idba 1.1.3-2 source package in Ubuntu


idba (1.1.3-2) unstable; urgency=medium

  * Team upload.

  * Install all IDBA flavours, not only IDBA-Hybrid
    - added help2man-generated man pages
    - removed debian/links to save idba binary and .1
  * Moved peripheral binaries to new dir usr/lib/idba/
  * Added references to OMICtools registry
  * Bumped Debian policy compliance to 4.0.1

 -- Steffen Moeller <email address hidden>  Mon, 07 Aug 2017 17:40:39 +0200

Upload details

Uploaded by:
Debian Med on 2017-08-08
Uploaded to:
Original maintainer:
Debian Med
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Cosmic release on 2018-05-01 universe misc
Bionic release on 2017-10-24 universe misc
Artful release on 2017-08-08 universe misc


File Size SHA-256 Checksum
idba_1.1.3-2.dsc 1.9 KiB fcef7d77efd0fd81417f84228e26625654fc10e7bad698c82a150cd005fb873a
idba_1.1.3.orig.tar.gz 435.8 KiB 030e24463c6d725c1c202baabf773b605b51e310844fd0f27f4688ecfbae26d0
idba_1.1.3-2.debian.tar.xz 5.6 KiB 1204c832e82ec53388ee453e80b0fecbcc7e916715bc24a89cdd1c3eb595e03d

Available diffs

No changes file available.

Binary packages built by this source

idba: iterative De Bruijn Graph short read assemblers

 IDBA stands for iterative de Bruijn graph assembler. In computational
 sequence biology, an assembler solves the puzzle coming from large
 sequencing machines that feature many gigabytes of short reads from a
 large genome.
 This package provides several flavours of the IDBA assembler, as they all
 share the same source tree but serve different purposes and evolved over time.
 IDBA is the basic iterative de Bruijn graph assembler for
 second-generation sequencing reads. IDBA-UD, an extension of IDBA,
 is designed to utilize paired-end reads to assemble low-depth regions
 and use progressive depth on contigs to reduce errors in high-depth
 regions. It is a generic purpose assembler and especially good for
 single-cell and metagenomic sequencing data. IDBA-Hybrid is another
 update version of IDBA-UD, which can make use of a similar reference
 genome to improve assembly result. IDBA-Tran is an iterative de Bruijn
 graph assembler for RNA-Seq data.

idba-dbgsym: debug symbols for idba