096 B] Get:169 http://ftpmaster.internal/ubuntu noble/main s390x gcc s390x 4:13.2.0-7ubuntu1 [5014 B] Get:170 http://ftpmaster.internal/ubuntu noble/main s390x cpp s390x 4:13.2.0-7ubuntu1 [22.4 kB] Get:171 http://ftpmaster.internal/ubuntu noble/main s390x cpp-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [5308 B] Get:172 http://ftpmaster.internal/ubuntu noble/main s390x gcc-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [1208 B] Get:173 http://ftpmaster.internal/ubuntu noble/main s390x g++-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [956 B] Get:174 http://ftpmaster.internal/ubuntu noble-proposed/main s390x dpkg-dev all 1.22.6ubuntu6 [1074 kB] Get:175 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libdpkg-perl all 1.22.6ubuntu6 [268 kB] Get:176 http://ftpmaster.internal/ubuntu noble/main s390x lto-disabled-list all 47 [12.4 kB] Get:177 http://ftpmaster.internal/ubuntu noble/main s390x libfakeroot s390x 1.33-1 [31.9 kB] Get:178 http://ftpmaster.internal/ubuntu noble/main s390x fakeroot s390x 1.33-1 [67.5 kB] Preconfiguring packages ... Fetched 105 MB in 9s (11.6 MB/s) (Reading database ... 13395 files and directories currently installed.) Preparing to unpack .../0-libnsl-dev_1.3.0-3build3_s390x.deb ... Unpacking libnsl-dev:s390x (1.3.0-3build3) over (1.3.0-2build2) ... Preparing to unpack .../1-libcrypt-dev_1%3a4.4.36-4_s390x.deb ... Unpacking libcrypt-dev:s390x (1:4.4.36-4) over (1:4.4.36-2) ... Preparing to unpack .../2-libc6-dev_2.39-0ubuntu8_s390x.deb ... Unpacking libc6-dev:s390x (2.39-0ubuntu8) over (2.38-1ubuntu6) ... Preparing to unpack .../3-libc-dev-bin_2.39-0ubuntu8_s390x.deb ... Unpacking libc-dev-bin (2.39-0ubuntu8) over (2.38-1ubuntu6) ... Preparing to unpack .../4-libtirpc-common_1.3.4+ds-1.1build1_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.1build1) over (1.3.3+ds-1) ... Preparing to unpack .../5-libtirpc-dev_1.3.4+ds-1.1build1_s390x.deb ... Unpacking libtirpc-dev:s390x (1.3.4+ds-1.1build1) over (1.3.3+ds-1) ... Preparing to unpack .../6-libnss-nisplus_1.3-5build1_s390x.deb ... 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Unpacking systemd (255.4-1ubuntu6) over (253.5-1ubuntu6) ... dpkg: warning: unable to delete old directory '/lib/systemd/system-preset': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system-generators': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/user@0.service.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/user@.service.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/user-.slice.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/timers.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/systemd-localed.service.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/sysinit.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/sockets.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/rescue.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/rc-local.service.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/multi-user.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/initrd-root-fs.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/initrd-root-device.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/graphical.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/getty.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/network': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/journald.conf.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/modprobe.d': Directory not empty Preparing to unpack .../libsystemd0_255.4-1ubuntu6_s390x.deb ... 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Unpacking lto-disabled-list (47) over (43) ... Preparing to unpack .../46-libfakeroot_1.33-1_s390x.deb ... Unpacking libfakeroot:s390x (1.33-1) over (1.32.1-1) ... Preparing to unpack .../47-fakeroot_1.33-1_s390x.deb ... Unpacking fakeroot (1.33-1) over (1.32.1-1) ... Setting up libip4tc2:s390x (1.8.10-3ubuntu1) ... Setting up libtext-iconv-perl:s390x (1.7-8build3) ... Setting up libtext-charwidth-perl:s390x (0.04-11build3) ... Setting up libkeyutils1:s390x (1.6.3-3) ... Setting up lto-disabled-list (47) ... Setting up libgpm2:s390x (1.20.7-11) ... Setting up libgdbm6t64:s390x (1.23-5.1build1) ... Setting up bsdextrautils (2.39.3-9ubuntu4) ... Setting up init (1.66ubuntu1) ... Setting up libgdbm-compat4t64:s390x (1.23-5.1build1) ... Setting up psmisc (23.7-1build1) ... Setting up libtirpc-common (1.3.4+ds-1.1build1) ... Setting up libsqlite3-0:s390x (3.45.1-1ubuntu2) ... Setting up binutils-common:s390x (2.42-4ubuntu2) ... Setting up linux-libc-dev:s390x (6.8.0-20.20) ... Setting up libctf-nobfd0:s390x (2.42-4ubuntu2) ... Setting up krb5-locales (1.20.1-6ubuntu2) ... Setting up libgomp1:s390x (14-20240330-1ubuntu2) ... Setting up bzip2 (1.0.8-5.1) ... Setting up libsframe1:s390x (2.42-4ubuntu2) ... Setting up libfakeroot:s390x (1.33-1) ... Setting up libjansson4:s390x (2.14-2build2) ... Setting up libkrb5support0:s390x (1.20.1-6ubuntu2) ... Setting up tzdata (2024a-1ubuntu1) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Apr 3 05:38:45 UTC 2024. Universal Time is now: Wed Apr 3 05:38:45 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up fakeroot (1.33-1) ... Setting up gcc-13-base:s390x (13.2.0-23ubuntu3) ... Setting up cpp-13-s390x-linux-gnu (13.2.0-23ubuntu3) ... Setting up bash-completion (1:2.11-8) ... Setting up xz-utils (5.6.1+really5.4.5-1) ... Setting up perl-modules-5.38 (5.38.2-3.2build1) ... Setting up libproc2-0:s390x (2:4.0.4-4ubuntu3) ... Setting up libpng16-16t64:s390x (1.6.43-5build1) ... Setting up libatomic1:s390x (14-20240330-1ubuntu2) ... Setting up libss2:s390x (1.47.0-2.4~exp1ubuntu3) ... Setting up libncursesw6:s390x (6.4+20240113-1ubuntu1) ... Setting up libk5crypto3:s390x (1.20.1-6ubuntu2) ... Setting up logsave (1.47.0-2.4~exp1ubuntu3) ... Setting up libdb5.3t64:s390x (5.3.28+dfsg2-6build1) ... Setting up libubsan1:s390x (14-20240330-1ubuntu2) ... Setting up sensible-utils (0.0.22) ... Setting up uuid-runtime (2.39.3-9ubuntu4) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of restart. Setting up libcrypt-dev:s390x (1:4.4.36-4) ... Setting up libasan8:s390x (14-20240330-1ubuntu2) ... Setting up procps (2:4.0.4-4ubuntu3) ... Installing new version of config file /etc/sysctl.conf ... Setting up mawk (1.3.4.20240123-1) ... Setting up libkrb5-3:s390x (1.20.1-6ubuntu2) ... Setting up libperl5.38t64:s390x (5.38.2-3.2build1) ... Setting up libbinutils:s390x (2.42-4ubuntu2) ... Setting up libc-dev-bin (2.39-0ubuntu8) ... Setting up openssl (3.0.13-0ubuntu3) ... Setting up libgpg-error-l10n (1.47-3build1) ... Setting up readline-common (8.2-4build1) ... Setting up libcc1-0:s390x (14-20240330-1ubuntu2) ... Setting up liblocale-gettext-perl (1.07-6ubuntu5) ... Setting up libitm1:s390x (14-20240330-1ubuntu2) ... Setting up libctf0:s390x (2.42-4ubuntu2) ... Setting up pinentry-curses (1.2.1-3ubuntu5) ... Setting up apt-utils (2.7.14build2) ... Setting up binutils-s390x-linux-gnu (2.42-4ubuntu2) ... Setting up cpp-13 (13.2.0-23ubuntu3) ... Setting up cpp-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... Setting up debconf-i18n (1.5.86) ... Setting up e2fsprogs (1.47.0-2.4~exp1ubuntu3) ... Setting up binutils (2.42-4ubuntu2) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... rehash: warning: skipping ca-certificates.crt,it does not contain exactly one certificate or CRL 14 added, 5 removed; done. Setting up perl (5.38.2-3.2build1) ... Setting up optipng (0.7.8+ds-1build2) ... Setting up libgssapi-krb5-2:s390x (1.20.1-6ubuntu2) ... Setting up libdpkg-perl (1.22.6ubuntu6) ... Setting up libreadline8t64:s390x (8.2-4build1) ... Setting up libgcc-13-dev:s390x (13.2.0-23ubuntu3) ... Setting up cpp (4:13.2.0-7ubuntu1) ... Setting up gpgconf (2.4.4-2ubuntu16) ... Setting up libc6-dev:s390x (2.39-0ubuntu8) ... Setting up gpg (2.4.4-2ubuntu16) ... Setting up libstdc++-13-dev:s390x (13.2.0-23ubuntu3) ... Setting up gpg-agent (2.4.4-2ubuntu16) ... Setting up libtirpc3t64:s390x (1.3.4+ds-1.1build1) ... Setting up dpkg-dev (1.22.6ubuntu6) ... Setting up libtirpc-dev:s390x (1.3.4+ds-1.1build1) ... Setting up gcc-13-s390x-linux-gnu (13.2.0-23ubuntu3) ... Setting up gcc-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... Setting up g++-13-s390x-linux-gnu (13.2.0-23ubuntu3) ... Setting up gcc-13 (13.2.0-23ubuntu3) ... Setting up libnsl2:s390x (1.3.0-3build3) ... Setting up g++-13 (13.2.0-23ubuntu3) ... Setting up g++-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... Setting up libnss-nisplus:s390x (1.3-5build1) ... Setting up gcc (4:13.2.0-7ubuntu1) ... Setting up g++ (4:13.2.0-7ubuntu1) ... Setting up libnsl-dev:s390x (1.3.0-3build3) ... Processing triggers for libc-bin (2.39-0ubuntu8) ... Processing triggers for debianutils (5.17build1) ... (Reading database ... 15548 files and directories currently installed.) Purging configuration files for libssl3:s390x (3.0.10-1ubuntu2) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-27974325 s390x noble-proposed -c chroot:build-PACKAGEBUILD-27974325 --arch=s390x --dist=noble-proposed --nolog isospec_2.2.1-4.1build1.dsc Initiating build PACKAGEBUILD-27974325 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-173-generic #191-Ubuntu SMP Fri Feb 2 13:54:49 UTC 2024 s390x sbuild (Debian sbuild) 0.79.0 (05 February 2020) on bos01-s390x-012.buildd +==============================================================================+ | isospec 2.2.1-4.1build1 (s390x) Wed, 03 Apr 2024 05:38:50 +0000 | +==============================================================================+ Package: isospec Version: 2.2.1-4.1build1 Source Version: 2.2.1-4.1build1 Distribution: noble-proposed Machine Architecture: s390x Host Architecture: s390x Build Architecture: s390x Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-27974325/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/isospec-fGSO1O/resolver-E5N7de' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- isospec_2.2.1-4.1build1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/isospec-fGSO1O/isospec-2.2.1' with '<>' I: NOTICE: Log filtering will replace 'build/isospec-fGSO1O' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), dh-exec, graphicsmagick-imagemagick-compat, cmake, d-shlibs, dh-python, python3-dev, python3-setuptools, python3-cffi, texlive-latex-base, texlive-latex-recommended, texlive-latex-extra, texlive-plain-generic, texlive-fonts-recommended, texlive-font-utils, ghostscript, doxygen, libjs-mathjax, build-essential, fakeroot Filtered Build-Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), dh-exec, graphicsmagick-imagemagick-compat, cmake, d-shlibs, dh-python, python3-dev, python3-setuptools, python3-cffi, texlive-latex-base, texlive-latex-recommended, texlive-latex-extra, texlive-plain-generic, texlive-fonts-recommended, texlive-font-utils, ghostscript, doxygen, libjs-mathjax, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [517 B] Get:5 copy:/<>/apt_archive ./ Packages [602 B] Fetched 2076 B in 0s (158 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: apt-utils bash-completion ca-certificates debconf-i18n krb5-locales libgpg-error-l10n libgpm2 libip4tc2 liblocale-gettext-perl libnsl-dev libnsl2 libnss-nis libnss-nisplus libperl5.36 libtext-charwidth-perl libtext-iconv-perl libtext-wrapi18n-perl libtirpc-common libtirpc-dev libtirpc3t64 libunistring2 openssl perl-modules-5.36 psmisc uuid-runtime Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev cmake cmake-data d-shlibs debhelper debugedit dh-autoreconf dh-exec dh-python dh-strip-nondeterminism doxygen dwz file fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lmodern fonts-mathjax fonts-urw-base35 gettext gettext-base ghostscript graphicsmagick graphicsmagick-imagemagick-compat groff-base intltool-debian libapache-pom-java libarchive-zip-perl libarchive13t64 libavahi-client3 libavahi-common-data libavahi-common3 libbrotli1 libbsd0 libcairo2 libclang-cpp18 libclang1-18 libcommons-logging-java libcommons-parent-java libcups2t64 libcurl4t64 libdav1d7 libdbus-1-3 libde265-0 libdebhelper-perl libdeflate0 libdw1t64 libedit2 libelf1t64 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfmt9 libfontbox-java libfontconfig1 libfontenc1 libfreetype6 libglib2.0-0t64 libgraphicsmagick-q16-3t64 libgraphite2-3 libgs-common libgs10 libgs10-common libharfbuzz0b libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libhwy1t64 libice6 libicu74 libidn12 libijs-0.35 libjbig0 libjbig2dec0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-mathjax libjs-sphinxdoc libjs-underscore libjsoncpp25 libjxl0.7 libkpathsea6 liblcms2-2 libldap2 libllvm18 libmagic-mgc libmagic1t64 libnghttp2-14 libopenjp2-7 libpaper-utils libpaper1 libpdfbox-java libpipeline1 libpixman-1-0 libpotrace0 libpsl5t64 libptexenc1 libpython3-dev libpython3-stdlib libpython3.12-dev libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsm6 libssh-4 libsub-override-perl libsynctex2 libteckit0 libtexlua53-5 libtiff6 libtool libuchardet0 libuv1t64 libwebp7 libwebpmux3 libwmflite-0.2-7 libx11-6 libx11-data libxapian30 libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxmu6 libxpm4 libxrender1 libxt6t64 libzzip-0-13t64 m4 man-db media-types netbase po-debconf poppler-data preview-latex-style python3 python3-cffi python3-cffi-backend python3-dev python3-minimal python3-pkg-resources python3-ply python3-pycparser python3-setuptools python3.12 python3.12-dev python3.12-minimal t1utils tex-common texlive-base texlive-binaries texlive-font-utils texlive-fonts-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures texlive-plain-generic ucf x11-common xdg-utils xfonts-encodings xfonts-utils zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc cmake-doc cmake-format elpa-cmake-mode ninja-build dh-make flit python3-build python3-installer python3-wheel doxygen-latex doxygen-doc doxygen-gui graphviz fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre gettext-doc libasprintf-dev libgettextpo-dev graphicsmagick-dbg groff lrzip libavalon-framework-java libexcalibur-logkit-java liblog4j1.2-java cups-common low-memory-monitor libheif-plugin-ffmpegdec libheif-plugin-jpegdec libheif-plugin-jpegenc libheif-plugin-j2kdec libheif-plugin-j2kenc libheif-plugin-rav1e libheif-plugin-svtenc fonts-mathjax-extras fonts-stix libjs-mathjax-doc liblcms2-utils libtool-doc gfortran | fortran95-compiler gcj-jdk xapian-tools m4-doc apparmor less www-browser libmail-box-perl poppler-utils fonts-japanese-mincho | fonts-ipafont-mincho fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-nanum python3-doc python3-tk python3-venv python-ply-doc python-setuptools-doc python3.12-venv python3.12-doc binfmt-support perl-tk xpdf | pdf-viewer xzdec hintview lcdf-typetools psutils texlive-fonts-recommended-doc texlive-latex-base-doc wp2latex python3-pygments icc-profiles libfile-which-perl texlive-latex-extra-doc texlive-science texlive-latex-recommended-doc texlive-luatex texlive-pstricks dot2tex prerex texlive-pictures-doc vprerex default-jre-headless Recommended packages: curl | wget | lynx dbus libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs fonts-droid-fallback libheif-plugin-aomenc libheif-plugin-x265 javascript-common libldap-common publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl lmodern dvisvgm ps2eps tex-gyre tipa default-jre libspreadsheet-parseexcel-perl ruby tk libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev cmake cmake-data d-shlibs debhelper debugedit dh-autoreconf dh-exec dh-python dh-strip-nondeterminism doxygen dwz file fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lmodern fonts-mathjax fonts-urw-base35 gettext gettext-base ghostscript graphicsmagick graphicsmagick-imagemagick-compat groff-base intltool-debian libapache-pom-java libarchive-zip-perl libarchive13t64 libavahi-client3 libavahi-common-data libavahi-common3 libbrotli1 libbsd0 libcairo2 libclang-cpp18 libclang1-18 libcommons-logging-java libcommons-parent-java libcups2t64 libcurl4t64 libdav1d7 libdbus-1-3 libde265-0 libdebhelper-perl libdeflate0 libdw1t64 libedit2 libelf1t64 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfmt9 libfontbox-java libfontconfig1 libfontenc1 libfreetype6 libglib2.0-0t64 libgraphicsmagick-q16-3t64 libgraphite2-3 libgs-common libgs10 libgs10-common libharfbuzz0b libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libhwy1t64 libice6 libicu74 libidn12 libijs-0.35 libjbig0 libjbig2dec0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-mathjax libjs-sphinxdoc libjs-underscore libjsoncpp25 libjxl0.7 libkpathsea6 liblcms2-2 libldap2 libllvm18 libmagic-mgc libmagic1t64 libnghttp2-14 libopenjp2-7 libpaper-utils libpaper1 libpdfbox-java libpipeline1 libpixman-1-0 libpotrace0 libpsl5t64 libptexenc1 libpython3-dev libpython3-stdlib libpython3.12-dev libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsm6 libssh-4 libsub-override-perl libsynctex2 libteckit0 libtexlua53-5 libtiff6 libtool libuchardet0 libuv1t64 libwebp7 libwebpmux3 libwmflite-0.2-7 libx11-6 libx11-data libxapian30 libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxmu6 libxpm4 libxrender1 libxt6t64 libzzip-0-13t64 m4 man-db media-types netbase po-debconf poppler-data preview-latex-style python3 python3-cffi python3-cffi-backend python3-dev python3-minimal python3-pkg-resources python3-ply python3-pycparser python3-setuptools python3.12 python3.12-dev python3.12-minimal sbuild-build-depends-main-dummy t1utils tex-common texlive-base texlive-binaries texlive-font-utils texlive-fonts-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures texlive-plain-generic ucf x11-common xdg-utils xfonts-encodings xfonts-utils zlib1g-dev 0 upgraded, 179 newly installed, 0 to remove and 0 not upgraded. Need to get 287 MB of archives. After this operation, 1082 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [820 B] Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libpython3.12-minimal s390x 3.12.2-5ubuntu3 [830 kB] Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libexpat1 s390x 2.6.1-2build1 [94.4 kB] Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main s390x python3.12-minimal s390x 3.12.2-5ubuntu3 [2459 kB] Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main s390x python3-minimal s390x 3.12.2-0ubuntu2 [27.1 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main s390x media-types all 10.1.0 [27.5 kB] Get:7 http://ftpmaster.internal/ubuntu noble/main s390x netbase all 6.4 [13.1 kB] Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libpython3.12-stdlib s390x 3.12.2-5ubuntu3 [2066 kB] Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main s390x python3.12 s390x 3.12.2-5ubuntu3 [644 kB] Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libpython3-stdlib s390x 3.12.2-0ubuntu2 [9854 B] Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main s390x python3 s390x 3.12.2-0ubuntu2 [24.1 kB] Get:12 http://ftpmaster.internal/ubuntu noble/main s390x poppler-data all 0.4.12-1 [2060 kB] Get:13 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libbsd0 s390x 0.12.1-1build1 [46.8 kB] Get:14 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libdbus-1-3 s390x 1.14.10-4ubuntu3 [214 kB] Get:15 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libelf1t64 s390x 0.190-1.1build3 [69.6 kB] Get:16 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libglib2.0-0t64 s390x 2.80.0-6ubuntu1 [1329 kB] Get:17 http://ftpmaster.internal/ubuntu noble/main s390x libicu74 s390x 74.2-1ubuntu1 [10.9 MB] Get:18 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libxml2 s390x 2.9.14+dfsg-1.3ubuntu3 [818 kB] Get:19 http://ftpmaster.internal/ubuntu noble/main s390x python3-cffi-backend s390x 1.16.0-2 [111 kB] Get:20 http://ftpmaster.internal/ubuntu noble/main s390x python3-pkg-resources all 68.1.2-2ubuntu1 [168 kB] Get:21 http://ftpmaster.internal/ubuntu noble/main s390x ucf all 3.0043+nmu1 [56.5 kB] Get:22 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libmagic-mgc s390x 1:5.45-3build1 [305 kB] Get:23 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libmagic1t64 s390x 1:5.45-3build1 [93.2 kB] Get:24 http://ftpmaster.internal/ubuntu noble-proposed/main s390x file s390x 1:5.45-3build1 [22.2 kB] Get:25 http://ftpmaster.internal/ubuntu noble/main s390x gettext-base s390x 0.21-14ubuntu1 [39.4 kB] Get:26 http://ftpmaster.internal/ubuntu noble/main s390x libuchardet0 s390x 0.0.8-1 [76.1 kB] Get:27 http://ftpmaster.internal/ubuntu noble-proposed/main s390x groff-base s390x 1.23.0-3build2 [1049 kB] Get:28 http://ftpmaster.internal/ubuntu noble/main s390x libedit2 s390x 3.1-20230828-1 [106 kB] Get:29 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libnghttp2-14 s390x 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[1253 kB] Get:40 http://ftpmaster.internal/ubuntu noble/main s390x m4 s390x 1.4.19-4 [255 kB] Get:41 http://ftpmaster.internal/ubuntu noble/main s390x autoconf all 2.71-3 [339 kB] Get:42 http://ftpmaster.internal/ubuntu noble/main s390x autotools-dev all 20220109.1 [44.9 kB] Get:43 http://ftpmaster.internal/ubuntu noble/main s390x automake all 1:1.16.5-1.3ubuntu1 [558 kB] Get:44 http://ftpmaster.internal/ubuntu noble/main s390x autopoint all 0.21-14ubuntu1 [422 kB] Get:45 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libarchive13t64 s390x 3.7.2-2 [419 kB] Get:46 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libbrotli1 s390x 1.1.0-2build2 [375 kB] Get:47 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libsasl2-modules-db s390x 2.1.28+dfsg1-5ubuntu2 [21.2 kB] Get:48 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libsasl2-2 s390x 2.1.28+dfsg1-5ubuntu2 [57.8 kB] Get:49 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libldap2 s390x 2.6.7+dfsg-1~exp1ubuntu7 [202 kB] Get:50 http://ftpmaster.internal/ubuntu noble/main s390x librtmp1 s390x 2.4+20151223.gitfa8646d.1-2build7 [58.4 kB] Get:51 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libssh-4 s390x 0.10.6-2build2 [189 kB] Get:52 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libcurl4t64 s390x 8.5.0-2ubuntu9 [363 kB] Get:53 http://ftpmaster.internal/ubuntu noble/main s390x libjsoncpp25 s390x 1.9.5-6 [75.5 kB] Get:54 http://ftpmaster.internal/ubuntu noble/main s390x librhash0 s390x 1.4.3-3 [128 kB] Get:55 http://ftpmaster.internal/ubuntu noble-proposed/main s390x cmake-data all 3.28.3-1build6 [2155 kB] Get:56 http://ftpmaster.internal/ubuntu noble-proposed/main s390x cmake s390x 3.28.3-1build6 [11.7 MB] Get:57 http://ftpmaster.internal/ubuntu noble/universe s390x d-shlibs all 0.106 [11.2 kB] Get:58 http://ftpmaster.internal/ubuntu noble/main s390x libdebhelper-perl all 13.14.1ubuntu5 [89.8 kB] Get:59 http://ftpmaster.internal/ubuntu noble/main s390x libtool all 2.4.7-7 [166 kB] Get:60 http://ftpmaster.internal/ubuntu noble/main s390x dh-autoreconf all 20 [16.1 kB] Get:61 http://ftpmaster.internal/ubuntu noble/main s390x libarchive-zip-perl all 1.68-1 [90.2 kB] Get:62 http://ftpmaster.internal/ubuntu noble/main s390x libsub-override-perl all 0.10-1 [10.0 kB] Get:63 http://ftpmaster.internal/ubuntu noble/main s390x libfile-stripnondeterminism-perl all 1.13.1-1 [18.1 kB] Get:64 http://ftpmaster.internal/ubuntu noble/main s390x dh-strip-nondeterminism all 1.13.1-1 [5362 B] Get:65 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libdw1t64 s390x 0.190-1.1build3 [286 kB] Get:66 http://ftpmaster.internal/ubuntu noble-proposed/main s390x debugedit s390x 1:5.0-5build1 [50.5 kB] Get:67 http://ftpmaster.internal/ubuntu noble-proposed/main s390x dwz s390x 0.15-1build6 [122 kB] Get:68 http://ftpmaster.internal/ubuntu noble/main s390x gettext s390x 0.21-14ubuntu1 [917 kB] Get:69 http://ftpmaster.internal/ubuntu noble/main s390x intltool-debian all 0.35.0+20060710.6 [23.2 kB] Get:70 http://ftpmaster.internal/ubuntu noble/main s390x po-debconf all 1.0.21+nmu1 [233 kB] Get:71 http://ftpmaster.internal/ubuntu noble/main s390x debhelper all 13.14.1ubuntu5 [869 kB] Get:72 http://ftpmaster.internal/ubuntu noble/main s390x python3-setuptools all 68.1.2-2ubuntu1 [396 kB] Get:73 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x dh-python all 6.20240401 [110 kB] Get:74 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libllvm18 s390x 1:18.1.2-1ubuntu3 [33.4 MB] Get:75 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libclang-cpp18 s390x 1:18.1.2-1ubuntu3 [16.1 MB] Get:76 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libclang1-18 s390x 1:18.1.2-1ubuntu3 [9349 kB] Get:77 http://ftpmaster.internal/ubuntu noble/universe s390x libfmt9 s390x 9.1.0+ds1-2 [62.4 kB] Get:78 http://ftpmaster.internal/ubuntu noble/universe s390x libxapian30 s390x 1.4.22-1 [656 kB] Get:79 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x doxygen s390x 1.9.8+ds-2build5 [5446 kB] Get:80 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] Get:81 http://ftpmaster.internal/ubuntu noble/main s390x fonts-dejavu-core all 2.37-8 [835 kB] Get:82 http://ftpmaster.internal/ubuntu noble/main s390x libfontenc1 s390x 1:1.1.8-1build1 [14.8 kB] Get:83 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libfreetype6 s390x 2.13.2+dfsg-1build3 [437 kB] Get:84 http://ftpmaster.internal/ubuntu noble/main s390x x11-common all 1:7.7+23ubuntu2 [23.4 kB] Get:85 http://ftpmaster.internal/ubuntu noble/main s390x xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] Get:86 http://ftpmaster.internal/ubuntu noble/main s390x xfonts-utils s390x 1:7.7+6build2 [94.8 kB] Get:87 http://ftpmaster.internal/ubuntu noble/main s390x fonts-urw-base35 all 20200910-8 [11.0 MB] Get:88 http://ftpmaster.internal/ubuntu noble-proposed/main s390x fontconfig-config s390x 2.15.0-1.1ubuntu2 [37.4 kB] Get:89 http://ftpmaster.internal/ubuntu noble/universe s390x fonts-lmodern all 2.005-1 [4799 kB] Get:90 http://ftpmaster.internal/ubuntu noble/main s390x fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] Get:91 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libgs-common all 10.02.1~dfsg1-0ubuntu6 [174 kB] Get:92 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libgs10-common all 10.02.1~dfsg1-0ubuntu6 [488 kB] Get:93 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libavahi-common-data s390x 0.8-13ubuntu5 [29.6 kB] Get:94 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libavahi-common3 s390x 0.8-13ubuntu5 [24.1 kB] Get:95 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libavahi-client3 s390x 0.8-13ubuntu5 [27.2 kB] Get:96 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libcups2t64 s390x 2.4.7-1.2ubuntu3 [282 kB] Get:97 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libfontconfig1 s390x 2.15.0-1.1ubuntu2 [150 kB] Get:98 http://ftpmaster.internal/ubuntu noble/main s390x libidn12 s390x 1.42-1 [59.2 kB] Get:99 http://ftpmaster.internal/ubuntu noble/main s390x libijs-0.35 s390x 0.35-15.1 [15.1 kB] Get:100 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libjbig2dec0 s390x 0.20-1build3 [69.3 kB] Get:101 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-turbo8 s390x 2.1.5-2ubuntu1 [128 kB] Get:102 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] Get:103 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libopenjp2-7 s390x 2.5.0-2build3 [192 kB] Get:104 http://ftpmaster.internal/ubuntu noble/main s390x libpaper1 s390x 1.1.29 [13.3 kB] Get:105 http://ftpmaster.internal/ubuntu noble/main s390x libdeflate0 s390x 1.19-1 [46.0 kB] Get:106 http://ftpmaster.internal/ubuntu noble/main s390x libjbig0 s390x 2.1-6.1ubuntu1 [29.8 kB] Get:107 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libsharpyuv0 s390x 1.3.2-0.4build3 [14.9 kB] Get:108 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libwebp7 s390x 1.3.2-0.4build3 [207 kB] Get:109 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libtiff6 s390x 4.5.1+git230720-4ubuntu2 [218 kB] Get:110 http://ftpmaster.internal/ubuntu noble/main s390x libice6 s390x 2:1.0.10-1build2 [40.8 kB] Get:111 http://ftpmaster.internal/ubuntu noble/main s390x libsm6 s390x 2:1.2.3-1build2 [16.9 kB] Get:112 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libxt6t64 s390x 1:1.2.1-1.2build1 [184 kB] Get:113 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libgs10 s390x 10.02.1~dfsg1-0ubuntu6 [4249 kB] Get:114 http://ftpmaster.internal/ubuntu noble-proposed/main s390x ghostscript s390x 10.02.1~dfsg1-0ubuntu6 [43.5 kB] Get:115 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x libdav1d7 s390x 1.4.1-1build1 [316 kB] Get:116 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x libheif-plugin-dav1d s390x 1.17.6-1ubuntu3 [10.2 kB] Get:117 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x libde265-0 s390x 1.0.15-1build2 [175 kB] Get:118 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x libheif-plugin-libde265 s390x 1.17.6-1ubuntu3 [8300 B] Get:119 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x libheif1 s390x 1.17.6-1ubuntu3 [299 kB] Get:120 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x libhwy1t64 s390x 1.0.7-8.1build1 [236 kB] Get:121 http://ftpmaster.internal/ubuntu noble/main s390x liblcms2-2 s390x 2.14-2 [155 kB] Get:122 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x libjxl0.7 s390x 0.7.0-10.2ubuntu5 [778 kB] Get:123 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libwebpmux3 s390x 1.3.2-0.4build3 [25.4 kB] Get:124 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libwmflite-0.2-7 s390x 0.2.13-1.1build3 [72.1 kB] Get:125 http://ftpmaster.internal/ubuntu noble/universe s390x libgraphicsmagick-q16-3t64 s390x 1.4+really1.3.42-1.1build1 [1313 kB] Get:126 http://ftpmaster.internal/ubuntu noble/universe s390x graphicsmagick s390x 1.4+really1.3.42-1.1build1 [717 kB] Get:127 http://ftpmaster.internal/ubuntu noble/universe s390x libapache-pom-java all 29-2 [5284 B] Get:128 http://ftpmaster.internal/ubuntu noble/main s390x libpixman-1-0 s390x 0.42.2-1 [173 kB] Get:129 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-render0 s390x 1.15-1 [17.0 kB] Get:130 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-shm0 s390x 1.15-1 [5782 B] Get:131 http://ftpmaster.internal/ubuntu noble/main s390x libxrender1 s390x 1:0.9.10-1.1 [19.4 kB] Get:132 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libcairo2 s390x 1.18.0-3 [589 kB] Get:133 http://ftpmaster.internal/ubuntu noble/universe s390x libcommons-parent-java all 56-1 [10.7 kB] Get:134 http://ftpmaster.internal/ubuntu noble/universe s390x libcommons-logging-java all 1.3.0-1ubuntu1 [63.8 kB] Get:135 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libexpat1-dev s390x 2.6.1-2build1 [149 kB] Get:136 http://ftpmaster.internal/ubuntu noble/main s390x libgraphite2-3 s390x 1.3.14-2 [90.4 kB] Get:137 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libharfbuzz0b s390x 8.3.0-2build2 [515 kB] Get:138 http://ftpmaster.internal/ubuntu noble/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] Get:139 http://ftpmaster.internal/ubuntu noble/main s390x libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] Get:140 http://ftpmaster.internal/ubuntu noble/main s390x libjs-sphinxdoc all 7.2.6-6 [149 kB] Get:141 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libkpathsea6 s390x 2023.20230311.66589-9build3 [66.6 kB] Get:142 http://ftpmaster.internal/ubuntu noble/main s390x libpaper-utils s390x 1.1.29 [8452 B] Get:143 http://ftpmaster.internal/ubuntu noble/universe s390x libpotrace0 s390x 1.16-2 [16.4 kB] Get:144 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libptexenc1 s390x 2023.20230311.66589-9build3 [41.6 kB] Get:145 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libpython3.12t64 s390x 3.12.2-5ubuntu3 [2511 kB] Get:146 http://ftpmaster.internal/ubuntu noble-proposed/main s390x zlib1g-dev s390x 1:1.3.dfsg-3.1ubuntu2 [904 kB] Get:147 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libpython3.12-dev s390x 3.12.2-5ubuntu3 [5899 kB] Get:148 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libpython3-dev s390x 3.12.2-0ubuntu2 [10.1 kB] Get:149 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libsynctex2 s390x 2023.20230311.66589-9build3 [65.1 kB] Get:150 http://ftpmaster.internal/ubuntu noble/universe s390x libteckit0 s390x 2.5.12+ds1-1 [433 kB] Get:151 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libtexlua53-5 s390x 2023.20230311.66589-9build3 [132 kB] Get:152 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libxmu6 s390x 2:1.1.3-3build2 [53.0 kB] Get:153 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libxpm4 s390x 1:3.5.17-1build2 [41.2 kB] Get:154 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libxaw7 s390x 2:1.0.14-1build2 [204 kB] Get:155 http://ftpmaster.internal/ubuntu noble/main s390x libxi6 s390x 2:1.8.1-1 [35.7 kB] Get:156 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x libzzip-0-13t64 s390x 0.13.72+dfsg.1-1.2build1 [28.6 kB] Get:157 http://ftpmaster.internal/ubuntu noble/universe s390x tex-common all 6.18 [32.8 kB] Get:158 http://ftpmaster.internal/ubuntu noble/universe s390x preview-latex-style all 13.2-1 [347 kB] Get:159 http://ftpmaster.internal/ubuntu noble/main s390x python3-ply all 3.11-6 [46.5 kB] Get:160 http://ftpmaster.internal/ubuntu noble/main s390x python3-pycparser all 2.21-1 [76.9 kB] Get:161 http://ftpmaster.internal/ubuntu noble/main s390x python3-cffi all 1.16.0-2 [74.3 kB] Get:162 http://ftpmaster.internal/ubuntu noble-proposed/main s390x python3.12-dev s390x 3.12.2-5ubuntu3 [498 kB] Get:163 http://ftpmaster.internal/ubuntu noble-proposed/main s390x python3-dev s390x 3.12.2-0ubuntu2 [26.7 kB] Get:164 http://ftpmaster.internal/ubuntu noble/main s390x t1utils s390x 1.41-4build2 [61.5 kB] Get:165 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x texlive-binaries s390x 2023.20230311.66589-9build3 [9354 kB] Get:166 http://ftpmaster.internal/ubuntu noble/main s390x xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] Get:167 http://ftpmaster.internal/ubuntu noble/universe s390x texlive-base all 2023.20240207-1 [21.7 MB] Get:168 http://ftpmaster.internal/ubuntu noble/universe s390x texlive-font-utils all 2023.20240207-1 [7035 kB] Get:169 http://ftpmaster.internal/ubuntu noble/universe s390x texlive-fonts-recommended all 2023.20240207-1 [4973 kB] Get:170 http://ftpmaster.internal/ubuntu noble/universe s390x texlive-latex-base all 2023.20240207-1 [1238 kB] Get:171 http://ftpmaster.internal/ubuntu noble/universe s390x libfontbox-java all 1:1.8.16-5 [208 kB] Get:172 http://ftpmaster.internal/ubuntu noble/universe s390x libpdfbox-java all 1:1.8.16-5 [5521 kB] Get:173 http://ftpmaster.internal/ubuntu noble/universe s390x texlive-latex-recommended all 2023.20240207-1 [8826 kB] Get:174 http://ftpmaster.internal/ubuntu noble/universe s390x texlive-pictures all 2023.20240207-1 [16.7 MB] Get:175 http://ftpmaster.internal/ubuntu noble/universe s390x texlive-latex-extra all 2023.20240207-1 [19.2 MB] Get:176 http://ftpmaster.internal/ubuntu noble/universe s390x texlive-plain-generic all 2023.20240207-1 [29.0 MB] Get:177 http://ftpmaster.internal/ubuntu noble-proposed/main s390x dh-exec s390x 0.29build1 [25.9 kB] Get:178 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x graphicsmagick-imagemagick-compat all 1.4+really1.3.42-1.1build2 [5856 B] Get:179 http://ftpmaster.internal/ubuntu noble/main s390x libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] Preconfiguring packages ... Fetched 287 MB in 36s (8056 kB/s) Selecting previously unselected package libpython3.12-minimal:s390x. (Reading database ... 15548 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.2-5ubuntu3_s390x.deb ... Unpacking libpython3.12-minimal:s390x (3.12.2-5ubuntu3) ... Selecting previously unselected package libexpat1:s390x. Preparing to unpack .../libexpat1_2.6.1-2build1_s390x.deb ... Unpacking libexpat1:s390x (2.6.1-2build1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.2-5ubuntu3_s390x.deb ... Unpacking python3.12-minimal (3.12.2-5ubuntu3) ... Setting up libpython3.12-minimal:s390x (3.12.2-5ubuntu3) ... Setting up libexpat1:s390x (2.6.1-2build1) ... Setting up python3.12-minimal (3.12.2-5ubuntu3) ... Selecting previously unselected package python3-minimal. (Reading database ... 15866 files and directories currently installed.) 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Setting up libpixman-1-0:s390x (0.42.2-1) ... Setting up libxapian30:s390x (1.4.22-1) ... Setting up libsharpyuv0:s390x (1.3.2-0.4build3) ... Setting up libxau6:s390x (1:1.0.9-1build5) ... Setting up fonts-mathjax (2.7.9+dfsg-1) ... Setting up libjs-mathjax (2.7.9+dfsg-1) ... Setting up libwmflite-0.2-7:s390x (0.2.13-1.1build3) ... Setting up libmagic-mgc (1:5.45-3build1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libijs-0.35:s390x (0.35-15.1) ... Setting up libdebhelper-perl (13.14.1ubuntu5) ... Setting up libgs-common (10.02.1~dfsg1-0ubuntu6) ... Setting up libbrotli1:s390x (1.1.0-2build2) ... Setting up libfontbox-java (1:1.8.16-5) ... Setting up libuv1t64:s390x (1.48.0-1.1build1) ... Setting up libmagic1t64:s390x (1:5.45-3build1) ... Setting up x11-common (1:7.7+23ubuntu2) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libpsl5t64:s390x (0.21.2-1.1build1) ... Setting up libnghttp2-14:s390x (1.59.0-1build2) ... Setting up libdeflate0:s390x (1.19-1) ... Setting up gettext-base (0.21-14ubuntu1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3build1) ... Setting up libjbig0:s390x (2.1-6.1ubuntu1) ... Setting up libelf1t64:s390x (0.190-1.1build3) ... Setting up poppler-data (0.4.12-1) ... Setting up libdw1t64:s390x (0.190-1.1build3) ... Setting up libsasl2-modules-db:s390x (2.1.28+dfsg1-5ubuntu2) ... Setting up libfontenc1:s390x (1:1.1.8-1build1) ... Setting up autotools-dev (20220109.1) ... Setting up libglib2.0-0t64:s390x (2.80.0-6ubuntu1) ... No schema files found: doing nothing. Setting up libexpat1-dev:s390x (2.6.1-2build1) ... Setting up libzzip-0-13t64:s390x (0.13.72+dfsg.1-1.2build1) ... Setting up libfreetype6:s390x (2.13.2+dfsg-1build3) ... Setting up libx11-data (2:1.8.7-1) ... Setting up libjbig2dec0:s390x (0.20-1build3) ... Setting up librtmp1:s390x (2.4+20151223.gitfa8646d.1-2build7) ... Setting up libteckit0:s390x (2.5.12+ds1-1) ... Setting up libapache-pom-java (29-2) ... Setting up libavahi-common-data:s390x (0.8-13ubuntu5) ... Setting up libdbus-1-3:s390x (1.14.10-4ubuntu3) ... Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... Setting up t1utils (1.41-4build2) ... Setting up libtexlua53-5:s390x (2023.20230311.66589-9build3) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libidn12:s390x (1.42-1) ... Setting up autopoint (0.21-14ubuntu1) ... Setting up libjsoncpp25:s390x (1.9.5-6) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up d-shlibs (0.106) ... Setting up ucf (3.0043+nmu1) ... Setting up libjxl0.7:s390x (0.7.0-10.2ubuntu5) ... Setting up libjpeg-turbo8:s390x (2.1.5-2ubuntu1) ... Setting up libkpathsea6:s390x (2023.20230311.66589-9build3) ... Setting up libsasl2-2:s390x (2.1.28+dfsg1-5ubuntu2) ... Setting up libssh-4:s390x (0.10.6-2build2) ... Setting up autoconf (2.71-3) ... Setting up libwebp7:s390x (1.3.2-0.4build3) ... Setting up libfmt9:s390x (9.1.0+ds1-2) ... Setting up libicu74:s390x (74.2-1ubuntu1) ... Setting up zlib1g-dev:s390x (1:1.3.dfsg-3.1ubuntu2) ... Setting up dwz (0.15-1build6) ... Setting up libdav1d7:s390x (1.4.1-1build1) ... Setting up librhash0:s390x (1.4.3-3) ... Setting up libuchardet0:s390x (0.0.8-1) ... Setting up debugedit (1:5.0-5build1) ... Setting up fonts-lmodern (2.005-1) ... Setting up libopenjp2-7:s390x (2.5.0-2build3) ... Setting up libsub-override-perl (0.10-1) ... Setting up libharfbuzz0b:s390x (8.3.0-2build2) ... Setting up netbase (6.4) ... Setting up cmake-data (3.28.3-1build6) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libde265-0:s390x (1.0.15-1build2) ... Setting up libwebpmux3:s390x (1.3.2-0.4build3) ... Setting up libbsd0:s390x (0.12.1-1build1) ... Setting up libxml2:s390x (2.9.14+dfsg-1.3ubuntu3) ... Setting up xdg-utils (1.1.3-4.1ubuntu3) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up libldap2:s390x (2.6.7+dfsg-1~exp1ubuntu7) ... Setting up libsynctex2:s390x (2023.20230311.66589-9build3) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up libpotrace0:s390x (1.16-2) ... Setting up libjpeg8:s390x (8c-2ubuntu11) ... Setting up automake (1:1.16.5-1.3ubuntu1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libpaper1:s390x (1.1.29) ... Creating config file /etc/papersize with new version Setting up libice6:s390x (2:1.0.10-1build2) ... Setting up libxdmcp6:s390x (1:1.1.3-0ubuntu5) ... Setting up libxcb1:s390x (1.15-1) ... Setting up gettext (0.21-14ubuntu1) ... Setting up libpdfbox-java (1:1.8.16-5) ... Setting up libpython3.12-stdlib:s390x (3.12.2-5ubuntu3) ... Setting up libcurl4t64:s390x (8.5.0-2ubuntu9) ... Setting up libtool (2.4.7-7) ... Setting up libxcb-render0:s390x (1.15-1) ... Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... Setting up python3.12 (3.12.2-5ubuntu3) ... Setting up libedit2:s390x (3.1-20230828-1) ... Setting up libcommons-parent-java (56-1) ... Setting up libavahi-common3:s390x (0.8-13ubuntu5) ... Setting up libcommons-logging-java (1.3.0-1ubuntu1) ... Setting up libxcb-shm0:s390x (1.15-1) ... Setting up libpaper-utils (1.1.29) ... Setting up xfonts-utils (1:7.7+6build2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libpython3.12t64:s390x (3.12.2-5ubuntu3) ... Setting up dh-autoreconf (20) ... Setting up tex-common (6.18) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libptexenc1:s390x (2023.20230311.66589-9build3) ... Setting up libjs-sphinxdoc (7.2.6-6) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-3build2) ... Setting up libtiff6:s390x (4.5.1+git230720-4ubuntu2) ... Setting up libx11-6:s390x (2:1.8.7-1) ... Setting up libfontconfig1:s390x (2.15.0-1.1ubuntu2) ... Setting up libsm6:s390x (2:1.2.3-1build2) ... Setting up libarchive13t64:s390x (3.7.2-2) ... Setting up libavahi-client3:s390x (0.8-13ubuntu5) ... Setting up libpython3-stdlib:s390x (3.12.2-0ubuntu2) ... Setting up libllvm18:s390x (1:18.1.2-1ubuntu3) ... Setting up libclang1-18 (1:18.1.2-1ubuntu3) ... Setting up libxpm4:s390x (1:3.5.17-1build2) ... Setting up libxrender1:s390x (1:0.9.10-1.1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up preview-latex-style (13.2-1) ... Setting up libxext6:s390x (2:1.3.4-1build1) ... Setting up python3 (3.12.2-0ubuntu2) ... Setting up libpython3.12-dev:s390x (3.12.2-5ubuntu3) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up man-db (2.12.0-4build1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /usr/lib/systemd/system/man-db.timer. Setting up libcairo2:s390x (1.18.0-3) ... Setting up libxt6t64:s390x (1:1.2.1-1.2build1) ... Setting up python3.12-dev (3.12.2-5ubuntu3) ... Setting up cmake (3.28.3-1build6) ... Setting up libclang-cpp18 (1:18.1.2-1ubuntu3) ... Setting up libcups2t64:s390x (2.4.7-1.2ubuntu3) ... Setting up python3-cffi-backend:s390x (1.16.0-2) ... Setting up python3-pkg-resources (68.1.2-2ubuntu1) ... Setting up libgs10-common (10.02.1~dfsg1-0ubuntu6) ... Setting up libxmu6:s390x (2:1.1.3-3build2) ... Setting up libpython3-dev:s390x (3.12.2-0ubuntu2) ... Setting up python3-setuptools (68.1.2-2ubuntu1) ... Setting up libxi6:s390x (2:1.8.1-1) ... Setting up python3-ply (3.11-6) ... Setting up debhelper (13.14.1ubuntu5) ... Setting up dh-exec (0.29build1) ... Setting up libxaw7:s390x (2:1.0.14-1build2) ... Setting up python3-pycparser (2.21-1) ... Setting up doxygen (1.9.8+ds-2build5) ... Setting up python3-dev (3.12.2-0ubuntu2) ... Setting up texlive-binaries (2023.20230311.66589-9build3) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up texlive-base (2023.20240207-1) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex Setting up libgs10:s390x (10.02.1~dfsg1-0ubuntu6) ... Setting up dh-python (6.20240401) ... Setting up python3-cffi (1.16.0-2) ... Setting up texlive-plain-generic (2023.20240207-1) ... Setting up texlive-font-utils (2023.20240207-1) ... Setting up ghostscript (10.02.1~dfsg1-0ubuntu6) ... Setting up texlive-latex-base (2023.20240207-1) ... Setting up texlive-latex-recommended (2023.20240207-1) ... Setting up texlive-pictures (2023.20240207-1) ... Setting up texlive-fonts-recommended (2023.20240207-1) ... Setting up texlive-latex-extra (2023.20240207-1) ... Setting up libheif1:s390x (1.17.6-1ubuntu3) ... Setting up libheif-plugin-dav1d:s390x (1.17.6-1ubuntu3) ... Setting up libheif-plugin-libde265:s390x (1.17.6-1ubuntu3) ... Setting up libgraphicsmagick-q16-3t64 (1.4+really1.3.42-1.1build1) ... Setting up graphicsmagick (1.4+really1.3.42-1.1build1) ... Setting up graphicsmagick-imagemagick-compat (1.4+really1.3.42-1.1build2) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.39-0ubuntu8) ... Processing triggers for systemd (255.4-1ubuntu6) ... Processing triggers for tex-common (6.18) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (s390x included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-173-generic #191-Ubuntu SMP Fri Feb 2 13:54:49 UTC 2024 s390x (s390x) Toolchain package versions: binutils_2.42-4ubuntu2 dpkg-dev_1.22.6ubuntu6 g++-13_13.2.0-23ubuntu3 gcc-13_13.2.0-23ubuntu3 libc6-dev_2.39-0ubuntu8 libstdc++-13-dev_13.2.0-23ubuntu3 libstdc++6_14-20240330-1ubuntu2 linux-libc-dev_6.8.0-20.20 Package versions: adduser_3.137ubuntu1 advancecomp_2.5-1 apt_2.7.14build2 apt-utils_2.7.14build2 autoconf_2.71-3 automake_1:1.16.5-1.3ubuntu1 autopoint_0.21-14ubuntu1 autotools-dev_20220109.1 base-files_13ubuntu9 base-passwd_3.6.3 bash_5.2.21-2ubuntu4 bash-completion_1:2.11-8 binutils_2.42-4ubuntu2 binutils-common_2.42-4ubuntu2 binutils-s390x-linux-gnu_2.42-4ubuntu2 bsdextrautils_2.39.3-9ubuntu4 bsdutils_1:2.39.3-9ubuntu4 build-essential_12.10ubuntu1 bzip2_1.0.8-5.1 ca-certificates_20240203 cmake_3.28.3-1build6 cmake-data_3.28.3-1build6 coreutils_9.4-3ubuntu5 cpp_4:13.2.0-7ubuntu1 cpp-13_13.2.0-23ubuntu3 cpp-13-s390x-linux-gnu_13.2.0-23ubuntu3 cpp-s390x-linux-gnu_4:13.2.0-7ubuntu1 d-shlibs_0.106 dash_0.5.12-6ubuntu5 debconf_1.5.86 debconf-i18n_1.5.86 debhelper_13.14.1ubuntu5 debianutils_5.17build1 debugedit_1:5.0-5build1 dh-autoreconf_20 dh-exec_0.29build1 dh-python_6.20240401 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 doxygen_1.9.8+ds-2build5 dpkg_1.22.6ubuntu6 dpkg-dev_1.22.6ubuntu6 dwz_0.15-1build6 e2fsprogs_1.47.0-2.4~exp1ubuntu3 fakeroot_1.33-1 file_1:5.45-3build1 findutils_4.9.0-5 fontconfig-config_2.15.0-1.1ubuntu2 fonts-dejavu-core_2.37-8 fonts-dejavu-mono_2.37-8 fonts-lmodern_2.005-1 fonts-mathjax_2.7.9+dfsg-1 fonts-urw-base35_20200910-8 g++_4:13.2.0-7ubuntu1 g++-13_13.2.0-23ubuntu3 g++-13-s390x-linux-gnu_13.2.0-23ubuntu3 g++-s390x-linux-gnu_4:13.2.0-7ubuntu1 gcc_4:13.2.0-7ubuntu1 gcc-13_13.2.0-23ubuntu3 gcc-13-base_13.2.0-23ubuntu3 gcc-13-s390x-linux-gnu_13.2.0-23ubuntu3 gcc-14-base_14-20240330-1ubuntu2 gcc-s390x-linux-gnu_4:13.2.0-7ubuntu1 gettext_0.21-14ubuntu1 gettext-base_0.21-14ubuntu1 ghostscript_10.02.1~dfsg1-0ubuntu6 gpg_2.4.4-2ubuntu16 gpg-agent_2.4.4-2ubuntu16 gpgconf_2.4.4-2ubuntu16 gpgv_2.4.4-2ubuntu16 graphicsmagick_1.4+really1.3.42-1.1build1 graphicsmagick-imagemagick-compat_1.4+really1.3.42-1.1build2 grep_3.11-4 groff-base_1.23.0-3build2 gzip_1.12-1ubuntu2 hostname_3.23+nmu2ubuntu1 init_1.66ubuntu1 init-system-helpers_1.66ubuntu1 intltool-debian_0.35.0+20060710.6 krb5-locales_1.20.1-6ubuntu2 libacl1_2.3.2-1 libapache-pom-java_29-2 libapparmor1_4.0.0-beta3-0ubuntu3 libapt-pkg6.0t64_2.7.14build2 libarchive-zip-perl_1.68-1 libarchive13t64_3.7.2-2 libargon2-1_0~20190702+dfsg-4 libasan8_14-20240330-1ubuntu2 libassuan0_2.5.6-1 libatomic1_14-20240330-1ubuntu2 libattr1_1:2.5.2-1 libaudit-common_1:3.1.2-2.1build1 libaudit1_1:3.1.2-2.1build1 libavahi-client3_0.8-13ubuntu5 libavahi-common-data_0.8-13ubuntu5 libavahi-common3_0.8-13ubuntu5 libbinutils_2.42-4ubuntu2 libblkid1_2.39.3-9ubuntu4 libbrotli1_1.1.0-2build2 libbsd0_0.12.1-1build1 libbz2-1.0_1.0.8-5.1 libc-bin_2.39-0ubuntu8 libc-dev-bin_2.39-0ubuntu8 libc6_2.39-0ubuntu8 libc6-dev_2.39-0ubuntu8 libcairo2_1.18.0-3 libcap-ng0_0.8.4-2build2 libcap2_1:2.66-5ubuntu1 libcc1-0_14-20240330-1ubuntu2 libclang-cpp18_1:18.1.2-1ubuntu3 libclang1-18_1:18.1.2-1ubuntu3 libcom-err2_1.47.0-2.4~exp1ubuntu3 libcommons-logging-java_1.3.0-1ubuntu1 libcommons-parent-java_56-1 libcrypt-dev_1:4.4.36-4 libcrypt1_1:4.4.36-4 libcryptsetup12_2:2.7.0-1ubuntu3 libctf-nobfd0_2.42-4ubuntu2 libctf0_2.42-4ubuntu2 libcups2t64_2.4.7-1.2ubuntu3 libcurl4t64_8.5.0-2ubuntu9 libdav1d7_1.4.1-1build1 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libgraphicsmagick-q16-3t64_1.4+really1.3.42-1.1build1 libgraphite2-3_1.3.14-2 libgs-common_10.02.1~dfsg1-0ubuntu6 libgs10_10.02.1~dfsg1-0ubuntu6 libgs10-common_10.02.1~dfsg1-0ubuntu6 libgssapi-krb5-2_1.20.1-6ubuntu2 libharfbuzz0b_8.3.0-2build2 libheif-plugin-dav1d_1.17.6-1ubuntu3 libheif-plugin-libde265_1.17.6-1ubuntu3 libheif1_1.17.6-1ubuntu3 libhogweed6t64_3.9.1-2.2build1 libhwy1t64_1.0.7-8.1build1 libice6_2:1.0.10-1build2 libicu74_74.2-1ubuntu1 libidn12_1.42-1 libidn2-0_2.3.7-2 libijs-0.35_0.35-15.1 libip4tc2_1.8.10-3ubuntu1 libisl23_0.26-3 libitm1_14-20240330-1ubuntu2 libjansson4_2.14-2build2 libjbig0_2.1-6.1ubuntu1 libjbig2dec0_0.20-1build3 libjpeg-turbo8_2.1.5-2ubuntu1 libjpeg8_8c-2ubuntu11 libjs-jquery_3.6.1+dfsg+~3.5.14-1 libjs-mathjax_2.7.9+dfsg-1 libjs-sphinxdoc_7.2.6-6 libjs-underscore_1.13.4~dfsg+~1.11.4-3 libjson-c5_0.17-1 libjsoncpp25_1.9.5-6 libjxl0.7_0.7.0-10.2ubuntu5 libk5crypto3_1.20.1-6ubuntu2 libkeyutils1_1.6.3-3 libkmod2_31+20240202-2ubuntu5 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python3-cffi-backend_1.16.0-2 python3-dev_3.12.2-0ubuntu2 python3-minimal_3.12.2-0ubuntu2 python3-pkg-resources_68.1.2-2ubuntu1 python3-ply_3.11-6 python3-pycparser_2.21-1 python3-setuptools_68.1.2-2ubuntu1 python3.12_3.12.2-5ubuntu3 python3.12-dev_3.12.2-5ubuntu3 python3.12-minimal_3.12.2-5ubuntu3 readline-common_8.2-4build1 rpcsvc-proto_1.4.2-0ubuntu6 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.22 systemd_255.4-1ubuntu6 systemd-dev_255.4-1ubuntu6 systemd-sysv_255.4-1ubuntu6 sysvinit-utils_3.08-6ubuntu2 t1utils_1.41-4build2 tar_1.35+dfsg-3 tex-common_6.18 texlive-base_2023.20240207-1 texlive-binaries_2023.20230311.66589-9build3 texlive-font-utils_2023.20240207-1 texlive-fonts-recommended_2023.20240207-1 texlive-latex-base_2023.20240207-1 texlive-latex-extra_2023.20240207-1 texlive-latex-recommended_2023.20240207-1 texlive-pictures_2023.20240207-1 texlive-plain-generic_2023.20240207-1 tzdata_2024a-1ubuntu1 ubuntu-keyring_2023.11.28.1 ucf_3.0043+nmu1 util-linux_2.39.3-9ubuntu4 uuid-runtime_2.39.3-9ubuntu4 x11-common_1:7.7+23ubuntu2 xdg-utils_1.1.3-4.1ubuntu3 xfonts-encodings_1:1.0.5-0ubuntu2 xfonts-utils_1:7.7+6build2 xz-utils_5.6.1+really5.4.5-1 zlib1g_1:1.3.dfsg-3.1ubuntu2 zlib1g-dev_1:1.3.dfsg-3.1ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: isospec Binary: libisospec++-dev, libisospec++2t64, python3-isospec, libisospec++-doc Architecture: any all Version: 2.2.1-4.1build1 Maintainer: Ubuntu Developers Uploaders: Filippo Rusconi Homepage: https://github.com/MatteoLacki/IsoSpec Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/debichem-team/isospec Vcs-Git: https://salsa.debian.org/debichem-team/isospec.git Build-Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), dh-exec, graphicsmagick-imagemagick-compat, cmake, d-shlibs, dh-python, python3-dev, python3-setuptools, python3-cffi, texlive-latex-base, texlive-latex-recommended, texlive-latex-extra, texlive-plain-generic, texlive-fonts-recommended, texlive-font-utils, ghostscript, doxygen, libjs-mathjax Package-List: libisospec++-dev deb libdevel optional arch=any libisospec++-doc deb doc optional arch=all libisospec++2t64 deb libs optional arch=any python3-isospec deb python optional arch=any Checksums-Sha1: 6af6b92579bd20e907cef89f229815a78eef095e 2173213 isospec_2.2.1.orig.tar.gz 28d463d5550152a01b98f5cefe254177c3f6edca 33904 isospec_2.2.1-4.1build1.debian.tar.xz Checksums-Sha256: 3158f659953918c3eea867bf32afbb2a531187e3c2b504e869b70c7a5edc2383 2173213 isospec_2.2.1.orig.tar.gz ebf8e1d9e178a1dc15c724a9d00cc446c7b3fc4d2047b6f4f1684f26e49dd716 33904 isospec_2.2.1-4.1build1.debian.tar.xz Files: 647bdc19f31afe75d06e434b7ed8fa44 2173213 isospec_2.2.1.orig.tar.gz 187b3cb649d60d0bfde9b4de479aaa89 33904 isospec_2.2.1-4.1build1.debian.tar.xz Original-Maintainer: The Debichem Group -----BEGIN PGP SIGNATURE----- iQJOBAEBCgA4FiEErEg/aN5yj0PyIC/KVo0w8yGyEz0FAmYIu6gaHHN0ZXZlLmxh bmdhc2VrQHVidW50dS5jb20ACgkQVo0w8yGyEz2q8RAAsswXY2BO5uxtVtDF1hxH pMJAxaht1+1X0xsd/N38ZBn0q5LDyubV844uqI7bvmYNQpW7PTB613TlaYcD8ft+ NeahpSg3htdlSkg7GDWz2aDHfZi+hPNLDrVX9jIIkmT55N3O29p8T3J9+NgGQzZ+ WXVIGtQOn7AY+SLLS7CwUKS2it41Xbfg+JCUJv5WqRw+sGrmdDZbU1NjUNaTuZEd ctTYaSn8idgLpOJMWBO1y2SfswM34OGE2CMdCGMBMNCEyl26WjyyT2L0My5sO4mM /R9QejK6AIv+2dLbkDEbKqhGCeqjC1+z6Y8DAYC4iYHKJ8Q862AtOENs9wt0cMjT ZLHnnbLwYbqAdmhKeNbezpRZzYtsJE+3nk69C78mkd+FzKrpcpw5j9qqeELUOqnL OwWDDrSLdNvd46J0+ECKbYPbhBH3bhuWHfQ7ZicsEK7AZyBU7SBOdcklcpL7I2Ig w4yZJAAUw/BjXfTZObAADpMrO8yeZWh3I7/PChvpLY5PsmnCbFyKrdeukv5X/4sT VBbotjDIRAjalUka4tACAYWSArR3xOwbvi9X+yUKX5LXsD2pLi+/N9zIY2idD3C3 7sDRcXAVT7wHZ5JvzKFgCcAVoUfFwkQJuuQ06XdKz2i6zBubxb45d7p4crLLgPF8 2EZl/w4AtU687h7oSX1DuTA= =53oX -----END PGP SIGNATURE----- gpgv: Signature made Sun Mar 31 01:26:00 2024 UTC gpgv: using RSA key AC483F68DE728F43F2202FCA568D30F321B2133D gpgv: issuer "steve.langasek@ubuntu.com" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./isospec_2.2.1-4.1build1.dsc: no acceptable signature found dpkg-source: info: extracting isospec in /<> dpkg-source: info: unpacking isospec_2.2.1.orig.tar.gz dpkg-source: info: unpacking isospec_2.2.1-4.1build1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0001-Ensure-the-header-files-are-found-in-the-system.patch dpkg-source: info: applying 0002-Remove-the-mtune-native-march-native.patch dpkg-source: info: applying software-version.patch dpkg-source: info: applying 0003-cmake-directive-avoid-rpath.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-27974325 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-27974325 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-27974325 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package isospec dpkg-buildpackage: info: source version 2.2.1-4.1build1 dpkg-buildpackage: info: source distribution noble dpkg-source --before-build . dpkg-buildpackage: info: host architecture s390x fakeroot debian/rules clean dpkg-query: no packages found matching r-base-dev dpkg-query: no packages found matching r-base-core dh clean --with python3 dh_auto_clean make -j4 clean make[1]: Entering directory '/<>' rm -rf IsoSpecPy.egg-info build dist make[1]: Leaving directory '/<>' debian/rules override_dh_clean make[1]: Entering directory '/<>' dpkg-query: no packages found matching r-base-dev dpkg-query: no packages found matching r-base-core rm -rf obj-x86_64-linux-gnu rm -rf build rm -f compile_commands.json rm -rf .pc rm -rf IsoSpecPy.egg-info # The setup.py script immediately creates that link which # makes the package building to stop because it finds that # the source tree has changed. So, first remove that link, # that we'll recreate when we need it later, in the # override_dh_auto_build target. rm -rf IsoSpecPy/IsoSpec++ rm -rf .pybuild/ rm -rf tmp-install/ rm -rf IsoSpec++/IsoSpec++ rm -rf IsoSpecPy/build/ rm -rf man/html/ rm -rf man/latex/ rm -rf man/man/ # Now the default target dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/libisospec\+\+-dev.substvars debian/libisospec\+\+2t64.substvars debian/python3-isospec.substvars debian/libisospec\+\+-doc.substvars debian/files rm -fr -- debian/libisospec\+\+-dev/ debian/tmp/ debian/libisospec\+\+2t64/ debian/python3-isospec/ debian/libisospec\+\+-doc/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) make[1]: Leaving directory '/<>' debian/rules build-arch dpkg-query: no packages found matching r-base-dev dpkg-query: no packages found matching r-base-core dh build-arch --with python3 dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dpkg-query: no packages found matching r-base-dev dpkg-query: no packages found matching r-base-core dh_auto_configure -O--buildsystem=cmake -- \ -DCMAKE_INSTALL_PREFIX=/usr \ -DISOSPEC_LIB_VERSION=2.1.0 -DISOSPEC_LIB_SOVERSION=2 cd obj-s390x-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/s390x-linux-gnu -DCMAKE_INSTALL_PREFIX=/usr -DISOSPEC_LIB_VERSION=2.1.0 -DISOSPEC_LIB_SOVERSION=2 .. -- The C compiler identification is GNU 13.2.0 -- The CXX compiler identification is GNU 13.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done Configuring build for project IsoSpec -- CMAKE_CXX_COMPILER: /usr/bin/c++ -- Setting definition -Wno-unknown-pragmas. -- Setting definition -Wall. -- Setting definition -Wextra. -- Setting definition -pedantic. -- CMAKE_SOURCE_DIR: /<> -- CMAKE_BINARY_DIR: /<>/obj-s390x-linux-gnu UNIX non APPLE environment ~~~~~~ Instructions ~~~~~~ On UNIX/GNU-Linux, please run the configuration like this: cmake -G "Unix Makefiles" -DCMAKE_BUILD_TYPE= -DCMAKE_INSTALL_PREFIX= ../development -- Starting configuration for the doc material for IsoSpec  gm convert: Unable to read font (/usr/share/fonts/type1/gsfonts/n019003l.pfb). gm convert: Unable to read font (/usr/share/fonts/type1/gsfonts/n019003l.pfb). -- Finished configuration of the doc material. -- Starting configuration for the example material for IsoSpec  -- Finished configuration for the example material. The build toolchain is: Linux  -- CMAKE_BUILD_TYPE: None. -- CMAKE_INSTALL_PREFIX: /usr. "Now configuring IsoSpec++/ for IsoSpec" -- Configuring done (1.5s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_FIND_USE_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /<>/obj-s390x-linux-gnu dh_auto_configure -O--buildsystem=cmake -- \ -DCMAKE_INSTALL_PREFIX=/usr \ -DISOSPEC_LIB_VERSION=2.1.0 -DISOSPEC_LIB_SOVERSION=2 cd obj-s390x-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/s390x-linux-gnu -DCMAKE_INSTALL_PREFIX=/usr -DISOSPEC_LIB_VERSION=2.1.0 -DISOSPEC_LIB_SOVERSION=2 .. Configuring build for project IsoSpec -- CMAKE_CXX_COMPILER: /usr/bin/c++ -- Setting definition -Wno-unknown-pragmas. -- Setting definition -Wall. -- Setting definition -Wextra. -- Setting definition -pedantic. -- CMAKE_SOURCE_DIR: /<> -- CMAKE_BINARY_DIR: /<>/obj-s390x-linux-gnu UNIX non APPLE environment ~~~~~~ Instructions ~~~~~~ On UNIX/GNU-Linux, please run the configuration like this: cmake -G "Unix Makefiles" -DCMAKE_BUILD_TYPE= -DCMAKE_INSTALL_PREFIX= ../development -- Starting configuration for the doc material for IsoSpec  gm convert: Unable to read font (/usr/share/fonts/type1/gsfonts/n019003l.pfb). gm convert: Unable to read font (/usr/share/fonts/type1/gsfonts/n019003l.pfb). -- Finished configuration of the doc material. -- Starting configuration for the example material for IsoSpec  -- Finished configuration for the example material. The build toolchain is: Linux  -- CMAKE_BUILD_TYPE: None. -- CMAKE_INSTALL_PREFIX: /usr. "Now configuring IsoSpec++/ for IsoSpec" -- Configuring done (0.7s) -- Generating done (0.0s) -- Build files have been written to: /<>/obj-s390x-linux-gnu dh_auto_configure -O--buildsystem=pybuild -O--system=distutils --sourcedirectory=. pybuild --configure -i python{version} -p 3.12 I: pybuild base:311: python3.12 setup.py config running config dh override_dh_auto_configure --with python3 make[1]: Leaving directory '/<>' rm -f debian/libisospec\+\+-dev.debhelper.log debian/libisospec\+\+2t64.debhelper.log debian/python3-isospec.debhelper.log debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dpkg-query: no packages found matching r-base-dev dpkg-query: no packages found matching r-base-core dh_auto_configure -O--buildsystem=pybuild -O--system=distutils --sourcedirectory=. pybuild --configure -i python{version} -p 3.12 I: pybuild base:311: python3.12 setup.py config running config dh_auto_build -O--buildsystem=cmake -O--system=distutils --sourcedirectory=. cd obj-s390x-linux-gnu && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/<>/obj-s390x-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-s390x-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-s390x-linux-gnu/CMakeFiles /<>/obj-s390x-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/<>/obj-s390x-linux-gnu' make -f IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/build.make IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/depend make -f IsoSpec++/CMakeFiles/IsoSpec++-static.dir/build.make IsoSpec++/CMakeFiles/IsoSpec++-static.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/IsoSpec++ /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/IsoSpec++ /<>/obj-s390x-linux-gnu/IsoSpec++/CMakeFiles/IsoSpec++-static.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/IsoSpec++ /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/IsoSpec++ /<>/obj-s390x-linux-gnu/IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f IsoSpec++/CMakeFiles/IsoSpec++-static.dir/build.make IsoSpec++/CMakeFiles/IsoSpec++-static.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/build.make IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/build [ 25%] Building CXX object IsoSpec++/CMakeFiles/IsoSpec++-static.dir/unity-build.cpp.o make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu/IsoSpec++ && /usr/bin/c++ -I/<>/obj-s390x-linux-gnu/IsoSpec++ -I/<>/IsoSpec++ -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/isospec-2.2.1-4.1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -pedantic -MD -MT IsoSpec++/CMakeFiles/IsoSpec++-static.dir/unity-build.cpp.o -MF CMakeFiles/IsoSpec++-static.dir/unity-build.cpp.o.d -o CMakeFiles/IsoSpec++-static.dir/unity-build.cpp.o -c /<>/IsoSpec++/unity-build.cpp [ 50%] Building CXX object IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/unity-build.cpp.o cd /<>/obj-s390x-linux-gnu/IsoSpec++ && /usr/bin/c++ -DIsoSpec___shared_EXPORTS -I/<>/obj-s390x-linux-gnu/IsoSpec++ -I/<>/IsoSpec++ -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/isospec-2.2.1-4.1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -pedantic -MD -MT IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/unity-build.cpp.o -MF CMakeFiles/IsoSpec++-shared.dir/unity-build.cpp.o.d -o CMakeFiles/IsoSpec++-shared.dir/unity-build.cpp.o -c /<>/IsoSpec++/unity-build.cpp [ 75%] Linking CXX shared library libIsoSpec++.so cd /<>/obj-s390x-linux-gnu/IsoSpec++ && /usr/bin/cmake -E cmake_link_script CMakeFiles/IsoSpec++-shared.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/isospec-2.2.1-4.1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libIsoSpec++.so.2 -o libIsoSpec++.so.2.2.1 "CMakeFiles/IsoSpec++-shared.dir/unity-build.cpp.o" [100%] Linking CXX static library libIsoSpec++.a cd /<>/obj-s390x-linux-gnu/IsoSpec++ && /usr/bin/cmake -P CMakeFiles/IsoSpec++-static.dir/cmake_clean_target.cmake cd /<>/obj-s390x-linux-gnu/IsoSpec++ && /usr/bin/cmake -E cmake_link_script CMakeFiles/IsoSpec++-static.dir/link.txt --verbose=1 /usr/bin/ar qc libIsoSpec++.a "CMakeFiles/IsoSpec++-static.dir/unity-build.cpp.o" /usr/bin/ranlib libIsoSpec++.a make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [100%] Built target IsoSpec++-static cd /<>/obj-s390x-linux-gnu/IsoSpec++ && /usr/bin/cmake -E cmake_symlink_library libIsoSpec++.so.2.2.1 libIsoSpec++.so.2 libIsoSpec++.so make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [100%] Built target IsoSpec++-shared make[3]: Leaving directory '/<>/obj-s390x-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/obj-s390x-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/<>/obj-s390x-linux-gnu' dh_auto_configure -O--buildsystem=cmake -- \ -DCMAKE_INSTALL_PREFIX=/usr \ -DISOSPEC_LIB_VERSION=2.1.0 -DISOSPEC_LIB_SOVERSION=2 cd obj-s390x-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/s390x-linux-gnu -DCMAKE_INSTALL_PREFIX=/usr -DISOSPEC_LIB_VERSION=2.1.0 -DISOSPEC_LIB_SOVERSION=2 .. Configuring build for project IsoSpec -- CMAKE_CXX_COMPILER: /usr/bin/c++ -- Setting definition -Wno-unknown-pragmas. -- Setting definition -Wall. -- Setting definition -Wextra. -- Setting definition -pedantic. -- CMAKE_SOURCE_DIR: /<> -- CMAKE_BINARY_DIR: /<>/obj-s390x-linux-gnu UNIX non APPLE environment ~~~~~~ Instructions ~~~~~~ On UNIX/GNU-Linux, please run the configuration like this: cmake -G "Unix Makefiles" -DCMAKE_BUILD_TYPE= -DCMAKE_INSTALL_PREFIX= ../development -- Starting configuration for the doc material for IsoSpec  gm convert: Unable to read font (/usr/share/fonts/type1/gsfonts/n019003l.pfb). gm convert: Unable to read font (/usr/share/fonts/type1/gsfonts/n019003l.pfb). -- Finished configuration of the doc material. -- Starting configuration for the example material for IsoSpec  -- Finished configuration for the example material. The build toolchain is: Linux  -- CMAKE_BUILD_TYPE: None. -- CMAKE_INSTALL_PREFIX: /usr. "Now configuring IsoSpec++/ for IsoSpec" -- Configuring done (0.5s) -- Generating done (0.0s) -- Build files have been written to: /<>/obj-s390x-linux-gnu dh_auto_build -O--buildsystem=cmake cd obj-s390x-linux-gnu && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/<>/obj-s390x-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-s390x-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-s390x-linux-gnu/CMakeFiles /<>/obj-s390x-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/<>/obj-s390x-linux-gnu' make -f IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/build.make IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/depend make -f IsoSpec++/CMakeFiles/IsoSpec++-static.dir/build.make IsoSpec++/CMakeFiles/IsoSpec++-static.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/IsoSpec++ /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/IsoSpec++ /<>/obj-s390x-linux-gnu/IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/IsoSpec++ /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/IsoSpec++ /<>/obj-s390x-linux-gnu/IsoSpec++/CMakeFiles/IsoSpec++-static.dir/DependInfo.cmake "--color=" Dependencies file "IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/unity-build.cpp.o.d" is newer than depends file "/<>/obj-s390x-linux-gnu/IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target IsoSpec++-shared make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/build.make IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/build Dependencies file "IsoSpec++/CMakeFiles/IsoSpec++-static.dir/unity-build.cpp.o.d" is newer than depends file "/<>/obj-s390x-linux-gnu/IsoSpec++/CMakeFiles/IsoSpec++-static.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target IsoSpec++-static make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f IsoSpec++/CMakeFiles/IsoSpec++-static.dir/build.make IsoSpec++/CMakeFiles/IsoSpec++-static.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' make[4]: Nothing to be done for 'IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/build'. make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make[4]: Entering directory '/<>/obj-s390x-linux-gnu' make[4]: Nothing to be done for 'IsoSpec++/CMakeFiles/IsoSpec++-static.dir/build'. make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 50%] Built target IsoSpec++-static [100%] Built target IsoSpec++-shared make[3]: Leaving directory '/<>/obj-s390x-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/obj-s390x-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/<>/obj-s390x-linux-gnu' dh_auto_configure -O--buildsystem=cmake -- \ -DCMAKE_INSTALL_PREFIX=/usr \ -DISOSPEC_LIB_VERSION=2.1.0 -DISOSPEC_LIB_SOVERSION=2 cd obj-s390x-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/s390x-linux-gnu -DCMAKE_INSTALL_PREFIX=/usr -DISOSPEC_LIB_VERSION=2.1.0 -DISOSPEC_LIB_SOVERSION=2 .. Configuring build for project IsoSpec -- CMAKE_CXX_COMPILER: /usr/bin/c++ -- Setting definition -Wno-unknown-pragmas. -- Setting definition -Wall. -- Setting definition -Wextra. -- Setting definition -pedantic. -- CMAKE_SOURCE_DIR: /<> -- CMAKE_BINARY_DIR: /<>/obj-s390x-linux-gnu UNIX non APPLE environment ~~~~~~ Instructions ~~~~~~ On UNIX/GNU-Linux, please run the configuration like this: cmake -G "Unix Makefiles" -DCMAKE_BUILD_TYPE= -DCMAKE_INSTALL_PREFIX= ../development -- Starting configuration for the doc material for IsoSpec  gm convert: Unable to read font (/usr/share/fonts/type1/gsfonts/n019003l.pfb). gm convert: Unable to read font (/usr/share/fonts/type1/gsfonts/n019003l.pfb). -- Finished configuration of the doc material. -- Starting configuration for the example material for IsoSpec  -- Finished configuration for the example material. The build toolchain is: Linux  -- CMAKE_BUILD_TYPE: None. -- CMAKE_INSTALL_PREFIX: /usr. "Now configuring IsoSpec++/ for IsoSpec" -- Configuring done (0.6s) -- Generating done (0.0s) -- Build files have been written to: /<>/obj-s390x-linux-gnu # Generate the dev-doc in the man/hml and man/latex directories #doxygen man/doxyfile dh_auto_build -O--buildsyste=cmake -- html_doc cd obj-s390x-linux-gnu && make -j4 "INSTALL=install --strip-program=true" html_doc VERBOSE=1 make[2]: Entering directory '/<>/obj-s390x-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-s390x-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 html_doc make[3]: Entering directory '/<>/obj-s390x-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-s390x-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-s390x-linux-gnu/CMakeFiles 1 make -f CMakeFiles/Makefile2 man/CMakeFiles/html_doc.dir/all make[4]: Entering directory '/<>/obj-s390x-linux-gnu' make -f man/CMakeFiles/html_doc.dir/build.make man/CMakeFiles/html_doc.dir/depend make[5]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/man /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/man /<>/obj-s390x-linux-gnu/man/CMakeFiles/html_doc.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f man/CMakeFiles/html_doc.dir/build.make man/CMakeFiles/html_doc.dir/build make[5]: Entering directory '/<>/obj-s390x-linux-gnu' [100%] Doxygen-based developer html documentation generation cd /<>/man && doxygen doxyfile warning: Tag 'TCL_SUBST' at line 248 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: ignoring unsupported tag 'CLANG_COMPILATION_DATABASE_PATH' at line 1102, file doxyfile warning: Tag 'COLS_IN_ALPHA_INDEX' at line 1120 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'HTML_TIMESTAMP' at line 1256 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'FORMULA_TRANSPARENT' at line 1545 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'LATEX_SOURCE_CODE' at line 1833 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'LATEX_TIMESTAMP' at line 1849 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'RTF_SOURCE_CODE' at line 1915 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOCBOOK_PROGRAMLISTING' at line 2013 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'PERL_PATH' at line 2193 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'CLASS_DIAGRAMS' at line 2206 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'MSCGEN_PATH' at line 2215 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTNAME' at line 2257 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTSIZE' at line 2264 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_TRANSPARENT' at line 2488 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" Doxygen version used: 1.9.8 Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /<>/IsoSpec++ Reading and parsing tag files Parsing files Preprocessing /<>/IsoSpec++/allocator.cpp... Parsing file /<>/IsoSpec++/allocator.cpp... Preprocessing /<>/IsoSpec++/allocator.h... Parsing file /<>/IsoSpec++/allocator.h... Preprocessing /<>/IsoSpec++/btrd.h... Parsing file /<>/IsoSpec++/btrd.h... Preprocessing /<>/IsoSpec++/conf.h... Parsing file /<>/IsoSpec++/conf.h... Preprocessing /<>/IsoSpec++/cwrapper.cpp... Parsing file /<>/IsoSpec++/cwrapper.cpp... Preprocessing /<>/IsoSpec++/cwrapper.h... Parsing file /<>/IsoSpec++/cwrapper.h... Preprocessing /<>/IsoSpec++/dirtyAllocator.cpp... Parsing file /<>/IsoSpec++/dirtyAllocator.cpp... Preprocessing /<>/IsoSpec++/dirtyAllocator.h... Parsing file /<>/IsoSpec++/dirtyAllocator.h... Preprocessing /<>/IsoSpec++/element_tables.cpp... Parsing file /<>/IsoSpec++/element_tables.cpp... Preprocessing /<>/IsoSpec++/element_tables.h... Parsing file /<>/IsoSpec++/element_tables.h... Preprocessing /<>/IsoSpec++/fasta.cpp... Parsing file /<>/IsoSpec++/fasta.cpp... Preprocessing /<>/IsoSpec++/fasta.h... Parsing file /<>/IsoSpec++/fasta.h... Preprocessing /<>/IsoSpec++/fixedEnvelopes.cpp... Parsing file /<>/IsoSpec++/fixedEnvelopes.cpp... Preprocessing /<>/IsoSpec++/fixedEnvelopes.h... Parsing file /<>/IsoSpec++/fixedEnvelopes.h... Preprocessing /<>/IsoSpec++/isoMath.cpp... Parsing file /<>/IsoSpec++/isoMath.cpp... Preprocessing /<>/IsoSpec++/isoMath.h... Parsing file /<>/IsoSpec++/isoMath.h... Preprocessing /<>/IsoSpec++/isoSpec++.cpp... Parsing file /<>/IsoSpec++/isoSpec++.cpp... Preprocessing /<>/IsoSpec++/isoSpec++.h... Parsing file /<>/IsoSpec++/isoSpec++.h... Preprocessing /<>/IsoSpec++/marginalTrek++.cpp... Parsing file /<>/IsoSpec++/marginalTrek++.cpp... Preprocessing /<>/IsoSpec++/marginalTrek++.h... Parsing file /<>/IsoSpec++/marginalTrek++.h... Preprocessing /<>/IsoSpec++/misc.cpp... Parsing file /<>/IsoSpec++/misc.cpp... Preprocessing /<>/IsoSpec++/misc.h... Parsing file /<>/IsoSpec++/misc.h... Preprocessing /<>/IsoSpec++/mman.cpp... Parsing file /<>/IsoSpec++/mman.cpp... Preprocessing /<>/IsoSpec++/mman.h... Parsing file /<>/IsoSpec++/mman.h... Preprocessing /<>/IsoSpec++/operators.cpp... Parsing file /buil/<>/IsoSpec++/allocator.h:33: warning: Compound IsoSpec::Allocator is not documented. /<>/IsoSpec++/operators.h:53: warning: Compound IsoSpec::ConfEqual is not documented. /<>/IsoSpec++/operators.h:75: warning: Compound IsoSpec::ConfOrder is not documented. /<>/IsoSpec++/operators.h:87: warning: Compound IsoSpec::ConfOrderMarginal is not documented. /<>/IsoSpec++/operators.h:102: warning: Compound IsoSpec::ConfOrderMarginalDescending is not documented. /<>/IsoSpec++/dirtyAllocator.h:25: warning: Compound IsoSpec::DirtyAllocator is not documented. /<>/IsoSpec++/fixedEnvelopes.h:40: warning: Compound IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/isoSpec++.h:439: warning: Compound IsoSpec::IsoLayeredGenerator is not documented. /<>/IsoSpec++/isoSpec++.h:542: warning: Compound IsoSpec::IsoStochasticGenerator is not documented. /<>/IsoSpec++/operators.h:28: warning: Compound IsoSpec::KeyHasher is not documented. /<>/IsoSpec++/operators.h:141: warning: Compound IsoSpec::OrderMarginalsBySizeDecresing is not documented. /<>/IsoSpec++/conf.h:24: warning: Compound IsoSpec::ProbAndConfPtr is not documented. /<>/IsoSpec++/operators.h:117: warning: Compound IsoSpec::ReverseOrder is not documented. /<>/IsoSpec++/summator.h:26: warning: Compound IsoSpec::SSummator is not documented. /<>/IsoSpec++/summator.h:76: warning: Compound IsoSpec::Summator is not documented. /<>/IsoSpec++/summator.h:99: warning: Compound IsoSpec::TSummator is not documented. /<>/IsoSpec++/operators.h:124: warning: Compound IsoSpec::TableOrder is not documented. /<>/IsoSpec++/pod_vector.h:32: warning: Compound pod_vector is not documented. /<>/IsoSpec++/cwrapper.h:146: warning: Compound ws_match_res is not documented. /<>/IsoSpec++/marginalTrek++.h:386: warning: unable to resolve reference to 'PrecalculatedMarginal::get_eProb' for \ref command d/isospec-fGSO1O/isospec-2.2.1/IsoSpec++/operators.cpp... Preprocessing /<>/IsoSpec++/operators.h... Parsing file /<>/IsoSpec++/operators.h... Preprocessing /<>/IsoSpec++/platform.h... Parsing file /<>/IsoSpec++/platform.h... Preprocessing /<>/IsoSpec++/platform_incl.h... Parsing file /<>/IsoSpec++/platform_incl.h... Preprocessing /<>/IsoSpec++/pod_vector.h... Parsing file /<>/IsoSpec++/pod_vector.h... Preprocessing /<>/IsoSpec++/python-build.cpp... Parsing file /<>/IsoSpec++/python-build.cpp... Preprocessing /<>/IsoSpec++/summator.h... Parsing file /<>/IsoSpec++/summator.h... Preprocessing /<>/IsoSpec++/unity-build.cpp... Parsing file /<>/IsoSpec++/unity-build.cpp... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Building concept list... Computing nesting relations for classes... Associating documentation with classes... Associating documentation with concepts... Associating documentation with modules... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Computing module relations... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating code for file /<>/IsoSpec++/allocator.cpp... Generating code for file /<>/IsoSpec++/allocator.h... Generating code for file /<>/IsoSpec++/btrd.h... Generating code for file /<>/IsoSpec++/conf.h... Generating code for file /<>/IsoSpec++/cwrapper.cpp... Generating code for file /<>/IsoSpec++/cwrapper.h... Generating code for file /<>/IsoSpec++/dirtyAllocator.cpp... Generating code for file /<>/IsoSpec++/dirtyAllocator.h... Generating code for file /<>/IsoSpec++/element_tables.cpp... Generating code for file /<>/IsoSpec++/element_tables.h... Generating code for file /<>/IsoSpec++/fasta.cpp... Generating code for file /<>/isos/<>/IsoSpec++/pod_vector.h:194: warning: Member iterator (typedef) of class pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:195: warning: Member const_iterator (typedef) of class pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:196: warning: Member value_type (typedef) of class pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:197: warning: Member size_type (typedef) of class pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:198: warning: Member reference (typedef) of class pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:199: warning: Member const_reference (typedef) of class pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:39: warning: Member pod_vector(size_t initial_size=16) (function) of class pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:54: warning: Member operator=(pod_vector< T > &&other) (function) of class pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:64: warning: Member pod_vector(pod_vector< T > &&other) (function) of class pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:74: warning: Member pod_vector(unsafe_pod_vector< T > &&other) (function) of class pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:82: warning: Member fast_reserve(size_t n) (function) of class pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:94: warning: Member reserve(size_t n) (function) of class pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:100: warning: Member resize(size_t new_size) (function) of class pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:114: warning: Member resize_and_wipe(size_t new_size) (function) of class pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:122: warning: Member nocheck_push_back(const T &val) noexcept (function) of class pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:129: warning: Member push_back(const T &val) (function) of class pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:137: warning: Member operator[](size_t n) noexcept (function) of class pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:143: warning: Member operator[](size_t n) const noexcept (function) of class pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:149: warning: Member size() const noexcept (function) of class pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:154: warning: Member capacity() const noexcept (function) of class pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:159: warning: Member data() noexcept (function) of class pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:164: warning: Member data() const noexcept (function) of class pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:169: warning: Member empty() const noexcept (function) of class pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:174: warning: Member back() const noexcept (function) of class pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:180: warning: Member pop_back() noexcept (function) of class pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:187: warning: Member swap(pod_vector< T > &other) noexcept (function) of class pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:201: warning: Member begin() noexcept (function) of class pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:202: warning: Member begin() const noexcept (function) of class pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:203: warning: Member cbegin() const noexcept (function) of class pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:204: warning: Member end() noexcept (function) of class pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:205: warning: Member end() const noexcept (function) of class pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:206: warning: Member cend() const noexcept (function) of class pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:208: warning: Member front() const noexcept (function) of class pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:214: warning: Member clear() (function) of class pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:372: warning: Member iterator (typedef) of class unsafe_pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:373: warning: Member const_iterator (typedef) of class unsafe_pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:374: warning: Member value_type (typedef) of class unsafe_pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:375: warning: Member size_type (typedef) of class unsafe_pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:376: warning: Member reference (typedef) of class unsafe_pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:377: warning: Member const_reference (typedef) of class unsafe_pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:234: warning: Member init() (function) of class unsafe_pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:242: warning: Member init(size_t initial_size) (function) of class unsafe_pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:261: warning: Member fast_reserve(size_t n) (function) of class unsafe_pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:272: warning: Member reserve(size_t n) (function) of class unsafe_pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:278: warning: Member resize(size_t new_size) (function) of class unsafe_pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:292: warning: Member resize_and_wipe(size_t new_size) (function) of class unsafe_pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:300: warning: Member nocheck_push_back(const T &val) noexcept (function) of class unsafe_pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:307: warning: Member push_back(const T &val) (function) of class unsafe_pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:315: warning: Member operator[](size_t n) noexcept (function) of class unsafe_pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:321: warning: Member operator[](size_t n) const noexcept (function) of class unsafe_pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:327: warning: Member size() const noexcept (function) of class unsafe_pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:332: warning: Member capacity() const noexcept (function) of class unsafe_pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:337: warning: Member data() noexcept (function) of class unsafe_pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:342: warning: Member data() const noexcept (function) of class unsafe_pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:347: warning: Member empty() const noexcept (function) of class unsafe_pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:352: warning: Member back() const noexcept (function) of class unsafe_pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:358: warning: Member pop_back() noexcept (function) of class unsafe_pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:365: warning: Member swap(pod_vector< T > &other) noexcept (function) of class unsafe_pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:379: warning: Member begin() noexcept (function) of class unsafe_pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:380: warning: Member begin() const noexcept (function) of class unsafe_pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:381: warning: Member cbegin() const noexcept (function) of class unsafe_pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:382: warning: Member end() noexcept (function) of class unsafe_pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:383: warning: Member end() const noexcept (function) of class unsafe_pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:384: warning: Member cend() const noexcept (function) of class unsafe_pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:386: warning: Member front() const noexcept (function) of class unsafe_pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:392: warning: Member clear() (function) of class unsafe_pod_vector is not documented. /<>/IsoSpec++/cwrapper.h:147: warning: Member res1 (variable) of struct ws_match_res is not documented. /<>/IsoSpec++/cwrapper.h:148: warning: Member res2 (variable) of struct ws_match_res is not documented. /<>/IsoSpec++/cwrapper.h:149: warning: Member flow (variable) of struct ws_match_res is not documented. /<>/IsoSpec++/btrd.h:27: warning: Member RealType (typedef) of namespace IsoSpec is not documented. /<>/IsoSpec++/btrd.h:28: warning: Member IntType (typedef) of namespace IsoSpec is not documented. /<>/IsoSpec++/conf.h:22: warning: Member Conf (typedef) of namespace IsoSpec is not documented. /<>/IsoSpec++/allocator.h:26: warning: Member copyConf(const T *source, T *destination, int dim) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/btrd.h:77: warning: Member btrd(IntType _t, RealType p, IntType m, std::mt19937 &urng=random_gen) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/btrd.h:160: warning: Member invert(IntType t, RealType p, std::mt19937 &urng=random_gen) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/btrd.h:189: warning: Member boost_binomial_distribution_variate(IntType t_arg, RealType p_arg, std::mt19937 &urng=random_gen) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/fasta.h:33: warning: Member parse_fasta(const char *fasta, int atomCounts[6]) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/fixedEnvelopes.cpp:134: warning: Member reorder_array(T *arr, size_t *order, size_t size, bool can_destroy=false) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/fixedEnvelopes.h:37: warning: Member AbyssalWassersteinDistanceGrad(FixedEnvelope *const *envelopes, const double *scales, double *ret_gradient, size_t N, double abyss_depth_exp, double abyss_depth_the) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/isoMath.cpp:23: warning: Member release_g_lfact_table() (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/isoMath.cpp:32: warning: Member alloc_lfact_table() (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/isoMath.cpp:47: warning: Member RationalApproximation(double t) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/isoMath.cpp:57: warning: Member NormalCDFInverse(double p) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/isoMath.cpp:65: warning: Member NormalCDFInverse(double p, double mean, double stdev) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/isoMath.cpp:70: warning: Member NormalCDF(double x, double mean, double stdev) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/isoMath.cpp:95: warning: Member NormalPDF(double x, double mean, double stdev) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/isoMath.cpp:104: warning: Member LowerIncompleteGamma2(int a, double x) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/isoMath.cpp:131: warning: Member InverseLowerIncompleteGamma2(int a, double x) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/isoMath.cpp:150: warning: Member random_gen(random_dev()) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/isoMath.cpp:151: warning: Member stdunif(0.0, 1.0) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/isoMath.cpp:153: warning: Member rdvariate_binom(size_t tries, double succ_prob, std::mt19937 &rgen) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/isoMath.h:68: warning: Member InverseChiSquareCDF2(int k, double x) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/isoMath.h:76: warning: Member rdvariate_beta_1_b(double b, std::mt19937 &rgen=random_gen) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/isoSpec++.cpp:355: warning: Member parse_formula(const char *formula, std::vector< double > &isotope_masses, std::vector< double > &isotope_probabilities, int **isotopeNumbers, int **atomCounts, unsigned int *confSize, bool use_nominal_masses) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/marginalTrek++.cpp:149: warning: Member get_loggamma_nominator(int x) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/marginalTrek++.cpp:156: warning: Member verify_atom_cnt(int atomCnt) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/misc.cpp:28: warning: Member quickselect(void **array, int n, int start, int end) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/misc.h:29: warning: Member combinedSum(const int *conf, const std::vector< double > **valuesContainer, int dimNumber) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/misc.h:38: warning: Member combinedSum(const int *conf, const pod_vector< double > **valuesContainer, int dimNumber) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/misc.h:47: warning: Member getConf(void *conf) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/misc.h:54: warning: Member getLProb(void *conf) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/misc.h:61: warning: Member unnormalized_logProb(const int *conf, const double *logProbs, int