htslib 1.19+ds-1.1build3 source package in Ubuntu
Changelog
htslib (1.19+ds-1.1build3) noble; urgency=medium * No-change rebuild for CVE-2024-3094 -- Steve Langasek <email address hidden> Sun, 31 Mar 2024 18:25:58 +0000
Upload details
- Uploaded by:
- Steve Langasek
- Uploaded to:
- Noble
- Original maintainer:
- Ubuntu Developers
- Architectures:
- any all
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section | |
|---|---|---|---|---|
| Oracular | release | universe | misc | |
| Noble | release | universe | misc |
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| htslib_1.19+ds.orig.tar.bz2 | 1.5 MiB | e740e5a68db806a4c8252009348da5f0cc1bcdd134f702e4e1cce724e855f777 |
| htslib_1.19+ds-1.1build3.debian.tar.xz | 20.9 KiB | 37ebea6ed0e05d77181265ace97b1ee646127a6ef613a33faa1d3b8f50295d27 |
| htslib_1.19+ds-1.1build3.dsc | 2.5 KiB | 943d9fb0e1b692136884ec4b7bca8730f3eb4d7d8e52114811ae88340d171747 |
Available diffs
- diff from 1.19+ds-1.1build2 to 1.19+ds-1.1build3 (319 bytes)
Binary packages built by this source
- htslib-test: Test data for HTSlib
HTSlib is an implementation of a unified C library for accessing common file
formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call
Format), used for high-throughput sequencing data, and is the core library
used by samtools and bcftools. HTSlib only depends on zlib. It is known to be
compatible with gcc, g++ and clang.
.
HTSlib implements a generalized BAM (binary SAM) index, with file extension
‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the
new index and then for the old if the new index is absent.
.
This package contains test files and scripts for the HTSlib.
- libhts-dev: development files for the HTSlib
HTSlib is an implementation of a unified C library for accessing common file
formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call
Format), used for high-throughput sequencing data, and is the core library
used by samtools and bcftools. HTSlib only depends on zlib. It is known to be
compatible with gcc, g++ and clang.
.
HTSlib implements a generalized BAM (binary SAM) index, with file extension
‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the
new index and then for the old if the new index is absent.
.
This package contains development files for the HTSlib: headers, static
library, manual pages, etc.
.
For compatibility with sambamba, the internal routine cram_to_bam was
exported, hereto adopting a patch found in guix.
- libhts3t64: C library for high-throughput sequencing data formats
HTSlib is an implementation of a unified C library for accessing common file
formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call
Format), used for high-throughput sequencing data, and is the core library
used by samtools and bcftools. HTSlib only depends on zlib. It is known to be
compatible with gcc, g++ and clang.
.
HTSlib implements a generalized BAM (binary SAM) index, with file extension
‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the
new index and then for the old if the new index is absent.
- libhts3t64-dbgsym: debug symbols for libhts3t64
- tabix: generic indexer for TAB-delimited genome position files
Tabix indexes files where some columns indicate sequence coordinates: name
(usually a chromosome), start and stop. The input data file must be position
sorted and compressed by bgzip (provided in this package), which has a gzip
like interface. After indexing, tabix is able to quickly retrieve data lines by
chromosomal coordinates. Fast data retrieval also works over network if an URI
is given as a file name.
.
This package is built from the HTSlib source, and provides the bgzip, htsfile,
and tabix tools.
- tabix-dbgsym: debug symbols for tabix
