htslib 1.17+ds-1 source package in Ubuntu
Changelog
htslib (1.17+ds-1) unstable; urgency=medium * Migrate htslib to unstable. * d/control: declare libhts3 breaks samtools < 1.17. -- Étienne Mollier <email address hidden> Thu, 22 Jun 2023 22:21:42 +0200
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any all
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section | |
|---|---|---|---|---|
| Mantic | release | universe | misc |
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| htslib_1.17+ds-1.dsc | 2.4 KiB | 69ba98f1dc9345534e630b3649fac9d465c94159365b227b66cad203d4f77446 |
| htslib_1.17+ds.orig.tar.bz2 | 1.3 MiB | c311f509959d83eec02124e190f52378ecce6ebeb4e31fed9bb5859a263130ea |
| htslib_1.17+ds-1.debian.tar.xz | 19.8 KiB | 956f59030b75c008c54689968900c45b7567207c67fd4fda725fed88267d1835 |
Available diffs
- diff from 1.16+ds-3 to 1.17+ds-1 (81.6 KiB)
No changes file available.
Binary packages built by this source
- htslib-test: Test data for HTSlib
HTSlib is an implementation of a unified C library for accessing common file
formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call
Format), used for high-throughput sequencing data, and is the core library
used by samtools and bcftools. HTSlib only depends on zlib. It is known to be
compatible with gcc, g++ and clang.
.
HTSlib implements a generalized BAM (binary SAM) index, with file extension
‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the
new index and then for the old if the new index is absent.
.
This package contains test files and scripts for the HTSlib.
- libhts-dev: development files for the HTSlib
HTSlib is an implementation of a unified C library for accessing common file
formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call
Format), used for high-throughput sequencing data, and is the core library
used by samtools and bcftools. HTSlib only depends on zlib. It is known to be
compatible with gcc, g++ and clang.
.
HTSlib implements a generalized BAM (binary SAM) index, with file extension
‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the
new index and then for the old if the new index is absent.
.
This package contains development files for the HTSlib: headers, static
library, manual pages, etc.
.
For compatibility with sambamba, the internal routine cram_to_bam was
exported, hereto adopting a patch found in guix.
- libhts3: No summary available for libhts3 in ubuntu noble.
No description available for libhts3 in ubuntu noble.
- libhts3-dbgsym: No summary available for libhts3-dbgsym in ubuntu noble.
No description available for libhts3-dbgsym in ubuntu noble.
- tabix: generic indexer for TAB-delimited genome position files
Tabix indexes files where some columns indicate sequence coordinates: name
(usually a chromosome), start and stop. The input data file must be position
sorted and compressed by bgzip (provided in this package), which has a gzip
like interface. After indexing, tabix is able to quickly retrieve data lines by
chromosomal coordinates. Fast data retrieval also works over network if an URI
is given as a file name.
.
This package is built from the HTSlib source, and provides the bgzip, htsfile,
and tabix tools.
- tabix-dbgsym: debug symbols for tabix