dim) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/misc.h:71: warning: Member calc_mass(const int *conf, const double *masses, int dim) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/misc.h:85: warning: Member printArray(const T *array, int size, const char *prefix="") (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/misc.h:94: warning: Member printVector(const std::vector< T > &vec) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/misc.h:99: warning: Member printOffsets(const T **array, int size, const T *offset, const char *prefix="") (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/misc.h:108: warning: Member printNestedArray(const T **array, const int *shape, int size) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/misc.h:133: warning: Member dealloc_table(T *tbl, int dim) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/misc.h:142: warning: Member realloc_append(T **array, T what, size_t old_array_size) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/misc.h:151: warning: Member get_order(T *order_array, size_t N) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/misc.h:162: warning: Member get_inverse_order(T *order_array, size_t N) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/misc.h:173: warning: Member impose_order(size_t *O, size_t N, TA *A, TB *B) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/element_tables.cpp:26: warning: Member isospec_number_of_isotopic_entries (variable) of namespace IsoSpec is not documented. /<>/IsoSpec++/element_tables.cpp:28: warning: Member elem_table_ID[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented. /<>/IsoSpec++/element_tables.cpp:325: warning: Member elem_table_atomicNo[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented. /<>/IsoSpec++/element_tables.cpp:621: warning: Member elem_table_mass[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented. /<>/IsoSpec++/element_tables.cpp:917: warning: Member elem_table_massNo[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented. /<>/IsoSpec++/element_tables.cpp:1213: warning: Member elem_table_extraNeutrons[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented. /<>/IsoSpec++/element_tables.cpp:1509: warning: Member elem_table_element[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented. /<>/IsoSpec++/element_tables.cpp:1805: warning: Member elem_table_symbol[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented. /<>/IsoSpec++/element_tables.cpp:2101: warning: Member elem_table_Radioactive[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented. /<>/IsoSpec++/element_tables.cpp:2397: warning: Member elem_table_probability[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented. /<>/IsoSpec++/element_tables.cpp:2693: warning: Member elem_table_log_probability[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented. /<>/IsoSpec++/fasta.cpp:25: warning: Member aa_isotope_numbers[6] (variable) of namespace IsoSpec is not documented. /<>/IsoSpec++/fasta.cpp:27: warning: Member aa_elem_masses[19] (variable) of namespace IsoSpec is not documented. /<>/IsoSpec++/fasta.cpp:37: warning: Member aa_elem_nominal_masses[19] (variable) of namespace IsoSpec is not documented. /<>/IsoSpec++/fasta.cpp:47: warning: Member aa_elem_probabilities[19] (variable) of namespace IsoSpec is not documented. /<>/IsoSpec++/fasta.cpp:57: warning: Member aa_symbol_to_elem_counts[256 *6] (variable) of namespace IsoSpec is not documented. /<>/IsoSpec++/isoMath.cpp:44: warning: Member g_lfact_table (variable) of namespace IsoSpec is not documented. /<>/IsoSpec++/isoMath.cpp:102: warning: Member sqrt_pi (variable) of namespace IsoSpec is not documented. /<>/IsoSpec++/isoMath.cpp:149: warning: Member random_dev (variable) of namespace IsoSpec is not documented. /<>/IsoSpec++/isoMath.h:53: warning: Member pi (variable) of namespace IsoSpec is not documented. /<>/IsoSpec++/isoMath.h:54: warning: Member logpi (variable) of namespace IsoSpec is not documented. /<>/IsoSpec++/isoMath.h:73: warning: Member random_gen (variable) of namespace IsoSpec is not documented. /<>/IsoSpec++/isoMath.h:74: warning: Member stdunif (variable) of namespace IsoSpec is not documented. /<>/IsoSpec++/marginalTrek++.cpp:53: warning: The following parameters of IsoSpec::writeInitialConfiguration(const int atomCnt, const int isotopeNo, const double *lprobs, int *res) are not documented: parameter 'isotopeNo' parameter 'lprobs' parameter 'res' /<>/IsoSpec++/allocator.h:42: warning: Member Allocator(const int dim, const int tabSize=10000) (function) of class IsoSpec::Allocator is not documented. /<>/IsoSpec++/allocator.h:48: warning: Member shiftTables() (function) of class IsoSpec::Allocator is not documented. /<>/IsoSpec++/allocator.h:50: warning: Member newConf() (function) of class IsoSpec::Allocator is not documented. /<>/IsoSpec++/allocator.h:60: warning: Member makeCopy(const T *conf) (function) of class IsoSpec::Allocator is not documented. /<>/IsoSpec++/operators.h:59: warning: Member ConfEqual(int dim) (function) of class IsoSpec::ConfEqual is not documented. /<>/IsoSpec++/operators.h:61: warning: Member operator()(const int *conf1, const int *conf2) const (function) of class IsoSpec::ConfEqual is not documented. /<>/IsoSpec++/operators.h:79: warning: Member operator()(void *conf1, void *conf2) const (function) of class IsoSpec::ConfOrder is not documented. /<>/IsoSpec++/operators.h:93: warning: Member ConfOrderMarginal(const double *logProbs, int dim) (function) of class IsoSpec::ConfOrderMarginal is not documented. /<>/IsoSpec++/operators.h:95: warning: Member operator()(const Conf conf1, const Conf conf2) (function) of class IsoSpec::ConfOrderMarginal is not documented. /<>/IsoSpec++/operators.h:108: warning: Member ConfOrderMarginalDescending(const double *logProbs, int dim) (function) of class IsoSpec::ConfOrderMarginalDescending is not documented. /<>/IsoSpec++/operators.h:110: warning: Member operator()(const Conf conf1, const Conf conf2) (function) of class IsoSpec::ConfOrderMarginalDescending is not documented. /<>/IsoSpec++/dirtyAllocator.h:36: warning: Member DirtyAllocator(const int dim, const int tabSize=10000) (function) of class IsoSpec::DirtyAllocator is not documented. /<>/IsoSpec++/dirtyAllocator.h:42: warning: Member shiftTables() (function) of class IsoSpec::DirtyAllocator is not documented. /<>/IsoSpec++/dirtyAllocator.h:44: warning: Member newConf() (function) of class IsoSpec::DirtyAllocator is not documented. /<>/IsoSpec++/fixedEnvelopes.h:70: warning: Member FixedEnvelope(const FixedEnvelope &other) (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:71: warning: Member FixedEnvelope(FixedEnvelope &&other) (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:73: warning: Member FixedEnvelope(double *masses, double *probs, size_t confs_no, bool masses_sorted=false, bool probs_sorted=false, double _total_prob=NAN) (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:82: warning: Member operator+(const FixedEnvelope &other) const (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:83: warning: Member operator*(const FixedEnvelope &other) const (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:85: warning: Member confs_no() const (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:86: warning: Member getAllDim() const (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:88: warning: Member masses() const (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:89: warning: Member probs() const (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:90: warning: Member confs() const (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:92: warning: Member release_masses() (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:93: warning: Member release_probs() (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:94: warning: Member release_confs() (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:95: warning: Member release_everything() (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:98: warning: Member mass(size_t i) const (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:99: warning: Member prob(size_t i) const (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:100: warning: Member conf(size_t i) const (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:102: warning: Member sort_by_mass() (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:103: warning: Member sort_by_prob() (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:105: warning: Member get_total_prob() (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:106: warning: Member scale(double factor) (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:107: warning: Member normalize() (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:108: warning: Member shift_mass(double shift) (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:109: warning: Member resample(size_t ionic_current, double beta_bias=1.0) (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:111: warning: Member empiric_average_mass() (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:112: warning: Member empiric_variance() (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:113: warning: Member empiric_stddev() (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:115: warning: Member WassersteinDistance(FixedEnvelope &other) (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:116: warning: Member OrientedWassersteinDistance(FixedEnvelope &other) (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:117: warning: Member AbyssalWassersteinDistance(FixedEnvelope &other, double abyss_depth, double other_scale=1.0) (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:118: warning: Member WassersteinMatch(FixedEnvelope &other, double flow_distance, double other_scale=1.0) (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:125: warning: Member bin(double bin_width=1.0, double middle=0.0) (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:170: warning: Member threshold_init(Iso &&iso, double threshold, bool absolute) (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:172: warning: Member addConfILG(const GenType &generator) (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:181: warning: Member total_prob_init(Iso &&iso, double target_prob, bool trim) (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:216: warning: Member stochastic_init(Iso &&iso, size_t _no_molecules, double _precision, double _beta_bias) (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:121: warning: Member LinearCombination(const std::vector< const FixedEnvelope * > &spectra, const std::vector< double > &intensities) (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:122: warning: Member LinearCombination(const FixedEnvelope *const *spectra, const double *intensities, size_t size) (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:183: warning: Member FromThreshold(Iso &&iso, double threshold, bool absolute, bool tgetConfs=false) (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:194: warning: Member FromThreshold(const Iso &iso, double _threshold, bool _absolute, bool tgetConfs=false) (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:199: warning: Member FromTotalProb(Iso &&iso, double target_total_prob, bool optimize, bool tgetConfs=false) (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:211: warning: Member FromTotalProb(const Iso &iso, double _target_total_prob, bool _optimize, bool tgetConfs=false) (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:218: warning: Member FromStochastic(Iso &&iso, size_t _no_molecules, double _precision=0.9999, double _beta_bias=5.0, bool tgetConfs=false) (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:230: warning: Member FromStochastic(const Iso &iso, size_t _no_molecules, double _precision=0.9999, double _beta_bias=5.0, bool tgetConfs=false) (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:235: warning: Member Binned(Iso &&iso, double target_total_prob, double bin_width, double bin_middle=0.0) (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:236: warning: Member Binned(const Iso &iso, double target_total_prob, double bin_width, double bin_middle=0.0) (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:132: warning: Member store_conf(const T &generator) (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:139: warning: Member store_conf(double _mass, double _prob) (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:152: warning: Member swap(size_t idx1, size_t idx2, ISOSPEC_MAYBE_UNUSED int *conf_swapspace) (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:166: warning: Member reallocate_memory(size_t new_size) (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:167: warning: Member slow_reallocate_memory(size_t new_size) (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:42: warning: Member _masses (variable) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:43: warning: Member _probs (variable) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:44: warning: Member _confs (variable) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:45: warning: Member _confs_no (variable) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:46: warning: Member allDim (variable) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:47: warning: Member sorted_by_mass (variable) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:48: warning: Member sorted_by_prob (variable) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:49: warning: Member total_prob (variable) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:50: warning: Member current_size (variable) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:51: warning: Member tmasses (variable) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:52: warning: Member tprobs (variable) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:53: warning: Member tconfs (variable) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:54: warning: Member allDimSizeofInt (variable) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:241: warning: Member AbyssalWassersteinDistanceGrad(FixedEnvelope *const *envelopes, const double *scales, double *ret_gradient, size_t N, double abyss_depth_exp, double abyss_depth_the) (friend) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/isoSpec++.h:90: warning: Member Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) (function) of class IsoSpec::Iso is not documented. /<>/IsoSpec++/isoSpec++.h:70: warning: Member doMarginalsNeedSorting() const (function) of class IsoSpec::Iso is not documented. /<>/IsoSpec++/isoSpec++.h:110: warning: Found unknown command '\use_nominal_masses' /<>/IsoSpec++/isoSpec++.h:111: warning: Found unknown command '\add_water' /<>/IsoSpec++/isoSpec++.h:106: warning: The following parameters of IsoSpec::Iso::FromFASTA(const char *fasta, bool use_nominal_masses=false, bool add_water=true) are not documented: parameter 'use_nominal_masses' parameter 'add_water' /<>/IsoSpec++/isoSpec++.h:90: warning: Member Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) (function) of class IsoSpec::Iso is not documented. /<>/IsoSpec++/isoSpec++.h:186: warning: Member mode_lprob (variable) of class IsoSpec::IsoGenerator is not documented. /<>/IsoSpec++/isoSpec++.h:70: warning: Member doMarginalsNeedSorting() const (function) of class IsoSpec::Iso is not documented. /<>/IsoSpec++/isoSpec++.h:483: warning: Member get_currentLThreshold() const (function) of class IsoSpec::IsoLayeredGenerator is not documented. /<>/IsoSpec++/isoSpec++.h:485: warning: Member IsoLayeredGenerator(Iso &&iso, int _tabSize=1000, int _hashSize=1000, bool reorder_marginals=true, double t_prob_hint=0.99) (function) of class IsoSpec::IsoLayeredGenerator is not documented. /<>/IsoSpec++/isoSpec++.h:499: warning: Member advanceToNextConfigurationWithinLayer() (function) of class IsoSpec::IsoLayeredGenerator is not documented. /<>/IsoSpec++/isoSpec++.h:534: warning: Member nextLayer(double offset) (function) of class IsoSpec::IsoLayeredGenerator is not documented. /<>/IsoSpec++/isoSpec++.h:90: warning: Member Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) (function) of class IsoSpec::Iso is not documented. /<>/IsoSpec++/isoSpec++.h:186: warning: Member mode_lprob (variable) of class IsoSpec::IsoGenerator is not documented. /<>/IsoSpec++/isoSpec++.h:70: warning: Member doMarginalsNeedSorting() const (function) of class IsoSpec::Iso is not documented. /<>/IsoSpec++/isoSpec++.h:90: warning: Member Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) (function) of class IsoSpec::Iso is not documented. /<>/IsoSpec++/isoSpec++.h:186: warning: Member mode_lprob (variable) of class IsoSpec::IsoGenerator is not documented. /<>/IsoSpec++/isoSpec++.h:70: warning: Member doMarginalsNeedSorting() const (function) of class IsoSpec::Iso is not documented. /<>/IsoSpec++/isoSpec++.h:553: warning: Member IsoStochasticGenerator(Iso &&iso, size_t no_molecules, double precision=0.9999, double beta_bias=5.0) (function) of class IsoSpec::IsoStochasticGenerator is not documented. /<>/IsoSpec++/isoSpec++.h:555: warning: Member count() const (function) of class IsoSpec::IsoStochasticGenerator is not documented. /<>/IsoSpec++/isoSpec++.h:90: warning: Member Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) (function) of class IsoSpec::Iso is not documented. /<>/IsoSpec++/isoSpec++.h:186: warning: Member mode_lprob (variable) of class IsoSpec::IsoGenerator is not documented. /<>/IsoSpec++/isoSpec++.h:70: warning: Member doMarginalsNeedSorting() const (function) of class IsoSpec::Iso is not documented. /<>/IsoSpec++/isoSpec++.h:90: warning: Member Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) (function) of class IsoSpec::Iso is not documented. /<>/IsoSpec++/isoSpec++.h:186: warning: Member mode_lprob (variable) of class IsoSpec::IsoGenerator is not documented. /<>/IsoSpec++/isoSpec++.h:70: warning: Member doMarginalsNeedSorting() const (function) of class IsoSpec::Iso is not documented. /<>/IsoSpec++/isoSpec++.h:339: warning: argument 'tabSize' of command @param is not found in the argument list of IsoSpec::IsoThresholdGenerator::IsoThresholdGenerator(Iso &&iso, double _threshold, bool _absolute=true, int _tabSize=1000, int _hashSize=1000, bool reorder_marginals=true) /<>/IsoSpec++/isoSpec++.h:339: warning: argument 'hashSize' of command @param is not found in the argument list of IsoSpec::IsoThresholdGenerator::IsoThresholdGenerator(Iso &&iso, double _threshold, bool _absolute=true, int _tabSize=1000, int _hashSize=1000, bool reorder_marginals=true) /<>/IsoSpec++/isoSpec++.h:339: warning: The following parameters of IsoSpec::IsoThresholdGenerator::IsoThresholdGenerator(Iso &&iso, double _threshold, bool _absolute=true, int _tabSize=1000, int _hashSize=1000, bool reorder_marginals=true) are not documented: parameter '_tabSize' parameter '_hashSize' parameter 'reorder_marginals' /<>/IsoSpec++/operators.h:34: warning: Member KeyHasher(int dim) (function) of class IsoSpec::KeyHasher is not documented. /<>/IsoSpec++/operators.h:36: warning: Member operator()(const int *conf) const noexcept (function) of class IsoSpec::KeyHasher is not documented. /<>/IsoSpec++/marginalTrek++.h:386: warning: unable to resolve reference to 'PrecalculatedMarginal::get_eProb' for \ref command /<>/IsoSpec++/marginalTrek++.h:90: warning: Member get_lProbs() const (function) of class IsoSpec::Marginal is not documented. /<>/IsoSpec++/marginalTrek++.h:168: warning: Member ensureModeConf() (function) of class IsoSpec::Marginal is not documented. /<>/IsoSpec++/marginalTrek++.h:160: warning: Member logProb(Conf conf) const (function) of class IsoSpec::Marginal is not documented. /<>/IsoSpec++/marginalTrek++.h:368: warning: The following parameter of IsoSpec::LayeredMarginal::LayeredMarginal(Marginal &&m, int tabSize=1000, int hashSize=1000) is not documented: parameter 'm' /<>/IsoSpec++/marginalTrek++.h:378: warning: The following parameter of IsoSpec::LayeredMarginal::extend(double new_threshold, bool do_sort=true) is not documented: parameter 'do_sort' /<>/IsoSpec++/marginalTrek++.h:386: warning: unable to resolve reference to 'PrecalculatedMarginal::get_eProb' for \ref command /<>/IsoSpec++/marginalTrek++.h:90: warning: Member get_lProbs() const (function) of class IsoSpec::Marginal is not documented. /<>/IsoSpec++/marginalTrek++.h:168: warning: Member ensureModeConf() (function) of class IsoSpec::Marginal is not documented. /<>/IsoSpec++/marginalTrek++.h:160: warning: Member logProb(Conf conf) const (function) of class IsoSpec::Marginal is not documented. /<>/IsoSpec++/marginalTrek++.h:59: warning: found documented return type for IsoSpec::Marginal::Marginal that does not return anything /<>/IsoSpec++/marginalTrek++.h:233: warning: Member conf_lprobs() const (function) of class IsoSpec::MarginalTrek is not documented. /<>/IsoSpec++/marginalTrek++.h:234: warning: Member conf_masses() const (function) of class IsoSpec::MarginalTrek is not documented. /<>/IsoSpec++/marginalTrek++.h:235: warning: Member confs() const (function) of class IsoSpec::MarginalTrek is not documented. /<>/IsoSpec++/marginalTrek++.h:90: warning: Member get_lProbs() const (function) of class IsoSpec::Marginal is not documented. /<>/IsoSpec++/marginalTrek++.h:168: warning: Member ensureModeConf() (function) of class IsoSpec::Marginal is not documented. /<>/IsoSpec++/marginalTrek++.h:160: warning: Member logProb(Conf conf) const (function) of class IsoSpec::Marginal is not documented. /<>/IsoSpec++/marginalTrek++.h:199: warning: The following parameter of IsoSpec::MarginalTrek::MarginalTrek(Marginal &&m, int tabSize=1000, int hashSize=1000) is not documented: parameter 'm' /<>/IsoSpec++/operators.h:145: warning: Member OrderMarginalsBySizeDecresing(T const *const *const MT_) (function) of class IsoSpec::OrderMarginalsBySizeDecresing is not documented. /<>/IsoSpec++/operators.h:146: warning: Member operator()(int m1, int m2) (function) of class IsoSpec::OrderMarginalsBySizeDecresing is not documented. /<>/IsoSpec++/marginalTrek++.h:90: warning: Member get_lProbs() const (function) of class IsoSpec::Marginal is not documented. /<>/IsoSpec++/marginalTrek++.h:168: warning: Member ensureModeConf() (function) of class IsoSpec::Marginal is not documented. /<>/IsoSpec++/marginalTrek++.h:254: warning: Member configurations (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /<>/IsoSpec++/marginalTrek++.h:255: warning: Member confs (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /<>/IsoSpec++/marginalTrek++.h:256: warning: Member no_confs (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /<>/IsoSpec++/marginalTrek++.h:257: warning: Member masses (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /<>/IsoSpec++/marginalTrek++.h:258: warning: Member lProbs (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /<>/IsoSpec++/marginalTrek++.h:259: warning: Member probs (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /<>/IsoSpec++/marginalTrek++.h:260: warning: Member allocator (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /<>/IsoSpec++/marginalTrek++.h:160: warning: Member logProb(Conf conf) const (function) of class IsoSpec::Marginal is not documented. /<>/IsoSpec++/marginalTrek++.h:264: warning: argument 'Marginal' of command @param is not found in the argument list of IsoSpec::PrecalculatedMarginal::PrecalculatedMarginal(Marginal &&m, double lCutOff, bool sort=true, int tabSize=1000, int hashSize=1000) /<>/IsoSpec++/marginalTrek++.h:264: warning: The following parameters of IsoSpec::PrecalculatedMarginal::PrecalculatedMarginal(Marginal &&m, double lCutOff, bool sort=true, int tabSize=1000, int hashSize=1000) are not documented: parameter 'm' parameter 'tabSize' parameter 'hashSize' /<>/IsoSpec++/marginalTrek++.h:264: warning: found documented return type for IsoSpec::PrecalculatedMarginal::PrecalculatedMarginal that does not return anything /<>/IsoSpec++/conf.h:30: warning: Member ProbAndConfPtr(double p, Conf c) (function) of struct IsoSpec::ProbAndConfPtr is not documented. /<>/IsoSpec++/conf.h:32: warning: Member operator<(const ProbAndConfPtr &other) const (function) of struct IsoSpec::ProbAndConfPtr is not documented. /<>/IsoSpec++/conf.h:27: warning: Member first (variable) of struct IsoSpec::ProbAndConfPtr is not documented. /<>/IsoSpec++/conf.h:28: warning: Member second (variable) of struct IsoSpec::ProbAndConfPtr is not documented. /<>/IsoSpec++/operators.h:121: warning: Member operator()(const T a, const T b) const (function) of class IsoSpec::ReverseOrder is not documented. /<>/IsoSpec++/summator.h:35: warning: Member SSummator(const SSummator &other) (function) of class IsoSpec::SSummator is not documented. /<>/IsoSpec++/summator.h:39: warning: Member add(double x) (function) of class IsoSpec::SSummator is not documented. /<>/IsoSpec++/summator.h:61: warning: Member get() (function) of class IsoSpec::SSummator is not documented. /<>/IsoSpec++/summator.h:85: warning: Member add(double what) (function) of class IsoSpec::Summator is not documented. /<>/IsoSpec++/summator.h:93: warning: Member get() (function) of class IsoSpec::Summator is not documented. /<>/IsoSpec++/operators.h:128: warning: Member TableOrder(const T *_tbl) (function) of class IsoSpec::TableOrder is not documented. /<>/IsoSpec++/operators.h:129: warning: Member operator()(unsigned int i, unsigned int j) (function) of class IsoSpec::TableOrder is not documented. /<>/IsoSpec++/summator.h:107: warning: Member add(double what) (function) of class IsoSpec::TSummator is not documented. /<>/IsoSpec++/summator.h:111: warning: Member get() (function) of class IsoSpec::TSummator is not documented. pec-2.2.1/IsoSpec++/fasta.h... Generating code for file /<>/IsoSpec++/fixedEnvelopes.cpp... Generating code for file /<>/IsoSpec++/fixedEnvelopes.h... Generating code for file /<>/IsoSpec++/isoMath.cpp... Generating code for file /<>/IsoSpec++/isoMath.h... Generating code for file /<>/IsoSpec++/isoSpec++.cpp... Generating code for file /<>/IsoSpec++/isoSpec++.h... Generating code for file /<>/IsoSpec++/marginalTrek++.cpp... Generating code for file /<>/IsoSpec++/marginalTrek++.h... Generating code for file /<>/IsoSpec++/misc.cpp... Generating code for file /<>/IsoSpec++/misc.h... Generating code for file /<>/IsoSpec++/mman.cpp... Generating code for file /<>/IsoSpec++/mman.h... Generating code for file /<>/IsoSpec++/operators.cpp... Generating code for file /<>/IsoSpec++/operators.h... Generating code for file /<>/IsoSpec++/platform.h... Generating code for file /<>/IsoSpec++/platform_incl.h... Generating code for file /<>/IsoSpec++/pod_vector.h... Generating code for file /<>/IsoSpec++/python-build.cpp... Generating code for file /<>/IsoSpec++/summator.h... Generating code for file /<>/IsoSpec++/unity-build.cpp... Generating file documentation... Generating page documentation... Generating group documentation... Generating class documentation... Generating docs for compound pod_vector... Generating docs for compound unsafe_pod_vector... Generating docs for compound ws_match_res... Generating concept documentation... Generating module documentation... Generating namespace documentation... Generating docs for namespace IsoSpec Generating docs for compound IsoSpec::Allocator... Generating docs for compound IsoSpec::ConfEqual... Generating docs for compound IsoSpec::ConfOrder... Generating docs for compound IsoSpec::ConfOrderMarginal... Generating docs for compound IsoSpec::ConfOrderMarginalDescending... Generating docs for compound IsoSpec::DirtyAllocator... Generating docs for compound IsoSpec::FixedEnvelope... Generating docs for compound IsoSpec::Iso... Generating docs for compound IsoSpec::IsoGenerator... Generating docs for compound IsoSpec::IsoLayeredGenerator... Generating docs for compound IsoSpec::IsoOrderedGenerator... Generating docs for compound IsoSpec::IsoStochasticGenerator... Generating docs for compound IsoSpec::IsoThresholdGenerator... Generating docs for compound IsoSpec::KeyHasher... Generating docs for compound IsoSpec::LayeredMarginal... Generating docs for compound IsoSpec::Marginal... Generating docs for compound IsoSpec::MarginalTrek... Generating docs for compound IsoSpec::OrderMarginalsBySizeDecresing... Generating docs for compound IsoSpec::PrecalculatedMarginal... Generating docs for compound IsoSpec::ProbAndConfPtr... Generating docs for compound IsoSpec::ReverseOrder... Generating docs for compound IsoSpec::SSummator... Generating docs for compound IsoSpec::Summator... Generating docs for compound IsoSpec::TableOrder... Generating docs for compound IsoSpec::TSummator... Generating graph info page... Generating directory documentation... Generating index page... Generating page index... Generating topic index... Generating module index... Generating module member index... Generating namespace index... Generating namespace member index... Generating concept index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... Running plantuml with JAVA... type lookup cache used 3025/65536 hits=16502 misses=3117 symbol lookup cache used 2874/65536 hits=21953 misses=2874 finished... make[5]: Leaving directory '/<>/obj-s390x-linux-gnu' [100%] Built target html_doc make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/obj-s390x-linux-gnu/CMakeFiles 0 make[3]: Leaving directory '/<>/obj-s390x-linux-gnu' make[2]: Leaving directory '/<>/obj-s390x-linux-gnu' dh_auto_build -O--buildsyste=cmake -- pdf_doc cd obj-s390x-linux-gnu && make -j4 "INSTALL=install --strip-program=true" pdf_doc VERBOSE=1 make[2]: Entering directory '/<>/obj-s390x-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-s390x-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 pdf_doc make[3]: Entering directory '/<>/obj-s390x-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-s390x-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-s390x-linux-gnu/CMakeFiles 1 make -f CMakeFiles/Makefile2 man/CMakeFiles/pdf_doc.dir/all make[4]: Entering directory '/<>/obj-s390x-linux-gnu' make -f man/CMakeFiles/pdf_doc.dir/build.make man/CMakeFiles/pdf_doc.dir/depend make[5]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/man /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/man /<>/obj-s390x-linux-gnu/man/CMakeFiles/pdf_doc.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f man/CMakeFiles/pdf_doc.dir/build.make man/CMakeFiles/pdf_doc.dir/build make[5]: Entering directory '/<>/obj-s390x-linux-gnu' [100%] Doxygen-based developer pdf documentation generation cd /<>/man/latex && make make[6]: Entering directory '/<>/man/latex' make[6]: warning: jobserver unavailable: using -j1. 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[19] [20] Underfull \hbox (badness 10000) in paragraph at lines 871--872 \T1/pcr/m/n/8 ISOSPEC[]_[][]C[]_[][]API const size[]_[]t Iso[]Spec[]::isospec[] _[]number[]_[]of[]_[]isotopic[]_[]entries = ISOSPEC[]_[][]NUMBER[]_[][]OF[]_[][ ] [21] Overfull \hbox (173.55629pt too wide) in paragraph at lines 881--882 \T1/pcr/m/n/8 const double Iso[]Spec[]::logpi = 1.[]144729885849400174143427351 353058711647294812915311571513623071472137769884826079783623270275489708 ) [22] Chapter 6. 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[52]) (./class_iso_spec_1_1_iso_layered_generator.tex <./class_iso_spec_1_1_iso _layered_generator.pdf> [53] [54] [55] Underfull \hbox (badness 10000) detected at line 177 [][][] [56] Underfull \hbox (badness 10000) in paragraph at lines 192--193 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE bool Iso[]Spec[]::[]Iso[]Layered []Generator[]::advance[]To[]Next[]Configuration[]Within[]Layer Underfull \hbox (badness 10000) in paragraph at lines 230--231 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Layer ed[]Generator[]::lprob ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 236 [][][] Underfull \hbox (badness 10000) in paragraph at lines 251--252 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Layer ed[]Generator[]::mass ( ) const [inline], [final], [57] Underfull \hbox (badness 10000) detected at line 257 [][][] Underfull \hbox (badness 10000) in paragraph at lines 282--283 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Layer ed[]Generator[]::prob ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 288 [][][] ) (./class_iso_spec_1_1_iso_ordered_generator.tex <./class_iso_spec_1_1_iso_ord ered_generator.pdf> [58] [59] [60] [61] Underfull \hbox (badness 10000) detected at line 188 [][][] Package longtable Warning: Column widths have changed (longtable) in table 6.4 on input line 213. ) (./class_iso_spec_1_1_iso_stochastic_generator.tex <./class_iso_spec_1_1_iso_ stochastic_generator.pdf> [62] [63] [64] Underfull \hbox (badness 10000) in paragraph at lines 147--148 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE bool Iso[]Spec[]::[]Iso[]Stochas tic[]Generator[]::advance[]To[]Next[]Configuration ( ) Underfull \hbox (badness 10000) detected at line 153 [][][] [65] Underfull \hbox (badness 10000) detected at line 202 [][][] Underfull \hbox (badness 10000) in paragraph at lines 217--218 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Stoch astic[]Generator[]::mass ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 223 [][][] Underfull \hbox (badness 10000) in paragraph at lines 238--239 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Stoch astic[]Generator[]::prob ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 244 [][][] ) (./class_iso_spec_1_1_iso_threshold_generator.tex <./class_iso_spec_1_1_iso_t hreshold_generator.pdf> [66] [67] [68] [69] Package longtable Warning: Column widths have changed (longtable) in table 6.5 on input line 173. 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(./allocator_8cpp_source.tex) (./allocator_8h_source.tex [117]) (./btrd_8h_source.tex [118] [119] [120]) (./conf_8h_source.tex) (./cwrapper_8cpp_source.tex [121] [122] [123] [124] Overfull \hbox (44.55553pt too wide) in paragraph at lines 329--329 []\T1/pcr/m/n/7 reinterpret_cast<[][]*[]>[](tabulator1)->WassersteinDistance(*[ ]reinterpret_cast<[][]*[]>[](tabulator2)); Overfull \hbox (78.1555pt too wide) in paragraph at lines 341--341 []\T1/pcr/m/n/7 reinterpret_cast<[][]*[]>[](tabulator1)->OrientedWassersteinDis tance(*[]reinterpret_cast<[][]*[]>[](tabulator2)); Overfull \hbox (69.75551pt too wide) in paragraph at lines 351--351 []\T1/pcr/m/n/7 reinterpret_cast<[][]*[]>[](tabulator1)->AbyssalWassersteinDist ance(*[]reinterpret_cast<[][]*[]>[](tabulator2), Overfull \hbox (27.75554pt too wide) in paragraph at lines 364--364 []\T1/pcr/m/n/7 reinterpret_cast<[][]*[]>[](tabulator1)->WassersteinMatch(*[]re interpret_cast<[][]*[]>[](tabulator2), [125] Overfull \hbox (40.35553pt too wide) in paragraph at lines 374--374 []\T1/pcr/m/n/7 ((*[]reinterpret_cast<[][]*[]>[](tabulator1))+(*[]reinterpret_c ast<[][]*[]>[](tabulator2)))); Overfull \hbox (40.35553pt too wide) in paragraph at lines 380--380 []\T1/pcr/m/n/7 ((*[]reinterpret_cast<[][]*[]>[](tabulator1))*(*[]reinterpret_c ast<[][]*[]>[](tabulator2)))); [126]) (./cwrapper_8h_source.tex [127] [128]) (./dirty_allocator_8cpp_source.tex [129]) (./dirty_allocator_8h_source.tex) (./element__tables_8cpp_source.tex [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] [162] [163] [164]) (./element__tables_8h_source.tex) (./fasta_8cpp_source.tex [165] [166] [167] [168]) (./fasta_8h_source.tex [169]) (./fixed_envelopes_8cpp_source.tex [170] [171] [172] [173] [174] [175] [176] [177] [178] [179] [180] [181] [182] [183]) (./fixed_envelopes_8h_source.tex [184] [185] [186]) (./iso_math_8cpp_source.tex [187] [188]) (./iso_math_8h_source.tex [189]) (./iso_spec_09_09_8cpp_source.tex [190] [191] [192] [193] [194] Overfull \hbox (15.15555pt too wide) in paragraph at lines 441--441 \T1/pcr/m/n/7 ----------------------------------------------------------------- -----------------------------------------[] [195] Overfull \hbox (15.15555pt too wide) in paragraph at lines 477--477 \T1/pcr/m/n/7 ----------------------------------------------------------------- -----------------------------------------[] [196] [197] Overfull \hbox (73.9555pt too wide) in paragraph at lines 654--654 \T1/pcr/m/n/7 ----------------------------------------------------------------- -------------------------------------------------------[] [198] [199] Overfull \hbox (73.9555pt too wide) in paragraph at lines 814--814 \T1/pcr/m/n/7 ----------------------------------------------------------------- -------------------------------------------------------[] [200]) (./iso_spec_09_09_8h_source.tex [201] [202] [203] [204] [205] [206]) (./marginal_trek_09_09_8cpp_source.tex [207] [208] [209] [210] [211] [212] [213] [214]) (./marginal_trek_09_09_8h_source.tex [215] [216] [217] [218]) (./misc_8cpp_source.tex [219]) (./misc_8h_source.tex [220] [221]) (./mman_8cpp_source.tex [222] [223]) (./mman_8h_source.tex [224]) (./operators_8cpp_source.tex [225]) (./operators_8h_source.tex [226] [227]) (./platform_8h_source.tex [228]) (./platform__incl_8h_source.tex) (./pod__vector_8h_source.tex [229] [230] [231] [232] [233]) (./python-build_8cpp_source.tex) (./summator_8h_source.tex [234] [235]) (./unity-build_8cpp_source.tex) [236] No file refman.ind. 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(./namespaces.tex) [1] [2] Chapter 2. (./hierarchy.tex) [3] [4] Chapter 3. (./annotated.tex) [5] [6] Chapter 4. (./files.tex) [7] [8] Chapter 5. (./namespace_iso_spec.tex (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1phv.fd) [9] [10] Overfull \hbox (152.89105pt too wide) in paragraph at lines 201--203 []\T1/phv/m/n/10 const dou-ble [] = 1.[]144729885849400174143427351353058711647 294812915311571513623071472137769884826079783623270275489708 [11] [12] [13] [14] [15] [16] [17] [18] Package longtable Warning: Column widths have changed (longtable) in table 5.1 on input line 663. [19] [20] Underfull \hbox (badness 10000) in paragraph at lines 871--872 \T1/pcr/m/n/8 ISOSPEC[]_[][]C[]_[][]API const size[]_[]t Iso[]Spec[]::isospec[] _[]number[]_[]of[]_[]isotopic[]_[]entries = ISOSPEC[]_[][]NUMBER[]_[][]OF[]_[][ ] [21] Overfull \hbox (173.55629pt too wide) in paragraph at lines 881--882 \T1/pcr/m/n/8 const double Iso[]Spec[]::logpi = 1.[]144729885849400174143427351 353058711647294812915311571513623071472137769884826079783623270275489708 ) [22] Chapter 6. (./class_iso_spec_1_1_allocator.tex [23]) (./class_iso_spec_1_1_conf_equal.tex [24]) (./class_iso_spec_1_1_conf_order.tex) (./class_iso_spec_1_1_conf_order_marginal.tex [25]) (./class_iso_spec_1_1_conf_order_marginal_descending.tex [26]) (./class_iso_spec_1_1_dirty_allocator.tex [27]) (./class_iso_spec_1_1_fixed_envelope.tex [28] Underfull \hbox (badness 1072) in paragraph at lines 89--91 []\T1/phv/m/n/10 static [] [] ([] &&iso, dou-ble target[]_[]total[]_[]prob, boo l op-ti-mize, bool tget[] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38] [39]) (./class_iso_spec_1_1_iso.tex <./class_iso_spec_1_1_iso.pdf> [40] [41] [42] [43] [44] [45] [46] [47]) (./class_iso_spec_1_1_iso_generator.tex <./class_iso_ spec_1_1_iso_generator.pdf> [48] [49] [50] Underfull \hbox (badness 10000) detected at line 175 [][][] [51] Underfull \hbox (badness 10000) detected at line 206 [][][] Overfull \hbox (30.52501pt too wide) in paragraph at lines 211--212 []\T1/phv/m/n/10 Reimplemented in [], [], and []. 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[52]) (./class_iso_spec_1_1_iso_layered_generator.tex <./class_iso_spec_1_1_iso _layered_generator.pdf> [53] [54] [55] Underfull \hbox (badness 10000) detected at line 177 [][][] [56] Underfull \hbox (badness 10000) in paragraph at lines 192--193 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE bool Iso[]Spec[]::[]Iso[]Layered []Generator[]::advance[]To[]Next[]Configuration[]Within[]Layer Underfull \hbox (badness 10000) in paragraph at lines 230--231 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Layer ed[]Generator[]::lprob ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 236 [][][] Underfull \hbox (badness 10000) in paragraph at lines 251--252 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Layer ed[]Generator[]::mass ( ) const [inline], [final], [57] Underfull \hbox (badness 10000) detected at line 257 [][][] Underfull \hbox (badness 10000) in paragraph at lines 282--283 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Layer ed[]Generator[]::prob ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 288 [][][] ) (./class_iso_spec_1_1_iso_ordered_generator.tex <./class_iso_spec_1_1_iso_ord ered_generator.pdf> [58] [59] [60] [61] Underfull \hbox (badness 10000) detected at line 188 [][][] ) (./class_iso_spec_1_1_iso_stochastic_generator.tex <./class_iso_spec_1_1_iso_ stochastic_generator.pdf> [62] [63] [64] Underfull \hbox (badness 10000) in paragraph at lines 147--148 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE bool Iso[]Spec[]::[]Iso[]Stochas tic[]Generator[]::advance[]To[]Next[]Configuration ( ) Underfull \hbox (badness 10000) detected at line 153 [][][] [65] Underfull \hbox (badness 10000) detected at line 202 [][][] Underfull \hbox (badness 10000) in paragraph at lines 217--218 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Stoch astic[]Generator[]::mass ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 223 [][][] Underfull \hbox (badness 10000) in paragraph at lines 238--239 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Stoch astic[]Generator[]::prob ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 244 [][][] ) (./class_iso_spec_1_1_iso_threshold_generator.tex <./class_iso_spec_1_1_iso_t hreshold_generator.pdf> [66] [67] [68] [69] Overfull \hbox (18.89209pt too wide) in paragraph at lines 195--196 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE bool Iso[]Spec[]::[]Iso[]Thresho ld[]Generator[]::advance[]To[]Next[]Configuration ( ) [inline], Underfull \hbox (badness 10000) detected at line 201 [][][] Underfull \hbox (badness 10000) in paragraph at lines 244--245 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Thres hold[]Generator[]::lprob ( ) const [inline], [final], [70] Underfull \hbox (badness 10000) detected at line 250 [][][] Underfull \hbox (badness 10000) in paragraph at lines 265--266 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Thres hold[]Generator[]::mass ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 271 [][][] Underfull \hbox (badness 10000) in paragraph at lines 286--287 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Thres hold[]Generator[]::prob ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 292 [][][] [71]) (./class_iso_spec_1_1_key_hasher.tex) (./class_iso_spec_1_1_layered_marginal.tex [72] <./class_iso_spec_1_1_layered_m arginal.pdf> [73] [74] Overfull \vbox (7.19118pt too high) has occurred while \output is active [75] Underfull \hbox (badness 10000) detected at line 168 [][][] [76] Underfull \hbox (badness 10000) detected at line 297 [][][] ) (./class_iso_spec_1_1_marginal.tex <./class_iso_spec_1_1_marginal.pdf> [77] [78] Underfull \hbox (badness 10000) detected at line 119 [][][] [79] Underfull \hbox 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(./class_iso_spec_1_1_t_summator.tex [108]) (./classunsafe__pod__vector.tex [109] [110] [111] [112] [113] [114]) (./structws__match__res.tex [115]) [116] Chapter 7. (./allocator_8cpp_source.tex) (./allocator_8h_source.tex [117]) (./btrd_8h_source.tex [118] [119] [120]) (./conf_8h_source.tex) (./cwrapper_8cpp_source.tex [121] [122] [123] [124] Overfull \hbox (44.55553pt too wide) in paragraph at lines 329--329 []\T1/pcr/m/n/7 reinterpret_cast<[][]*[]>[](tabulator1)->WassersteinDistance(*[ ]reinterpret_cast<[][]*[]>[](tabulator2)); Overfull \hbox (78.1555pt too wide) in paragraph at lines 341--341 []\T1/pcr/m/n/7 reinterpret_cast<[][]*[]>[](tabulator1)->OrientedWassersteinDis tance(*[]reinterpret_cast<[][]*[]>[](tabulator2)); Overfull \hbox (69.75551pt too wide) in paragraph at lines 351--351 []\T1/pcr/m/n/7 reinterpret_cast<[][]*[]>[](tabulator1)->AbyssalWassersteinDist ance(*[]reinterpret_cast<[][]*[]>[](tabulator2), Overfull \hbox (27.75554pt too wide) in paragraph at lines 364--364 []\T1/pcr/m/n/7 reinterpret_cast<[][]*[]>[](tabulator1)->WassersteinMatch(*[]re interpret_cast<[][]*[]>[](tabulator2), [125] Overfull \hbox (40.35553pt too wide) in 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[187] [188]) (./iso_math_8h_source.tex [189]) (./iso_spec_09_09_8cpp_source.tex [190] [191] [192] [193] [194] Overfull \hbox (15.15555pt too wide) in paragraph at lines 441--441 \T1/pcr/m/n/7 ----------------------------------------------------------------- -----------------------------------------[] [195] Overfull \hbox (15.15555pt too wide) in paragraph at lines 477--477 \T1/pcr/m/n/7 ----------------------------------------------------------------- -----------------------------------------[] [196] [197] Overfull \hbox (73.9555pt too wide) in paragraph at lines 654--654 \T1/pcr/m/n/7 ----------------------------------------------------------------- -------------------------------------------------------[] [198] [199] Overfull \hbox (73.9555pt too wide) in paragraph at lines 814--814 \T1/pcr/m/n/7 ----------------------------------------------------------------- -------------------------------------------------------[] [200]) (./iso_spec_09_09_8h_source.tex [201] [202] [203] [204] [205] [206]) (./marginal_trek_09_09_8cpp_source.tex [207] [208] [209] [210] [211] [212] [213] [214]) (./marginal_trek_09_09_8h_source.tex [215] [216] [217] [218]) (./misc_8cpp_source.tex [219]) (./misc_8h_source.tex [220] [221]) (./mman_8cpp_source.tex [222] [223]) (./mman_8h_source.tex [224]) (./operators_8cpp_source.tex [225]) (./operators_8h_source.tex [226] [227]) (./platform_8h_source.tex [228]) (./platform__incl_8h_source.tex) (./pod__vector_8h_source.tex [229] [230] [231] [232] [233]) (./python-build_8cpp_source.tex) (./summator_8h_source.tex [234] [235]) (./unity-build_8cpp_source.tex) [236] (./refman.ind Overfull \hbox (26.35803pt too wide) in paragraph at lines 3--5 []\T1/phv/m/n/10 /<>/IsoSpec++/allocator.cpp, Overfull \hbox (16.85416pt too wide) in paragraph at lines 5--7 []\T1/phv/m/n/10 /<>/IsoSpec++/allocator.h, Underfull \hbox (badness 10000) in paragraph at lines 7--9 []\T1/phv/m/n/10 /<>/IsoSpec++/btrd.h, Overfull \hbox (29.26509pt too wide) in paragraph at lines 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Rerun LaTeX. (./refman.aux) Package rerunfilecheck Warning: File `refman.