Ubuntu
hyphy package

hyphy 2.5.1+dfsg-1 source package in Ubuntu

Changelog

hyphy (2.5.1+dfsg-1) unstable; urgency=medium

  [ Helmut Grohne ]
  * Add pkg-config to Build-Depends as FindMPI.cmake will need it for cross
    compilation. (Closes: #943311)

  [ Andreas Tille ]
  * New upstream version
  * debhelper-compat 12
  * Secure URI in copyright format
  * Remove trailing whitespace in debian/changelog
  * New upstream version
  * Standards-Version: 4.4.1
  * Use secure URI in Homepage field.
  * Remove patches msse_option_only_if_available.patch that are missing
    from debian/patches/series.
  * Skip GTEST target for the moment since this is currently in flux
    see https://github.com/veg/hyphy/issues/1058
  * No need to rename executables any more since upstream is doing this now
  * Autopkgtest exists since last release - so close bug
    Closes: #909707

 -- Andreas Tille <email address hidden>  Fri, 06 Dec 2019 22:47:47 +0100

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any all
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section

Downloads

File Size SHA-256 Checksum
hyphy_2.5.1+dfsg-1.dsc 2.1 KiB 0257eb0d590134ace1dff5aa1612b5caca094b6bc11c55a523c31e974f0ebc70
hyphy_2.5.1+dfsg.orig.tar.xz 2.8 MiB 1ba52718825b34268f9b8ba2e9425f3450f5466750c2dadebc0238385bba989c
hyphy_2.5.1+dfsg-1.debian.tar.xz 10.1 KiB a8391b2b0acee18ff5650117f5d86bc2e8b1d88c1f685cbc0ffecff72d6dd0f1

No changes file available.

Binary packages built by this source

hyphy-common: Hypothesis testing using Phylogenies (common files)

 HyPhy is an open-source software package for the analysis of genetic
 sequences using techniques in phylogenetics, molecular evolution, and
 machine learning. It features a complete graphical user interface (GUI)
 and a rich scripting language for limitless customization of analyses.
 Additionally, HyPhy features support for parallel computing environments
 (via message passing interface) and it can be compiled as a shared
 library and called from other programming environments such as Python or
 R. Continued development of HyPhy is currently supported in part by an
 NIGMS R01 award 1R01GM093939.
 .
 This package provides files that are common to all binary versions.

hyphy-mpi: Hypothesis testing using Phylogenies (MPI version)

 HyPhy is an open-source software package for the analysis of genetic
 sequences using techniques in phylogenetics, molecular evolution, and
 machine learning. It features a complete graphical user interface (GUI)
 and a rich scripting language for limitless customization of analyses.
 Additionally, HyPhy features support for parallel computing environments
 (via message passing interface) and it can be compiled as a shared
 library and called from other programming environments such as Python or
 R. Continued development of HyPhy is currently supported in part by an
 NIGMS R01 award 1R01GM093939.
 .
 This package provides an executable using MPI to do multiprocessing.

hyphy-mpi-dbgsym: debug symbols for hyphy-mpi
hyphy-pt: Hypothesis testing using Phylogenies (pthreads version)

 HyPhy is an open-source software package for the analysis of genetic
 sequences using techniques in phylogenetics, molecular evolution, and
 machine learning. It features a complete graphical user interface (GUI)
 and a rich scripting language for limitless customization of analyses.
 Additionally, HyPhy features support for parallel computing environments
 (via message passing interface) and it can be compiled as a shared
 library and called from other programming environments such as Python or
 R. Continued development of HyPhy is currently supported in part by an
 NIGMS R01 award 1R01GM093939.
 .
 This package provides an executable using pthreads to do multiprocessing.

hyphy-pt-dbgsym: debug symbols for hyphy-pt