htslib 1.5-3 source package in Ubuntu
Changelog
htslib (1.5-3) unstable; urgency=medium * Team upload [ Diane Trout ] * Restore libhts2.symbols and update for changes from 1.4.1 and 1.5 versions of htslib. (Closes: #879886) [ Graham Inggs ] * Update 877670.patch as it was applied upstream -- Diane Trout <email address hidden> Fri, 10 Nov 2017 12:38:12 +0100
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any all
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
Series | Published | Component | Section |
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Downloads
File | Size | SHA-256 Checksum |
---|---|---|
htslib_1.5-3.dsc | 2.2 KiB | ef499dbf3ce18efda19a15860a5be3a5bf5c8632c8ef19c3776a36090662a6af |
htslib_1.5.orig.tar.gz | 1.1 MiB | 237b16c204e45c1e3a3d8b60eab2102d15b0bba81951ebd3a8a36b723a279ee0 |
htslib_1.5-3.debian.tar.xz | 13.5 KiB | fc34a698d8b504e82477c3aa3a321e8dbcac5aa83ab432975a7bfb9a25ea3bb6 |
Available diffs
- diff from 1.5-2 to 1.5-3 (4.8 KiB)
No changes file available.
Binary packages built by this source
- htslib-test: Test data for HTSlib
HTSlib is an implementation of a unified C library for accessing common file
formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call
Format), used for high-throughput sequencing data, and is the core library
used by samtools and bcftools. HTSlib only depends on zlib. It is known to be
compatible with gcc, g++ and clang.
.
HTSlib implements a generalized BAM (binary SAM) index, with file extension
‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the
new index and then for the old if the new index is absent.
.
This package contains test files and scripts for the HTSlib.
- libhts-dev: development files for the HTSlib
HTSlib is an implementation of a unified C library for accessing common file
formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call
Format), used for high-throughput sequencing data, and is the core library
used by samtools and bcftools. HTSlib only depends on zlib. It is known to be
compatible with gcc, g++ and clang.
.
HTSlib implements a generalized BAM (binary SAM) index, with file extension
‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the
new index and then for the old if the new index is absent.
.
This package contains development files for the HTSlib: headers, static
library, manual pages, etc.
- libhts2: C library for high-throughput sequencing data formats
HTSlib is an implementation of a unified C library for accessing common file
formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call
Format), used for high-throughput sequencing data, and is the core library
used by samtools and bcftools. HTSlib only depends on zlib. It is known to be
compatible with gcc, g++ and clang.
.
HTSlib implements a generalized BAM (binary SAM) index, with file extension
‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the
new index and then for the old if the new index is absent.
- libhts2-dbgsym: debug symbols for libhts2
- tabix: generic indexer for TAB-delimited genome position files
Tabix indexes files where some columns indicate sequence coordinates: name
(usually a chromosome), start and stop. The input data file must be position
sorted and compressed by bgzip (provided in this package), which has a gzip
like interface. After indexing, tabix is able to quickly retrieve data lines by
chromosomal coordinates. Fast data retrieval also works over network if an URI
is given as a file name.
.
This version of tabix is built from the HTSlib source.
- tabix-dbgsym: debug symbols for tabix