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ) (see the transcript file for additional information) Output written on refman.pdf (262 pages, 1051052 bytes). Transcript written on refman.log. latex_count=8 ; \ while grep -E -s 'Rerun (LaTeX|to get cross-references right|to get bibliographical references right)' refman.log && [ $latex_count -gt 0 ] ;\ do \ echo "Rerunning latex...." ;\ pdflatex refman ;\ latex_count=`expr $latex_count - 1` ;\ done Package longtable Warning: Table widths have changed. Rerun LaTeX. Rerunning latex.... 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nts/map/pdftex/updmap/pdftex.map}{/usr/share/texlive/texmf-dist/fonts/enc/dvips /base/8r.enc}] [2] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] Chapter 1. (./namespaces.tex) [1] [2] Chapter 2. (./hierarchy.tex) [3] [4] Chapter 3. (./annotated.tex) [5] [6] Chapter 4. (./files.tex) [7] [8] Chapter 5. (./namespace_iso_spec.tex (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1phv.fd) [9] [10] Overfull \hbox (152.89105pt too wide) in paragraph at lines 201--203 []\T1/phv/m/n/10 const dou-ble [] = 1.[]144729885849400174143427351353058711647 294812915311571513623071472137769884826079783623270275489708 [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] Underfull \hbox (badness 10000) in paragraph at lines 871--872 \T1/pcr/m/n/8 ISOSPEC[]_[][]C[]_[][]API const size[]_[]t Iso[]Spec[]::isospec[] _[]number[]_[]of[]_[]isotopic[]_[]entries = ISOSPEC[]_[][]NUMBER[]_[][]OF[]_[][ ] [21] Overfull \hbox (173.55629pt too wide) in paragraph at lines 881--882 \T1/pcr/m/n/8 const double Iso[]Spec[]::logpi = 1.[]144729885849400174143427351 353058711647294812915311571513623071472137769884826079783623270275489708 ) [22] Chapter 6. (./class_iso_spec_1_1_allocator.tex [23]) (./class_iso_spec_1_1_conf_equal.tex [24]) (./class_iso_spec_1_1_conf_order.tex) (./class_iso_spec_1_1_conf_order_marginal.tex [25]) (./class_iso_spec_1_1_conf_order_marginal_descending.tex [26]) (./class_iso_spec_1_1_dirty_allocator.tex [27]) (./class_iso_spec_1_1_fixed_envelope.tex [28] Underfull \hbox (badness 1072) in paragraph at lines 89--91 []\T1/phv/m/n/10 static [] [] ([] &&iso, dou-ble target[]_[]total[]_[]prob, boo l op-ti-mize, bool tget[] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38] [39]) (./class_iso_spec_1_1_iso.tex <./class_iso_spec_1_1_iso.pdf> [40] [41] [42] [43] [44] [45] [46] [47]) (./class_iso_spec_1_1_iso_generator.tex <./class_iso_ spec_1_1_iso_generator.pdf> [48] [49] [50] Underfull \hbox (badness 10000) detected at line 175 [][][] [51] Underfull \hbox (badness 10000) detected at line 206 [][][] Overfull \hbox (30.52501pt too wide) in paragraph at lines 211--212 []\T1/phv/m/n/10 Reimplemented in [], [], and []. Underfull \hbox (badness 10000) detected at line 227 [][][] Overfull \hbox (30.52501pt too wide) in paragraph at lines 232--233 []\T1/phv/m/n/10 Reimplemented in [], [], and []. Underfull \hbox (badness 10000) detected at line 248 [][][] Overfull \hbox (30.52501pt too wide) in paragraph at lines 253--254 []\T1/phv/m/n/10 Reimplemented in [], [], and []. [52]) (./class_iso_spec_1_1_iso_layered_generator.tex <./class_iso_spec_1_1_iso _layered_generator.pdf> [53] [54] [55] Underfull \hbox (badness 10000) detected at line 177 [][][] [56] Underfull \hbox (badness 10000) in paragraph at lines 192--193 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE bool Iso[]Spec[]::[]Iso[]Layered []Generator[]::advance[]To[]Next[]Configuration[]Within[]Layer Underfull \hbox (badness 10000) in paragraph at lines 230--231 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Layer ed[]Generator[]::lprob ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 236 [][][] Underfull \hbox (badness 10000) in paragraph at lines 251--252 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Layer ed[]Generator[]::mass ( ) const [inline], [final], [57] Underfull \hbox (badness 10000) detected at line 257 [][][] Underfull \hbox (badness 10000) in paragraph at lines 282--283 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Layer ed[]Generator[]::prob ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 288 [][][] ) (./class_iso_spec_1_1_iso_ordered_generator.tex <./class_iso_spec_1_1_iso_ord ered_generator.pdf> [58] [59] [60] [61] Underfull \hbox (badness 10000) detected at line 188 [][][] ) (./class_iso_spec_1_1_iso_stochastic_generator.tex <./class_iso_spec_1_1_iso_ stochastic_generator.pdf> [62] [63] [64] Underfull \hbox (badness 10000) in paragraph at lines 147--148 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE bool Iso[]Spec[]::[]Iso[]Stochas tic[]Generator[]::advance[]To[]Next[]Configuration ( ) Underfull \hbox (badness 10000) detected at line 153 [][][] [65] Underfull \hbox (badness 10000) detected at line 202 [][][] Underfull \hbox (badness 10000) in paragraph at lines 217--218 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Stoch astic[]Generator[]::mass ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 223 [][][] Underfull \hbox (badness 10000) in paragraph at lines 238--239 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Stoch astic[]Generator[]::prob ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 244 [][][] ) (./class_iso_spec_1_1_iso_threshold_generator.tex <./class_iso_spec_1_1_iso_t hreshold_generator.pdf> [66] [67] [68] [69] Overfull \hbox (18.89209pt too wide) in paragraph at lines 195--196 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE bool Iso[]Spec[]::[]Iso[]Thresho ld[]Generator[]::advance[]To[]Next[]Configuration ( ) [inline], Underfull \hbox (badness 10000) detected at line 201 [][][] Underfull \hbox (badness 10000) in paragraph at lines 244--245 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Thres hold[]Generator[]::lprob ( ) const [inline], [final], [70] Underfull \hbox (badness 10000) detected at line 250 [][][] Underfull \hbox (badness 10000) in paragraph at lines 265--266 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Thres hold[]Generator[]::mass ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 271 [][][] Underfull \hbox (badness 10000) in paragraph at lines 286--287 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Thres hold[]Generator[]::prob ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 292 [][][] [71]) (./class_iso_spec_1_1_key_hasher.tex) (./class_iso_spec_1_1_layered_marginal.tex [72] <./class_iso_spec_1_1_layered_m arginal.pdf> [73] [74] Overfull \vbox (7.19118pt too high) has occurred while \output is active [75] Underfull \hbox (badness 10000) detected at line 168 [][][] [76] Underfull \hbox (badness 10000) detected at line 297 [][][] ) (./class_iso_spec_1_1_marginal.tex <./class_iso_spec_1_1_marginal.pdf> [77] [78] Underfull \hbox (badness 10000) detected at line 119 [][][] [79] Underfull \hbox (badness 10000) detected at line 181 [][][] [80] Underfull \hbox (badness 10000) detected at line 222 [][][] Underfull \hbox (badness 10000) detected at line 249 [][][] Underfull \hbox (badness 10000) detected at line 266 [][][] Underfull \hbox (badness 10000) detected at line 283 [][][] [81] Underfull \hbox (badness 10000) detected at line 314 [][][] Underfull \hbox (badness 10000) detected at line 331 [][][] [82] Underfull \hbox (badness 10000) detected at line 362 [][][] Underfull \hbox (badness 10000) detected at line 379 [][][] [83] Underfull \hbox (badness 10000) detected at line 411 [][][] [84]) (./class_iso_spec_1_1_marginal_trek.tex <./class_iso_spec_1_1_marginal_tr ek.pdf> [85] [86] [87] Underfull \hbox (badness 10000) detected at line 191 [][][] [88] Underfull \hbox (badness 10000) detected at line 215 [][][] ) (./class_iso_spec_1_1_order_marginals_by_size_decresing.tex) (./classpod__vector.tex [89] [90] [91] [92] [93] [94] [95]) (./class_iso_spec_1_1_precalculated_marginal.tex <./class_iso_spec_1_1_precalcu lated_marginal.pdf> [96] [97] [98] Underfull \hbox (badness 10000) detected at line 167 [][][] [99] Underfull \hbox (badness 10000) detected at line 206 [][][] Underfull \hbox (badness 10000) detected at line 228 [][][] Underfull \hbox (badness 10000) detected at line 245 [][][] [100] Underfull \hbox (badness 10000) detected at line 267 [][][] Underfull \hbox (badness 10000) detected at line 284 [][][] Underfull \hbox (badness 10000) detected at line 301 [][][] [101] Underfull \hbox (badness 10000) detected at line 323 [][][] Underfull \hbox (badness 10000) detected at line 340 [][][] Underfull \hbox (badness 10000) detected at line 357 [][][] [102]) (./struct_iso_spec_1_1_prob_and_conf_ptr.tex [103]) (./class_iso_spec_1_1_reverse_order.tex [104]) (./class_iso_spec_1_1_s_summator.tex [105]) (./class_iso_spec_1_1_summator.tex [106]) (./class_iso_spec_1_1_table_order.tex [107]) (./class_iso_spec_1_1_t_summator.tex [108]) (./classunsafe__pod__vector.tex [109] [110] [111] [112] [113] [114]) (./structws__match__res.tex [115]) [116] Chapter 7. (./allocator_8cpp_source.tex) (./allocator_8h_source.tex [117]) (./btrd_8h_source.tex [118] [119] [120]) (./conf_8h_source.tex) (./cwrapper_8cpp_source.tex [121] [122] [123] [124] Overfull \hbox (44.55553pt too wide) in paragraph at lines 329--329 []\T1/pcr/m/n/7 reinterpret_cast<[][]*[]>[](tabulator1)->WassersteinDistance(*[ ]reinterpret_cast<[][]*[]>[](tabulator2)); Overfull \hbox (78.1555pt too wide) in paragraph at lines 341--341 []\T1/pcr/m/n/7 reinterpret_cast<[][]*[]>[](tabulator1)->OrientedWassersteinDis tance(*[]reinterpret_cast<[][]*[]>[](tabulator2)); Overfull \hbox (69.75551pt too wide) in paragraph at lines 351--351 []\T1/pcr/m/n/7 reinterpret_cast<[][]*[]>[](tabulator1)->AbyssalWassersteinDist ance(*[]reinterpret_cast<[][]*[]>[](tabulator2), Overfull \hbox (27.75554pt too wide) in paragraph at lines 364--364 []\T1/pcr/m/n/7 reinterpret_cast<[][]*[]>[](tabulator1)->WassersteinMatch(*[]re interpret_cast<[][]*[]>[](tabulator2), [125] Overfull \hbox (40.35553pt too wide) in paragraph at lines 374--374 []\T1/pcr/m/n/7 ((*[]reinterpret_cast<[][]*[]>[](tabulator1))+(*[]reinterpret_c ast<[][]*[]>[](tabulator2)))); Overfull \hbox (40.35553pt too wide) in paragraph at lines 380--380 []\T1/pcr/m/n/7 ((*[]reinterpret_cast<[][]*[]>[](tabulator1))*(*[]reinterpret_c ast<[][]*[]>[](tabulator2)))); [126]) (./cwrapper_8h_source.tex [127] [128]) (./dirty_allocator_8cpp_source.tex [129]) (./dirty_allocator_8h_source.tex) (./element__tables_8cpp_source.tex [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] [162] [163] [164]) (./element__tables_8h_source.tex) (./fasta_8cpp_source.tex [165] [166] [167] [168]) (./fasta_8h_source.tex [169]) (./fixed_envelopes_8cpp_source.tex [170] [171] [172] [173] [174] [175] [176] [177] [178] [179] [180] [181] [182] [183]) (./fixed_envelopes_8h_source.tex [184] [185] [186]) (./iso_math_8cpp_source.tex [187] [188]) (./iso_math_8h_source.tex [189]) (./iso_spec_09_09_8cpp_source.tex [190] [191] [192] [193] [194] Overfull \hbox (15.15555pt too wide) in paragraph at lines 441--441 \T1/pcr/m/n/7 ----------------------------------------------------------------- -----------------------------------------[] [195] Overfull \hbox (15.15555pt too wide) in paragraph at lines 477--477 \T1/pcr/m/n/7 ----------------------------------------------------------------- -----------------------------------------[] [196] [197] Overfull \hbox (73.9555pt too wide) in paragraph at lines 654--654 \T1/pcr/m/n/7 ----------------------------------------------------------------- -------------------------------------------------------[] [198] [199] Overfull \hbox (73.9555pt too wide) in paragraph at lines 814--814 \T1/pcr/m/n/7 ----------------------------------------------------------------- -------------------------------------------------------[] [200]) (./iso_spec_09_09_8h_source.tex [201] [202] [203] [204] [205] [206]) (./marginal_trek_09_09_8cpp_source.tex [207] [208] [209] [210] [211] [212] [213] [214]) (./marginal_trek_09_09_8h_source.tex [215] [216] [217] [218]) (./misc_8cpp_source.tex [219]) (./misc_8h_source.tex [220] [221]) (./mman_8cpp_source.tex [222] [223]) (./mman_8h_source.tex [224]) (./operators_8cpp_source.tex [225]) (./operators_8h_source.tex [226] [227]) (./platform_8h_source.tex [228]) (./platform__incl_8h_source.tex) (./pod__vector_8h_source.tex [229] [230] [231] [232] [233]) (./python-build_8cpp_source.tex) (./summator_8h_source.tex [234] [235]) (./unity-build_8cpp_source.tex) [236] (./refman.ind Overfull \hbox (26.35803pt too wide) in paragraph at lines 3--5 []\T1/phv/m/n/10 /<>/IsoSpec++/allocator.cpp, Overfull \hbox (16.85416pt too wide) in paragraph at lines 5--7 []\T1/phv/m/n/10 /<>/IsoSpec++/allocator.h, Underfull \hbox (badness 10000) in paragraph at lines 7--9 []\T1/phv/m/n/10 /<>/IsoSpec++/btrd.h, Overfull \hbox (29.26509pt too wide) in paragraph at lines 11--13 []\T1/phv/m/n/10 /<>/IsoSpec++/cwrapper.cpp, Overfull \hbox (19.76122pt too wide) in paragraph at lines 13--15 []\T1/phv/m/n/10 /<>/IsoSpec++/cwrapper.h, Overfull \hbox (44.71758pt too wide) in paragraph at lines 15--17 []\T1/phv/m/n/10 /<>/IsoSpec++/dirtyAllocator.c pp, Overfull \hbox (35.2137pt too wide) in paragraph at lines 17--19 []\T1/phv/m/n/10 /<>/IsoSpec++/dirtyAllocator.h , Overfull \hbox (53.51065pt too wide) in paragraph at lines 19--21 []\T1/phv/m/n/10 /<>/IsoSpec++/element_tables.c pp, Overfull \hbox (44.00677pt too wide) in paragraph at lines 21--23 []\T1/phv/m/n/10 /<>/IsoSpec++/element_tables.h , Overfull \hbox (53.01595pt too wide) in paragraph at lines 27--29 []\T1/phv/m/n/10 /<>/IsoSpec++/fixedEnvelopes.c pp, Overfull \hbox (43.51207pt too wide) in paragraph at lines 29--31 []\T1/phv/m/n/10 /<>/IsoSpec++/fixedEnvelopes.h , Overfull \hbox (24.30615pt too wide) in paragraph at lines 31--33 []\T1/phv/m/n/10 /<>/IsoSpec++/isoMath.cpp, Overfull \hbox (35.32205pt too wide) in paragraph at lines 35--37 []\T1/phv/m/n/10 /<>/IsoSpec++/isoSpec++.cpp, Overfull \hbox (25.81818pt too wide) in paragraph at lines 37--39 []\T1/phv/m/n/10 /<>/IsoSpec++/isoSpec++.h, Overfull \hbox (54.73473pt too wide) in paragraph at lines 39--41 []\T1/phv/m/n/10 /<>/IsoSpec++/marginalTrek++.c pp, Overfull \hbox (45.23085pt too wide) in paragraph at lines 41--43 []\T1/phv/m/n/10 /<>/IsoSpec++/marginalTrek++.h , Overfull \hbox (17.79933pt too wide) in paragraph at lines 47--49 []\T1/phv/m/n/10 /<>/IsoSpec++/mman.cpp, Overfull \hbox (30.58806pt too wide) in paragraph at lines 51--53 []\T1/phv/m/n/10 /<>/IsoSpec++/operators.cpp, Overfull \hbox (21.08418pt too wide) in paragraph at lines 53--55 []\T1/phv/m/n/10 /<>/IsoSpec++/operators.h, Overfull \hbox (15.75618pt too wide) in paragraph at lines 55--57 []\T1/phv/m/n/10 /<>/IsoSpec++/platform.h, Overfull \hbox (34.25987pt too wide) in paragraph at lines 57--59 []\T1/phv/m/n/10 /<>/IsoSpec++/platform_incl.h, Overfull \hbox (27.14102pt too wide) in paragraph at lines 59--61 []\T1/phv/m/n/10 /<>/IsoSpec++/pod_vector.h, Overfull \hbox (22.84814pt too wide) in paragraph at lines 63--65 []\T1/phv/m/n/10 /<>/IsoSpec++/summator.h, Underfull \hbox (badness 10000) in paragraph at lines 65--67 []\T1/phv/m/n/10 /<>/IsoSpec++/unity- [237] [238] [239] [240] [241] [242] Underfull \hbox (badness 870) in paragraph at lines 842--844 []| \T1/phv/m/n/10 IsoSpec::OrderMarginalsBySizeDecresing$\OML/cmm/m/it/10 <$ \ T1/phv/m/n/10 T $\OML/cmm/m/it/10 >$\T1/phv/m/n/10 , [243] Underfull \hbox (badness 870) in paragraph at lines 856--858 []| \T1/phv/m/n/10 IsoSpec::OrderMarginalsBySizeDecresing$\OML/cmm/m/it/10 <$ \ T1/phv/m/n/10 T $\OML/cmm/m/it/10 >$\T1/phv/m/n/10 , [244] [245] [246]) (./refman.aux) ) (see the transcript file for additional information) Output written on refman.pdf (262 pages, 1050758 bytes). Transcript written on refman.log. makeindex refman.idx This is makeindex, version 2.17 [TeX Live 2023] (kpathsea + Thai support). Scanning input file refman.idx....done (815 entries accepted, 0 rejected). Sorting entries.........done (8611 comparisons). Generating output file refman.ind....done (1125 lines written, 0 warnings). Output written in refman.ind. 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[1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}{/usr/share/texlive/texmf-dist/fonts/enc/dvips /base/8r.enc}] [2] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] Chapter 1. (./namespaces.tex) [1] [2] Chapter 2. (./hierarchy.tex) [3] [4] Chapter 3. (./annotated.tex) [5] [6] Chapter 4. (./files.tex) [7] [8] Chapter 5. (./namespace_iso_spec.tex (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1phv.fd) [9] [10] Overfull \hbox (152.89105pt too wide) in paragraph at lines 201--203 []\T1/phv/m/n/10 const dou-ble [] = 1.[]144729885849400174143427351353058711647 294812915311571513623071472137769884826079783623270275489708 [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] Underfull \hbox (badness 10000) in paragraph at lines 871--872 \T1/pcr/m/n/8 ISOSPEC[]_[][]C[]_[][]API const size[]_[]t Iso[]Spec[]::isospec[] _[]number[]_[]of[]_[]isotopic[]_[]entries = ISOSPEC[]_[][]NUMBER[]_[][]OF[]_[][ ] [21] Overfull \hbox (173.55629pt too wide) in paragraph at lines 881--882 \T1/pcr/m/n/8 const double Iso[]Spec[]::logpi = 1.[]144729885849400174143427351 353058711647294812915311571513623071472137769884826079783623270275489708 ) [22] Chapter 6. (./class_iso_spec_1_1_allocator.tex [23]) (./class_iso_spec_1_1_conf_equal.tex [24]) (./class_iso_spec_1_1_conf_order.tex) (./class_iso_spec_1_1_conf_order_marginal.tex [25]) (./class_iso_spec_1_1_conf_order_marginal_descending.tex [26]) (./class_iso_spec_1_1_dirty_allocator.tex [27]) (./class_iso_spec_1_1_fixed_envelope.tex [28] Underfull \hbox (badness 1072) in paragraph at lines 89--91 []\T1/phv/m/n/10 static [] [] ([] &&iso, dou-ble target[]_[]total[]_[]prob, boo l op-ti-mize, bool tget[] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38] [39]) (./class_iso_spec_1_1_iso.tex <./class_iso_spec_1_1_iso.pdf> [40] [41] [42] [43] [44] [45] [46] [47]) (./class_iso_spec_1_1_iso_generator.tex <./class_iso_ spec_1_1_iso_generator.pdf> [48] [49] [50] Underfull \hbox (badness 10000) detected at line 175 [][][] [51] Underfull \hbox (badness 10000) detected at line 206 [][][] Overfull \hbox (30.52501pt too wide) in paragraph at lines 211--212 []\T1/phv/m/n/10 Reimplemented in [], [], and []. Underfull \hbox (badness 10000) detected at line 227 [][][] Overfull \hbox (30.52501pt too wide) in paragraph at lines 232--233 []\T1/phv/m/n/10 Reimplemented in [], [], and []. Underfull \hbox (badness 10000) detected at line 248 [][][] Overfull \hbox (30.52501pt too wide) in paragraph at lines 253--254 []\T1/phv/m/n/10 Reimplemented in [], [], and []. [52]) (./class_iso_spec_1_1_iso_layered_generator.tex <./class_iso_spec_1_1_iso _layered_generator.pdf> [53] [54] [55] Underfull \hbox (badness 10000) detected at line 177 [][][] [56] Underfull \hbox (badness 10000) in paragraph at lines 192--193 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE bool Iso[]Spec[]::[]Iso[]Layered []Generator[]::advance[]To[]Next[]Configuration[]Within[]Layer Underfull \hbox (badness 10000) in paragraph at lines 230--231 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Layer ed[]Generator[]::lprob ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 236 [][][] Underfull \hbox (badness 10000) in paragraph at lines 251--252 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Layer ed[]Generator[]::mass ( ) const [inline], [final], [57] Underfull \hbox (badness 10000) detected at line 257 [][][] Underfull \hbox (badness 10000) in paragraph at lines 282--283 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Layer ed[]Generator[]::prob ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 288 [][][] ) (./class_iso_spec_1_1_iso_ordered_generator.tex <./class_iso_spec_1_1_iso_ord ered_generator.pdf> [58] [59] [60] [61] Underfull \hbox (badness 10000) detected at line 188 [][][] ) (./class_iso_spec_1_1_iso_stochastic_generator.tex <./class_iso_spec_1_1_iso_ stochastic_generator.pdf> [62] [63] [64] Underfull \hbox (badness 10000) in paragraph at lines 147--148 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE bool Iso[]Spec[]::[]Iso[]Stochas tic[]Generator[]::advance[]To[]Next[]Configuration ( ) Underfull \hbox (badness 10000) detected at line 153 [][][] [65] Underfull \hbox (badness 10000) detected at line 202 [][][] Underfull \hbox (badness 10000) in paragraph at lines 217--218 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Stoch astic[]Generator[]::mass ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 223 [][][] Underfull \hbox (badness 10000) in paragraph at lines 238--239 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Stoch astic[]Generator[]::prob ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 244 [][][] ) (./class_iso_spec_1_1_iso_threshold_generator.tex <./class_iso_spec_1_1_iso_t hreshold_generator.pdf> [66] [67] [68] [69] Overfull \hbox (18.89209pt too wide) in paragraph at lines 195--196 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE bool Iso[]Spec[]::[]Iso[]Thresho ld[]Generator[]::advance[]To[]Next[]Configuration ( ) [inline], Underfull \hbox (badness 10000) detected at line 201 [][][] Underfull \hbox (badness 10000) in paragraph at lines 244--245 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Thres hold[]Generator[]::lprob ( ) const [inline], [final], [70] Underfull \hbox (badness 10000) detected at line 250 [][][] Underfull \hbox (badness 10000) in paragraph at lines 265--266 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Thres hold[]Generator[]::mass ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 271 [][][] Underfull \hbox (badness 10000) in paragraph at lines 286--287 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Thres hold[]Generator[]::prob ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 292 [][][] [71]) (./class_iso_spec_1_1_key_hasher.tex) (./class_iso_spec_1_1_layered_marginal.tex [72] <./class_iso_spec_1_1_layered_m arginal.pdf> [73] [74] Overfull \vbox (7.19118pt too high) has occurred while \output is active [75] Underfull \hbox (badness 10000) detected at line 168 [][][] [76] Underfull \hbox (badness 10000) detected at line 297 [][][] ) (./class_iso_spec_1_1_marginal.tex <./class_iso_spec_1_1_marginal.pdf> [77] [78] Underfull \hbox (badness 10000) detected at line 119 [][][] [79] Underfull \hbox (badness 10000) detected at line 181 [][][] [80] Underfull \hbox (badness 10000) detected at line 222 [][][] Underfull \hbox (badness 10000) detected at line 249 [][][] Underfull \hbox (badness 10000) detected at line 266 [][][] Underfull \hbox (badness 10000) detected at line 283 [][][] [81] Underfull \hbox (badness 10000) detected at line 314 [][][] Underfull \hbox (badness 10000) detected at line 331 [][][] [82] Underfull \hbox (badness 10000) detected at line 362 [][][] Underfull \hbox (badness 10000) detected at line 379 [][][] [83] Underfull \hbox (badness 10000) detected at line 411 [][][] [84]) (./class_iso_spec_1_1_marginal_trek.tex <./class_iso_spec_1_1_marginal_tr ek.pdf> [85] [86] [87] Underfull \hbox (badness 10000) detected at line 191 [][][] [88] Underfull \hbox (badness 10000) detected at line 215 [][][] ) (./class_iso_spec_1_1_order_marginals_by_size_decresing.tex) (./classpod__vector.tex [89] [90] [91] [92] [93] [94] [95]) (./class_iso_spec_1_1_precalculated_marginal.tex <./class_iso_spec_1_1_precalcu lated_marginal.pdf> [96] [97] [98] Underfull \hbox (badness 10000) detected at line 167 [][][] [99] Underfull \hbox (badness 10000) detected at line 206 [][][] Underfull \hbox (badness 10000) detected at line 228 [][][] Underfull \hbox (badness 10000) detected at line 245 [][][] [100] Underfull \hbox (badness 10000) detected at line 267 [][][] Underfull \hbox (badness 10000) detected at line 284 [][][] Underfull \hbox (badness 10000) detected at line 301 [][][] [101] Underfull \hbox (badness 10000) detected at line 323 [][][] Underfull \hbox (badness 10000) detected at line 340 [][][] Underfull \hbox (badness 10000) detected at line 357 [][][] [102]) (./struct_iso_spec_1_1_prob_and_conf_ptr.tex [103]) (./class_iso_spec_1_1_reverse_order.tex [104]) (./class_iso_spec_1_1_s_summator.tex [105]) (./class_iso_spec_1_1_summator.tex [106]) (./class_iso_spec_1_1_table_order.tex [107]) (./class_iso_spec_1_1_t_summator.tex [108]) (./classunsafe__pod__vector.tex [109] [110] [111] [112] [113] [114]) (./structws__match__res.tex [115]) [116] Chapter 7. (./allocator_8cpp_source.tex) (./allocator_8h_source.tex [117]) (./btrd_8h_source.tex [118] [119] [120]) (./conf_8h_source.tex) (./cwrapper_8cpp_source.tex [121] [122] [123] [124] Overfull \hbox (44.55553pt too wide) in paragraph at lines 329--329 []\T1/pcr/m/n/7 reinterpret_cast<[][]*[]>[](tabulator1)->WassersteinDistance(*[ ]reinterpret_cast<[][]*[]>[](tabulator2)); Overfull \hbox (78.1555pt too wide) in paragraph at lines 341--341 []\T1/pcr/m/n/7 reinterpret_cast<[][]*[]>[](tabulator1)->OrientedWassersteinDis tance(*[]reinterpret_cast<[][]*[]>[](tabulator2)); Overfull \hbox (69.75551pt too wide) in paragraph at lines 351--351 []\T1/pcr/m/n/7 reinterpret_cast<[][]*[]>[](tabulator1)->AbyssalWassersteinDist ance(*[]reinterpret_cast<[][]*[]>[](tabulator2), Overfull \hbox (27.75554pt too wide) in paragraph at lines 364--364 []\T1/pcr/m/n/7 reinterpret_cast<[][]*[]>[](tabulator1)->WassersteinMatch(*[]re interpret_cast<[][]*[]>[](tabulator2), [125] Overfull \hbox (40.35553pt too wide) in paragraph at lines 374--374 []\T1/pcr/m/n/7 ((*[]reinterpret_cast<[][]*[]>[](tabulator1))+(*[]reinterpret_c ast<[][]*[]>[](tabulator2)))); Overfull \hbox (40.35553pt too wide) in paragraph at lines 380--380 []\T1/pcr/m/n/7 ((*[]reinterpret_cast<[][]*[]>[](tabulator1))*(*[]reinterpret_c ast<[][]*[]>[](tabulator2)))); [126]) (./cwrapper_8h_source.tex [127] [128]) (./dirty_allocator_8cpp_source.tex [129]) (./dirty_allocator_8h_source.tex) (./element__tables_8cpp_source.tex [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] [162] [163] [164]) (./element__tables_8h_source.tex) (./fasta_8cpp_source.tex [165] [166] [167] [168]) (./fasta_8h_source.tex [169]) (./fixed_envelopes_8cpp_source.tex [170] [171] [172] [173] [174] [175] [176] [177] [178] [179] [180] [181] [182] [183]) (./fixed_envelopes_8h_source.tex [184] [185] [186]) (./iso_math_8cpp_source.tex [187] [188]) (./iso_math_8h_source.tex [189]) (./iso_spec_09_09_8cpp_source.tex [190] [191] [192] [193] [194] Overfull \hbox (15.15555pt too wide) in paragraph at lines 441--441 \T1/pcr/m/n/7 ----------------------------------------------------------------- -----------------------------------------[] [195] Overfull \hbox (15.15555pt too wide) in paragraph at lines 477--477 \T1/pcr/m/n/7 ----------------------------------------------------------------- -----------------------------------------[] [196] [197] Overfull \hbox (73.9555pt too wide) in paragraph at lines 654--654 \T1/pcr/m/n/7 ----------------------------------------------------------------- -------------------------------------------------------[] [198] [199] Overfull \hbox (73.9555pt too wide) in paragraph at lines 814--814 \T1/pcr/m/n/7 ----------------------------------------------------------------- -------------------------------------------------------[] [200]) (./iso_spec_09_09_8h_source.tex [201] [202] [203] [204] [205] [206]) (./marginal_trek_09_09_8cpp_source.tex [207] [208] [209] [210] [211] [212] [213] [214]) (./marginal_trek_09_09_8h_source.tex [215] [216] [217] [218]) (./misc_8cpp_source.tex [219]) (./misc_8h_source.tex [220] [221]) (./mman_8cpp_source.tex [222] [223]) (./mman_8h_source.tex [224]) (./operators_8cpp_source.tex [225]) (./operators_8h_source.tex [226] [227]) (./platform_8h_source.tex [228]) (./platform__incl_8h_source.tex) (./pod__vector_8h_source.tex [229] [230] [231] [232] [233]) (./python-build_8cpp_source.tex) (./summator_8h_source.tex [234] [235]) (./unity-build_8cpp_source.tex) [236] (./refman.ind Overfull \hbox (26.35803pt too wide) in paragraph at lines 3--5 []\T1/phv/m/n/10 /<>/IsoSpec++/allocator.cpp, Overfull \hbox (16.85416pt too wide) in paragraph at lines 5--7 []\T1/phv/m/n/10 /<>/IsoSpec++/allocator.h, Underfull \hbox (badness 10000) in paragraph at lines 7--9 []\T1/phv/m/n/10 /<>/IsoSpec++/btrd.h, Overfull \hbox (29.26509pt too wide) in paragraph at lines 11--13 []\T1/phv/m/n/10 /<>/IsoSpec++/cwrapper.cpp, Overfull \hbox (19.76122pt too wide) in paragraph at lines 13--15 []\T1/phv/m/n/10 /<>/IsoSpec++/cwrapper.h, Overfull \hbox (44.71758pt too wide) in paragraph at lines 15--17 []\T1/phv/m/n/10 /<>/IsoSpec++/dirtyAllocator.c pp, Overfull \hbox (35.2137pt too wide) in paragraph at lines 17--19 []\T1/phv/m/n/10 /<>/IsoSpec++/dirtyAllocator.h , Overfull \hbox (53.51065pt too wide) in paragraph at lines 19--21 []\T1/phv/m/n/10 /<>/IsoSpec++/element_tables.c pp, Overfull \hbox (44.00677pt too wide) in paragraph at lines 21--23 []\T1/phv/m/n/10 /<>/IsoSpec++/element_tables.h , Overfull \hbox (53.01595pt too wide) in paragraph at lines 27--29 []\T1/phv/m/n/10 /<>/IsoSpec++/fixedEnvelopes.c pp, Overfull \hbox (43.51207pt too wide) in paragraph at lines 29--31 []\T1/phv/m/n/10 /<>/IsoSpec++/fixedEnvelopes.h , Overfull \hbox (24.30615pt too wide) in paragraph at lines 31--33 []\T1/phv/m/n/10 /<>/IsoSpec++/isoMath.cpp, Overfull \hbox (35.32205pt too wide) in paragraph at lines 35--37 []\T1/phv/m/n/10 /<>/IsoSpec++/isoSpec++.cpp, Overfull \hbox (25.81818pt too wide) in paragraph at lines 37--39 []\T1/phv/m/n/10 /<>/IsoSpec++/isoSpec++.h, Overfull \hbox (54.73473pt too wide) in paragraph at lines 39--41 []\T1/phv/m/n/10 /<>/IsoSpec++/marginalTrek++.c pp, Overfull \hbox (45.23085pt too wide) in paragraph at lines 41--43 []\T1/phv/m/n/10 /<>/IsoSpec++/marginalTrek++.h , Overfull \hbox (17.79933pt too wide) in paragraph at lines 47--49 []\T1/phv/m/n/10 /<>/IsoSpec++/mman.cpp, Overfull \hbox (30.58806pt too wide) in paragraph at lines 51--53 []\T1/phv/m/n/10 /<>/IsoSpec++/operators.cpp, Overfull \hbox (21.08418pt too wide) in paragraph at lines 53--55 []\T1/phv/m/n/10 /<>/IsoSpec++/operators.h, Overfull \hbox (15.75618pt too wide) in paragraph at lines 55--57 []\T1/phv/m/n/10 /<>/IsoSpec++/platform.h, Overfull \hbox (34.25987pt too wide) in paragraph at lines 57--59 []\T1/phv/m/n/10 /<>/IsoSpec++/platform_incl.h, Overfull \hbox (27.14102pt too wide) in paragraph at lines 59--61 []\T1/phv/m/n/10 /<>/IsoSpec++/pod_vector.h, Overfull \hbox (22.84814pt too wide) in paragraph at lines 63--65 []\T1/phv/m/n/10 /<>/IsoSpec++/summator.h, Underfull \hbox (badness 10000) in paragraph at lines 65--67 []\T1/phv/m/n/10 /<>/IsoSpec++/unity- [237] [238] [239] [240] [241] [242] Underfull \hbox (badness 870) in paragraph at lines 842--844 []| \T1/phv/m/n/10 IsoSpec::OrderMarginalsBySizeDecresing$\OML/cmm/m/it/10 <$ \ T1/phv/m/n/10 T $\OML/cmm/m/it/10 >$\T1/phv/m/n/10 , [243] Underfull \hbox (badness 870) in paragraph at lines 856--858 []| \T1/phv/m/n/10 IsoSpec::OrderMarginalsBySizeDecresing$\OML/cmm/m/it/10 <$ \ T1/phv/m/n/10 T $\OML/cmm/m/it/10 >$\T1/phv/m/n/10 , [244] [245] [246]) (./refman.aux) ) (see the transcript file for additional information) Output written on refman.pdf (262 pages, 1050758 bytes). Transcript written on refman.log. make[6]: Leaving directory '/<>/man/latex' make[5]: Leaving directory '/<>/obj-s390x-linux-gnu' [100%] Built target pdf_doc make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/obj-s390x-linux-gnu/CMakeFiles 0 make[3]: Leaving directory '/<>/obj-s390x-linux-gnu' make[2]: Leaving directory '/<>/obj-s390x-linux-gnu' # sed-based replacement of the cloudflare URL with the MathJax.js file from the # libjs-mathjax package sh debian/replace-mathjax-cloudflare-url-local-file.sh # Recreate the symlink that was created by setup.py # and that we had to remove at the override_dh_clean target. ln -sf IsoSpec++ IsoSpecPy/IsoSpec++ make[1]: Leaving directory '/<>' dh_auto_test -a rm -fr -- /tmp/dh-xdg-rundir-ILFN4i2t create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dpkg-query: no packages found matching r-base-dev dpkg-query: no packages found matching r-base-core dh binary-arch --with python3 dh_testroot -a dh_prep -a rm -f -- debian/libisospec\+\+-dev.substvars debian/libisospec\+\+2t64.substvars debian/python3-isospec.substvars rm -fr -- debian/.debhelper/generated/libisospec\+\+-dev/ debian/libisospec\+\+-dev/ debian/tmp/ debian/.debhelper/generated/libisospec\+\+2t64/ debian/libisospec\+\+2t64/ debian/.debhelper/generated/python3-isospec/ debian/python3-isospec/ rm -f debian/libisospec\+\+-dev.debhelper.log debian/libisospec\+\+2t64.debhelper.log debian/python3-isospec.debhelper.log debian/rules override_dh_auto_install make[1]: Entering directory '/<>' dpkg-query: no packages found matching r-base-dev dpkg-query: no packages found matching r-base-core dh_auto_configure -O--buildsystem=pybuild -O--system=distutils --sourcedirectory=. pybuild --configure -i python{version} -p 3.12 I: pybuild base:311: python3.12 setup.py config running config dh_auto_build -O--buildsystem=cmake -O--system=distutils --sourcedirectory=. cd obj-s390x-linux-gnu && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/<>/obj-s390x-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-s390x-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-s390x-linux-gnu/CMakeFiles /<>/obj-s390x-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/<>/obj-s390x-linux-gnu' make -f IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/build.make IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/depend make -f IsoSpec++/CMakeFiles/IsoSpec++-static.dir/build.make IsoSpec++/CMakeFiles/IsoSpec++-static.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/IsoSpec++ /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/IsoSpec++ /<>/obj-s390x-linux-gnu/IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/IsoSpec++ /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/IsoSpec++ /<>/obj-s390x-linux-gnu/IsoSpec++/CMakeFiles/IsoSpec++-static.dir/DependInfo.cmake "--color=" Dependencies file "IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/unity-build.cpp.o.d" is newer than depends file "/<>/obj-s390x-linux-gnu/IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/compiler_depend.internal". Dependencies file "IsoSpec++/CMakeFiles/IsoSpec++-static.dir/unity-build.cpp.o.d" is newer than depends file "/<>/obj-s390x-linux-gnu/IsoSpec++/CMakeFiles/IsoSpec++-static.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target IsoSpec++-shared make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/build.make IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/build Consolidate compiler generated dependencies of target IsoSpec++-static make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f IsoSpec++/CMakeFiles/IsoSpec++-static.dir/build.make IsoSpec++/CMakeFiles/IsoSpec++-static.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' make[4]: Nothing to be done for 'IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/build'. make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make[4]: Entering directory '/<>/obj-s390x-linux-gnu' make[4]: Nothing to be done for 'IsoSpec++/CMakeFiles/IsoSpec++-static.dir/build'. make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 50%] Built target IsoSpec++-static [100%] Built target IsoSpec++-shared make[3]: Leaving directory '/<>/obj-s390x-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/obj-s390x-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/<>/obj-s390x-linux-gnu' dh_auto_configure -O--buildsystem=cmake -- \ -DCMAKE_INSTALL_PREFIX=/usr \ -DISOSPEC_LIB_VERSION=2.1.0 -DISOSPEC_LIB_SOVERSION=2 cd obj-s390x-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/s390x-linux-gnu -DCMAKE_INSTALL_PREFIX=/usr -DISOSPEC_LIB_VERSION=2.1.0 -DISOSPEC_LIB_SOVERSION=2 .. Configuring build for project IsoSpec -- CMAKE_CXX_COMPILER: /usr/bin/c++ -- Setting definition -Wno-unknown-pragmas. -- Setting definition -Wall. -- Setting definition -Wextra. -- Setting definition -pedantic. -- CMAKE_SOURCE_DIR: /<> -- CMAKE_BINARY_DIR: /<>/obj-s390x-linux-gnu UNIX non APPLE environment ~~~~~~ Instructions ~~~~~~ On UNIX/GNU-Linux, please run the configuration like this: cmake -G "Unix Makefiles" -DCMAKE_BUILD_TYPE= -DCMAKE_INSTALL_PREFIX= ../development -- Starting configuration for the doc material for IsoSpec  gm convert: Unable to read font (/usr/share/fonts/type1/gsfonts/n019003l.pfb). gm convert: Unable to read font (/usr/share/fonts/type1/gsfonts/n019003l.pfb). -- Finished configuration of the doc material. -- Starting configuration for the example material for IsoSpec  -- Finished configuration for the example material. The build toolchain is: Linux  -- CMAKE_BUILD_TYPE: None. -- CMAKE_INSTALL_PREFIX: /usr. "Now configuring IsoSpec++/ for IsoSpec" -- Configuring done (0.6s) -- Generating done (0.0s) -- Build files have been written to: /<>/obj-s390x-linux-gnu dh_auto_build -O--buildsystem=cmake cd obj-s390x-linux-gnu && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/<>/obj-s390x-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-s390x-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-s390x-linux-gnu/CMakeFiles /<>/obj-s390x-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/<>/obj-s390x-linux-gnu' make -f IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/build.make IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/depend make -f IsoSpec++/CMakeFiles/IsoSpec++-static.dir/build.make IsoSpec++/CMakeFiles/IsoSpec++-static.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/IsoSpec++ /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/IsoSpec++ /<>/obj-s390x-linux-gnu/IsoSpec++/CMakeFiles/IsoSpec++-static.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/IsoSpec++ /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/IsoSpec++ /<>/obj-s390x-linux-gnu/IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/DependInfo.cmake "--color=" Dependencies file "IsoSpec++/CMakeFiles/IsoSpec++-static.dir/unity-build.cpp.o.d" is newer than depends file "/<>/obj-s390x-linux-gnu/IsoSpec++/CMakeFiles/IsoSpec++-static.dir/compiler_depend.internal". Dependencies file "IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/unity-build.cpp.o.d" is newer than depends file "/<>/obj-s390x-linux-gnu/IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target IsoSpec++-static Consolidate compiler generated dependencies of target IsoSpec++-shared make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f IsoSpec++/CMakeFiles/IsoSpec++-static.dir/build.make IsoSpec++/CMakeFiles/IsoSpec++-static.dir/build make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/build.make IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' make[4]: Nothing to be done for 'IsoSpec++/CMakeFiles/IsoSpec++-static.dir/build'. make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 50%] Built target IsoSpec++-static make[4]: Entering directory '/<>/obj-s390x-linux-gnu' make[4]: Nothing to be done for 'IsoSpec++/CMakeFiles/IsoSpec++-shared.dir/build'. make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [100%] Built target IsoSpec++-shared make[3]: Leaving directory '/<>/obj-s390x-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/obj-s390x-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/<>/obj-s390x-linux-gnu' dh_auto_configure -O--buildsystem=cmake -- \ -DCMAKE_INSTALL_PREFIX=/usr \ -DISOSPEC_LIB_VERSION=2.1.0 -DISOSPEC_LIB_SOVERSION=2 cd obj-s390x-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/s390x-linux-gnu -DCMAKE_INSTALL_PREFIX=/usr -DISOSPEC_LIB_VERSION=2.1.0 -DISOSPEC_LIB_SOVERSION=2 .. Configuring build for project IsoSpec -- CMAKE_CXX_COMPILER: /usr/bin/c++ -- Setting definition -Wno-unknown-pragmas. -- Setting definition -Wall. -- Setting definition -Wextra. -- Setting definition -pedantic. -- CMAKE_SOURCE_DIR: /<> -- CMAKE_BINARY_DIR: /<>/obj-s390x-linux-gnu UNIX non APPLE environment ~~~~~~ Instructions ~~~~~~ On UNIX/GNU-Linux, please run the configuration like this: cmake -G "Unix Makefiles" -DCMAKE_BUILD_TYPE= -DCMAKE_INSTALL_PREFIX= ../development -- Starting configuration for the doc material for IsoSpec  gm convert: Unable to read font (/usr/share/fonts/type1/gsfonts/n019003l.pfb). gm convert: Unable to read font (/usr/share/fonts/type1/gsfonts/n019003l.pfb). -- Finished configuration of the doc material. -- Starting configuration for the example material for IsoSpec  -- Finished configuration for the example material. The build toolchain is: Linux  -- CMAKE_BUILD_TYPE: None. -- CMAKE_INSTALL_PREFIX: /usr. "Now configuring IsoSpec++/ for IsoSpec" -- Configuring done (0.7s) -- Generating done (0.0s) -- Build files have been written to: /<>/obj-s390x-linux-gnu # Generate the dev-doc in the man/hml and man/latex directories #doxygen man/doxyfile dh_auto_build -O--buildsyste=cmake -- html_doc cd obj-s390x-linux-gnu && make -j4 "INSTALL=install --strip-program=true" html_doc VERBOSE=1 make[2]: Entering directory '/<>/obj-s390x-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-s390x-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 html_doc make[3]: Entering directory '/<>/obj-s390x-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-s390x-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-s390x-linux-gnu/CMakeFiles 1 make -f CMakeFiles/Makefile2 man/CMakeFiles/html_doc.dir/all make[4]: Entering directory '/<>/obj-s390x-linux-gnu' make -f man/CMakeFiles/html_doc.dir/build.make man/CMakeFiles/html_doc.dir/depend make[5]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/man /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/man /<>/obj-s390x-linux-gnu/man/CMakeFiles/html_doc.