Ubuntu
htslib package

htslib 1.2.1-2ubuntu1 source package in Ubuntu

Changelog

htslib (1.2.1-2ubuntu1) xenial; urgency=high

  * Skip test-suites on armhf, powerpc and s390x due to broken endiannes
    and alignment issues. See https://github.com/samtools/htslib/issues/98
    for details. Hopefully upstream will agree on a concept and merge it
    soon.

 -- Dimitri John Ledkov <email address hidden>  Tue, 15 Dec 2015 15:20:11 +0000

Upload details

Uploaded by:
Dimitri John Ledkov
Uploaded to:
Xenial
Original maintainer:
Ubuntu Developers
Architectures:
any all
Section:
misc
Urgency:
Very Urgent

See full publishing history Publishing

Series Pocket Published Component Section
Xenial release universe misc

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File Size SHA-256 Checksum
htslib_1.2.1.orig.tar.gz 974.2 KiB 4f67f0fc73ae86f3ed4336d8d8f6da3c12066e9cb5f142b685622dd6b8f9ae42
htslib_1.2.1-2ubuntu1.debian.tar.xz 8.8 KiB 174c4ba007c1f951b694c563c22cfa8dfa835db351b2260eaa5cab35aef03c04
htslib_1.2.1-2ubuntu1.dsc 1.8 KiB 827b442661a16e50006b2e130991ac1508d4adf2a9be5fe502cd6116308c3e68

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Binary packages built by this source

htslib-test: No summary available for htslib-test in ubuntu yakkety.

No description available for htslib-test in ubuntu yakkety.

libhts-dev: No summary available for libhts-dev in ubuntu yakkety.

No description available for libhts-dev in ubuntu yakkety.

libhts1: C library for high-throughput sequencing data formats

 HTSlib is an implementation of a unified C library for accessing common file
 formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call
 Format), used for high-throughput sequencing data, and is the core library
 used by samtools and bcftools. HTSlib only depends on zlib. It is known to be
 compatible with gcc, g++ and clang.
 .
 HTSlib implements a generalized BAM (binary SAM) index, with file extension
 ‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the
 new index and then for the old if the new index is absent.

libhts1-dbgsym: No summary available for libhts1-dbgsym in ubuntu yakkety.

No description available for libhts1-dbgsym in ubuntu yakkety.

tabix: generic indexer for TAB-delimited genome position files

 Tabix indexes files where some columns indicate sequence coordinates: name
 (usually a chromosome), start and stop. The input data file must be position
 sorted and compressed by bgzip (provided in this package), which has a gzip
 like interface. After indexing, tabix is able to quickly retrieve data lines by
 chromosomal coordinates. Fast data retrieval also works over network if an URI
 is given as a file name.
 .
 This version of tabix is built from the HTSlib source.

tabix-dbgsym: debug symbols for package tabix

 Tabix indexes files where some columns indicate sequence coordinates: name
 (usually a chromosome), start and stop. The input data file must be position
 sorted and compressed by bgzip (provided in this package), which has a gzip
 like interface. After indexing, tabix is able to quickly retrieve data lines by
 chromosomal coordinates. Fast data retrieval also works over network if an URI
 is given as a file name.
 .
 This version of tabix is built from the HTSlib source.