igv fails to build from source due to tests trying to access the internet

Bug #2056094 reported by Vladimir Petko
6
This bug affects 1 person
Affects Status Importance Assigned to Milestone
igv (Debian)
Fix Released
Unknown
igv (Ubuntu)
Fix Released
Undecided
Unassigned

Bug Description

Tests fail when building the package with the following exceptions[1]:

org.broad.igv.sam.mods.BaseModificationCountsTest > incrementCounts2 FAILED
    java.net.UnknownHostException: dl.dropboxusercontent.com

org.broad.igv.util.blat.BlatClientTest > classMethod FAILED
    java.net.UnknownHostException: s3.amazonaws.com

org.broad.igv.tdf.TDFReaderTest > testReader FAILED
    org.broad.igv.exceptions.DataLoadException: An error occurred while accessing: http://data.broadinstitute.org/igvdata/tutorials/hg18/wgEncodeBroadChipSeqSignalK562H3k4me3.wig.gz.tdf<br>Error loading file:

[1] https://launchpad.net/ubuntu/+source/igv/2.17.1+dfsg-1/+build/27788297

Vladimir Petko (vpa1977)
description: updated
Vladimir Petko (vpa1977)
summary: - igv fails to build from source (on launchpad builder) due to the AWT
- headless exception
+ igv fails to build from source due to test failures
summary: - igv fails to build from source due to test failures
+ igv fails to build from source due to tests trying to access the
+ internet
description: updated
description: updated
Vladimir Petko (vpa1977)
description: updated
Changed in igv (Debian):
status: Unknown → New
Changed in igv (Debian):
status: New → Fix Released
Revision history for this message
Vladimir Petko (vpa1977) wrote :

This bug was fixed in the package igv - 2.17.3+dfsg-1

---------------
igv (2.17.3+dfsg-1) unstable; urgency=medium

  [ Vladimir Petko ]
  * d/p/skip_tests_network.patch: add tests requiring internet
    (Closes: #1065646).

  [ Andreas Tille ]
  * New upstream version
  * d/watch: Fix download file name

 -- Andreas Tille <email address hidden> Fri, 08 Mar 2024 18:55:28 +0100

Changed in igv (Ubuntu):
status: New → Fix Released
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