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f man/CMakeFiles/html_doc.dir/build.make man/CMakeFiles/html_doc.dir/build make[5]: Entering directory '/<>/obj-s390x-linux-gnu' [100%] Doxygen-based developer html documentation generation cd /<>/man && doxygen doxyfile warning: Tag 'TCL_SUBST' at line 248 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: ignoring unsupported tag 'CLANG_COMPILATION_DATABASE_PATH' at line 1102, file doxyfile warning: Tag 'COLS_IN_ALPHA_INDEX' at line 1120 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'HTML_TIMESTAMP' at line 1256 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'FORMULA_TRANSPARENT' at line 1545 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'LATEX_SOURCE_CODE' at line 1833 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'LATEX_TIMESTAMP' at line 1849 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'RTF_SOURCE_CODE' at line 1915 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOCBOOK_PROGRAMLISTING' at line 2013 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'PERL_PATH' at line 2193 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'CLASS_DIAGRAMS' at line 2206 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'MSCGEN_PATH' at line 2215 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTNAME' at line 2257 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTSIZE' at line 2264 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_TRANSPARENT' at line 2488 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" Doxygen version used: 1.9.8 Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /<>/IsoSpec++ Reading and parsing tag files Parsing files Preprocessing /<>/IsoSpec++/allocator.cpp... Parsing file /<>/IsoSpec++/allocator.cpp... Preprocessing /<>/IsoSpec++/allocator.h... Parsing file /<>/IsoSpec++/allocator.h... Preprocessing /<>/IsoSpec++/btrd.h... Parsing file /<>/IsoSpec++/btrd.h... Preprocessing /<>/IsoSpec++/conf.h... Parsing file /<>/IsoSpec++/conf.h... Preprocessing /<>/IsoSpec++/cwrapper.cpp... Parsing file /<>/IsoSpec++/cwrapper.cpp... Preprocessing /<>/IsoSpec++/cwrapper.h... Parsing file /<>/IsoSpec++/cwrapper.h... Preprocessing /<>/IsoSpec++/dirtyAllocator.cpp... Parsing file /<>/IsoSpec++/dirtyAllocator.cpp... Preprocessing /<>/IsoSpec++/dirtyAllocator.h... Parsing file /<>/IsoSpec++/dirtyAllocator.h... Preprocessing /<>/IsoSpec++/element_tables.cpp... Parsing file /<>/IsoSpec++/element_tables.cpp... Preprocessing /<>/IsoSpec++/element_tables.h... Parsing file /<>/IsoSpec++/element_tables.h... Preprocessing /<>/IsoSpec++/fasta.cpp... Parsing file /<>/IsoSpec++/fasta.cpp... Preprocessing /<>/IsoSpec++/fasta.h... Parsing file /<>/IsoSpec++/fasta.h... Preprocessing /<>/IsoSpec++/fixedEnvelopes.cpp... Parsing file /<>/IsoSpec++/fixedEnvelopes.cpp... Preprocessing /<>/IsoSpec++/fixedEnvelopes.h... Parsing file /<>/IsoSpec++/fixedEnvelopes.h... Preprocessing /<>/IsoSpec++/isoMath.cpp... Parsing file /<>/IsoSpec++/isoMath.cpp... Preprocessing /<>/IsoSpec++/isoMath.h... Parsing file /<>/IsoSpec++/isoMath.h... Preprocessing /<>/IsoSpec++/isoSpec++.cpp... Parsing file /<>/IsoSpec++/isoSpec++.cpp... Preprocessing /<>/IsoSpec++/isoSpec++.h... Parsing file /<>/IsoSpec++/isoSpec++.h... Preprocessing /<>/IsoSpec++/marginalTrek++.cpp... Parsing file /<>/IsoSpec++/marginalTrek++.cpp... Preprocessing /<>/IsoSpec++/marginalTrek++.h... Parsing file /<>/IsoSpec++/marginalTrek++.h... Preprocessing /<>/IsoSpec++/misc.cpp... Parsing file /<>/IsoSpec++/misc.cpp... Preprocessing /<>/IsoSpec++/misc.h... Parsing file /<>/IsoSpec++/misc.h... Preprocessing /<>/IsoSpec++/mman.cpp... Parsing file /<>/IsoSpec++/mman.cpp... Preprocessing /<>/IsoSpec++/mman.h... Parsing file /<>/IsoSpec++/mman.h... Preprocessing /<>/IsoSpec++/operators.cpp... Parsing file /buil/<>/IsoSpec++/allocator.h:33: warning: Compound IsoSpec::Allocator is not documented. /<>/IsoSpec++/operators.h:53: warning: Compound IsoSpec::ConfEqual is not documented. /<>/IsoSpec++/operators.h:75: warning: Compound IsoSpec::ConfOrder is not documented. /<>/IsoSpec++/operators.h:87: warning: Compound IsoSpec::ConfOrderMarginal is not documented. /<>/IsoSpec++/operators.h:102: warning: Compound IsoSpec::ConfOrderMarginalDescending is not documented. /<>/IsoSpec++/dirtyAllocator.h:25: warning: Compound IsoSpec::DirtyAllocator is not documented. /<>/IsoSpec++/fixedEnvelopes.h:40: warning: Compound IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/isoSpec++.h:439: warning: Compound IsoSpec::IsoLayeredGenerator is not documented. /<>/IsoSpec++/isoSpec++.h:542: warning: Compound IsoSpec::IsoStochasticGenerator is not documented. /<>/IsoSpec++/operators.h:28: warning: Compound IsoSpec::KeyHasher is not documented. /<>/IsoSpec++/operators.h:141: warning: Compound IsoSpec::OrderMarginalsBySizeDecresing is not documented. /<>/IsoSpec++/conf.h:24: warning: Compound IsoSpec::ProbAndConfPtr is not documented. /<>/IsoSpec++/operators.h:117: warning: Compound IsoSpec::ReverseOrder is not documented. /<>/IsoSpec++/summator.h:26: warning: Compound IsoSpec::SSummator is not documented. /<>/IsoSpec++/summator.h:76: warning: Compound IsoSpec::Summator is not documented. /<>/IsoSpec++/summator.h:99: warning: Compound IsoSpec::TSummator is not documented. /<>/IsoSpec++/operators.h:124: warning: Compound IsoSpec::TableOrder is not documented. /<>/IsoSpec++/pod_vector.h:32: warning: Compound pod_vector is not documented. /<>/IsoSpec++/cwrapper.h:146: warning: Compound ws_match_res is not documented. /<>/IsoSpec++/marginalTrek++.h:386: warning: unable to resolve reference to 'PrecalculatedMarginal::get_eProb' for \ref command d/isospec-fGSO1O/isospec-2.2.1/IsoSpec++/operators.cpp... Preprocessing /<>/IsoSpec++/operators.h... Parsing file /<>/IsoSpec++/operators.h... Preprocessing /<>/IsoSpec++/platform.h... Parsing file /<>/IsoSpec++/platform.h... Preprocessing /<>/IsoSpec++/platform_incl.h... Parsing file /<>/IsoSpec++/platform_incl.h... Preprocessing /<>/IsoSpec++/pod_vector.h... Parsing file /<>/IsoSpec++/pod_vector.h... Preprocessing /<>/IsoSpec++/python-build.cpp... Parsing file /<>/IsoSpec++/python-build.cpp... Preprocessing /<>/IsoSpec++/summator.h... Parsing file /<>/IsoSpec++/summator.h... Preprocessing /<>/IsoSpec++/unity-build.cpp... Parsing file /<>/IsoSpec++/unity-build.cpp... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Building concept list... Computing nesting relations for classes... Associating documentation with classes... Associating documentation with concepts... Associating documentation with modules... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Computing module relations... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating code for file /<>/IsoSpec++/allocator.cpp... Generating code for file /<>/IsoSpec++/allocator.h... Generating code for file /<>/IsoSpec++/btrd.h... Generating code for file /<>/IsoSpec++/conf.h... Generating code for file /<>/IsoSpec++/cwrapper.cpp... Generating code for file /<>/IsoSpec++/cwrapper.h... Generating code for file /<>/IsoSpec++/dirtyAllocator.cpp... Generating code for file /<>/IsoSpec++/dirtyAllocator.h... Generating code for file /<>/IsoSpec++/element_tables.cpp... Generating code for file /<>/IsoSpec++/element_tables.h... Generating code for file /<>/IsoSpec++/fasta.cpp... Generating code for file /<>/isos/<>/IsoSpec++/pod_vector.h:194: warning: Member iterator (typedef) of class pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:195: warning: Member const_iterator (typedef) of class pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:196: warning: Member value_type (typedef) of class pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:197: warning: Member size_type (typedef) of class pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:198: warning: Member reference (typedef) of class pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:199: warning: Member const_reference (typedef) of class pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:39: warning: Member pod_vector(size_t initial_size=16) (function) of class pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:54: warning: Member operator=(pod_vector< T > &&other) (function) of class pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:64: warning: Member pod_vector(pod_vector< T > &&other) (function) of class pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:74: warning: Member pod_vector(unsafe_pod_vector< T > &&other) (function) of class pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:82: warning: Member fast_reserve(size_t n) (function) of class pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:94: warning: Member reserve(size_t n) (function) of class pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:100: warning: Member resize(size_t new_size) (function) of class pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:114: warning: Member resize_and_wipe(size_t new_size) (function) of class pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:122: warning: Member nocheck_push_back(const T &val) noexcept (function) of class pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:129: warning: Member push_back(const T &val) (function) of class pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:137: warning: Member operator[](size_t n) noexcept (function) of class pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:143: warning: Member operator[](size_t n) const noexcept (function) of class pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:149: warning: Member size() const noexcept (function) of class pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:154: warning: Member capacity() const noexcept (function) of class pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:159: warning: Member data() noexcept (function) of class pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:164: warning: Member data() const noexcept (function) of class pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:169: warning: Member empty() const noexcept (function) of class pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:174: warning: Member back() const noexcept (function) of class pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:180: warning: Member pop_back() noexcept (function) of class pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:187: warning: Member swap(pod_vector< T > &other) noexcept (function) of class pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:201: warning: Member begin() noexcept (function) of class pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:202: warning: Member begin() const noexcept (function) of class pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:203: warning: Member cbegin() const noexcept (function) of class pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:204: warning: Member end() noexcept (function) of class pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:205: warning: Member end() const noexcept (function) of class pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:206: warning: Member cend() const noexcept (function) of class pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:208: warning: Member front() const noexcept (function) of class pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:214: warning: Member clear() (function) of class pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:372: warning: Member iterator (typedef) of class unsafe_pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:373: warning: Member const_iterator (typedef) of class unsafe_pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:374: warning: Member value_type (typedef) of class unsafe_pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:375: warning: Member size_type (typedef) of class unsafe_pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:376: warning: Member reference (typedef) of class unsafe_pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:377: warning: Member const_reference (typedef) of class unsafe_pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:234: warning: Member init() (function) of class unsafe_pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:242: warning: Member init(size_t initial_size) (function) of class unsafe_pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:261: warning: Member fast_reserve(size_t n) (function) of class unsafe_pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:272: warning: Member reserve(size_t n) (function) of class unsafe_pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:278: warning: Member resize(size_t new_size) (function) of class unsafe_pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:292: warning: Member resize_and_wipe(size_t new_size) (function) of class unsafe_pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:300: warning: Member nocheck_push_back(const T &val) noexcept (function) of class unsafe_pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:307: warning: Member push_back(const T &val) (function) of class unsafe_pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:315: warning: Member operator[](size_t n) noexcept (function) of class unsafe_pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:321: warning: Member operator[](size_t n) const noexcept (function) of class unsafe_pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:327: warning: Member size() const noexcept (function) of class unsafe_pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:332: warning: Member capacity() const noexcept (function) of class unsafe_pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:337: warning: Member data() noexcept (function) of class unsafe_pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:342: warning: Member data() const noexcept (function) of class unsafe_pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:347: warning: Member empty() const noexcept (function) of class unsafe_pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:352: warning: Member back() const noexcept (function) of class unsafe_pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:358: warning: Member pop_back() noexcept (function) of class unsafe_pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:365: warning: Member swap(pod_vector< T > &other) noexcept (function) of class unsafe_pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:379: warning: Member begin() noexcept (function) of class unsafe_pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:380: warning: Member begin() const noexcept (function) of class unsafe_pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:381: warning: Member cbegin() const noexcept (function) of class unsafe_pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:382: warning: Member end() noexcept (function) of class unsafe_pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:383: warning: Member end() const noexcept (function) of class unsafe_pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:384: warning: Member cend() const noexcept (function) of class unsafe_pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:386: warning: Member front() const noexcept (function) of class unsafe_pod_vector is not documented. /<>/IsoSpec++/pod_vector.h:392: warning: Member clear() (function) of class unsafe_pod_vector is not documented. /<>/IsoSpec++/cwrapper.h:147: warning: Member res1 (variable) of struct ws_match_res is not documented. /<>/IsoSpec++/cwrapper.h:148: warning: Member res2 (variable) of struct ws_match_res is not documented. /<>/IsoSpec++/cwrapper.h:149: warning: Member flow (variable) of struct ws_match_res is not documented. /<>/IsoSpec++/btrd.h:27: warning: Member RealType (typedef) of namespace IsoSpec is not documented. /<>/IsoSpec++/btrd.h:28: warning: Member IntType (typedef) of namespace IsoSpec is not documented. /<>/IsoSpec++/conf.h:22: warning: Member Conf (typedef) of namespace IsoSpec is not documented. /<>/IsoSpec++/allocator.h:26: warning: Member copyConf(const T *source, T *destination, int dim) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/btrd.h:77: warning: Member btrd(IntType _t, RealType p, IntType m, std::mt19937 &urng=random_gen) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/btrd.h:160: warning: Member invert(IntType t, RealType p, std::mt19937 &urng=random_gen) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/btrd.h:189: warning: Member boost_binomial_distribution_variate(IntType t_arg, RealType p_arg, std::mt19937 &urng=random_gen) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/fasta.h:33: warning: Member parse_fasta(const char *fasta, int atomCounts[6]) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/fixedEnvelopes.cpp:134: warning: Member reorder_array(T *arr, size_t *order, size_t size, bool can_destroy=false) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/fixedEnvelopes.h:37: warning: Member AbyssalWassersteinDistanceGrad(FixedEnvelope *const *envelopes, const double *scales, double *ret_gradient, size_t N, double abyss_depth_exp, double abyss_depth_the) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/isoMath.cpp:23: warning: Member release_g_lfact_table() (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/isoMath.cpp:32: warning: Member alloc_lfact_table() (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/isoMath.cpp:47: warning: Member RationalApproximation(double t) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/isoMath.cpp:57: warning: Member NormalCDFInverse(double p) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/isoMath.cpp:65: warning: Member NormalCDFInverse(double p, double mean, double stdev) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/isoMath.cpp:70: warning: Member NormalCDF(double x, double mean, double stdev) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/isoMath.cpp:95: warning: Member NormalPDF(double x, double mean, double stdev) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/isoMath.cpp:104: warning: Member LowerIncompleteGamma2(int a, double x) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/isoMath.cpp:131: warning: Member InverseLowerIncompleteGamma2(int a, double x) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/isoMath.cpp:150: warning: Member random_gen(random_dev()) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/isoMath.cpp:151: warning: Member stdunif(0.0, 1.0) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/isoMath.cpp:153: warning: Member rdvariate_binom(size_t tries, double succ_prob, std::mt19937 &rgen) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/isoMath.h:68: warning: Member InverseChiSquareCDF2(int k, double x) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/isoMath.h:76: warning: Member rdvariate_beta_1_b(double b, std::mt19937 &rgen=random_gen) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/isoSpec++.cpp:355: warning: Member parse_formula(const char *formula, std::vector< double > &isotope_masses, std::vector< double > &isotope_probabilities, int **isotopeNumbers, int **atomCounts, unsigned int *confSize, bool use_nominal_masses) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/marginalTrek++.cpp:149: warning: Member get_loggamma_nominator(int x) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/marginalTrek++.cpp:156: warning: Member verify_atom_cnt(int atomCnt) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/misc.cpp:28: warning: Member quickselect(void **array, int n, int start, int end) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/misc.h:29: warning: Member combinedSum(const int *conf, const std::vector< double > **valuesContainer, int dimNumber) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/misc.h:38: warning: Member combinedSum(const int *conf, const pod_vector< double > **valuesContainer, int dimNumber) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/misc.h:47: warning: Member getConf(void *conf) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/misc.h:54: warning: Member getLProb(void *conf) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/misc.h:61: warning: Member unnormalized_logProb(const int *conf, const double *logProbs, int dim) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/misc.h:71: warning: Member calc_mass(const int *conf, const double *masses, int dim) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/misc.h:85: warning: Member printArray(const T *array, int size, const char *prefix="") (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/misc.h:94: warning: Member printVector(const std::vector< T > &vec) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/misc.h:99: warning: Member printOffsets(const T **array, int size, const T *offset, const char *prefix="") (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/misc.h:108: warning: Member printNestedArray(const T **array, const int *shape, int size) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/misc.h:133: warning: Member dealloc_table(T *tbl, int dim) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/misc.h:142: warning: Member realloc_append(T **array, T what, size_t old_array_size) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/misc.h:151: warning: Member get_order(T *order_array, size_t N) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/misc.h:162: warning: Member get_inverse_order(T *order_array, size_t N) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/misc.h:173: warning: Member impose_order(size_t *O, size_t N, TA *A, TB *B) (function) of namespace IsoSpec is not documented. /<>/IsoSpec++/element_tables.cpp:26: warning: Member isospec_number_of_isotopic_entries (variable) of namespace IsoSpec is not documented. /<>/IsoSpec++/element_tables.cpp:28: warning: Member elem_table_ID[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented. /<>/IsoSpec++/element_tables.cpp:325: warning: Member elem_table_atomicNo[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented. /<>/IsoSpec++/element_tables.cpp:621: warning: Member elem_table_mass[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented. /<>/IsoSpec++/element_tables.cpp:917: warning: Member elem_table_massNo[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented. /<>/IsoSpec++/element_tables.cpp:1213: warning: Member elem_table_extraNeutrons[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented. /<>/IsoSpec++/element_tables.cpp:1509: warning: Member elem_table_element[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented. /<>/IsoSpec++/element_tables.cpp:1805: warning: Member elem_table_symbol[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented. /<>/IsoSpec++/element_tables.cpp:2101: warning: Member elem_table_Radioactive[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented. /<>/IsoSpec++/element_tables.cpp:2397: warning: Member elem_table_probability[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented. /<>/IsoSpec++/element_tables.cpp:2693: warning: Member elem_table_log_probability[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented. /<>/IsoSpec++/fasta.cpp:25: warning: Member aa_isotope_numbers[6] (variable) of namespace IsoSpec is not documented. /<>/IsoSpec++/fasta.cpp:27: warning: Member aa_elem_masses[19] (variable) of namespace IsoSpec is not documented. /<>/IsoSpec++/fasta.cpp:37: warning: Member aa_elem_nominal_masses[19] (variable) of namespace IsoSpec is not documented. /<>/IsoSpec++/fasta.cpp:47: warning: Member aa_elem_probabilities[19] (variable) of namespace IsoSpec is not documented. /<>/IsoSpec++/fasta.cpp:57: warning: Member aa_symbol_to_elem_counts[256 *6] (variable) of namespace IsoSpec is not documented. /<>/IsoSpec++/isoMath.cpp:44: warning: Member g_lfact_table (variable) of namespace IsoSpec is not documented. /<>/IsoSpec++/isoMath.cpp:102: warning: Member sqrt_pi (variable) of namespace IsoSpec is not documented. /<>/IsoSpec++/isoMath.cpp:149: warning: Member random_dev (variable) of namespace IsoSpec is not documented. /<>/IsoSpec++/isoMath.h:53: warning: Member pi (variable) of namespace IsoSpec is not documented. /<>/IsoSpec++/isoMath.h:54: warning: Member logpi (variable) of namespace IsoSpec is not documented. /<>/IsoSpec++/isoMath.h:73: warning: Member random_gen (variable) of namespace IsoSpec is not documented. /<>/IsoSpec++/isoMath.h:74: warning: Member stdunif (variable) of namespace IsoSpec is not documented. /<>/IsoSpec++/marginalTrek++.cpp:53: warning: The following parameters of IsoSpec::writeInitialConfiguration(const int atomCnt, const int isotopeNo, const double *lprobs, int *res) are not documented: parameter 'isotopeNo' parameter 'lprobs' parameter 'res' /<>/IsoSpec++/allocator.h:42: warning: Member Allocator(const int dim, const int tabSize=10000) (function) of class IsoSpec::Allocator is not documented. /<>/IsoSpec++/allocator.h:48: warning: Member shiftTables() (function) of class IsoSpec::Allocator is not documented. /<>/IsoSpec++/allocator.h:50: warning: Member newConf() (function) of class IsoSpec::Allocator is not documented. /<>/IsoSpec++/allocator.h:60: warning: Member makeCopy(const T *conf) (function) of class IsoSpec::Allocator is not documented. /<>/IsoSpec++/operators.h:59: warning: Member ConfEqual(int dim) (function) of class IsoSpec::ConfEqual is not documented. /<>/IsoSpec++/operators.h:61: warning: Member operator()(const int *conf1, const int *conf2) const (function) of class IsoSpec::ConfEqual is not documented. /<>/IsoSpec++/operators.h:79: warning: Member operator()(void *conf1, void *conf2) const (function) of class IsoSpec::ConfOrder is not documented. /<>/IsoSpec++/operators.h:93: warning: Member ConfOrderMarginal(const double *logProbs, int dim) (function) of class IsoSpec::ConfOrderMarginal is not documented. /<>/IsoSpec++/operators.h:95: warning: Member operator()(const Conf conf1, const Conf conf2) (function) of class IsoSpec::ConfOrderMarginal is not documented. /<>/IsoSpec++/operators.h:108: warning: Member ConfOrderMarginalDescending(const double *logProbs, int dim) (function) of class IsoSpec::ConfOrderMarginalDescending is not documented. /<>/IsoSpec++/operators.h:110: warning: Member operator()(const Conf conf1, const Conf conf2) (function) of class IsoSpec::ConfOrderMarginalDescending is not documented. /<>/IsoSpec++/dirtyAllocator.h:36: warning: Member DirtyAllocator(const int dim, const int tabSize=10000) (function) of class IsoSpec::DirtyAllocator is not documented. /<>/IsoSpec++/dirtyAllocator.h:42: warning: Member shiftTables() (function) of class IsoSpec::DirtyAllocator is not documented. /<>/IsoSpec++/dirtyAllocator.h:44: warning: Member newConf() (function) of class IsoSpec::DirtyAllocator is not documented. /<>/IsoSpec++/fixedEnvelopes.h:70: warning: Member FixedEnvelope(const FixedEnvelope &other) (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:71: warning: Member FixedEnvelope(FixedEnvelope &&other) (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:73: warning: Member FixedEnvelope(double *masses, double *probs, size_t confs_no, bool masses_sorted=false, bool probs_sorted=false, double _total_prob=NAN) (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:82: warning: Member operator+(const FixedEnvelope &other) const (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:83: warning: Member operator*(const FixedEnvelope &other) const (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:85: warning: Member confs_no() const (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:86: warning: Member getAllDim() const (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:88: warning: Member masses() const (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:89: warning: Member probs() const (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:90: warning: Member confs() const (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:92: warning: Member release_masses() (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:93: warning: Member release_probs() (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:94: warning: Member release_confs() (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:95: warning: Member release_everything() (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:98: warning: Member mass(size_t i) const (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:99: warning: Member prob(size_t i) const (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:100: warning: Member conf(size_t i) const (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:102: warning: Member sort_by_mass() (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:103: warning: Member sort_by_prob() (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:105: warning: Member get_total_prob() (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:106: warning: Member scale(double factor) (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:107: warning: Member normalize() (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:108: warning: Member shift_mass(double shift) (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:109: warning: Member resample(size_t ionic_current, double beta_bias=1.0) (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:111: warning: Member empiric_average_mass() (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:112: warning: Member empiric_variance() (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:113: warning: Member empiric_stddev() (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:115: warning: Member WassersteinDistance(FixedEnvelope &other) (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:116: warning: Member OrientedWassersteinDistance(FixedEnvelope &other) (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:117: warning: Member AbyssalWassersteinDistance(FixedEnvelope &other, double abyss_depth, double other_scale=1.0) (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:118: warning: Member WassersteinMatch(FixedEnvelope &other, double flow_distance, double other_scale=1.0) (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:125: warning: Member bin(double bin_width=1.0, double middle=0.0) (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:170: warning: Member threshold_init(Iso &&iso, double threshold, bool absolute) (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:172: warning: Member addConfILG(const GenType &generator) (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:181: warning: Member total_prob_init(Iso &&iso, double target_prob, bool trim) (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:216: warning: Member stochastic_init(Iso &&iso, size_t _no_molecules, double _precision, double _beta_bias) (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:121: warning: Member LinearCombination(const std::vector< const FixedEnvelope * > &spectra, const std::vector< double > &intensities) (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:122: warning: Member LinearCombination(const FixedEnvelope *const *spectra, const double *intensities, size_t size) (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:183: warning: Member FromThreshold(Iso &&iso, double threshold, bool absolute, bool tgetConfs=false) (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:194: warning: Member FromThreshold(const Iso &iso, double _threshold, bool _absolute, bool tgetConfs=false) (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:199: warning: Member FromTotalProb(Iso &&iso, double target_total_prob, bool optimize, bool tgetConfs=false) (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:211: warning: Member FromTotalProb(const Iso &iso, double _target_total_prob, bool _optimize, bool tgetConfs=false) (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:218: warning: Member FromStochastic(Iso &&iso, size_t _no_molecules, double _precision=0.9999, double _beta_bias=5.0, bool tgetConfs=false) (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:230: warning: Member FromStochastic(const Iso &iso, size_t _no_molecules, double _precision=0.9999, double _beta_bias=5.0, bool tgetConfs=false) (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:235: warning: Member Binned(Iso &&iso, double target_total_prob, double bin_width, double bin_middle=0.0) (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:236: warning: Member Binned(const Iso &iso, double target_total_prob, double bin_width, double bin_middle=0.0) (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:132: warning: Member store_conf(const T &generator) (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:139: warning: Member store_conf(double _mass, double _prob) (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:152: warning: Member swap(size_t idx1, size_t idx2, ISOSPEC_MAYBE_UNUSED int *conf_swapspace) (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:166: warning: Member reallocate_memory(size_t new_size) (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:167: warning: Member slow_reallocate_memory(size_t new_size) (function) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:42: warning: Member _masses (variable) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:43: warning: Member _probs (variable) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:44: warning: Member _confs (variable) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:45: warning: Member _confs_no (variable) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:46: warning: Member allDim (variable) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:47: warning: Member sorted_by_mass (variable) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:48: warning: Member sorted_by_prob (variable) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:49: warning: Member total_prob (variable) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:50: warning: Member current_size (variable) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:51: warning: Member tmasses (variable) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:52: warning: Member tprobs (variable) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:53: warning: Member tconfs (variable) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:54: warning: Member allDimSizeofInt (variable) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/fixedEnvelopes.h:241: warning: Member AbyssalWassersteinDistanceGrad(FixedEnvelope *const *envelopes, const double *scales, double *ret_gradient, size_t N, double abyss_depth_exp, double abyss_depth_the) (friend) of class IsoSpec::FixedEnvelope is not documented. /<>/IsoSpec++/isoSpec++.h:90: warning: Member Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) (function) of class IsoSpec::Iso is not documented. /<>/IsoSpec++/isoSpec++.h:70: warning: Member doMarginalsNeedSorting() const (function) of class IsoSpec::Iso is not documented. /<>/IsoSpec++/isoSpec++.h:110: warning: Found unknown command '\use_nominal_masses' /<>/IsoSpec++/isoSpec++.h:111: warning: Found unknown command '\add_water' /<>/IsoSpec++/isoSpec++.h:106: warning: The following parameters of IsoSpec::Iso::FromFASTA(const char *fasta, bool use_nominal_masses=false, bool add_water=true) are not documented: parameter 'use_nominal_masses' parameter 'add_water' /<>/IsoSpec++/isoSpec++.h:90: warning: Member Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) (function) of class IsoSpec::Iso is not documented. /<>/IsoSpec++/isoSpec++.h:186: warning: Member mode_lprob (variable) of class IsoSpec::IsoGenerator is not documented. /<>/IsoSpec++/isoSpec++.h:70: warning: Member doMarginalsNeedSorting() const (function) of class IsoSpec::Iso is not documented. /<>/IsoSpec++/isoSpec++.h:483: warning: Member get_currentLThreshold() const (function) of class IsoSpec::IsoLayeredGenerator is not documented. /<>/IsoSpec++/isoSpec++.h:485: warning: Member IsoLayeredGenerator(Iso &&iso, int _tabSize=1000, int _hashSize=1000, bool reorder_marginals=true, double t_prob_hint=0.99) (function) of class IsoSpec::IsoLayeredGenerator is not documented. /<>/IsoSpec++/isoSpec++.h:499: warning: Member advanceToNextConfigurationWithinLayer() (function) of class IsoSpec::IsoLayeredGenerator is not documented. /<>/IsoSpec++/isoSpec++.h:534: warning: Member nextLayer(double offset) (function) of class IsoSpec::IsoLayeredGenerator is not documented. /<>/IsoSpec++/isoSpec++.h:90: warning: Member Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) (function) of class IsoSpec::Iso is not documented. /<>/IsoSpec++/isoSpec++.h:186: warning: Member mode_lprob (variable) of class IsoSpec::IsoGenerator is not documented. /<>/IsoSpec++/isoSpec++.h:70: warning: Member doMarginalsNeedSorting() const (function) of class IsoSpec::Iso is not documented. /<>/IsoSpec++/isoSpec++.h:90: warning: Member Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) (function) of class IsoSpec::Iso is not documented. /<>/IsoSpec++/isoSpec++.h:186: warning: Member mode_lprob (variable) of class IsoSpec::IsoGenerator is not documented. /<>/IsoSpec++/isoSpec++.h:70: warning: Member doMarginalsNeedSorting() const (function) of class IsoSpec::Iso is not documented. /<>/IsoSpec++/isoSpec++.h:553: warning: Member IsoStochasticGenerator(Iso &&iso, size_t no_molecules, double precision=0.9999, double beta_bias=5.0) (function) of class IsoSpec::IsoStochasticGenerator is not documented. /<>/IsoSpec++/isoSpec++.h:555: warning: Member count() const (function) of class IsoSpec::IsoStochasticGenerator is not documented. /<>/IsoSpec++/isoSpec++.h:90: warning: Member Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) (function) of class IsoSpec::Iso is not documented. /<>/IsoSpec++/isoSpec++.h:186: warning: Member mode_lprob (variable) of class IsoSpec::IsoGenerator is not documented. /<>/IsoSpec++/isoSpec++.h:70: warning: Member doMarginalsNeedSorting() const (function) of class IsoSpec::Iso is not documented. /<>/IsoSpec++/isoSpec++.h:90: warning: Member Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) (function) of class IsoSpec::Iso is not documented. /<>/IsoSpec++/isoSpec++.h:186: warning: Member mode_lprob (variable) of class IsoSpec::IsoGenerator is not documented. /<>/IsoSpec++/isoSpec++.h:70: warning: Member doMarginalsNeedSorting() const (function) of class IsoSpec::Iso is not documented. /<>/IsoSpec++/isoSpec++.h:339: warning: argument 'tabSize' of command @param is not found in the argument list of IsoSpec::IsoThresholdGenerator::IsoThresholdGenerator(Iso &&iso, double _threshold, bool _absolute=true, int _tabSize=1000, int _hashSize=1000, bool reorder_marginals=true) /<>/IsoSpec++/isoSpec++.h:339: warning: argument 'hashSize' of command @param is not found in the argument list of IsoSpec::IsoThresholdGenerator::IsoThresholdGenerator(Iso &&iso, double _threshold, bool _absolute=true, int _tabSize=1000, int _hashSize=1000, bool reorder_marginals=true) /<>/IsoSpec++/isoSpec++.h:339: warning: The following parameters of IsoSpec::IsoThresholdGenerator::IsoThresholdGenerator(Iso &&iso, double _threshold, bool _absolute=true, int _tabSize=1000, int _hashSize=1000, bool reorder_marginals=true) are not documented: parameter '_tabSize' parameter '_hashSize' parameter 'reorder_marginals' /<>/IsoSpec++/operators.h:34: warning: Member KeyHasher(int dim) (function) of class IsoSpec::KeyHasher is not documented. /<>/IsoSpec++/operators.h:36: warning: Member operator()(const int *conf) const noexcept (function) of class IsoSpec::KeyHasher is not documented. /<>/IsoSpec++/marginalTrek++.h:386: warning: unable to resolve reference to 'PrecalculatedMarginal::get_eProb' for \ref command /<>/IsoSpec++/marginalTrek++.h:90: warning: Member get_lProbs() const (function) of class IsoSpec::Marginal is not documented. /<>/IsoSpec++/marginalTrek++.h:168: warning: Member ensureModeConf() (function) of class IsoSpec::Marginal is not documented. /<>/IsoSpec++/marginalTrek++.h:160: warning: Member logProb(Conf conf) const (function) of class IsoSpec::Marginal is not documented. /<>/IsoSpec++/marginalTrek++.h:368: warning: The following parameter of IsoSpec::LayeredMarginal::LayeredMarginal(Marginal &&m, int tabSize=1000, int hashSize=1000) is not documented: parameter 'm' /<>/IsoSpec++/marginalTrek++.h:378: warning: The following parameter of IsoSpec::LayeredMarginal::extend(double new_threshold, bool do_sort=true) is not documented: parameter 'do_sort' /<>/IsoSpec++/marginalTrek++.h:386: warning: unable to resolve reference to 'PrecalculatedMarginal::get_eProb' for \ref command /<>/IsoSpec++/marginalTrek++.h:90: warning: Member get_lProbs() const (function) of class IsoSpec::Marginal is not documented. /<>/IsoSpec++/marginalTrek++.h:168: warning: Member ensureModeConf() (function) of class IsoSpec::Marginal is not documented. /<>/IsoSpec++/marginalTrek++.h:160: warning: Member logProb(Conf conf) const (function) of class IsoSpec::Marginal is not documented. /<>/IsoSpec++/marginalTrek++.h:59: warning: found documented return type for IsoSpec::Marginal::Marginal that does not return anything /<>/IsoSpec++/marginalTrek++.h:233: warning: Member conf_lprobs() const (function) of class IsoSpec::MarginalTrek is not documented. /<>/IsoSpec++/marginalTrek++.h:234: warning: Member conf_masses() const (function) of class IsoSpec::MarginalTrek is not documented. /<>/IsoSpec++/marginalTrek++.h:235: warning: Member confs() const (function) of class IsoSpec::MarginalTrek is not documented. /<>/IsoSpec++/marginalTrek++.h:90: warning: Member get_lProbs() const (function) of class IsoSpec::Marginal is not documented. /<>/IsoSpec++/marginalTrek++.h:168: warning: Member ensureModeConf() (function) of class IsoSpec::Marginal is not documented. /<>/IsoSpec++/marginalTrek++.h:160: warning: Member logProb(Conf conf) const (function) of class IsoSpec::Marginal is not documented. /<>/IsoSpec++/marginalTrek++.h:199: warning: The following parameter of IsoSpec::MarginalTrek::MarginalTrek(Marginal &&m, int tabSize=1000, int hashSize=1000) is not documented: parameter 'm' /<>/IsoSpec++/operators.h:145: warning: Member OrderMarginalsBySizeDecresing(T const *const *const MT_) (function) of class IsoSpec::OrderMarginalsBySizeDecresing is not documented. /<>/IsoSpec++/operators.h:146: warning: Member operator()(int m1, int m2) (function) of class IsoSpec::OrderMarginalsBySizeDecresing is not documented. /<>/IsoSpec++/marginalTrek++.h:90: warning: Member get_lProbs() const (function) of class IsoSpec::Marginal is not documented. /<>/IsoSpec++/marginalTrek++.h:168: warning: Member ensureModeConf() (function) of class IsoSpec::Marginal is not documented. /<>/IsoSpec++/marginalTrek++.h:254: warning: Member configurations (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /<>/IsoSpec++/marginalTrek++.h:255: warning: Member confs (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /<>/IsoSpec++/marginalTrek++.h:256: warning: Member no_confs (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /<>/IsoSpec++/marginalTrek++.h:257: warning: Member masses (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /<>/IsoSpec++/marginalTrek++.h:258: warning: Member lProbs (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /<>/IsoSpec++/marginalTrek++.h:259: warning: Member probs (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /<>/IsoSpec++/marginalTrek++.h:260: warning: Member allocator (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /<>/IsoSpec++/marginalTrek++.h:160: warning: Member logProb(Conf conf) const (function) of class IsoSpec::Marginal is not documented. /<>/IsoSpec++/marginalTrek++.h:264: warning: argument 'Marginal' of command @param is not found in the argument list of IsoSpec::PrecalculatedMarginal::PrecalculatedMarginal(Marginal &&m, double lCutOff, bool sort=true, int tabSize=1000, int hashSize=1000) /<>/IsoSpec++/marginalTrek++.h:264: warning: The following parameters of IsoSpec::PrecalculatedMarginal::PrecalculatedMarginal(Marginal &&m, double lCutOff, bool sort=true, int tabSize=1000, int hashSize=1000) are not documented: parameter 'm' parameter 'tabSize' parameter 'hashSize' /<>/IsoSpec++/marginalTrek++.h:264: warning: found documented return type for IsoSpec::PrecalculatedMarginal::PrecalculatedMarginal that does not return anything /<>/IsoSpec++/conf.h:30: warning: Member ProbAndConfPtr(double p, Conf c) (function) of struct IsoSpec::ProbAndConfPtr is not documented. /<>/IsoSpec++/conf.h:32: warning: Member operator<(const ProbAndConfPtr &other) const (function) of struct IsoSpec::ProbAndConfPtr is not documented. /<>/IsoSpec++/conf.h:27: warning: Member first (variable) of struct IsoSpec::ProbAndConfPtr is not documented. /<>/IsoSpec++/conf.h:28: warning: Member second (variable) of struct IsoSpec::ProbAndConfPtr is not documented. /<>/IsoSpec++/operators.h:121: warning: Member operator()(const T a, const T b) const (function) of class IsoSpec::ReverseOrder is not documented. /<>/IsoSpec++/summator.h:35: warning: Member SSummator(const SSummator &other) (function) of class IsoSpec::SSummator is not documented. /<>/IsoSpec++/summator.h:39: warning: Member add(double x) (function) of class IsoSpec::SSummator is not documented. /<>/IsoSpec++/summator.h:61: warning: Member get() (function) of class IsoSpec::SSummator is not documented. /<>/IsoSpec++/summator.h:85: warning: Member add(double what) (function) of class IsoSpec::Summator is not documented. /<>/IsoSpec++/summator.h:93: warning: Member get() (function) of class IsoSpec::Summator is not documented. /<>/IsoSpec++/operators.h:128: warning: Member TableOrder(const T *_tbl) (function) of class IsoSpec::TableOrder is not documented. /<>/IsoSpec++/operators.h:129: warning: Member operator()(unsigned int i, unsigned int j) (function) of class IsoSpec::TableOrder is not documented. /<>/IsoSpec++/summator.h:107: warning: Member add(double what) (function) of class IsoSpec::TSummator is not documented. /<>/IsoSpec++/summator.h:111: warning: Member get() (function) of class IsoSpec::TSummator is not documented. pec-2.2.1/IsoSpec++/fasta.h... Generating code for file /<>/IsoSpec++/fixedEnvelopes.cpp... Generating code for file /<>/IsoSpec++/fixedEnvelopes.h... Generating code for file /<>/IsoSpec++/isoMath.cpp... Generating code for file /<>/IsoSpec++/isoMath.h... Generating code for file /<>/IsoSpec++/isoSpec++.cpp... Generating code for file /<>/IsoSpec++/isoSpec++.h... Generating code for file /<>/IsoSpec++/marginalTrek++.cpp... Generating code for file /<>/IsoSpec++/marginalTrek++.h... Generating code for file /<>/IsoSpec++/misc.cpp... Generating code for file /<>/IsoSpec++/misc.h... Generating code for file /<>/IsoSpec++/mman.cpp... Generating code for file /<>/IsoSpec++/mman.h... Generating code for file /<>/IsoSpec++/operators.cpp... Generating code for file /<>/IsoSpec++/operators.h... Generating code for file /<>/IsoSpec++/platform.h... Generating code for file /<>/IsoSpec++/platform_incl.h... Generating code for file /<>/IsoSpec++/pod_vector.h... Generating code for file /<>/IsoSpec++/python-build.cpp... Generating code for file /<>/IsoSpec++/summator.h... Generating code for file /<>/IsoSpec++/unity-build.cpp... Generating file documentation... Generating page documentation... Generating group documentation... Generating class documentation... Generating docs for compound pod_vector... Generating docs for compound unsafe_pod_vector... Generating docs for compound ws_match_res... Generating concept documentation... Generating module documentation... Generating namespace documentation... Generating docs for namespace IsoSpec Generating docs for compound IsoSpec::Allocator... Generating docs for compound IsoSpec::ConfEqual... Generating docs for compound IsoSpec::ConfOrder... Generating docs for compound IsoSpec::ConfOrderMarginal... Generating docs for compound IsoSpec::ConfOrderMarginalDescending... Generating docs for compound IsoSpec::DirtyAllocator... Generating docs for compound IsoSpec::FixedEnvelope... Generating docs for compound IsoSpec::Iso... Generating docs for compound IsoSpec::IsoGenerator... Generating docs for compound IsoSpec::IsoLayeredGenerator... Generating docs for compound IsoSpec::IsoOrderedGenerator... Generating docs for compound IsoSpec::IsoStochasticGenerator... Generating docs for compound IsoSpec::IsoThresholdGenerator... Generating docs for compound IsoSpec::KeyHasher... Generating docs for compound IsoSpec::LayeredMarginal... Generating docs for compound IsoSpec::Marginal... Generating docs for compound IsoSpec::MarginalTrek... Generating docs for compound IsoSpec::OrderMarginalsBySizeDecresing... Generating docs for compound IsoSpec::PrecalculatedMarginal... Generating docs for compound IsoSpec::ProbAndConfPtr... Generating docs for compound IsoSpec::ReverseOrder... Generating docs for compound IsoSpec::SSummator... Generating docs for compound IsoSpec::Summator... Generating docs for compound IsoSpec::TableOrder... Generating docs for compound IsoSpec::TSummator... Generating graph info page... Generating directory documentation... Generating index page... Generating page index... Generating topic index... Generating module index... Generating module member index... Generating namespace index... Generating namespace member index... Generating concept index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... Running plantuml with JAVA... type lookup cache used 3025/65536 hits=16502 misses=3117 symbol lookup cache used 2874/65536 hits=21953 misses=2874 finished... make[5]: Leaving directory '/<>/obj-s390x-linux-gnu' [100%] Built target html_doc make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/obj-s390x-linux-gnu/CMakeFiles 0 make[3]: Leaving directory '/<>/obj-s390x-linux-gnu' make[2]: Leaving directory '/<>/obj-s390x-linux-gnu' dh_auto_build -O--buildsyste=cmake -- pdf_doc cd obj-s390x-linux-gnu && make -j4 "INSTALL=install --strip-program=true" pdf_doc VERBOSE=1 make[2]: Entering directory '/<>/obj-s390x-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-s390x-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 pdf_doc make[3]: Entering directory '/<>/obj-s390x-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-s390x-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-s390x-linux-gnu/CMakeFiles 1 make -f CMakeFiles/Makefile2 man/CMakeFiles/pdf_doc.dir/all make[4]: Entering directory '/<>/obj-s390x-linux-gnu' make -f man/CMakeFiles/pdf_doc.dir/build.make man/CMakeFiles/pdf_doc.dir/depend make[5]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/man /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/man /<>/obj-s390x-linux-gnu/man/CMakeFiles/pdf_doc.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f man/CMakeFiles/pdf_doc.dir/build.make man/CMakeFiles/pdf_doc.dir/build make[5]: Entering directory '/<>/obj-s390x-linux-gnu' [100%] Doxygen-based developer pdf documentation generation cd /<>/man/latex && make make[6]: Entering directory '/<>/man/latex' make[6]: warning: jobserver unavailable: using -j1. 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LaTeX Warning: Reference `python-build_8cpp_source' on page 7 undefined on inpu t line 32. LaTeX Warning: Reference `summator_8h_source' on page 7 undefined on input line 33. LaTeX Warning: Reference `unity-build_8cpp_source' on page 7 undefined on input line 34. ) [7] [8] Chapter 5. (./namespace_iso_spec.tex (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1phv.fd) [9] [10] Overfull \hbox (152.89105pt too wide) in paragraph at lines 201--203 []\T1/phv/m/n/10 const dou-ble [] = 1.[]144729885849400174143427351353058711647 294812915311571513623071472137769884826079783623270275489708 (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) [11] [12] [13] [14] [15] [16] [17] [18] Package longtable Warning: Column widths have changed (longtable) in table 5.1 on input line 663. [19] [20] Underfull \hbox (badness 10000) in paragraph at lines 871--872 \T1/pcr/m/n/8 ISOSPEC[]_[][]C[]_[][]API const size[]_[]t Iso[]Spec[]::isospec[] _[]number[]_[]of[]_[]isotopic[]_[]entries = ISOSPEC[]_[][]NUMBER[]_[][]OF[]_[][ ] [21] Overfull \hbox (173.55629pt too wide) in paragraph at lines 881--882 \T1/pcr/m/n/8 const double Iso[]Spec[]::logpi = 1.[]144729885849400174143427351 353058711647294812915311571513623071472137769884826079783623270275489708 ) [22] Chapter 6. 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[52]) (./class_iso_spec_1_1_iso_layered_generator.tex <./class_iso_spec_1_1_iso _layered_generator.pdf> [53] [54] [55] Underfull \hbox (badness 10000) detected at line 177 [][][] [56] Underfull \hbox (badness 10000) in paragraph at lines 192--193 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE bool Iso[]Spec[]::[]Iso[]Layered []Generator[]::advance[]To[]Next[]Configuration[]Within[]Layer Underfull \hbox (badness 10000) in paragraph at lines 230--231 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Layer ed[]Generator[]::lprob ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 236 [][][] Underfull \hbox (badness 10000) in paragraph at lines 251--252 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Layer ed[]Generator[]::mass ( ) const [inline], [final], [57] Underfull \hbox (badness 10000) detected at line 257 [][][] Underfull \hbox (badness 10000) in paragraph at lines 282--283 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Layer ed[]Generator[]::prob ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 288 [][][] ) (./class_iso_spec_1_1_iso_ordered_generator.tex <./class_iso_spec_1_1_iso_ord ered_generator.pdf> [58] [59] [60] [61] Underfull \hbox (badness 10000) detected at line 188 [][][] Package longtable Warning: Column widths have changed (longtable) in table 6.4 on input line 213. ) (./class_iso_spec_1_1_iso_stochastic_generator.tex <./class_iso_spec_1_1_iso_ stochastic_generator.pdf> [62] [63] [64] Underfull \hbox (badness 10000) in paragraph at lines 147--148 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE bool Iso[]Spec[]::[]Iso[]Stochas tic[]Generator[]::advance[]To[]Next[]Configuration ( ) Underfull \hbox (badness 10000) detected at line 153 [][][] [65] Underfull \hbox (badness 10000) detected at line 202 [][][] Underfull \hbox (badness 10000) in paragraph at lines 217--218 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Stoch astic[]Generator[]::mass ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 223 [][][] Underfull \hbox (badness 10000) in paragraph at lines 238--239 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Stoch astic[]Generator[]::prob ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 244 [][][] ) (./class_iso_spec_1_1_iso_threshold_generator.tex <./class_iso_spec_1_1_iso_t hreshold_generator.pdf> [66] [67] [68] [69] Package longtable Warning: Column widths have changed (longtable) in table 6.5 on input line 173. 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[87] Underfull \hbox (badness 10000) detected at line 191 [][][] Package longtable Warning: Column widths have changed (longtable) in table 6.11 on input line 214. [88] Underfull \hbox (badness 10000) detected at line 215 [][][] ) (./class_iso_spec_1_1_order_marginals_by_size_decresing.tex) (./classpod__vector.tex [89] [90] [91] [92] [93] [94] [95]) (./class_iso_spec_1_1_precalculated_marginal.tex <./class_iso_spec_1_1_precalcu lated_marginal.pdf> [96] [97] [98] Package longtable Warning: Column widths have changed (longtable) in table 6.12 on input line 166. Underfull \hbox (badness 10000) detected at line 167 [][][] [99] Package longtable Warning: Column widths have changed (longtable) in table 6.13 on input line 205. Underfull \hbox (badness 10000) detected at line 206 [][][] Package longtable Warning: Column widths have changed (longtable) in table 6.14 on input line 227. 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(./allocator_8cpp_source.tex) (./allocator_8h_source.tex [117]) (./btrd_8h_source.tex [118] [119] [120]) (./conf_8h_source.tex) (./cwrapper_8cpp_source.tex [121] [122] [123] [124] Overfull \hbox (44.55553pt too wide) in paragraph at lines 329--329 []\T1/pcr/m/n/7 reinterpret_cast<[][]*[]>[](tabulator1)->WassersteinDistance(*[ ]reinterpret_cast<[][]*[]>[](tabulator2)); Overfull \hbox (78.1555pt too wide) in paragraph at lines 341--341 []\T1/pcr/m/n/7 reinterpret_cast<[][]*[]>[](tabulator1)->OrientedWassersteinDis tance(*[]reinterpret_cast<[][]*[]>[](tabulator2)); Overfull \hbox (69.75551pt too wide) in paragraph at lines 351--351 []\T1/pcr/m/n/7 reinterpret_cast<[][]*[]>[](tabulator1)->AbyssalWassersteinDist ance(*[]reinterpret_cast<[][]*[]>[](tabulator2), Overfull \hbox (27.75554pt too wide) in paragraph at lines 364--364 []\T1/pcr/m/n/7 reinterpret_cast<[][]*[]>[](tabulator1)->WassersteinMatch(*[]re interpret_cast<[][]*[]>[](tabulator2), [125] Overfull \hbox (40.35553pt too wide) in paragraph at lines 374--374 []\T1/pcr/m/n/7 ((*[]reinterpret_cast<[][]*[]>[](tabulator1))+(*[]reinterpret_c ast<[][]*[]>[](tabulator2)))); Overfull \hbox (40.35553pt too wide) in paragraph at lines 380--380 []\T1/pcr/m/n/7 ((*[]reinterpret_cast<[][]*[]>[](tabulator1))*(*[]reinterpret_c ast<[][]*[]>[](tabulator2)))); [126]) (./cwrapper_8h_source.tex [127] [128]) (./dirty_allocator_8cpp_source.tex [129]) (./dirty_allocator_8h_source.tex) (./element__tables_8cpp_source.tex [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] [162] [163] [164]) (./element__tables_8h_source.tex) (./fasta_8cpp_source.tex [165] [166] [167] [168]) (./fasta_8h_source.tex [169]) (./fixed_envelopes_8cpp_source.tex [170] [171] [172] [173] [174] [175] [176] [177] [178] [179] [180] [181] [182] [183]) (./fixed_envelopes_8h_source.tex [184] [185] [186]) (./iso_math_8cpp_source.tex [187] [188]) (./iso_math_8h_source.tex [189]) (./iso_spec_09_09_8cpp_source.tex [190] [191] [192] [193] [194] Overfull \hbox (15.15555pt too wide) in paragraph at lines 441--441 \T1/pcr/m/n/7 ----------------------------------------------------------------- -----------------------------------------[] [195] Overfull \hbox (15.15555pt too wide) in paragraph at lines 477--477 \T1/pcr/m/n/7 ----------------------------------------------------------------- -----------------------------------------[] [196] [197] Overfull \hbox (73.9555pt too wide) in paragraph at lines 654--654 \T1/pcr/m/n/7 ----------------------------------------------------------------- -------------------------------------------------------[] [198] [199] Overfull \hbox (73.9555pt too wide) in paragraph at lines 814--814 \T1/pcr/m/n/7 ----------------------------------------------------------------- -------------------------------------------------------[] [200]) (./iso_spec_09_09_8h_source.tex [201] [202] [203] [204] [205] [206]) (./marginal_trek_09_09_8cpp_source.tex [207] [208] [209] [210] [211] [212] [213] [214]) (./marginal_trek_09_09_8h_source.tex [215] [216] [217] [218]) (./misc_8cpp_source.tex [219]) (./misc_8h_source.tex [220] [221]) (./mman_8cpp_source.tex [222] [223]) (./mman_8h_source.tex [224]) (./operators_8cpp_source.tex [225]) (./operators_8h_source.tex [226] [227]) (./platform_8h_source.tex [228]) (./platform__incl_8h_source.tex) (./pod__vector_8h_source.tex [229] [230] [231] [232] [233]) (./python-build_8cpp_source.tex) (./summator_8h_source.tex [234] [235]) (./unity-build_8cpp_source.tex) [236] No file refman.ind. Package longtable Warning: Table widths have changed. Rerun LaTeX. (./refman.aux) LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. Package rerunfilecheck Warning: File `refman.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ) (see the transcript file for additional information) Output written on refman.pdf (238 pages, 940737 bytes). Transcript written on refman.log. makeindex refman.idx This is makeindex, version 2.17 [TeX Live 2023] (kpathsea + Thai support). Scanning input file refman.idx....done (815 entries accepted, 0 rejected). Sorting entries.........done (8611 comparisons). Generating output file refman.ind....done (1125 lines written, 0 warnings). Output written in refman.ind. 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(./namespaces.tex) [1] [2] Chapter 2. (./hierarchy.tex) [3] [4] Chapter 3. (./annotated.tex) [5] [6] Chapter 4. (./files.tex) [7] [8] Chapter 5. (./namespace_iso_spec.tex (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1phv.fd) [9] [10] Overfull \hbox (152.89105pt too wide) in paragraph at lines 201--203 []\T1/phv/m/n/10 const dou-ble [] = 1.[]144729885849400174143427351353058711647 294812915311571513623071472137769884826079783623270275489708 [11] [12] [13] [14] [15] [16] [17] [18] Package longtable Warning: Column widths have changed (longtable) in table 5.1 on input line 663. [19] [20] Underfull \hbox (badness 10000) in paragraph at lines 871--872 \T1/pcr/m/n/8 ISOSPEC[]_[][]C[]_[][]API const size[]_[]t Iso[]Spec[]::isospec[] _[]number[]_[]of[]_[]isotopic[]_[]entries = ISOSPEC[]_[][]NUMBER[]_[][]OF[]_[][ ] [21] Overfull \hbox (173.55629pt too wide) in paragraph at lines 881--882 \T1/pcr/m/n/8 const double Iso[]Spec[]::logpi = 1.[]144729885849400174143427351 353058711647294812915311571513623071472137769884826079783623270275489708 ) [22] Chapter 6. (./class_iso_spec_1_1_allocator.tex [23]) (./class_iso_spec_1_1_conf_equal.tex [24]) (./class_iso_spec_1_1_conf_order.tex) (./class_iso_spec_1_1_conf_order_marginal.tex [25]) (./class_iso_spec_1_1_conf_order_marginal_descending.tex [26]) (./class_iso_spec_1_1_dirty_allocator.tex [27]) (./class_iso_spec_1_1_fixed_envelope.tex [28] Underfull \hbox (badness 1072) in paragraph at lines 89--91 []\T1/phv/m/n/10 static [] [] ([] &&iso, dou-ble target[]_[]total[]_[]prob, boo l op-ti-mize, bool tget[] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38] [39]) (./class_iso_spec_1_1_iso.tex <./class_iso_spec_1_1_iso.pdf> [40] [41] [42] [43] [44] [45] [46] [47]) (./class_iso_spec_1_1_iso_generator.tex <./class_iso_ spec_1_1_iso_generator.pdf> [48] [49] [50] Underfull \hbox (badness 10000) detected at line 175 [][][] [51] Underfull \hbox (badness 10000) detected at line 206 [][][] Overfull \hbox (30.52501pt too wide) in paragraph at lines 211--212 []\T1/phv/m/n/10 Reimplemented in [], [], and []. 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[52]) (./class_iso_spec_1_1_iso_layered_generator.tex <./class_iso_spec_1_1_iso _layered_generator.pdf> [53] [54] [55] Underfull \hbox (badness 10000) detected at line 177 [][][] [56] Underfull \hbox (badness 10000) in paragraph at lines 192--193 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE bool Iso[]Spec[]::[]Iso[]Layered []Generator[]::advance[]To[]Next[]Configuration[]Within[]Layer Underfull \hbox (badness 10000) in paragraph at lines 230--231 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Layer ed[]Generator[]::lprob ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 236 [][][] Underfull \hbox (badness 10000) in paragraph at lines 251--252 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Layer ed[]Generator[]::mass ( ) const [inline], [final], [57] Underfull \hbox (badness 10000) detected at line 257 [][][] Underfull \hbox (badness 10000) in paragraph at lines 282--283 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Layer ed[]Generator[]::prob ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 288 [][][] ) (./class_iso_spec_1_1_iso_ordered_generator.tex <./class_iso_spec_1_1_iso_ord ered_generator.pdf> [58] [59] [60] [61] Underfull \hbox (badness 10000) detected at line 188 [][][] ) (./class_iso_spec_1_1_iso_stochastic_generator.tex <./class_iso_spec_1_1_iso_ stochastic_generator.pdf> [62] [63] [64] Underfull \hbox (badness 10000) in paragraph at lines 147--148 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE bool Iso[]Spec[]::[]Iso[]Stochas tic[]Generator[]::advance[]To[]Next[]Configuration ( ) Underfull \hbox (badness 10000) detected at line 153 [][][] [65] Underfull \hbox (badness 10000) detected at line 202 [][][] Underfull \hbox (badness 10000) in paragraph at lines 217--218 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Stoch astic[]Generator[]::mass ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 223 [][][] Underfull \hbox (badness 10000) in paragraph at lines 238--239 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Stoch astic[]Generator[]::prob ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 244 [][][] ) (./class_iso_spec_1_1_iso_threshold_generator.tex <./class_iso_spec_1_1_iso_t hreshold_generator.pdf> [66] [67] [68] [69] Overfull \hbox (18.89209pt too wide) in paragraph at lines 195--196 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE bool Iso[]Spec[]::[]Iso[]Thresho ld[]Generator[]::advance[]To[]Next[]Configuration ( ) [inline], Underfull \hbox (badness 10000) detected at line 201 [][][] Underfull \hbox (badness 10000) in paragraph at lines 244--245 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Thres hold[]Generator[]::lprob ( ) const [inline], [final], [70] Underfull \hbox (badness 10000) detected at line 250 [][][] Underfull \hbox (badness 10000) in paragraph at lines 265--266 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Thres hold[]Generator[]::mass ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 271 [][][] Underfull \hbox (badness 10000) in paragraph at lines 286--287 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Thres hold[]Generator[]::prob ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 292 [][][] [71]) (./class_iso_spec_1_1_key_hasher.tex) (./class_iso_spec_1_1_layered_marginal.tex [72] <./class_iso_spec_1_1_layered_m arginal.pdf> [73] [74] Overfull \vbox (7.19118pt too high) has occurred while \output is active [75] Underfull \hbox (badness 10000) detected at line 168 [][][] [76] Underfull \hbox (badness 10000) detected at line 297 [][][] ) (./class_iso_spec_1_1_marginal.tex <./class_iso_spec_1_1_marginal.pdf> [77] [78] Underfull \hbox (badness 10000) detected at line 119 [][][] [79] Underfull \hbox 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(./class_iso_spec_1_1_precalculated_marginal.tex <./class_iso_spec_1_1_precalcu lated_marginal.pdf> [96] [97] [98] Underfull \hbox (badness 10000) detected at line 167 [][][] [99] Underfull \hbox (badness 10000) detected at line 206 [][][] Underfull \hbox (badness 10000) detected at line 228 [][][] Underfull \hbox (badness 10000) detected at line 245 [][][] [100] Underfull \hbox (badness 10000) detected at line 267 [][][] Underfull \hbox (badness 10000) detected at line 284 [][][] Underfull \hbox (badness 10000) detected at line 301 [][][] [101] Underfull \hbox (badness 10000) detected at line 323 [][][] Underfull \hbox (badness 10000) detected at line 340 [][][] Underfull \hbox (badness 10000) detected at line 357 [][][] [102]) (./struct_iso_spec_1_1_prob_and_conf_ptr.tex [103]) (./class_iso_spec_1_1_reverse_order.tex [104]) (./class_iso_spec_1_1_s_summator.tex [105]) (./class_iso_spec_1_1_summator.tex [106]) (./class_iso_spec_1_1_table_order.tex [107]) (./class_iso_spec_1_1_t_summator.tex [108]) (./classunsafe__pod__vector.tex [109] [110] [111] [112] [113] [114]) (./structws__match__res.tex [115]) [116] Chapter 7. (./allocator_8cpp_source.tex) (./allocator_8h_source.tex [117]) (./btrd_8h_source.tex [118] [119] [120]) (./conf_8h_source.tex) (./cwrapper_8cpp_source.tex [121] [122] [123] [124] Overfull \hbox (44.55553pt too wide) in paragraph at lines 329--329 []\T1/pcr/m/n/7 reinterpret_cast<[][]*[]>[](tabulator1)->WassersteinDistance(*[ ]reinterpret_cast<[][]*[]>[](tabulator2)); Overfull \hbox (78.1555pt too wide) in paragraph at lines 341--341 []\T1/pcr/m/n/7 reinterpret_cast<[][]*[]>[](tabulator1)->OrientedWassersteinDis tance(*[]reinterpret_cast<[][]*[]>[](tabulator2)); Overfull \hbox (69.75551pt too wide) in paragraph at lines 351--351 []\T1/pcr/m/n/7 reinterpret_cast<[][]*[]>[](tabulator1)->AbyssalWassersteinDist ance(*[]reinterpret_cast<[][]*[]>[](tabulator2), Overfull \hbox (27.75554pt too wide) in paragraph at lines 364--364 []\T1/pcr/m/n/7 reinterpret_cast<[][]*[]>[](tabulator1)->WassersteinMatch(*[]re interpret_cast<[][]*[]>[](tabulator2), [125] Overfull \hbox (40.35553pt too wide) in paragraph at lines 374--374 []\T1/pcr/m/n/7 ((*[]reinterpret_cast<[][]*[]>[](tabulator1))+(*[]reinterpret_c ast<[][]*[]>[](tabulator2)))); Overfull \hbox (40.35553pt too wide) in paragraph at lines 380--380 []\T1/pcr/m/n/7 ((*[]reinterpret_cast<[][]*[]>[](tabulator1))*(*[]reinterpret_c ast<[][]*[]>[](tabulator2)))); [126]) (./cwrapper_8h_source.tex [127] [128]) (./dirty_allocator_8cpp_source.tex [129]) (./dirty_allocator_8h_source.tex) (./element__tables_8cpp_source.tex [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] [162] [163] [164]) (./element__tables_8h_source.tex) (./fasta_8cpp_source.tex [165] [166] [167] [168]) (./fasta_8h_source.tex [169]) (./fixed_envelopes_8cpp_source.tex [170] [171] [172] [173] [174] [175] [176] [177] [178] [179] [180] [181] [182] [183]) (./fixed_envelopes_8h_source.tex [184] [185] [186]) (./iso_math_8cpp_source.tex [187] [188]) (./iso_math_8h_source.tex [189]) (./iso_spec_09_09_8cpp_source.tex [190] [191] [192] [193] [194] Overfull \hbox (15.15555pt too wide) in paragraph at lines 441--441 \T1/pcr/m/n/7 ----------------------------------------------------------------- -----------------------------------------[] [195] Overfull \hbox (15.15555pt too wide) in paragraph at lines 477--477 \T1/pcr/m/n/7 ----------------------------------------------------------------- -----------------------------------------[] [196] [197] Overfull \hbox (73.9555pt too wide) in paragraph at lines 654--654 \T1/pcr/m/n/7 ----------------------------------------------------------------- -------------------------------------------------------[] [198] [199] Overfull \hbox (73.9555pt too wide) in paragraph at lines 814--814 \T1/pcr/m/n/7 ----------------------------------------------------------------- -------------------------------------------------------[] [200]) (./iso_spec_09_09_8h_source.tex [201] [202] [203] [204] [205] [206]) (./marginal_trek_09_09_8cpp_source.tex [207] [208] [209] [210] [211] [212] [213] [214]) (./marginal_trek_09_09_8h_source.tex [215] [216] [217] [218]) (./misc_8cpp_source.tex [219]) (./misc_8h_source.tex [220] [221]) (./mman_8cpp_source.tex [222] [223]) (./mman_8h_source.tex [224]) (./operators_8cpp_source.tex [225]) (./operators_8h_source.tex [226] [227]) (./platform_8h_source.tex [228]) (./platform__incl_8h_source.tex) (./pod__vector_8h_source.tex [229] [230] [231] [232] [233]) (./python-build_8cpp_source.tex) (./summator_8h_source.tex [234] [235]) (./unity-build_8cpp_source.tex) [236] (./refman.ind Overfull \hbox (26.35803pt too wide) in paragraph at lines 3--5 []\T1/phv/m/n/10 /<>/IsoSpec++/allocator.cpp, Overfull \hbox (16.85416pt too wide) in paragraph at lines 5--7 []\T1/phv/m/n/10 /<>/IsoSpec++/allocator.h, Underfull \hbox (badness 10000) in paragraph at lines 7--9 []\T1/phv/m/n/10 /<>/IsoSpec++/btrd.h, Overfull \hbox (29.26509pt too wide) in paragraph at lines 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Rerun LaTeX. (./refman.aux) Package rerunfilecheck Warning: File `refman.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ) (see the transcript file for additional information) Output written on refman.pdf (262 pages, 1051052 bytes). Transcript written on refman.log. latex_count=8 ; \ while grep -E -s 'Rerun (LaTeX|to get cross-references right|to get bibliographical references right)' refman.log && [ $latex_count -gt 0 ] ;\ do \ echo "Rerunning latex...." ;\ pdflatex refman ;\ latex_count=`expr $latex_count - 1` ;\ done Package longtable Warning: Table widths have changed. Rerun LaTeX. Rerunning latex.... 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nts/map/pdftex/updmap/pdftex.map}{/usr/share/texlive/texmf-dist/fonts/enc/dvips /base/8r.enc}] [2] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] Chapter 1. (./namespaces.tex) [1] [2] Chapter 2. (./hierarchy.tex) [3] [4] Chapter 3. (./annotated.tex) [5] [6] Chapter 4. (./files.tex) [7] [8] Chapter 5. (./namespace_iso_spec.tex (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1phv.fd) [9] [10] Overfull \hbox (152.89105pt too wide) in paragraph at lines 201--203 []\T1/phv/m/n/10 const dou-ble [] = 1.[]144729885849400174143427351353058711647 294812915311571513623071472137769884826079783623270275489708 [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] Underfull \hbox (badness 10000) in paragraph at lines 871--872 \T1/pcr/m/n/8 ISOSPEC[]_[][]C[]_[][]API const size[]_[]t Iso[]Spec[]::isospec[] _[]number[]_[]of[]_[]isotopic[]_[]entries = ISOSPEC[]_[][]NUMBER[]_[][]OF[]_[][ ] [21] Overfull \hbox (173.55629pt too wide) in paragraph at lines 881--882 \T1/pcr/m/n/8 const double Iso[]Spec[]::logpi = 1.[]144729885849400174143427351 353058711647294812915311571513623071472137769884826079783623270275489708 ) [22] Chapter 6. (./class_iso_spec_1_1_allocator.tex [23]) (./class_iso_spec_1_1_conf_equal.tex [24]) (./class_iso_spec_1_1_conf_order.tex) (./class_iso_spec_1_1_conf_order_marginal.tex [25]) (./class_iso_spec_1_1_conf_order_marginal_descending.tex [26]) (./class_iso_spec_1_1_dirty_allocator.tex [27]) (./class_iso_spec_1_1_fixed_envelope.tex [28] Underfull \hbox (badness 1072) in paragraph at lines 89--91 []\T1/phv/m/n/10 static [] [] ([] &&iso, dou-ble target[]_[]total[]_[]prob, boo l op-ti-mize, bool tget[] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38] [39]) (./class_iso_spec_1_1_iso.tex <./class_iso_spec_1_1_iso.pdf> [40] [41] [42] [43] [44] [45] [46] [47]) (./class_iso_spec_1_1_iso_generator.tex <./class_iso_ spec_1_1_iso_generator.pdf> [48] [49] [50] Underfull \hbox (badness 10000) detected at line 175 [][][] [51] Underfull \hbox (badness 10000) detected at line 206 [][][] Overfull \hbox (30.52501pt too wide) in paragraph at lines 211--212 []\T1/phv/m/n/10 Reimplemented in [], [], and []. 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[52]) (./class_iso_spec_1_1_iso_layered_generator.tex <./class_iso_spec_1_1_iso _layered_generator.pdf> [53] [54] [55] Underfull \hbox (badness 10000) detected at line 177 [][][] [56] Underfull \hbox (badness 10000) in paragraph at lines 192--193 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE bool Iso[]Spec[]::[]Iso[]Layered []Generator[]::advance[]To[]Next[]Configuration[]Within[]Layer Underfull \hbox (badness 10000) in paragraph at lines 230--231 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Layer ed[]Generator[]::lprob ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 236 [][][] Underfull \hbox (badness 10000) in paragraph at lines 251--252 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Layer ed[]Generator[]::mass ( ) const [inline], [final], [57] Underfull \hbox (badness 10000) detected at line 257 [][][] Underfull \hbox (badness 10000) in paragraph at lines 282--283 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Layer ed[]Generator[]::prob ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 288 [][][] ) (./class_iso_spec_1_1_iso_ordered_generator.tex <./class_iso_spec_1_1_iso_ord ered_generator.pdf> [58] [59] [60] [61] Underfull \hbox (badness 10000) detected at line 188 [][][] ) (./class_iso_spec_1_1_iso_stochastic_generator.tex <./class_iso_spec_1_1_iso_ stochastic_generator.pdf> [62] [63] [64] Underfull \hbox (badness 10000) in paragraph at lines 147--148 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE bool Iso[]Spec[]::[]Iso[]Stochas tic[]Generator[]::advance[]To[]Next[]Configuration ( ) Underfull \hbox (badness 10000) detected at line 153 [][][] [65] Underfull \hbox (badness 10000) detected at line 202 [][][] Underfull \hbox (badness 10000) in paragraph at lines 217--218 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Stoch astic[]Generator[]::mass ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 223 [][][] Underfull \hbox (badness 10000) in paragraph at lines 238--239 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Stoch astic[]Generator[]::prob ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 244 [][][] ) (./class_iso_spec_1_1_iso_threshold_generator.tex <./class_iso_spec_1_1_iso_t hreshold_generator.pdf> [66] [67] [68] [69] Overfull \hbox (18.89209pt too wide) in paragraph at lines 195--196 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE bool Iso[]Spec[]::[]Iso[]Thresho ld[]Generator[]::advance[]To[]Next[]Configuration ( ) [inline], Underfull \hbox (badness 10000) detected at line 201 [][][] Underfull \hbox (badness 10000) in paragraph at lines 244--245 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Thres hold[]Generator[]::lprob ( ) const [inline], [final], [70] Underfull \hbox (badness 10000) detected at line 250 [][][] Underfull \hbox (badness 10000) in paragraph at lines 265--266 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Thres hold[]Generator[]::mass ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 271 [][][] Underfull \hbox (badness 10000) in paragraph at lines 286--287 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Thres hold[]Generator[]::prob ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 292 [][][] [71]) (./class_iso_spec_1_1_key_hasher.tex) (./class_iso_spec_1_1_layered_marginal.tex [72] <./class_iso_spec_1_1_layered_m arginal.pdf> [73] [74] Overfull \vbox (7.19118pt too high) has occurred while \output is active [75] Underfull \hbox (badness 10000) detected at line 168 [][][] [76] Underfull \hbox (badness 10000) detected at line 297 [][][] ) (./class_iso_spec_1_1_marginal.tex <./class_iso_spec_1_1_marginal.pdf> [77] [78] Underfull \hbox (badness 10000) detected at line 119 [][][] [79] Underfull \hbox 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(./class_iso_spec_1_1_precalculated_marginal.tex <./class_iso_spec_1_1_precalcu lated_marginal.pdf> [96] [97] [98] Underfull \hbox (badness 10000) detected at line 167 [][][] [99] Underfull \hbox (badness 10000) detected at line 206 [][][] Underfull \hbox (badness 10000) detected at line 228 [][][] Underfull \hbox (badness 10000) detected at line 245 [][][] [100] Underfull \hbox (badness 10000) detected at line 267 [][][] Underfull \hbox (badness 10000) detected at line 284 [][][] Underfull \hbox (badness 10000) detected at line 301 [][][] [101] Underfull \hbox (badness 10000) detected at line 323 [][][] Underfull \hbox (badness 10000) detected at line 340 [][][] Underfull \hbox (badness 10000) detected at line 357 [][][] [102]) (./struct_iso_spec_1_1_prob_and_conf_ptr.tex [103]) (./class_iso_spec_1_1_reverse_order.tex [104]) (./class_iso_spec_1_1_s_summator.tex [105]) (./class_iso_spec_1_1_summator.tex [106]) (./class_iso_spec_1_1_table_order.tex [107]) (./class_iso_spec_1_1_t_summator.tex [108]) (./classunsafe__pod__vector.tex [109] [110] [111] [112] [113] [114]) (./structws__match__res.tex [115]) [116] Chapter 7. (./allocator_8cpp_source.tex) (./allocator_8h_source.tex [117]) (./btrd_8h_source.tex [118] [119] [120]) (./conf_8h_source.tex) (./cwrapper_8cpp_source.tex [121] [122] [123] [124] Overfull \hbox (44.55553pt too wide) in paragraph at lines 329--329 []\T1/pcr/m/n/7 reinterpret_cast<[][]*[]>[](tabulator1)->WassersteinDistance(*[ ]reinterpret_cast<[][]*[]>[](tabulator2)); Overfull \hbox (78.1555pt too wide) in paragraph at lines 341--341 []\T1/pcr/m/n/7 reinterpret_cast<[][]*[]>[](tabulator1)->OrientedWassersteinDis tance(*[]reinterpret_cast<[][]*[]>[](tabulator2)); Overfull \hbox (69.75551pt too wide) in paragraph at lines 351--351 []\T1/pcr/m/n/7 reinterpret_cast<[][]*[]>[](tabulator1)->AbyssalWassersteinDist ance(*[]reinterpret_cast<[][]*[]>[](tabulator2), Overfull \hbox (27.75554pt too wide) in paragraph at lines 364--364 []\T1/pcr/m/n/7 reinterpret_cast<[][]*[]>[](tabulator1)->WassersteinMatch(*[]re interpret_cast<[][]*[]>[](tabulator2), [125] Overfull \hbox (40.35553pt too wide) in 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[187] [188]) (./iso_math_8h_source.tex [189]) (./iso_spec_09_09_8cpp_source.tex [190] [191] [192] [193] [194] Overfull \hbox (15.15555pt too wide) in paragraph at lines 441--441 \T1/pcr/m/n/7 ----------------------------------------------------------------- -----------------------------------------[] [195] Overfull \hbox (15.15555pt too wide) in paragraph at lines 477--477 \T1/pcr/m/n/7 ----------------------------------------------------------------- -----------------------------------------[] [196] [197] Overfull \hbox (73.9555pt too wide) in paragraph at lines 654--654 \T1/pcr/m/n/7 ----------------------------------------------------------------- -------------------------------------------------------[] [198] [199] Overfull \hbox (73.9555pt too wide) in paragraph at lines 814--814 \T1/pcr/m/n/7 ----------------------------------------------------------------- -------------------------------------------------------[] [200]) (./iso_spec_09_09_8h_source.tex [201] [202] [203] [204] [205] [206]) (./marginal_trek_09_09_8cpp_source.tex [207] [208] [209] [210] [211] [212] [213] [214]) (./marginal_trek_09_09_8h_source.tex [215] [216] [217] [218]) (./misc_8cpp_source.tex [219]) (./misc_8h_source.tex [220] [221]) (./mman_8cpp_source.tex [222] [223]) (./mman_8h_source.tex [224]) (./operators_8cpp_source.tex [225]) (./operators_8h_source.tex [226] [227]) (./platform_8h_source.tex [228]) (./platform__incl_8h_source.tex) (./pod__vector_8h_source.tex [229] [230] [231] [232] [233]) (./python-build_8cpp_source.tex) (./summator_8h_source.tex [234] [235]) (./unity-build_8cpp_source.tex) [236] (./refman.ind Overfull \hbox (26.35803pt too wide) in paragraph at lines 3--5 []\T1/phv/m/n/10 /<>/IsoSpec++/allocator.cpp, Overfull \hbox (16.85416pt too wide) in paragraph at lines 5--7 []\T1/phv/m/n/10 /<>/IsoSpec++/allocator.h, Underfull \hbox (badness 10000) in paragraph at lines 7--9 []\T1/phv/m/n/10 /<>/IsoSpec++/btrd.h, Overfull \hbox (29.26509pt too wide) in paragraph at lines 11--13 []\T1/phv/m/n/10 /<>/IsoSpec++/cwrapper.cpp, Overfull \hbox (19.76122pt too wide) in paragraph at lines 13--15 []\T1/phv/m/n/10 /<>/IsoSpec++/cwrapper.h, Overfull \hbox (44.71758pt too wide) in paragraph at lines 15--17 []\T1/phv/m/n/10 /<>/IsoSpec++/dirtyAllocator.c pp, Overfull \hbox (35.2137pt too wide) in paragraph at lines 17--19 []\T1/phv/m/n/10 /<>/IsoSpec++/dirtyAllocator.h , Overfull \hbox (53.51065pt too wide) in paragraph at lines 19--21 []\T1/phv/m/n/10 /<>/IsoSpec++/element_tables.c pp, Overfull \hbox (44.00677pt too wide) in paragraph at lines 21--23 []\T1/phv/m/n/10 /<>/IsoSpec++/element_tables.h , Overfull \hbox (53.01595pt too wide) in paragraph at lines 27--29 []\T1/phv/m/n/10 /<>/IsoSpec++/fixedEnvelopes.c pp, Overfull \hbox (43.51207pt too wide) in paragraph at lines 29--31 []\T1/phv/m/n/10 /<>/IsoSpec++/fixedEnvelopes.h , Overfull \hbox (24.30615pt too wide) in paragraph at lines 31--33 []\T1/phv/m/n/10 /<>/IsoSpec++/isoMath.cpp, Overfull \hbox (35.32205pt too wide) in paragraph at lines 35--37 []\T1/phv/m/n/10 /<>/IsoSpec++/isoSpec++.cpp, Overfull \hbox (25.81818pt too wide) in paragraph at lines 37--39 []\T1/phv/m/n/10 /<>/IsoSpec++/isoSpec++.h, Overfull \hbox (54.73473pt too wide) in paragraph at lines 39--41 []\T1/phv/m/n/10 /<>/IsoSpec++/marginalTrek++.c pp, Overfull \hbox (45.23085pt too wide) in paragraph at lines 41--43 []\T1/phv/m/n/10 /<>/IsoSpec++/marginalTrek++.h , Overfull \hbox (17.79933pt too wide) in paragraph at lines 47--49 []\T1/phv/m/n/10 /<>/IsoSpec++/mman.cpp, Overfull \hbox (30.58806pt too wide) in paragraph at lines 51--53 []\T1/phv/m/n/10 /<>/IsoSpec++/operators.cpp, Overfull \hbox (21.08418pt too wide) in paragraph at lines 53--55 []\T1/phv/m/n/10 /<>/IsoSpec++/operators.h, Overfull \hbox (15.75618pt too wide) in paragraph at lines 55--57 []\T1/phv/m/n/10 /<>/IsoSpec++/platform.h, Overfull \hbox (34.25987pt too wide) in paragraph at lines 57--59 []\T1/phv/m/n/10 /<>/IsoSpec++/platform_incl.h, Overfull \hbox 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Transcript written on refman.log. makeindex refman.idx This is makeindex, version 2.17 [TeX Live 2023] (kpathsea + Thai support). Scanning input file refman.idx....done (815 entries accepted, 0 rejected). Sorting entries.........done (8611 comparisons). Generating output file refman.ind....done (1125 lines written, 0 warnings). Output written in refman.ind. 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[1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}{/usr/share/texlive/texmf-dist/fonts/enc/dvips /base/8r.enc}] [2] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] Chapter 1. (./namespaces.tex) [1] [2] Chapter 2. (./hierarchy.tex) [3] [4] Chapter 3. (./annotated.tex) [5] [6] Chapter 4. (./files.tex) [7] [8] Chapter 5. (./namespace_iso_spec.tex (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1phv.fd) [9] [10] Overfull \hbox (152.89105pt too wide) in paragraph at lines 201--203 []\T1/phv/m/n/10 const dou-ble [] = 1.[]144729885849400174143427351353058711647 294812915311571513623071472137769884826079783623270275489708 [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] Underfull \hbox (badness 10000) in paragraph at lines 871--872 \T1/pcr/m/n/8 ISOSPEC[]_[][]C[]_[][]API const size[]_[]t Iso[]Spec[]::isospec[] _[]number[]_[]of[]_[]isotopic[]_[]entries = ISOSPEC[]_[][]NUMBER[]_[][]OF[]_[][ ] [21] Overfull \hbox (173.55629pt too wide) in paragraph at lines 881--882 \T1/pcr/m/n/8 const double Iso[]Spec[]::logpi = 1.[]144729885849400174143427351 353058711647294812915311571513623071472137769884826079783623270275489708 ) [22] Chapter 6. (./class_iso_spec_1_1_allocator.tex [23]) (./class_iso_spec_1_1_conf_equal.tex [24]) (./class_iso_spec_1_1_conf_order.tex) (./class_iso_spec_1_1_conf_order_marginal.tex [25]) (./class_iso_spec_1_1_conf_order_marginal_descending.tex [26]) (./class_iso_spec_1_1_dirty_allocator.tex [27]) (./class_iso_spec_1_1_fixed_envelope.tex [28] Underfull \hbox (badness 1072) in paragraph at lines 89--91 []\T1/phv/m/n/10 static [] [] ([] &&iso, dou-ble target[]_[]total[]_[]prob, boo l op-ti-mize, bool tget[] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38] [39]) (./class_iso_spec_1_1_iso.tex <./class_iso_spec_1_1_iso.pdf> [40] [41] [42] [43] [44] [45] [46] [47]) (./class_iso_spec_1_1_iso_generator.tex <./class_iso_ spec_1_1_iso_generator.pdf> [48] [49] [50] Underfull \hbox (badness 10000) detected at line 175 [][][] [51] Underfull \hbox (badness 10000) detected at line 206 [][][] Overfull \hbox (30.52501pt too wide) in paragraph at lines 211--212 []\T1/phv/m/n/10 Reimplemented in [], [], and []. Underfull \hbox (badness 10000) detected at line 227 [][][] Overfull \hbox (30.52501pt too wide) in paragraph at lines 232--233 []\T1/phv/m/n/10 Reimplemented in [], [], and []. Underfull \hbox (badness 10000) detected at line 248 [][][] Overfull \hbox (30.52501pt too wide) in paragraph at lines 253--254 []\T1/phv/m/n/10 Reimplemented in [], [], and []. [52]) (./class_iso_spec_1_1_iso_layered_generator.tex <./class_iso_spec_1_1_iso _layered_generator.pdf> [53] [54] [55] Underfull \hbox (badness 10000) detected at line 177 [][][] [56] Underfull \hbox (badness 10000) in paragraph at lines 192--193 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE bool Iso[]Spec[]::[]Iso[]Layered []Generator[]::advance[]To[]Next[]Configuration[]Within[]Layer Underfull \hbox (badness 10000) in paragraph at lines 230--231 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Layer ed[]Generator[]::lprob ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 236 [][][] Underfull \hbox (badness 10000) in paragraph at lines 251--252 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Layer ed[]Generator[]::mass ( ) const [inline], [final], [57] Underfull \hbox (badness 10000) detected at line 257 [][][] Underfull \hbox (badness 10000) in paragraph at lines 282--283 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Layer ed[]Generator[]::prob ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 288 [][][] ) (./class_iso_spec_1_1_iso_ordered_generator.tex <./class_iso_spec_1_1_iso_ord ered_generator.pdf> [58] [59] [60] [61] Underfull \hbox (badness 10000) detected at line 188 [][][] ) (./class_iso_spec_1_1_iso_stochastic_generator.tex <./class_iso_spec_1_1_iso_ stochastic_generator.pdf> [62] [63] [64] Underfull \hbox (badness 10000) in paragraph at lines 147--148 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE bool Iso[]Spec[]::[]Iso[]Stochas tic[]Generator[]::advance[]To[]Next[]Configuration ( ) Underfull \hbox (badness 10000) detected at line 153 [][][] [65] Underfull \hbox (badness 10000) detected at line 202 [][][] Underfull \hbox (badness 10000) in paragraph at lines 217--218 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Stoch astic[]Generator[]::mass ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 223 [][][] Underfull \hbox (badness 10000) in paragraph at lines 238--239 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Stoch astic[]Generator[]::prob ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 244 [][][] ) (./class_iso_spec_1_1_iso_threshold_generator.tex <./class_iso_spec_1_1_iso_t hreshold_generator.pdf> [66] [67] [68] [69] Overfull \hbox (18.89209pt too wide) in paragraph at lines 195--196 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE bool Iso[]Spec[]::[]Iso[]Thresho ld[]Generator[]::advance[]To[]Next[]Configuration ( ) [inline], Underfull \hbox (badness 10000) detected at line 201 [][][] Underfull \hbox (badness 10000) in paragraph at lines 244--245 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Thres hold[]Generator[]::lprob ( ) const [inline], [final], [70] Underfull \hbox (badness 10000) detected at line 250 [][][] Underfull \hbox (badness 10000) in paragraph at lines 265--266 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Thres hold[]Generator[]::mass ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 271 [][][] Underfull \hbox (badness 10000) in paragraph at lines 286--287 \T1/pcr/m/n/8 ISOSPEC[]_[][]FORCE[]_[][]INLINE double Iso[]Spec[]::[]Iso[]Thres hold[]Generator[]::prob ( ) const [inline], [final], Underfull \hbox (badness 10000) detected at line 292 [][][] [71]) (./class_iso_spec_1_1_key_hasher.tex) (./class_iso_spec_1_1_layered_marginal.tex [72] <./class_iso_spec_1_1_layered_m arginal.pdf> [73] [74] Overfull \vbox (7.19118pt too high) has occurred while \output is active [75] Underfull \hbox (badness 10000) detected at line 168 [][][] [76] Underfull \hbox (badness 10000) detected at line 297 [][][] ) (./class_iso_spec_1_1_marginal.tex <./class_iso_spec_1_1_marginal.pdf> [77] [78] Underfull \hbox (badness 10000) detected at line 119 [][][] [79] Underfull \hbox (badness 10000) detected at line 181 [][][] [80] Underfull \hbox (badness 10000) detected at line 222 [][][] Underfull \hbox (badness 10000) detected at line 249 [][][] Underfull \hbox (badness 10000) detected at line 266 [][][] Underfull \hbox (badness 10000) detected at line 283 [][][] [81] Underfull \hbox (badness 10000) detected at line 314 [][][] Underfull \hbox (badness 10000) detected at line 331 [][][] [82] Underfull \hbox (badness 10000) detected at line 362 [][][] Underfull \hbox (badness 10000) detected at line 379 [][][] [83] Underfull \hbox (badness 10000) detected at line 411 [][][] [84]) (./class_iso_spec_1_1_marginal_trek.tex <./class_iso_spec_1_1_marginal_tr ek.pdf> [85] [86] [87] Underfull \hbox (badness 10000) detected at line 191 [][][] [88] Underfull \hbox (badness 10000) detected at line 215 [][][] ) (./class_iso_spec_1_1_order_marginals_by_size_decresing.tex) (./classpod__vector.tex [89] [90] [91] [92] [93] [94] [95]) (./class_iso_spec_1_1_precalculated_marginal.tex <./class_iso_spec_1_1_precalcu lated_marginal.pdf> [96] [97] [98] Underfull \hbox (badness 10000) detected at line 167 [][][] [99] Underfull \hbox (badness 10000) detected at line 206 [][][] Underfull \hbox (badness 10000) detected at line 228 [][][] Underfull \hbox (badness 10000) detected at line 245 [][][] [100] Underfull \hbox (badness 10000) detected at line 267 [][][] Underfull \hbox (badness 10000) detected at line 284 [][][] Underfull \hbox (badness 10000) detected at line 301 [][][] [101] Underfull \hbox (badness 10000) detected at line 323 [][][] Underfull \hbox (badness 10000) detected at line 340 [][][] Underfull \hbox (badness 10000) detected at line 357 [][][] [102]) (./struct_iso_spec_1_1_prob_and_conf_ptr.tex [103]) (./class_iso_spec_1_1_reverse_order.tex [104]) (./class_iso_spec_1_1_s_summator.tex [105]) (./class_iso_spec_1_1_summator.tex [106]) (./class_iso_spec_1_1_table_order.tex [107]) (./class_iso_spec_1_1_t_summator.tex [108]) (./classunsafe__pod__vector.tex [109] [110] [111] [112] [113] [114]) (./structws__match__res.tex [115]) [116] Chapter 7. (./allocator_8cpp_source.tex) (./allocator_8h_source.tex [117]) (./btrd_8h_source.tex [118] [119] [120]) (./conf_8h_source.tex) (./cwrapper_8cpp_source.tex [121] [122] [123] [124] Overfull \hbox (44.55553pt too wide) in paragraph at lines 329--329 []\T1/pcr/m/n/7 reinterpret_cast<[][]*[]>[](tabulator1)->WassersteinDistance(*[ ]reinterpret_cast<[][]*[]>[](tabulator2)); Overfull \hbox (78.1555pt too wide) in paragraph at lines 341--341 []\T1/pcr/m/n/7 reinterpret_cast<[][]*[]>[](tabulator1)->OrientedWassersteinDis tance(*[]reinterpret_cast<[][]*[]>[](tabulator2)); Overfull \hbox (69.75551pt too wide) in paragraph at lines 351--351 []\T1/pcr/m/n/7 reinterpret_cast<[][]*[]>[](tabulator1)->AbyssalWassersteinDist ance(*[]reinterpret_cast<[][]*[]>[](tabulator2), Overfull \hbox (27.75554pt too wide) in paragraph at lines 364--364 []\T1/pcr/m/n/7 reinterpret_cast<[][]*[]>[](tabulator1)->WassersteinMatch(*[]re interpret_cast<[][]*[]>[](tabulator2), [125] Overfull \hbox (40.35553pt too wide) in paragraph at lines 374--374 []\T1/pcr/m/n/7 ((*[]reinterpret_cast<[][]*[]>[](tabulator1))+(*[]reinterpret_c ast<[][]*[]>[](tabulator2)))); Overfull \hbox (40.35553pt too wide) in paragraph at lines 380--380 []\T1/pcr/m/n/7 ((*[]reinterpret_cast<[][]*[]>[](tabulator1))*(*[]reinterpret_c ast<[][]*[]>[](tabulator2)))); [126]) (./cwrapper_8h_source.tex [127] [128]) (./dirty_allocator_8cpp_source.tex [129]) (./dirty_allocator_8h_source.tex) (./element__tables_8cpp_source.tex [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] [162] [163] [164]) (./element__tables_8h_source.tex) (./fasta_8cpp_source.tex [165] [166] [167] [168]) (./fasta_8h_source.tex [169]) (./fixed_envelopes_8cpp_source.tex [170] [171] [172] [173] [174] [175] [176] [177] [178] [179] [180] [181] [182] [183]) (./fixed_envelopes_8h_source.tex [184] [185] [186]) (./iso_math_8cpp_source.tex [187] [188]) (./iso_math_8h_source.tex [189]) (./iso_spec_09_09_8cpp_source.tex [190] [191] [192] [193] [194] Overfull \hbox (15.15555pt too wide) in paragraph at lines 441--441 \T1/pcr/m/n/7 ----------------------------------------------------------------- -----------------------------------------[] [195] Overfull \hbox (15.15555pt too wide) in paragraph at lines 477--477 \T1/pcr/m/n/7 ----------------------------------------------------------------- -----------------------------------------[] [196] [197] Overfull \hbox (73.9555pt too wide) in paragraph at lines 654--654 \T1/pcr/m/n/7 ----------------------------------------------------------------- -------------------------------------------------------[] [198] [199] Overfull \hbox (73.9555pt too wide) in paragraph at lines 814--814 \T1/pcr/m/n/7 ----------------------------------------------------------------- -------------------------------------------------------[] [200]) (./iso_spec_09_09_8h_source.tex [201] [202] [203] [204] [205] [206]) (./marginal_trek_09_09_8cpp_source.tex [207] [208] [209] [210] [211] [212] [213] [214]) (./marginal_trek_09_09_8h_source.tex [215] [216] [217] [218]) (./misc_8cpp_source.tex [219]) (./misc_8h_source.tex [220] [221]) (./mman_8cpp_source.tex [222] [223]) (./mman_8h_source.tex [224]) (./operators_8cpp_source.tex [225]) (./operators_8h_source.tex [226] [227]) (./platform_8h_source.tex [228]) (./platform__incl_8h_source.tex) (./pod__vector_8h_source.tex [229] [230] [231] [232] [233]) (./python-build_8cpp_source.tex) (./summator_8h_source.tex [234] [235]) (./unity-build_8cpp_source.tex) [236] (./refman.ind Overfull \hbox (26.35803pt too wide) in paragraph at lines 3--5 []\T1/phv/m/n/10 /<>/IsoSpec++/allocator.cpp, Overfull \hbox (16.85416pt too wide) in paragraph at lines 5--7 []\T1/phv/m/n/10 /<>/IsoSpec++/allocator.h, Underfull \hbox (badness 10000) in paragraph at lines 7--9 []\T1/phv/m/n/10 /<>/IsoSpec++/btrd.h, Overfull \hbox (29.26509pt too wide) in paragraph at lines 11--13 []\T1/phv/m/n/10 /<>/IsoSpec++/cwrapper.cpp, Overfull \hbox (19.76122pt too wide) in paragraph at lines 13--15 []\T1/phv/m/n/10 /<>/IsoSpec++/cwrapper.h, Overfull \hbox (44.71758pt too wide) in paragraph at lines 15--17 []\T1/phv/m/n/10 /<>/IsoSpec++/dirtyAllocator.c pp, Overfull \hbox (35.2137pt too wide) in paragraph at lines 17--19 []\T1/phv/m/n/10 /<>/IsoSpec++/dirtyAllocator.h , Overfull \hbox (53.51065pt too wide) in paragraph at lines 19--21 []\T1/phv/m/n/10 /<>/IsoSpec++/element_tables.c pp, Overfull \hbox (44.00677pt too wide) in paragraph at lines 21--23 []\T1/phv/m/n/10 /<>/IsoSpec++/element_tables.h , Overfull \hbox (53.01595pt too wide) in paragraph at lines 27--29 []\T1/phv/m/n/10 /<>/IsoSpec++/fixedEnvelopes.c pp, Overfull \hbox (43.51207pt too wide) in paragraph at lines 29--31 []\T1/phv/m/n/10 /<>/IsoSpec++/fixedEnvelopes.h , Overfull \hbox (24.30615pt too wide) in paragraph at lines 31--33 []\T1/phv/m/n/10 /<>/IsoSpec++/isoMath.cpp, Overfull \hbox (35.32205pt too wide) in paragraph at lines 35--37 []\T1/phv/m/n/10 /<>/IsoSpec++/isoSpec++.cpp, Overfull \hbox (25.81818pt too wide) in paragraph at lines 37--39 []\T1/phv/m/n/10 /<>/IsoSpec++/isoSpec++.h, Overfull \hbox (54.73473pt too wide) in paragraph at lines 39--41 []\T1/phv/m/n/10 /<>/IsoSpec++/marginalTrek++.c pp, Overfull \hbox (45.23085pt too wide) in paragraph at lines 41--43 []\T1/phv/m/n/10 /<>/IsoSpec++/marginalTrek++.h , Overfull \hbox (17.79933pt too wide) in paragraph at lines 47--49 []\T1/phv/m/n/10 /<>/IsoSpec++/mman.cpp, Overfull \hbox (30.58806pt too wide) in paragraph at lines 51--53 []\T1/phv/m/n/10 /<>/IsoSpec++/operators.cpp, Overfull \hbox (21.08418pt too wide) in paragraph at lines 53--55 []\T1/phv/m/n/10 /<>/IsoSpec++/operators.h, Overfull \hbox (15.75618pt too wide) in paragraph at lines 55--57 []\T1/phv/m/n/10 /<>/IsoSpec++/platform.h, Overfull \hbox (34.25987pt too wide) in paragraph at lines 57--59 []\T1/phv/m/n/10 /<>/IsoSpec++/platform_incl.h, Overfull \hbox (27.14102pt too wide) in paragraph at lines 59--61 []\T1/phv/m/n/10 /<>/IsoSpec++/pod_vector.h, Overfull \hbox (22.84814pt too wide) in paragraph at lines 63--65 []\T1/phv/m/n/10 /<>/IsoSpec++/summator.h, Underfull \hbox (badness 10000) in paragraph at lines 65--67 []\T1/phv/m/n/10 /<>/IsoSpec++/unity- [237] [238] [239] [240] [241] [242] Underfull \hbox (badness 870) in paragraph at lines 842--844 []| \T1/phv/m/n/10 IsoSpec::OrderMarginalsBySizeDecresing$\OML/cmm/m/it/10 <$ \ T1/phv/m/n/10 T $\OML/cmm/m/it/10 >$\T1/phv/m/n/10 , [243] Underfull \hbox (badness 870) in paragraph at lines 856--858 []| \T1/phv/m/n/10 IsoSpec::OrderMarginalsBySizeDecresing$\OML/cmm/m/it/10 <$ \ T1/phv/m/n/10 T $\OML/cmm/m/it/10 >$\T1/phv/m/n/10 , [244] [245] [246]) (./refman.aux) ) (see the transcript file for additional information) Output written on refman.pdf (262 pages, 1050758 bytes). Transcript written on refman.log. make[6]: Leaving directory '/<>/man/latex' make[5]: Leaving directory '/<>/obj-s390x-linux-gnu' [100%] Built target pdf_doc make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/obj-s390x-linux-gnu/CMakeFiles 0 make[3]: Leaving directory '/<>/obj-s390x-linux-gnu' make[2]: Leaving directory '/<>/obj-s390x-linux-gnu' # sed-based replacement of the cloudflare URL with the MathJax.js file from the # libjs-mathjax package sh debian/replace-mathjax-cloudflare-url-local-file.sh # Recreate the symlink that was created by setup.py # and that we had to remove at the override_dh_clean target. ln -sf IsoSpec++ IsoSpecPy/IsoSpec++ # Install the Python module dh_auto_install -O--buildsystem=pybuild -O--system=distutils --sourcedirectory=. install -m0755 -d /<>/debian/tmp pybuild --install -i python{version} -p 3.12 --dest-dir /<>/debian/tmp I: pybuild base:311: /usr/bin/python3 setup.py install --root /<>/debian/python3-isospec running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py creating /<>/.pybuild/cpython3_3.12_isospec/build/IsoSpecPy copying IsoSpecPy/Advanced.py -> /<>/.pybuild/cpython3_3.12_isospec/build/IsoSpecPy copying IsoSpecPy/Distributions.py -> /<>/.pybuild/cpython3_3.12_isospec/build/IsoSpecPy copying IsoSpecPy/Formulas.py -> /<>/.pybuild/cpython3_3.12_isospec/build/IsoSpecPy copying IsoSpecPy/isoFFI.py -> /<>/.pybuild/cpython3_3.12_isospec/build/IsoSpecPy copying IsoSpecPy/IsoSpecPy.py -> /<>/.pybuild/cpython3_3.12_isospec/build/IsoSpecPy copying IsoSpecPy/confs_passthrough.py -> /<>/.pybuild/cpython3_3.12_isospec/build/IsoSpecPy copying IsoSpecPy/PeriodicTbl.py -> /<>/.pybuild/cpython3_3.12_isospec/build/IsoSpecPy copying IsoSpecPy/__init__.py -> /<>/.pybuild/cpython3_3.12_isospec/build/IsoSpecPy copying IsoSpecPy/approximations.py -> /<>/.pybuild/cpython3_3.12_isospec/build/IsoSpecPy copying IsoSpecPy/IsoSpecPyOld.py -> /<>/.pybuild/cpython3_3.12_isospec/build/IsoSpecPy running build_ext building 'IsoSpecCppPy' extension creating build creating build/temp.linux-s390x-cpython-312 creating build/temp.linux-s390x-cpython-312/IsoSpec++ s390x-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/isospec-2.2.1-4.1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -I/usr/include/python3.12 -c IsoSpec++/python-build.cpp -o build/temp.linux-s390x-cpython-312/IsoSpec++/python-build.o -O3 -std=c++17 s390x-linux-gnu-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -g -O2 -fno-omit-frame-pointer -mbackchain -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/isospec-2.2.1-4.1build1 -Wdate-time -D_FORTIFY_SOURCE=3 build/temp.linux-s390x-cpython-312/IsoSpec++/python-build.o -L/usr/lib/s390x-linux-gnu -o /<>/.pybuild/cpython3_3.12_isospec/build/IsoSpecCppPy.cpython-312-s390x-linux-gnu.so running install_lib creating /<>/debian/python3-isospec creating /<>/debian/python3-isospec/usr creating /<>/debian/python3-isospec/usr/lib creating /<>/debian/python3-isospec/usr/lib/python3.12 creating /<>/debian/python3-isospec/usr/lib/python3.12/dist-packages creating /<>/debian/python3-isospec/usr/lib/python3.12/dist-packages/IsoSpecPy copying /<>/.pybuild/cpython3_3.12_isospec/build/IsoSpecPy/Advanced.py -> /<>/debian/python3-isospec/usr/lib/python3.12/dist-packages/IsoSpecPy copying /<>/.pybuild/cpython3_3.12_isospec/build/IsoSpecPy/Distributions.py -> /<>/debian/python3-isospec/usr/lib/python3.12/dist-packages/IsoSpecPy copying /<>/.pybuild/cpython3_3.12_isospec/build/IsoSpecPy/Formulas.py -> /<>/debian/python3-isospec/usr/lib/python3.12/dist-packages/IsoSpecPy copying /<>/.pybuild/cpython3_3.12_isospec/build/IsoSpecPy/isoFFI.py -> /<>/debian/python3-isospec/usr/lib/python3.12/dist-packages/IsoSpecPy copying /<>/.pybuild/cpython3_3.12_isospec/build/IsoSpecPy/IsoSpecPy.py -> /<>/debian/python3-isospec/usr/lib/python3.12/dist-packages/IsoSpecPy copying /<>/.pybuild/cpython3_3.12_isospec/build/IsoSpecPy/confs_passthrough.py -> /<>/debian/python3-isospec/usr/lib/python3.12/dist-packages/IsoSpecPy copying /<>/.pybuild/cpython3_3.12_isospec/build/IsoSpecPy/PeriodicTbl.py -> /<>/debian/python3-isospec/usr/lib/python3.12/dist-packages/IsoSpecPy copying /<>/.pybuild/cpython3_3.12_isospec/build/IsoSpecPy/__init__.py -> /<>/debian/python3-isospec/usr/lib/python3.12/dist-packages/IsoSpecPy copying /<>/.pybuild/cpython3_3.12_isospec/build/IsoSpecPy/approximations.py -> /<>/debian/python3-isospec/usr/lib/python3.12/dist-packages/IsoSpecPy copying /<>/.pybuild/cpython3_3.12_isospec/build/IsoSpecPy/IsoSpecPyOld.py -> /<>/debian/python3-isospec/usr/lib/python3.12/dist-packages/IsoSpecPy copying /<>/.pybuild/cpython3_3.12_isospec/build/IsoSpecCppPy.cpython-312-s390x-linux-gnu.so -> /<>/debian/python3-isospec/usr/lib/python3.12/dist-packages byte-compiling /<>/debian/python3-isospec/usr/lib/python3.12/dist-packages/IsoSpecPy/Advanced.py to Advanced.cpython-312.pyc byte-compiling /<>/debian/python3-isospec/usr/lib/python3.12/dist-packages/IsoSpecPy/Distributions.py to Distributions.cpython-312.pyc byte-compiling /<>/debian/python3-isospec/usr/lib/python3.12/dist-packages/IsoSpecPy/Formulas.py to Formulas.cpython-312.pyc byte-compiling /<>/debian/python3-isospec/usr/lib/python3.12/dist-packages/IsoSpecPy/isoFFI.py to isoFFI.cpython-312.pyc byte-compiling /<>/debian/python3-isospec/usr/lib/python3.12/dist-packages/IsoSpecPy/IsoSpecPy.py to IsoSpecPy.cpython-312.pyc byte-compiling /<>/debian/python3-isospec/usr/lib/python3.12/dist-packages/IsoSpecPy/confs_passthrough.py to confs_passthrough.cpython-312.pyc byte-compiling /<>/debian/python3-isospec/usr/lib/python3.12/dist-packages/IsoSpecPy/PeriodicTbl.py to PeriodicTbl.cpython-312.pyc byte-compiling /<>/debian/python3-isospec/usr/lib/python3.12/dist-packages/IsoSpecPy/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/python3-isospec/usr/lib/python3.12/dist-packages/IsoSpecPy/approximations.py to approximations.cpython-312.pyc /usr/lib/python3.12/dist-packages/IsoSpecPy/approximations.py:38: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/IsoSpecPy/approximations.py:53: SyntaxWarning: invalid escape sequence '\s' byte-compiling /<>/debian/python3-isospec/usr/lib/python3.12/dist-packages/IsoSpecPy/IsoSpecPyOld.py to IsoSpecPyOld.cpython-312.pyc /usr/lib/python3.12/dist-packages/IsoSpecPy/IsoSpecPyOld.py:98: SyntaxWarning: invalid escape sequence '\D' /usr/lib/python3.12/dist-packages/IsoSpecPy/IsoSpecPyOld.py:99: SyntaxWarning: invalid escape sequence '\d' running install_egg_info running egg_info creating IsoSpecPy.egg-info writing IsoSpecPy.egg-info/PKG-INFO writing dependency_links to IsoSpecPy.egg-info/dependency_links.txt writing requirements to IsoSpecPy.egg-info/requires.txt writing top-level names to IsoSpecPy.egg-info/top_level.txt writing manifest file 'IsoSpecPy.egg-info/SOURCES.txt' reading manifest file 'IsoSpecPy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'IsoSpecPy/*.dll' adding license file 'LICENCE' writing manifest file 'IsoSpecPy.egg-info/SOURCES.txt' Copying IsoSpecPy.egg-info to /<>/debian/python3-isospec/usr/lib/python3.12/dist-packages/IsoSpecPy-2.2.1.egg-info Skipping SOURCES.txt running install_scripts # Install the C++ library dh_auto_install -O--buildsystem=cmake install -m0755 -d /<>/debian/tmp cd obj-s390x-linux-gnu && make -j4 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/<>/obj-s390x-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-s390x-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/<>/obj-s390x-linux-gnu' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/<>/obj-s390x-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/debian/tmp/usr/lib/s390x-linux-gnu/cmake/isospec++/FindIsoSpec++.cmake -- Installing: /<>/debian/tmp/usr/lib/s390x-linux-gnu/cmake/isospec++/IsoSpec++Config.cmake -- Installing: /<>/debian/tmp/usr/lib/s390x-linux-gnu/pkgconfig/libisospec++.pc -- Installing: /<>/debian/tmp/usr/share/doc/isospec/images -- Installing: /<>/debian/tmp/usr/share/doc/isospec/images/isospec_logo2_long_versioned.png -- Installing: /<>/debian/tmp/usr/share/doc/isospec/images/logo2_long.pdf -- Installing: /<>/debian/tmp/usr/share/doc/isospec/images/logo2_high.pdf -- Installing: /<>/debian/tmp/usr/share/doc/isospec/images/isospec_logo2_high_versioned.png -- Installing: /<>/debian/tmp/usr/share/doc/isospec/images/isospec_logo2_high_versioned.svg -- Installing: /<>/debian/tmp/usr/share/doc/isospec/images/isospec_logo2_long_versioned.svg -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_threshold_generator-members.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_conf_equal.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_marginal.png -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_dirty_allocator-members.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_threshold_generator.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/functions.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/operators_8h_source.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/marginal_trek_09_09_8h_source.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/struct_iso_spec_1_1_prob_and_conf_ptr-members.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/misc_8cpp_source.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/dirty_allocator_8cpp_source.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/tab_bd.png -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/element__tables_8cpp_source.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/namespacemembers.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/allocator_8cpp_source.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_marginal_trek-members.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/structws__match__res-members.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_conf_equal-members.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_order_marginals_by_size_decresing.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/platform__incl_8h_source.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/unity-build_8cpp_source.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_conf_order_marginal-members.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/mman_8cpp_source.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/dirty_allocator_8h_source.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/tab_hd.png -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/allocator_8h_source.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/classpod__vector.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/closed.png -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_layered_generator-members.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/mman_8h_source.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/nav_h.png -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/sync_off.png -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_allocator.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_reverse_order-members.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/nav_fd.png -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/cwrapper_8cpp_source.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/jquery.js -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/namespaces.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso.png -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_stochastic_generator-members.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/minus.svg -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/bc_s.png -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/index.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/element__tables_8h_source.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/namespacemembers_func.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/sync_on.png -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/splitbard.png -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso-members.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_s_summator.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/python-build_8cpp_source.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_threshold_generator.png -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/classes.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/functions_func.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_fixed_envelope.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_stochastic_generator.png -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/nav_g.png -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/bc_sd.png -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_ordered_generator-members.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_s_summator-members.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/fasta_8cpp_source.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_allocator-members.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/iso_spec_09_09_8cpp_source.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/plus.svg -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_t_summator-members.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_table_order-members.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_fixed_envelope-members.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_marginal_trek.png -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_table_order.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_stochastic_generator.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_precalculated_marginal.png -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_conf_order_marginal_descending-members.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/functions_vars.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/dynsections.js -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/minusd.svg -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/tab_b.png -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/misc_8h_source.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/iso_math_8h_source.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/fasta_8h_source.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/classpod__vector-members.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_layered_marginal.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_key_hasher.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/isospec_logo2_high_versioned.png -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_layered_generator.png -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/fixed_envelopes_8h_source.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_marginal_trek.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_t_summator.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_ordered_generator.png -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/struct_iso_spec_1_1_prob_and_conf_ptr.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/open.png -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_ordered_generator.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/menudata.js -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_precalculated_marginal.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/files.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/nav_f.png -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_summator-members.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/namespace_iso_spec.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/platform_8h_source.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/tab_s.png -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/pod__vector_8h_source.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/tabs.css -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/classunsafe__pod__vector-members.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_conf_order.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_reverse_order.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_generator.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/folderopend.svg -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/cwrapper_8h_source.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_conf_order_marginal.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/iso_spec_09_09_8h_source.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_conf_order-members.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/tab_sd.png -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/doxygen.svg -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/plusd.svg -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/splitbar.png -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_marginal-members.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/btrd_8h_source.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_generator-members.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/folderclosedd.svg -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/doc.svg -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/tab_ad.png -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_order_marginals_by_size_decresing-members.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/doxygen.css -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_precalculated_marginal-members.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_layered_generator.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/tab_h.png -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso_generator.png -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/nav_hd.png -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_dirty_allocator.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/docd.svg -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_iso.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/summator_8h_source.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/tab_a.png -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/fixed_envelopes_8cpp_source.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_conf_order_marginal_descending.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_marginal.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/classunsafe__pod__vector.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_summator.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/conf_8h_source.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/marginal_trek_09_09_8cpp_source.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/folderclosed.svg -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/hierarchy.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search/mag_d.svg -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search/functions_10.js -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search/functions_f.js -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search/variables_2.js -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search/classes_7.js -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search/classes_e.js -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search/functions_c.js -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search/classes_8.js -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search/classes_a.js -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search/all_6.js -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search/functions_d.js -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search/classes_b.js -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search/classes_0.js -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search/search.js -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search/functions_a.js -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search/classes_d.js -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search/all_12.js -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search/all_d.js -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search/close.svg -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search/all_e.js -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search/all_3.js -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search/functions_2.js -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search/classes_9.js -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search/mag_seld.svg -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search/functions_b.js -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search/variables_0.js -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search/functions_4.js -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search/functions_9.js -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search/all_a.js -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search/variables_4.js -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search/search.css -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search/all_9.js -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search/functions_6.js -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search/all_8.js -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search/classes_c.js -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search/namespaces_0.js -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search/variables_1.js -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search/functions_e.js -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search/classes_3.js -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search/all_5.js -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search/variables_6.js -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search/all_0.js -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search/classes_2.js -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search/functions_1.js -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search/functions_5.js -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search/mag.svg -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search/all_10.js -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search/classes_5.js -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search/variables_3.js -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search/all_4.js -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search/classes_6.js -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search/all_7.js -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search/all_b.js -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search/functions_8.js -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search/all_2.js -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search/variables_5.js -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search/classes_4.js -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search/functions_0.js -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search/functions_7.js -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search/all_c.js -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search/all_1.js -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search/mag_sel.svg -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search/all_f.js -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search/functions_3.js -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search/all_13.js -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search/searchdata.js -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search/classes_1.js -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/search/all_11.js -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_key_hasher-members.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_layered_marginal-members.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/structws__match__res.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/class_iso_spec_1_1_layered_marginal.png -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/operators_8cpp_source.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/menu.js -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/annotated.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/dir_a3505bc52982c4b58e8e73ba88673843.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/folderopen.svg -- Installing: /<>/debian/tmp/usr/share/doc/isospec/html/iso_math_8cpp_source.html -- Installing: /<>/debian/tmp/usr/share/doc/isospec/pdf/refman.pdf -- Installing: /<>/debian/tmp/usr/share/man/man3/IsoSpec.3 -- Installing: /<>/debian/tmp/usr/share/man/man3/IsoSpec_Allocator.3 -- Installing: /<>/debian/tmp/usr/share/man/man3/IsoSpec_ConfEqual.3 -- Installing: /<>/debian/tmp/usr/share/man/man3/IsoSpec_ConfOrder.3 -- Installing: /<>/debian/tmp/usr/share/man/man3/IsoSpec_ConfOrderMarginal.3 -- Installing: /<>/debian/tmp/usr/share/man/man3/IsoSpec_ConfOrderMarginalDescending.3 -- Installing: /<>/debian/tmp/usr/share/man/man3/IsoSpec_DirtyAllocator.3 -- Installing: /<>/debian/tmp/usr/share/man/man3/IsoSpec_FixedEnvelope.3 -- Installing: /<>/debian/tmp/usr/share/man/man3/IsoSpec_Iso.3 -- Installing: /<>/debian/tmp/usr/share/man/man3/IsoSpec_IsoGenerator.3 -- Installing: /<>/debian/tmp/usr/share/man/man3/IsoSpec_IsoLayeredGenerator.3 -- Installing: /<>/debian/tmp/usr/share/man/man3/IsoSpec_IsoOrderedGenerator.3 -- Installing: /<>/debian/tmp/usr/share/man/man3/IsoSpec_IsoStochasticGenerator.3 -- Installing: /<>/debian/tmp/usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3 -- Installing: /<>/debian/tmp/usr/share/man/man3/IsoSpec_KeyHasher.3 -- Installing: /<>/debian/tmp/usr/share/man/man3/IsoSpec_LayeredMarginal.3 -- Installing: /<>/debian/tmp/usr/share/man/man3/IsoSpec_Marginal.3 -- Installing: /<>/debian/tmp/usr/share/man/man3/IsoSpec_MarginalTrek.3 -- Installing: /<>/debian/tmp/usr/share/man/man3/IsoSpec_OrderMarginalsBySizeDecresing.3 -- Installing: /<>/debian/tmp/usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3 -- Installing: /<>/debian/tmp/usr/share/man/man3/IsoSpec_ProbAndConfPtr.3 -- Installing: /<>/debian/tmp/usr/share/man/man3/IsoSpec_ReverseOrder.3 -- Installing: /<>/debian/tmp/usr/share/man/man3/IsoSpec_SSummator.3 -- Installing: /<>/debian/tmp/usr/share/man/man3/IsoSpec_Summator.3 -- Installing: /<>/debian/tmp/usr/share/man/man3/IsoSpec_TSummator.3 -- Installing: /<>/debian/tmp/usr/share/man/man3/IsoSpec_TableOrder.3 -- Installing: /<>/debian/tmp/usr/share/man/man3/pod_vector.3 -- Installing: /<>/debian/tmp/usr/share/man/man3/unsafe_pod_vector.3 -- Installing: /<>/debian/tmp/usr/share/man/man3/ws_match_res.3 -- Installing: /<>/debian/tmp/usr/share/doc/isospec/examples/C++ -- Installing: /<>/debian/tmp/usr/share/doc/isospec/examples/C++/water.cpp -- Installing: /<>/debian/tmp/usr/share/doc/isospec/examples/C++/radiolabelling.cpp -- Installing: /<>/debian/tmp/usr/share/doc/isospec/examples/C++/COMPILING -- Installing: /<>/debian/tmp/usr/share/doc/isospec/examples/Python -- Installing: /<>/debian/tmp/usr/share/doc/isospec/examples/Python/water.py -- Installing: /<>/debian/tmp/usr/share/doc/isospec/examples/Python/radiolabelling.py -- Installing: /<>/debian/tmp/usr/share/doc/isospec/examples/Python/custom_elements.py -- Installing: /<>/debian/tmp/usr/share/doc/isospec/examples/Python/fasta.py -- Installing: /<>/debian/tmp/usr/share/doc/isospec/examples/R -- Installing: /<>/debian/tmp/usr/share/doc/isospec/examples/R/water.R -- Installing: /<>/debian/tmp/usr/share/doc/isospec/examples/R/radiolabelling.R -- Installing: /<>/debian/tmp/usr/lib/s390x-linux-gnu/libIsoSpec++.so.2.2.1 -- Installing: /<>/debian/tmp/usr/lib/s390x-linux-gnu/libIsoSpec++.so.2 -- Installing: /<>/debian/tmp/usr/lib/s390x-linux-gnu/libIsoSpec++.a make[2]: Leaving directory '/<>/obj-s390x-linux-gnu' # Now remove the links, that we'll provide using d/*.links # So that we can use libIsoSpec++.so.* in d/*.install rm -f debian/tmp/usr/lib/*/libIsoSpec++.so rm -f debian/tmp/usr/lib/*/libIsoSpec++.so.2 make[1]: Leaving directory '/<>' dh_install -a install -m0755 -d debian/libisospec\+\+-dev//usr/lib/s390x-linux-gnu cp --reflink=auto -a debian/tmp/usr/lib/s390x-linux-gnu/libIsoSpec\+\+.a debian/libisospec\+\+-dev//usr/lib/s390x-linux-gnu/ install -m0755 -d debian/libisospec\+\+-dev//usr/lib/s390x-linux-gnu/cmake cp --reflink=auto -a debian/tmp/usr/lib/s390x-linux-gnu/cmake/isospec\+\+ debian/libisospec\+\+-dev//usr/lib/s390x-linux-gnu/cmake/ install -m0755 -d debian/libisospec\+\+-dev//usr/lib/s390x-linux-gnu/pkgconfig cp --reflink=auto -a debian/tmp/usr/lib/s390x-linux-gnu/pkgconfig/libisospec\+\+.pc debian/libisospec\+\+-dev//usr/lib/s390x-linux-gnu/pkgconfig/ install -m0755 -d debian/libisospec\+\+-dev/usr/include/IsoSpec\+\+ cp --reflink=auto -a ./IsoSpec\+\+/allocator.h ./IsoSpec\+\+/btrd.h ./IsoSpec\+\+/conf.h ./IsoSpec\+\+/cwrapper.h ./IsoSpec\+\+/dirtyAllocator.h ./IsoSpec\+\+/element_tables.h ./IsoSpec\+\+/fasta.h ./IsoSpec\+\+/fixedEnvelopes.h ./IsoSpec\+\+/isoMath.h ./IsoSpec\+\+/isoSpec\+\+.h ./IsoSpec\+\+/marginalTrek\+\+.h ./IsoSpec\+\+/misc.h ./IsoSpec\+\+/mman.h ./IsoSpec\+\+/operators.h ./IsoSpec\+\+/platform.h ./IsoSpec\+\+/platform_incl.h ./IsoSpec\+\+/pod_vector.h ./IsoSpec\+\+/summator.h debian/libisospec\+\+-dev/usr/include/IsoSpec\+\+/ install -m0755 -d debian/libisospec\+\+2t64//usr/lib/s390x-linux-gnu cp --reflink=auto -a debian/tmp/usr/lib/s390x-linux-gnu/libIsoSpec\+\+.so.2.2.1 debian/libisospec\+\+2t64//usr/lib/s390x-linux-gnu/ dh_installdocs -a install -m0755 -d debian/libisospec\+\+-dev/usr/share/doc/libisospec\+\+-dev install -p -m0644 debian/copyright debian/libisospec\+\+-dev/usr/share/doc/libisospec\+\+-dev/copyright install -m0755 -d debian/libisospec\+\+2t64/usr/share/doc/libisospec\+\+2t64 install -p -m0644 debian/copyright debian/libisospec\+\+2t64/usr/share/doc/libisospec\+\+2t64/copyright install -m0755 -d debian/python3-isospec/usr/share/doc/python3-isospec install -p -m0644 debian/copyright debian/python3-isospec/usr/share/doc/python3-isospec/copyright dh_installchangelogs -a install -m0755 -d debian/python3-isospec/usr/share/doc/python3-isospec install -p -m0644 debian/.debhelper/generated/python3-isospec/dh_installchangelogs.dch.trimmed debian/python3-isospec/usr/share/doc/python3-isospec/changelog.Debian install -m0755 -d debian/libisospec\+\+-dev/usr/share/doc/libisospec\+\+-dev install -p -m0644 debian/.debhelper/generated/libisospec\+\+-dev/dh_installchangelogs.dch.trimmed debian/libisospec\+\+-dev/usr/share/doc/libisospec\+\+-dev/changelog.Debian install -m0755 -d debian/libisospec\+\+2t64/usr/share/doc/libisospec\+\+2t64 install -p -m0644 debian/.debhelper/generated/libisospec\+\+2t64/dh_installchangelogs.dch.trimmed debian/libisospec\+\+2t64/usr/share/doc/libisospec\+\+2t64/changelog.Debian dh_installman -a install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_Allocator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Allocator.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_ConfEqual.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfEqual.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_ConfOrder.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrder.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_ConfOrderMarginal.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginal.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_ConfOrderMarginalDescending.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginalDescending.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_DirtyAllocator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_DirtyAllocator.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_FixedEnvelope.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_FixedEnvelope.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_Iso.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Iso.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_IsoGenerator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoGenerator.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_IsoLayeredGenerator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoLayeredGenerator.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_IsoOrderedGenerator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoOrderedGenerator.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_IsoStochasticGenerator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoStochasticGenerator.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_KeyHasher.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_KeyHasher.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_LayeredMarginal.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_LayeredMarginal.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_Marginal.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Marginal.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_MarginalTrek.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_MarginalTrek.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_OrderMarginalsBySizeDecresing.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_OrderMarginalsBySizeDecresing.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_ProbAndConfPtr.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ProbAndConfPtr.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_ReverseOrder.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ReverseOrder.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_SSummator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_SSummator.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_Summator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Summator.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_TableOrder.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TableOrder.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/IsoSpec_TSummator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TSummator.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/pod_vector.3 debian/libisospec\+\+-dev/usr/share/man/man3/pod_vector.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/unsafe_pod_vector.3 debian/libisospec\+\+-dev/usr/share/man/man3/unsafe_pod_vector.3 install -m0755 -d debian/libisospec\+\+-dev/usr/share/man/man3/ install -p -m0644 debian/tmp/usr/share/man/man3/ws_match_res.3 debian/libisospec\+\+-dev/usr/share/man/man3/ws_match_res.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Allocator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfEqual.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrder.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginal.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginalDescending.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_DirtyAllocator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_FixedEnvelope.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TSummator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TableOrder.3 debian/libisospec\+\+-dev/usr/share/man/man3/pod_vector.3 debian/libisospec\+\+-dev/usr/share/man/man3/unsafe_pod_vector.3 debian/libisospec\+\+-dev/usr/share/man/man3/ws_match_res.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Marginal.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_MarginalTrek.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_OrderMarginalsBySizeDecresing.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ProbAndConfPtr.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ReverseOrder.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_SSummator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Summator.3 man-recode --to-code UTF-8 --suffix .dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Iso.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoGenerator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoLayeredGenerator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoOrderedGenerator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoStochasticGenerator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_KeyHasher.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_LayeredMarginal.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TSummator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TSummator.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TableOrder.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TableOrder.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/pod_vector.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/pod_vector.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/unsafe_pod_vector.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/unsafe_pod_vector.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/ws_match_res.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/ws_match_res.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TSummator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_TableOrder.3 debian/libisospec\+\+-dev/usr/share/man/man3/pod_vector.3 debian/libisospec\+\+-dev/usr/share/man/man3/unsafe_pod_vector.3 debian/libisospec\+\+-dev/usr/share/man/man3/ws_match_res.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Allocator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Allocator.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfEqual.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfEqual.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrder.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrder.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginal.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginal.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginalDescending.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginalDescending.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_DirtyAllocator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_DirtyAllocator.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_FixedEnvelope.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_FixedEnvelope.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Allocator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfEqual.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrder.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginal.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ConfOrderMarginalDescending.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_DirtyAllocator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_FixedEnvelope.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Marginal.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Marginal.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_MarginalTrek.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_MarginalTrek.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_OrderMarginalsBySizeDecresing.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_OrderMarginalsBySizeDecresing.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ProbAndConfPtr.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ProbAndConfPtr.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ReverseOrder.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ReverseOrder.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_SSummator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_SSummator.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Summator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Summator.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Marginal.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_MarginalTrek.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_OrderMarginalsBySizeDecresing.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ProbAndConfPtr.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_ReverseOrder.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_SSummator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Summator.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Iso.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Iso.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoGenerator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoGenerator.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoLayeredGenerator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoLayeredGenerator.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoOrderedGenerator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoOrderedGenerator.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoStochasticGenerator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoStochasticGenerator.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_KeyHasher.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_KeyHasher.3 mv debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_LayeredMarginal.3.dh-new debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_LayeredMarginal.3 chmod 0644 -- debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_Iso.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoGenerator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoLayeredGenerator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoOrderedGenerator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoStochasticGenerator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_KeyHasher.3 debian/libisospec\+\+-dev/usr/share/man/man3/IsoSpec_LayeredMarginal.3 dh_python3 -a D: dh_python3 dh_python3:179: version: 6.20240401 D: dh_python3 dh_python3:180: argv: ['/usr/bin/dh_python3', '-a'] D: dh_python3 dh_python3:181: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=True, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=None) D: dh_python3 dh_python3:182: supported Python versions: 3.12 (default=3.12) D: dh_python3 debhelper:166: skipping package libisospec++-dev (missing ${python3:Depends} in Depends/Recommends) D: dh_python3 debhelper:166: skipping package libisospec++2t64 (missing ${python3:Depends} in Depends/Recommends) D: dh_python3 debhelper:174: source=isospec, binary packages=['python3-isospec'] D: dh_python3 dh_python3:204: processing package python3-isospec... D: dh_python3 fs:50: moving files from debian/python3-isospec/usr/lib/python3.12/dist-packages to debian/python3-isospec/usr/lib/python3/dist-packages/ D: dh_python3 fs:335: package python3-isospec details = {'requires.txt': {'debian/python3-isospec/usr/lib/python3/dist-packages/IsoSpecPy-2.2.1.egg-info/requires.txt'}, 'egg-info': {'debian/python3-isospec/usr/lib/python3/dist-packages/IsoSpecPy-2.2.1.egg-info/PKG-INFO'}, 'dist-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.12')}, 'ext_no_version': set()} D: dh_python3 depends:103: generating dependencies for package python3-isospec D: dh_python3 pydist:173: trying to find dependency for cffi (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:218: dependency: requirement already has hardcoded version D: dh_python3 depends:253: D={'python3 (<< 3.13)', 'python3-cffi-backend-api-min (<= 9729), python3-cffi-backend-api-max (>= 9729)', 'python3 (>= 3.12~)', 'python3:any'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_lintian -a install -m0755 -d debian/libisospec\+\+2t64/usr/share/lintian/overrides install -p -m0644 debian/libisospec\+\+2t64.lintian-overrides debian/libisospec\+\+2t64/usr/share/lintian/overrides/libisospec\+\+2t64 dh_perl -a dh_link -a install -m0755 -d debian/libisospec\+\+-dev/usr/lib/s390x-linux-gnu rm -f debian/libisospec\+\+-dev/usr/lib/s390x-linux-gnu/libIsoSpec\+\+.so ln -s libIsoSpec\+\+.so.2.2.1 debian/libisospec\+\+-dev/usr/lib/s390x-linux-gnu/libIsoSpec\+\+.so install -m0755 -d debian/libisospec\+\+2t64/usr/lib/s390x-linux-gnu rm -f debian/libisospec\+\+2t64/usr/lib/s390x-linux-gnu/libIsoSpec\+\+.so.2 ln -s libIsoSpec\+\+.so.2.2.1 debian/libisospec\+\+2t64/usr/lib/s390x-linux-gnu/libIsoSpec\+\+.so.2 dh_strip_nondeterminism -a dh_compress -a cd debian/libisospec++-dev cd debian/libisospec++2t64 cd debian/python3-isospec chmod a-x usr/share/doc/libisospec\+\+2t64/changelog.Debian chmod a-x usr/share/doc/libisospec\+\+-dev/changelog.Debian usr/share/man/man3/IsoSpec.3 usr/share/man/man3/IsoSpec_Allocator.3 usr/share/man/man3/IsoSpec_ConfEqual.3 usr/share/man/man3/IsoSpec_ConfOrder.3 usr/share/man/man3/IsoSpec_ConfOrderMarginal.3 usr/share/man/man3/IsoSpec_ConfOrderMarginalDescending.3 usr/share/man/man3/IsoSpec_DirtyAllocator.3 usr/share/man/man3/IsoSpec_FixedEnvelope.3 usr/share/man/man3/IsoSpec_Iso.3 usr/share/man/man3/IsoSpec_IsoGenerator.3 usr/share/man/man3/IsoSpec_IsoLayeredGenerator.3 usr/share/man/man3/IsoSpec_IsoOrderedGenerator.3 usr/share/man/man3/IsoSpec_IsoStochasticGenerator.3 usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3 usr/share/man/man3/IsoSpec_KeyHasher.3 usr/share/man/man3/IsoSpec_LayeredMarginal.3 usr/share/man/man3/IsoSpec_Marginal.3 usr/share/man/man3/IsoSpec_MarginalTrek.3 usr/share/man/man3/IsoSpec_OrderMarginalsBySizeDecresing.3 usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3 usr/share/man/man3/IsoSpec_ProbAndConfPtr.3 usr/share/man/man3/IsoSpec_ReverseOrder.3 usr/share/man/man3/IsoSpec_SSummator.3 usr/share/man/man3/IsoSpec_Summator.3 usr/share/man/man3/IsoSpec_TSummator.3 usr/share/man/man3/IsoSpec_TableOrder.3 usr/share/man/man3/pod_vector.3 usr/share/man/man3/unsafe_pod_vector.3 usr/share/man/man3/ws_match_res.3 gzip -9nf usr/share/doc/libisospec\+\+2t64/changelog.Debian chmod a-x usr/share/doc/python3-isospec/changelog.Debian cd '/<>' gzip -9nf usr/share/doc/python3-isospec/changelog.Debian cd '/<>' gzip -9nf usr/share/doc/libisospec\+\+-dev/changelog.Debian usr/share/man/man3/IsoSpec.3 usr/share/man/man3/IsoSpec_Allocator.3 usr/share/man/man3/IsoSpec_ConfEqual.3 usr/share/man/man3/IsoSpec_ConfOrder.3 usr/share/man/man3/IsoSpec_ConfOrderMarginal.3 usr/share/man/man3/IsoSpec_ConfOrderMarginalDescending.3 usr/share/man/man3/IsoSpec_DirtyAllocator.3 usr/share/man/man3/IsoSpec_FixedEnvelope.3 usr/share/man/man3/IsoSpec_Iso.3 usr/share/man/man3/IsoSpec_IsoGenerator.3 usr/share/man/man3/IsoSpec_IsoLayeredGenerator.3 usr/share/man/man3/IsoSpec_IsoOrderedGenerator.3 usr/share/man/man3/IsoSpec_IsoStochasticGenerator.3 usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3 usr/share/man/man3/IsoSpec_KeyHasher.3 usr/share/man/man3/IsoSpec_LayeredMarginal.3 usr/share/man/man3/IsoSpec_Marginal.3 usr/share/man/man3/IsoSpec_MarginalTrek.3 usr/share/man/man3/IsoSpec_OrderMarginalsBySizeDecresing.3 usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3 usr/share/man/man3/IsoSpec_ProbAndConfPtr.3 usr/share/man/man3/IsoSpec_ReverseOrder.3 usr/share/man/man3/IsoSpec_SSummator.3 usr/share/man/man3/IsoSpec_Summator.3 usr/share/man/man3/IsoSpec_TSummator.3 usr/share/man/man3/IsoSpec_TableOrder.3 usr/share/man/man3/pod_vector.3 usr/share/man/man3/unsafe_pod_vector.3 usr/share/man/man3/ws_match_res.3 cd '/<>' dh_fixperms -a find debian/libisospec++-dev -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/libisospec++2t64 -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/python3-isospec -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/libisospec\+\+2t64 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-isospec ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libisospec\+\+2t64/usr/share/doc -type f -a -true -a ! -regex 'debian/libisospec++2t64/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libisospec\+\+-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-isospec/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-isospec/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libisospec\+\+2t64/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libisospec\+\+-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libisospec++-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libisospec\+\+2t64/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-isospec/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libisospec\+\+-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libisospec\+\+2t64 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-isospec -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libisospec\+\+-dev/usr/share/man debian/libisospec\+\+-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-isospec/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libisospec\+\+2t64/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libisospec\+\+-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libisospec\+\+-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing -a dh_dwz -a dwz -- debian/libisospec\+\+2t64/usr/lib/s390x-linux-gnu/libIsoSpec\+\+.so.2.2.1 dwz -- debian/python3-isospec/usr/lib/python3/dist-packages/IsoSpecCppPy.cpython-312-s390x-linux-gnu.so dh_strip -a debugedit --build-id --build-id-seed=libisospec\+\+2t64/2.2.1-4.1build1 debian/libisospec\+\+2t64/usr/lib/s390x-linux-gnu/libIsoSpec\+\+.so.2.2.1 735775a2633449678d17f8f5ec66443f3fb7c557 install -m0755 -d debian/.debhelper/libisospec\+\+2t64/dbgsym-root/usr/lib/debug/.build-id/73 objcopy --only-keep-debug --compress-debug-sections debian/libisospec\+\+2t64/usr/lib/s390x-linux-gnu/libIsoSpec\+\+.so.2.2.1 debian/.debhelper/libisospec\+\+2t64/dbgsym-root/usr/lib/debug/.build-id/73/5775a2633449678d17f8f5ec66443f3fb7c557.debug strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives -R .gnu.lto_\* -R .gnu.debuglto_\* -N __gnu_lto_slim -N __gnu_lto_v1 debian/libisospec\+\+-dev/usr/lib/s390x-linux-gnu/libIsoSpec\+\+.a debugedit --build-id --build-id-seed=python3-isospec/2.2.1-4.1build1 debian/python3-isospec/usr/lib/python3/dist-packages/IsoSpecCppPy.cpython-312-s390x-linux-gnu.so 029b2e2ce86e0711841c481ce979ff2b13467801 readelf -W --section-headers debian/libisospec++-dev/usr/lib/s390x-linux-gnu/libIsoSpec++.a | sed -n '/^ *\[[ 0-9]*]/s/ *\[[ 0-9]*\] *//p' | awk 'BEGIN {rv=1} /^NULL/ {next} $1 ~ /^.(text|data|(preinit|init|fini)_array$)/ {if ($5 !~ /^0+$/) rv=0} END { exit rv}' install -m0755 -d debian/.debhelper/python3-isospec/dbgsym-root/usr/lib/debug/.build-id/02 objcopy --only-keep-debug --compress-debug-sections debian/python3-isospec/usr/lib/python3/dist-packages/IsoSpecCppPy.cpython-312-s390x-linux-gnu.so debian/.debhelper/python3-isospec/dbgsym-root/usr/lib/debug/.build-id/02/9b2e2ce86e0711841c481ce979ff2b13467801.debug chmod 0644 -- debian/.debhelper/libisospec\+\+2t64/dbgsym-root/usr/lib/debug/.build-id/73/5775a2633449678d17f8f5ec66443f3fb7c557.debug chown 0:0 -- debian/.debhelper/libisospec\+\+2t64/dbgsym-root/usr/lib/debug/.build-id/73/5775a2633449678d17f8f5ec66443f3fb7c557.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/7OmhfxVFlk/strip1suvXe debian/libisospec\+\+2t64/usr/lib/s390x-linux-gnu/libIsoSpec\+\+.so.2.2.1 chmod --reference debian/libisospec\+\+2t64/usr/lib/s390x-linux-gnu/libIsoSpec\+\+.so.2.2.1 /tmp/7OmhfxVFlk/strip1suvXe cat '/tmp/7OmhfxVFlk/strip1suvXe' > 'debian/libisospec++2t64/usr/lib/s390x-linux-gnu/libIsoSpec++.so.2.2.1' chmod --reference /tmp/7OmhfxVFlk/strip1suvXe debian/libisospec\+\+2t64/usr/lib/s390x-linux-gnu/libIsoSpec\+\+.so.2.2.1 objcopy --add-gnu-debuglink debian/.debhelper/libisospec\+\+2t64/dbgsym-root/usr/lib/debug/.build-id/73/5775a2633449678d17f8f5ec66443f3fb7c557.debug debian/libisospec\+\+2t64/usr/lib/s390x-linux-gnu/libIsoSpec\+\+.so.2.2.1 /tmp/7OmhfxVFlk/objcopyDdOSnQ chmod --reference debian/libisospec\+\+2t64/usr/lib/s390x-linux-gnu/libIsoSpec\+\+.so.2.2.1 /tmp/7OmhfxVFlk/objcopyDdOSnQ cat '/tmp/7OmhfxVFlk/objcopyDdOSnQ' > 'debian/libisospec++2t64/usr/lib/s390x-linux-gnu/libIsoSpec++.so.2.2.1' chmod --reference /tmp/7OmhfxVFlk/objcopyDdOSnQ debian/libisospec\+\+2t64/usr/lib/s390x-linux-gnu/libIsoSpec\+\+.so.2.2.1 install -m0755 -d debian/.debhelper/libisospec\+\+2t64/dbgsym-root/usr/share/doc ln -s libisospec\+\+2t64 debian/.debhelper/libisospec\+\+2t64/dbgsym-root/usr/share/doc/libisospec\+\+2t64-dbgsym install -m0755 -d debian/.debhelper/libisospec\+\+2t64 chmod 0644 -- debian/.debhelper/python3-isospec/dbgsym-root/usr/lib/debug/.build-id/02/9b2e2ce86e0711841c481ce979ff2b13467801.debug chown 0:0 -- debian/.debhelper/python3-isospec/dbgsym-root/usr/lib/debug/.build-id/02/9b2e2ce86e0711841c481ce979ff2b13467801.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/d_AgbCjQP1/stripGOG6Vy debian/python3-isospec/usr/lib/python3/dist-packages/IsoSpecCppPy.cpython-312-s390x-linux-gnu.so chmod --reference debian/python3-isospec/usr/lib/python3/dist-packages/IsoSpecCppPy.cpython-312-s390x-linux-gnu.so /tmp/d_AgbCjQP1/stripGOG6Vy cat '/tmp/d_AgbCjQP1/stripGOG6Vy' > 'debian/python3-isospec/usr/lib/python3/dist-packages/IsoSpecCppPy.cpython-312-s390x-linux-gnu.so' chmod --reference /tmp/d_AgbCjQP1/stripGOG6Vy debian/python3-isospec/usr/lib/python3/dist-packages/IsoSpecCppPy.cpython-312-s390x-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-isospec/dbgsym-root/usr/lib/debug/.build-id/02/9b2e2ce86e0711841c481ce979ff2b13467801.debug debian/python3-isospec/usr/lib/python3/dist-packages/IsoSpecCppPy.cpython-312-s390x-linux-gnu.so /tmp/d_AgbCjQP1/objcopyx1RCAJ chmod --reference debian/python3-isospec/usr/lib/python3/dist-packages/IsoSpecCppPy.cpython-312-s390x-linux-gnu.so /tmp/d_AgbCjQP1/objcopyx1RCAJ cat '/tmp/d_AgbCjQP1/objcopyx1RCAJ' > 'debian/python3-isospec/usr/lib/python3/dist-packages/IsoSpecCppPy.cpython-312-s390x-linux-gnu.so' chmod --reference /tmp/d_AgbCjQP1/objcopyx1RCAJ debian/python3-isospec/usr/lib/python3/dist-packages/IsoSpecCppPy.cpython-312-s390x-linux-gnu.so install -m0755 -d debian/.debhelper/python3-isospec/dbgsym-root/usr/share/doc ln -s python3-isospec debian/.debhelper/python3-isospec/dbgsym-root/usr/share/doc/python3-isospec-dbgsym install -m0755 -d debian/.debhelper/python3-isospec dh_makeshlibs -a rm -f debian/libisospec\+\+-dev/DEBIAN/shlibs rm -f debian/libisospec\+\+2t64/DEBIAN/shlibs install -m0755 -d debian/libisospec\+\+2t64/DEBIAN echo "libIsoSpec++ 2 libisospec++2t64 (>= 2.2.1)" >> debian/libisospec\+\+2t64/DEBIAN/shlibs chmod 0644 -- debian/libisospec\+\+2t64/DEBIAN/shlibs chown 0:0 -- debian/libisospec\+\+2t64/DEBIAN/shlibs mv debian/.debhelper/generated/libisospec\+\+2t64/triggers.new debian/.debhelper/generated/libisospec\+\+2t64/triggers mv debian/libisospec\+\+2t64.substvars.new debian/libisospec\+\+2t64.substvars rm -f debian/python3-isospec/DEBIAN/shlibs dh_shlibdeps -a install -m0755 -d debian/libisospec\+\+2t64/DEBIAN dpkg-shlibdeps -Tdebian/libisospec\+\+2t64.substvars debian/libisospec\+\+2t64/usr/lib/s390x-linux-gnu/libIsoSpec\+\+.so.2.2.1 install -m0755 -d debian/python3-isospec/DEBIAN dpkg-shlibdeps -Tdebian/python3-isospec.substvars debian/python3-isospec/usr/lib/python3/dist-packages/IsoSpecCppPy.cpython-312-s390x-linux-gnu.so dh_installdeb -a install -m0755 -d debian/libisospec\+\+-dev/DEBIAN install -m0755 -d debian/libisospec\+\+2t64/DEBIAN install -p -m0644 debian/.debhelper/generated/libisospec\+\+2t64/triggers debian/libisospec\+\+2t64/DEBIAN/triggers install -m0755 -d debian/python3-isospec/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/python3-isospec/DEBIAN/postinst cat debian/python3-isospec.postinst.debhelper >> debian/python3-isospec/DEBIAN/postinst chmod 0755 -- debian/python3-isospec/DEBIAN/postinst chown 0:0 -- debian/python3-isospec/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python3-isospec/DEBIAN/prerm cat debian/python3-isospec.prerm.debhelper >> debian/python3-isospec/DEBIAN/prerm chmod 0755 -- debian/python3-isospec/DEBIAN/prerm chown 0:0 -- debian/python3-isospec/DEBIAN/prerm dh_gencontrol -a install -m0755 -d debian/python3-isospec/DEBIAN echo misc:Depends= >> debian/python3-isospec.substvars echo misc:Pre-Depends= >> debian/python3-isospec.substvars install -m0755 -d debian/.debhelper/python3-isospec/dbgsym-root/DEBIAN dpkg-gencontrol -ppython3-isospec -ldebian/changelog -Tdebian/python3-isospec.substvars -Pdebian/.debhelper/python3-isospec/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=python3-isospec-dbgsym "-DDepends=python3-isospec (= \${binary:Version})" "-DDescription=debug symbols for python3-isospec" -DBuild-Ids=029b2e2ce86e0711841c481ce979ff2b13467801 -DSection=debug -DPackage-Type=ddeb -UMulti-Arch -UReplaces -UBreaks install -m0755 -d debian/libisospec\+\+2t64/DEBIAN echo misc:Depends= >> debian/libisospec++2t64.substvars echo misc:Pre-Depends= >> debian/libisospec++2t64.substvars install -m0755 -d debian/.debhelper/libisospec\+\+2t64/dbgsym-root/DEBIAN dpkg-gencontrol -plibisospec\+\+2t64 -ldebian/changelog -Tdebian/libisospec\+\+2t64.substvars -Pdebian/.debhelper/libisospec\+\+2t64/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=libisospec\+\+2t64-dbgsym "-DDepends=libisospec++2t64 (= \${binary:Version})" "-DDescription=debug symbols for libisospec++2t64" -DBuild-Ids=735775a2633449678d17f8f5ec66443f3fb7c557 -DSection=debug -DPackage-Type=ddeb -UReplaces -UBreaks install -m0755 -d debian/libisospec\+\+-dev/DEBIAN echo misc:Depends= >> debian/libisospec++-dev.substvars echo misc:Pre-Depends= >> debian/libisospec++-dev.substvars dpkg-gencontrol -plibisospec\+\+-dev -ldebian/changelog -Tdebian/libisospec\+\+-dev.substvars -Pdebian/libisospec\+\+-dev chmod 0644 -- debian/.debhelper/python3-isospec/dbgsym-root/DEBIAN/control chown 0:0 -- debian/.debhelper/python3-isospec/dbgsym-root/DEBIAN/control dpkg-gencontrol -ppython3-isospec -ldebian/changelog -Tdebian/python3-isospec.substvars -Pdebian/python3-isospec chmod 0644 -- debian/.debhelper/libisospec\+\+2t64/dbgsym-root/DEBIAN/control chown 0:0 -- debian/.debhelper/libisospec\+\+2t64/dbgsym-root/DEBIAN/control dpkg-gencontrol -plibisospec\+\+2t64 -ldebian/changelog -Tdebian/libisospec\+\+2t64.substvars -Pdebian/libisospec\+\+2t64 chmod 0644 -- debian/libisospec\+\+-dev/DEBIAN/control chown 0:0 -- debian/libisospec\+\+-dev/DEBIAN/control chmod 0644 -- debian/libisospec\+\+2t64/DEBIAN/control chown 0:0 -- debian/libisospec\+\+2t64/DEBIAN/control chmod 0644 -- debian/python3-isospec/DEBIAN/control chown 0:0 -- debian/python3-isospec/DEBIAN/control dh_md5sums -a install -m0755 -d debian/python3-isospec/DEBIAN install -m0755 -d debian/libisospec\+\+-dev/DEBIAN cd debian/python3-isospec >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums install -m0755 -d debian/libisospec\+\+2t64/DEBIAN cd debian/libisospec++-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/python3-isospec/DEBIAN/md5sums chown 0:0 -- debian/python3-isospec/DEBIAN/md5sums install -m0755 -d debian/.debhelper/python3-isospec/dbgsym-root/DEBIAN cd debian/libisospec++2t64 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/.debhelper/python3-isospec/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libisospec\+\+-dev/DEBIAN/md5sums chown 0:0 -- debian/libisospec\+\+-dev/DEBIAN/md5sums chmod 0644 -- debian/libisospec\+\+2t64/DEBIAN/md5sums chown 0:0 -- debian/libisospec\+\+2t64/DEBIAN/md5sums install -m0755 -d debian/.debhelper/libisospec\+\+2t64/dbgsym-root/DEBIAN cd debian/.debhelper/libisospec++2t64/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/python3-isospec/dbgsym-root/DEBIAN/md5sums chown 0:0 -- debian/.debhelper/python3-isospec/dbgsym-root/DEBIAN/md5sums chmod 0644 -- debian/.debhelper/libisospec\+\+2t64/dbgsym-root/DEBIAN/md5sums chown 0:0 -- debian/.debhelper/libisospec\+\+2t64/dbgsym-root/DEBIAN/md5sums dh_builddeb -a dpkg-deb --build debian/libisospec\+\+-dev .. dpkg-deb --root-owner-group --build debian/.debhelper/python3-isospec/dbgsym-root debian/.debhelper/scratch-space/build-python3-isospec dpkg-deb --root-owner-group --build debian/.debhelper/libisospec\+\+2t64/dbgsym-root debian/.debhelper/scratch-space/build-libisospec\+\+2t64 INFO: pkgstriptranslations version 154 INFO: pkgstriptranslations version 154 pkgstriptranslations: processing python3-isospec-dbgsym (in debian/.debhelper/python3-isospec/dbgsym-root); do_strip: , oemstrip: pkgstriptranslations: processing libisospec++-dev (in debian/libisospec++-dev); do_strip: , oemstrip: INFO: pkgstriptranslations version 154 pkgstriptranslations: processing libisospec++2t64-dbgsym (in debian/.debhelper/libisospec++2t64/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/.debhelper/python3-isospec/dbgsym-root/DEBIAN/control, package python3-isospec-dbgsym, directory debian/.debhelper/python3-isospec/dbgsym-root dpkg-deb: building package 'python3-isospec-dbgsym' in 'debian/.debhelper/scratch-space/build-python3-isospec/python3-isospec-dbgsym_2.2.1-4.1build1_s390x.deb'. pkgstripfiles: processing control file: debian/libisospec++-dev/DEBIAN/control, package libisospec++-dev, directory debian/libisospec++-dev pkgstripfiles: processing control file: debian/.debhelper/libisospec++2t64/dbgsym-root/DEBIAN/control, package libisospec++2t64-dbgsym, directory debian/.debhelper/libisospec++2t64/dbgsym-root Renaming python3-isospec-dbgsym_2.2.1-4.1build1_s390x.deb to python3-isospec-dbgsym_2.2.1-4.1build1_s390x.ddeb mv debian/.debhelper/scratch-space/build-python3-isospec/python3-isospec-dbgsym_2.2.1-4.1build1_s390x.deb ../python3-isospec-dbgsym_2.2.1-4.1build1_s390x.ddeb dpkg-deb: building package 'libisospec++2t64-dbgsym' in 'debian/.debhelper/scratch-space/build-libisospec++2t64/libisospec++2t64-dbgsym_2.2.1-4.1build1_s390x.deb'. Searching for duplicated docs in dependency libisospec++2t64... symlinking changelog.Debian.gz in libisospec++-dev to file in libisospec++2t64 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libisospec++-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libisospec++-dev' in '../libisospec++-dev_2.2.1-4.1build1_s390x.deb'. Renaming libisospec++2t64-dbgsym_2.2.1-4.1build1_s390x.deb to libisospec++2t64-dbgsym_2.2.1-4.1build1_s390x.ddeb mv debian/.debhelper/scratch-space/build-libisospec\+\+2t64/libisospec\+\+2t64-dbgsym_2.2.1-4.1build1_s390x.deb ../libisospec\+\+2t64-dbgsym_2.2.1-4.1build1_s390x.ddeb dpkg-deb --build debian/python3-isospec .. dpkg-deb --build debian/libisospec\+\+2t64 .. INFO: pkgstriptranslations version 154 pkgstriptranslations: processing python3-isospec (in debian/python3-isospec); do_strip: , oemstrip: INFO: pkgstriptranslations version 154 pkgstriptranslations: processing libisospec++2t64 (in debian/libisospec++2t64); do_strip: , oemstrip: pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/python3-isospec/DEBIAN/control, package python3-isospec, directory debian/python3-isospec INFO: pkgstripfiles: waiting for lock (python3-isospec) ... pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/libisospec++2t64/DEBIAN/control, package libisospec++2t64, directory debian/libisospec++2t64 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libisospec++2t64 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libisospec++2t64' in '../libisospec++2t64_2.2.1-4.1build1_s390x.deb'. pkgstripfiles: Running PNG optimization (using 4 cpus) for package python3-isospec ... pkgstripfiles: No PNG files. dpkg-deb: building package 'python3-isospec' in '../python3-isospec_2.2.1-4.1build1_s390x.deb'. dpkg-genbuildinfo --build=any -O../isospec_2.2.1-4.1build1_s390x.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../isospec_2.2.1-4.1build1_s390x.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2024-04-03T05:45:25Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ isospec_2.2.1-4.1build1_s390x.changes: -------------------------------------- Format: 1.8 Date: Sun, 31 Mar 2024 01:25:59 +0000 Source: isospec Binary: libisospec++-dev libisospec++2t64 python3-isospec Built-For-Profiles: noudeb Architecture: s390x Version: 2.2.1-4.1build1 Distribution: noble-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Steve Langasek Description: libisospec++-dev - Isotopic fine structure calculator (C++ development files) libisospec++2t64 - Isotopic fine structure calculator (C++ runtime) python3-isospec - Isotopic fine structure calculator for Python 3 Changes: isospec (2.2.1-4.1build1) noble; urgency=medium . * No-change rebuild for CVE-2024-3094 Checksums-Sha1: 944d8b5da4c88fa8897cddbfbdfab45e5a999fe5 12869 isospec_2.2.1-4.1build1_s390x.buildinfo e185dc63ee7339742921b10be09f40414a6874ed 134454 libisospec++-dev_2.2.1-4.1build1_s390x.deb 6bf218a8534c5859e88dcddb665710b89975287c 292096 libisospec++2t64-dbgsym_2.2.1-4.1build1_s390x.ddeb c920af18e3be14ecf76cdab5d6a91f5e8f97cadb 72490 libisospec++2t64_2.2.1-4.1build1_s390x.deb 61433e3052771208e54bb56a2a3e093d3aeb8b3b 311466 python3-isospec-dbgsym_2.2.1-4.1build1_s390x.ddeb da7538e660e792bd384a2b115d9b8a48cd394e23 97506 python3-isospec_2.2.1-4.1build1_s390x.deb Checksums-Sha256: 1bdb5625e8550e1286acb3e5cbcd1f779b8787998498d600aae1c6f4d23b5ade 12869 isospec_2.2.1-4.1build1_s390x.buildinfo 558f7c66bd7fab00f4c90bd34572a75db8317d60caf25d9917222244128c6e38 134454 libisospec++-dev_2.2.1-4.1build1_s390x.deb 6877ea01d166110376b9a6ddb0d73b1a5aa36c42e43d58c926d2ac5fb646a67b 292096 libisospec++2t64-dbgsym_2.2.1-4.1build1_s390x.ddeb eeaf25f8c69b9474b2a3da240ac403265dc1fc6f93e29e90b0fabe77b6f170ba 72490 libisospec++2t64_2.2.1-4.1build1_s390x.deb b9fbd490f39a00060de10c5816b431e1abbf033e3c6b7cc04876ba194581f4b0 311466 python3-isospec-dbgsym_2.2.1-4.1build1_s390x.ddeb 84141beab29e4d8c77e37dc6d3be717fc27022406b1ebcd2464d6591fcd6a13d 97506 python3-isospec_2.2.1-4.1build1_s390x.deb Files: 4cad083f13891885c4e20368822b6143 12869 science optional isospec_2.2.1-4.1build1_s390x.buildinfo 7f9e7127ed017727f51b7b4b6388fda4 134454 libdevel optional libisospec++-dev_2.2.1-4.1build1_s390x.deb 197257d3e1c43ac71b25ace882596eee 292096 debug optional libisospec++2t64-dbgsym_2.2.1-4.1build1_s390x.ddeb 14fdd0e90acf2270d288ad6cffbc3fee 72490 libs optional libisospec++2t64_2.2.1-4.1build1_s390x.deb 6f73461061455a7dda1f48dd535651ac 311466 debug optional python3-isospec-dbgsym_2.2.1-4.1build1_s390x.ddeb 9188f0544db1cfe1ca984fec0c06a5c4 97506 python optional python3-isospec_2.2.1-4.1build1_s390x.deb Original-Maintainer: The Debichem Group /<>/isospec_2.2.1-4.1build1_s390x.changes.new could not be renamed to /<>/isospec_2.2.1-4.1build1_s390x.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: isospec Binary: libisospec++-dev libisospec++2t64 libisospec++2t64-dbgsym python3-isospec python3-isospec-dbgsym Architecture: s390x Version: 2.2.1-4.1build1 Checksums-Md5: 7f9e7127ed017727f51b7b4b6388fda4 134454 libisospec++-dev_2.2.1-4.1build1_s390x.deb 197257d3e1c43ac71b25ace882596eee 292096 libisospec++2t64-dbgsym_2.2.1-4.1build1_s390x.ddeb 14fdd0e90acf2270d288ad6cffbc3fee 72490 libisospec++2t64_2.2.1-4.1build1_s390x.deb 6f73461061455a7dda1f48dd535651ac 311466 python3-isospec-dbgsym_2.2.1-4.1build1_s390x.ddeb 9188f0544db1cfe1ca984fec0c06a5c4 97506 python3-isospec_2.2.1-4.1build1_s390x.deb Checksums-Sha1: e185dc63ee7339742921b10be09f40414a6874ed 134454 libisospec++-dev_2.2.1-4.1build1_s390x.deb 6bf218a8534c5859e88dcddb665710b89975287c 292096 libisospec++2t64-dbgsym_2.2.1-4.1build1_s390x.ddeb c920af18e3be14ecf76cdab5d6a91f5e8f97cadb 72490 libisospec++2t64_2.2.1-4.1build1_s390x.deb 61433e3052771208e54bb56a2a3e093d3aeb8b3b 311466 python3-isospec-dbgsym_2.2.1-4.1build1_s390x.ddeb da7538e660e792bd384a2b115d9b8a48cd394e23 97506 python3-isospec_2.2.1-4.1build1_s390x.deb Checksums-Sha256: 558f7c66bd7fab00f4c90bd34572a75db8317d60caf25d9917222244128c6e38 134454 libisospec++-dev_2.2.1-4.1build1_s390x.deb 6877ea01d166110376b9a6ddb0d73b1a5aa36c42e43d58c926d2ac5fb646a67b 292096 libisospec++2t64-dbgsym_2.2.1-4.1build1_s390x.ddeb eeaf25f8c69b9474b2a3da240ac403265dc1fc6f93e29e90b0fabe77b6f170ba 72490 libisospec++2t64_2.2.1-4.1build1_s390x.deb b9fbd490f39a00060de10c5816b431e1abbf033e3c6b7cc04876ba194581f4b0 311466 python3-isospec-dbgsym_2.2.1-4.1build1_s390x.ddeb 84141beab29e4d8c77e37dc6d3be717fc27022406b1ebcd2464d6591fcd6a13d 97506 python3-isospec_2.2.1-4.1build1_s390x.deb Build-Origin: Ubuntu Build-Architecture: s390x Build-Date: Wed, 03 Apr 2024 05:45:24 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: adduser (= 3.137ubuntu1), apt (= 2.7.14build2), autoconf (= 2.71-3), automake (= 1:1.16.5-1.3ubuntu1), autopoint (= 0.21-14ubuntu1), autotools-dev (= 20220109.1), base-files (= 13ubuntu9), base-passwd (= 3.6.3), bash (= 5.2.21-2ubuntu4), binutils (= 2.42-4ubuntu2), binutils-common (= 2.42-4ubuntu2), binutils-s390x-linux-gnu (= 2.42-4ubuntu2), bsdextrautils (= 2.39.3-9ubuntu4), bsdutils (= 1:2.39.3-9ubuntu4), build-essential (= 12.10ubuntu1), bzip2 (= 1.0.8-5.1), cmake (= 3.28.3-1build6), cmake-data (= 3.28.3-1build6), coreutils (= 9.4-3ubuntu5), cpp (= 4:13.2.0-7ubuntu1), cpp-13 (= 13.2.0-23ubuntu3), cpp-13-s390x-linux-gnu (= 13.2.0-23ubuntu3), cpp-s390x-linux-gnu (= 4:13.2.0-7ubuntu1), d-shlibs (= 0.106), dash (= 0.5.12-6ubuntu5), debconf (= 1.5.86), debhelper (= 13.14.1ubuntu5), debianutils (= 5.17build1), debugedit (= 1:5.0-5build1), dh-autoreconf (= 20), dh-exec (= 0.29build1), dh-python (= 6.20240401), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.10-1), doxygen (= 1.9.8+ds-2build5), dpkg (= 1.22.6ubuntu6), dpkg-dev (= 1.22.6ubuntu6), dwz (= 0.15-1build6), file (= 1:5.45-3build1), findutils (= 4.9.0-5), 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2024a-1ubuntu1), ubuntu-keyring (= 2023.11.28.1), ucf (= 3.0043+nmu1), util-linux (= 2.39.3-9ubuntu4), x11-common (= 1:7.7+23ubuntu2), xdg-utils (= 1.1.3-4.1ubuntu3), xfonts-encodings (= 1:1.0.5-0ubuntu2), xfonts-utils (= 1:7.7+6build2), xz-utils (= 5.6.1+really5.4.5-1), zlib1g (= 1:1.3.dfsg-3.1ubuntu2), zlib1g-dev (= 1:1.3.dfsg-3.1ubuntu2) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1711848359" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libisospec++-dev_2.2.1-4.1build1_s390x.deb ------------------------------------------ new Debian package, version 2.0. size 134454 bytes: control archive=2113 bytes. 722 bytes, 19 lines control 3949 bytes, 52 lines md5sums Package: libisospec++-dev Source: isospec Version: 2.2.1-4.1build1 Architecture: s390x Maintainer: Ubuntu Developers Installed-Size: 463 Depends: libisospec++2t64 (= 2.2.1-4.1build1) Recommends: libisospec++-doc Section: libdevel Priority: optional Multi-Arch: same Homepage: https://github.com/MatteoLacki/IsoSpec Description: Isotopic fine structure calculator (C++ development files) IsoSpec implements an algorithm for fast computation of isotopologues of chemical substances that can alternate between joint probability and peak height threshold. . This package ships the development files. Original-Maintainer: The Debichem Group drwxr-xr-x root/root 0 2024-03-31 01:25 ./ drwxr-xr-x root/root 0 2024-03-31 01:25 ./usr/ drwxr-xr-x root/root 0 2024-03-31 01:25 ./usr/include/ drwxr-xr-x root/root 0 2024-03-31 01:25 ./usr/include/IsoSpec++/ -rw-r--r-- root/root 1593 2022-11-11 13:39 ./usr/include/IsoSpec++/allocator.h -rw-r--r-- root/root 5984 2022-11-11 13:39 ./usr/include/IsoSpec++/btrd.h -rw-r--r-- root/root 970 2022-11-11 13:39 ./usr/include/IsoSpec++/conf.h -rw-r--r-- root/root 7121 2022-11-11 13:39 ./usr/include/IsoSpec++/cwrapper.h -rw-r--r-- root/root 1414 2022-11-11 13:39 ./usr/include/IsoSpec++/dirtyAllocator.h -rw-r--r-- root/root 1771 2022-11-11 13:39 ./usr/include/IsoSpec++/element_tables.h -rw-r--r-- root/root 1276 2022-11-11 13:39 ./usr/include/IsoSpec++/fasta.h -rw-r--r-- root/root 8667 2022-11-11 13:39 ./usr/include/IsoSpec++/fixedEnvelopes.h -rw-r--r-- root/root 2736 2022-11-11 13:39 ./usr/include/IsoSpec++/isoMath.h -rw-r--r-- root/root 27807 2022-11-11 13:39 ./usr/include/IsoSpec++/isoSpec++.h -rw-r--r-- root/root 16465 2022-11-11 13:39 ./usr/include/IsoSpec++/marginalTrek++.h -rw-r--r-- root/root 4844 2022-11-11 13:39 ./usr/include/IsoSpec++/misc.h -rw-r--r-- root/root 1684 2022-11-11 13:39 ./usr/include/IsoSpec++/mman.h -rw-r--r-- root/root 3987 2022-11-11 13:39 ./usr/include/IsoSpec++/operators.h -rw-r--r-- root/root 3472 2022-11-11 13:39 ./usr/include/IsoSpec++/platform.h -rw-r--r-- root/root 933 2022-11-11 13:39 ./usr/include/IsoSpec++/platform_incl.h -rw-r--r-- root/root 11294 2022-11-11 13:39 ./usr/include/IsoSpec++/pod_vector.h -rw-r--r-- root/root 2307 2022-11-11 13:39 ./usr/include/IsoSpec++/summator.h drwxr-xr-x root/root 0 2024-03-31 01:25 ./usr/lib/ drwxr-xr-x root/root 0 2024-03-31 01:25 ./usr/lib/s390x-linux-gnu/ drwxr-xr-x root/root 0 2024-03-31 01:25 ./usr/lib/s390x-linux-gnu/cmake/ drwxr-xr-x root/root 0 2024-03-31 01:25 ./usr/lib/s390x-linux-gnu/cmake/isospec++/ -rw-r--r-- root/root 881 2022-11-11 13:39 ./usr/lib/s390x-linux-gnu/cmake/isospec++/FindIsoSpec++.cmake -rw-r--r-- root/root 569 2024-03-31 01:25 ./usr/lib/s390x-linux-gnu/cmake/isospec++/IsoSpec++Config.cmake -rw-r--r-- root/root 281562 2024-03-31 01:25 ./usr/lib/s390x-linux-gnu/libIsoSpec++.a lrwxrwxrwx root/root 0 2024-03-31 01:25 ./usr/lib/s390x-linux-gnu/libIsoSpec++.so -> libIsoSpec++.so.2.2.1 drwxr-xr-x root/root 0 2024-03-31 01:25 ./usr/lib/s390x-linux-gnu/pkgconfig/ -rw-r--r-- root/root 280 2024-03-31 01:25 ./usr/lib/s390x-linux-gnu/pkgconfig/libisospec++.pc drwxr-xr-x root/root 0 2024-03-31 01:25 ./usr/share/ drwxr-xr-x root/root 0 2024-03-31 01:25 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-03-31 01:25 ./usr/share/doc/libisospec++-dev/ lrwxrwxrwx root/root 0 2024-03-31 01:25 ./usr/share/doc/libisospec++-dev/changelog.Debian.gz -> ../libisospec++2t64/changelog.Debian.gz -rw-r--r-- root/root 2610 2023-08-25 10:18 ./usr/share/doc/libisospec++-dev/copyright drwxr-xr-x root/root 0 2024-03-31 01:25 ./usr/share/man/ drwxr-xr-x root/root 0 2024-03-31 01:25 ./usr/share/man/man3/ -rw-r--r-- root/root 4123 2024-03-31 01:25 ./usr/share/man/man3/IsoSpec.3.gz -rw-r--r-- root/root 565 2024-03-31 01:25 ./usr/share/man/man3/IsoSpec_Allocator.3.gz -rw-r--r-- root/root 418 2024-03-31 01:25 ./usr/share/man/man3/IsoSpec_ConfEqual.3.gz -rw-r--r-- root/root 357 2024-03-31 01:25 ./usr/share/man/man3/IsoSpec_ConfOrder.3.gz -rw-r--r-- root/root 422 2024-03-31 01:25 ./usr/share/man/man3/IsoSpec_ConfOrderMarginal.3.gz -rw-r--r-- root/root 428 2024-03-31 01:25 ./usr/share/man/man3/IsoSpec_ConfOrderMarginalDescending.3.gz -rw-r--r-- root/root 498 2024-03-31 01:25 ./usr/share/man/man3/IsoSpec_DirtyAllocator.3.gz -rw-r--r-- root/root 2389 2024-03-31 01:25 ./usr/share/man/man3/IsoSpec_FixedEnvelope.3.gz -rw-r--r-- root/root 2836 2024-03-31 01:25 ./usr/share/man/man3/IsoSpec_Iso.3.gz -rw-r--r-- root/root 2080 2024-03-31 01:25 ./usr/share/man/man3/IsoSpec_IsoGenerator.3.gz -rw-r--r-- root/root 2189 2024-03-31 01:25 ./usr/share/man/man3/IsoSpec_IsoLayeredGenerator.3.gz -rw-r--r-- root/root 2107 2024-03-31 01:25 ./usr/share/man/man3/IsoSpec_IsoOrderedGenerator.3.gz -rw-r--r-- root/root 1964 2024-03-31 01:25 ./usr/share/man/man3/IsoSpec_IsoStochasticGenerator.3.gz -rw-r--r-- root/root 2834 2024-03-31 01:25 ./usr/share/man/man3/IsoSpec_IsoThresholdGenerator.3.gz -rw-r--r-- root/root 426 2024-03-31 01:25 ./usr/share/man/man3/IsoSpec_KeyHasher.3.gz -rw-r--r-- root/root 1977 2024-03-31 01:25 ./usr/share/man/man3/IsoSpec_LayeredMarginal.3.gz -rw-r--r-- root/root 2422 2024-03-31 01:25 ./usr/share/man/man3/IsoSpec_Marginal.3.gz -rw-r--r-- root/root 1629 2024-03-31 01:25 ./usr/share/man/man3/IsoSpec_MarginalTrek.3.gz -rw-r--r-- root/root 467 2024-03-31 01:25 ./usr/share/man/man3/IsoSpec_OrderMarginalsBySizeDecresing.3.gz -rw-r--r-- root/root 2229 2024-03-31 01:25 ./usr/share/man/man3/IsoSpec_PrecalculatedMarginal.3.gz -rw-r--r-- root/root 469 2024-03-31 01:25 ./usr/share/man/man3/IsoSpec_ProbAndConfPtr.3.gz -rw-r--r-- root/root 420 2024-03-31 01:25 ./usr/share/man/man3/IsoSpec_ReverseOrder.3.gz -rw-r--r-- root/root 423 2024-03-31 01:25 ./usr/share/man/man3/IsoSpec_SSummator.3.gz -rw-r--r-- root/root 395 2024-03-31 01:25 ./usr/share/man/man3/IsoSpec_Summator.3.gz -rw-r--r-- root/root 397 2024-03-31 01:25 ./usr/share/man/man3/IsoSpec_TSummator.3.gz -rw-r--r-- root/root 456 2024-03-31 01:25 ./usr/share/man/man3/IsoSpec_TableOrder.3.gz -rw-r--r-- root/root 1258 2024-03-31 01:25 ./usr/share/man/man3/pod_vector.3.gz -rw-r--r-- root/root 1527 2024-03-31 01:25 ./usr/share/man/man3/unsafe_pod_vector.3.gz -rw-r--r-- root/root 352 2024-03-31 01:25 ./usr/share/man/man3/ws_match_res.3.gz libisospec++2t64_2.2.1-4.1build1_s390x.deb ------------------------------------------ new Debian package, version 2.0. size 72490 bytes: control archive=929 bytes. 875 bytes, 22 lines control 319 bytes, 4 lines md5sums 43 bytes, 1 lines shlibs 75 bytes, 2 lines triggers Package: libisospec++2t64 Source: isospec Version: 2.2.1-4.1build1 Architecture: s390x Maintainer: Ubuntu Developers Installed-Size: 202 Depends: libc6 (>= 2.38), libgcc-s1 (>= 3.3.1), libstdc++6 (>= 13.1) Suggests: libisospec++-doc Breaks: libisospec++1, libisospec++2 (<< 2.2.1-4.1build1) Replaces: libisospec++1, libisospec++2 Provides: libisospec++2 (= 2.2.1-4.1build1) Section: libs Priority: optional Multi-Arch: same Homepage: https://github.com/MatteoLacki/IsoSpec Description: Isotopic fine structure calculator (C++ runtime) IsoSpec implements an algorithm for fast computation of isotopologues of chemical substances that can alternate between joint probability and peak height threshold. . This package ships the runtime shared library. Original-Maintainer: The Debichem Group drwxr-xr-x root/root 0 2024-03-31 01:25 ./ drwxr-xr-x root/root 0 2024-03-31 01:25 ./usr/ drwxr-xr-x root/root 0 2024-03-31 01:25 ./usr/lib/ drwxr-xr-x root/root 0 2024-03-31 01:25 ./usr/lib/s390x-linux-gnu/ lrwxrwxrwx root/root 0 2024-03-31 01:25 ./usr/lib/s390x-linux-gnu/libIsoSpec++.so.2 -> libIsoSpec++.so.2.2.1 -rw-r--r-- root/root 186896 2024-03-31 01:25 ./usr/lib/s390x-linux-gnu/libIsoSpec++.so.2.2.1 drwxr-xr-x root/root 0 2024-03-31 01:25 ./usr/share/ drwxr-xr-x root/root 0 2024-03-31 01:25 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-03-31 01:25 ./usr/share/doc/libisospec++2t64/ -rw-r--r-- root/root 1893 2024-03-31 01:25 ./usr/share/doc/libisospec++2t64/changelog.Debian.gz -rw-r--r-- root/root 2610 2023-08-25 10:18 ./usr/share/doc/libisospec++2t64/copyright drwxr-xr-x root/root 0 2024-03-31 01:25 ./usr/share/lintian/ drwxr-xr-x root/root 0 2024-03-31 01:25 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 66 2024-02-28 11:49 ./usr/share/lintian/overrides/libisospec++2t64 python3-isospec_2.2.1-4.1build1_s390x.deb ----------------------------------------- new Debian package, version 2.0. size 97506 bytes: control archive=1597 bytes. 875 bytes, 18 lines control 1667 bytes, 18 lines md5sums 277 bytes, 12 lines * postinst #!/bin/sh 390 bytes, 12 lines * prerm #!/bin/sh Package: python3-isospec Source: isospec Version: 2.2.1-4.1build1 Architecture: s390x Maintainer: Ubuntu Developers Installed-Size: 298 Depends: libc6 (>= 2.38), libgcc-s1 (>= 3.3.1), libstdc++6 (>= 13.1), python3 (<< 3.13), python3 (>= 3.12~), python3-cffi-backend-api-min (<= 9729), python3-cffi-backend-api-max (>= 9729), python3:any Recommends: python3-scipy, libisospec++-doc Section: python Priority: optional Homepage: https://github.com/MatteoLacki/IsoSpec Description: Isotopic fine structure calculator for Python 3 IsoSpec implements an algorithm for fast computation of isotopologues of chemical substances that can alternate between joint probability and peak height threshold. . This package provides the package's Python 3 interface. Original-Maintainer: The Debichem Group drwxr-xr-x root/root 0 2024-03-31 01:25 ./ drwxr-xr-x root/root 0 2024-03-31 01:25 ./usr/ drwxr-xr-x root/root 0 2024-03-31 01:25 ./usr/lib/ drwxr-xr-x root/root 0 2024-03-31 01:25 ./usr/lib/python3/ drwxr-xr-x root/root 0 2024-03-31 01:25 ./usr/lib/python3/dist-packages/ -rw-r--r-- root/root 207376 2024-03-31 01:25 ./usr/lib/python3/dist-packages/IsoSpecCppPy.cpython-312-s390x-linux-gnu.so drwxr-xr-x root/root 0 2024-03-31 01:25 ./usr/lib/python3/dist-packages/IsoSpecPy-2.2.1.egg-info/ -rw-r--r-- root/root 1193 2024-03-31 01:25 ./usr/lib/python3/dist-packages/IsoSpecPy-2.2.1.egg-info/PKG-INFO -rw-r--r-- root/root 1 2024-03-31 01:25 ./usr/lib/python3/dist-packages/IsoSpecPy-2.2.1.egg-info/dependency_links.txt -rw-r--r-- root/root 1 2024-03-31 01:25 ./usr/lib/python3/dist-packages/IsoSpecPy-2.2.1.egg-info/not-zip-safe -rw-r--r-- root/root 21 2024-03-31 01:25 ./usr/lib/python3/dist-packages/IsoSpecPy-2.2.1.egg-info/requires.txt -rw-r--r-- root/root 23 2024-03-31 01:25 ./usr/lib/python3/dist-packages/IsoSpecPy-2.2.1.egg-info/top_level.txt drwxr-xr-x root/root 0 2024-03-31 01:25 ./usr/lib/python3/dist-packages/IsoSpecPy/ -rw-r--r-- root/root 1058 2022-11-11 13:39 ./usr/lib/python3/dist-packages/IsoSpecPy/Advanced.py -rw-r--r-- root/root 2519 2022-11-11 13:39 ./usr/lib/python3/dist-packages/IsoSpecPy/Distributions.py -rw-r--r-- root/root 1659 2022-11-11 13:39 ./usr/lib/python3/dist-packages/IsoSpecPy/Formulas.py -rw-r--r-- root/root 33819 2022-11-11 13:39 ./usr/lib/python3/dist-packages/IsoSpecPy/IsoSpecPy.py -rw-r--r-- root/root 11058 2022-11-11 13:39 ./usr/lib/python3/dist-packages/IsoSpecPy/IsoSpecPyOld.py -rw-r--r-- root/root 1384 2022-11-11 13:39 ./usr/lib/python3/dist-packages/IsoSpecPy/PeriodicTbl.py -rw-r--r-- root/root 428 2022-11-11 13:39 ./usr/lib/python3/dist-packages/IsoSpecPy/__init__.py -rw-r--r-- root/root 4368 2022-11-11 13:39 ./usr/lib/python3/dist-packages/IsoSpecPy/approximations.py -rw-r--r-- root/root 268 2022-11-11 13:39 ./usr/lib/python3/dist-packages/IsoSpecPy/confs_passthrough.py -rw-r--r-- root/root 9705 2022-11-11 13:39 ./usr/lib/python3/dist-packages/IsoSpecPy/isoFFI.py drwxr-xr-x root/root 0 2024-03-31 01:25 ./usr/share/ drwxr-xr-x root/root 0 2024-03-31 01:25 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-03-31 01:25 ./usr/share/doc/python3-isospec/ -rw-r--r-- root/root 1889 2024-03-31 01:25 ./usr/share/doc/python3-isospec/changelog.Debian.gz -rw-r--r-- root/root 2610 2023-08-25 10:18 ./usr/share/doc/python3-isospec/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: s390x Build Type: any Build-Space: 54412 Build-Time: 165 Distribution: noble-proposed Host Architecture: s390x Install-Time: 228 Job: isospec_2.2.1-4.1build1.dsc Machine Architecture: s390x Package: isospec Package-Time: 395 Source-Version: 2.2.1-4.1build1 Space: 54412 Status: successful Version: 2.2.1-4.1build1 -------------------------------------------------------------------------------- Finished at 2024-04-03T05:45:25Z Build needed 00:06:35, 54412k disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=noble --arch=s390x PACKAGEBUILD-27974325 Scanning for processes to kill in build PACKAGEBUILD-27974325