Ubuntu
htslib package

htslib 1.16+ds-3 source package in Ubuntu

Changelog

htslib (1.16+ds-3) unstable; urgency=medium

  * d/rules: make sure libdir and plugindir are defined.
    Thanks to James Bonfield
  * d/libhts3.install: relocate plugins following fix at configure step.
  * d/*.install: remove dh-exec shebang.
  * d/control: remove build-dependency to dh-exec.
  * disable_plugin_loading_test.patch: remove; test is supposed to pass.
  * d/rules: do not erase LDFLAGS; fix the aforementioned test failure
    by restoring -rdynamic flag supposed to be passed to the linker.
  * d/patches/: remove unused patches.
  * trim-file-prefix.patch: add; improve reproducible build.

 -- Étienne Mollier <email address hidden>  Wed, 19 Oct 2022 22:25:57 +0200

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any all
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Lunar release universe misc

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File Size SHA-256 Checksum
htslib_1.16+ds-3.dsc 2.4 KiB 91acf7137a073065532b9bd4a70a3afb0f09231bd7a26da5c40d917865292401
htslib_1.16+ds.orig.tar.bz2 1.3 MiB 2d10941e47cf0c05d1496e73e2beaef39e7584eb326367476b12cad04e7794be
htslib_1.16+ds-3.debian.tar.xz 18.7 KiB 17d754a414fd73eb807b556031f00c9c4bf184232309601ada4335b0d866e784

No changes file available.

Binary packages built by this source

htslib-test: Test data for HTSlib

 HTSlib is an implementation of a unified C library for accessing common file
 formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call
 Format), used for high-throughput sequencing data, and is the core library
 used by samtools and bcftools. HTSlib only depends on zlib. It is known to be
 compatible with gcc, g++ and clang.
 .
 HTSlib implements a generalized BAM (binary SAM) index, with file extension
 ‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the
 new index and then for the old if the new index is absent.
 .
 This package contains test files and scripts for the HTSlib.

libhts-dev: development files for the HTSlib

 HTSlib is an implementation of a unified C library for accessing common file
 formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call
 Format), used for high-throughput sequencing data, and is the core library
 used by samtools and bcftools. HTSlib only depends on zlib. It is known to be
 compatible with gcc, g++ and clang.
 .
 HTSlib implements a generalized BAM (binary SAM) index, with file extension
 ‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the
 new index and then for the old if the new index is absent.
 .
 This package contains development files for the HTSlib: headers, static
 library, manual pages, etc.
 .
 For compatibility with sambamba, the internal routine cram_to_bam was
 exported, hereto adopting a patch found in guix.

libhts3: C library for high-throughput sequencing data formats

 HTSlib is an implementation of a unified C library for accessing common file
 formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call
 Format), used for high-throughput sequencing data, and is the core library
 used by samtools and bcftools. HTSlib only depends on zlib. It is known to be
 compatible with gcc, g++ and clang.
 .
 HTSlib implements a generalized BAM (binary SAM) index, with file extension
 ‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the
 new index and then for the old if the new index is absent.

libhts3-dbgsym: debug symbols for libhts3
tabix: generic indexer for TAB-delimited genome position files

 Tabix indexes files where some columns indicate sequence coordinates: name
 (usually a chromosome), start and stop. The input data file must be position
 sorted and compressed by bgzip (provided in this package), which has a gzip
 like interface. After indexing, tabix is able to quickly retrieve data lines by
 chromosomal coordinates. Fast data retrieval also works over network if an URI
 is given as a file name.
 .
 This package is built from the HTSlib source, and provides the bgzip, htsfile,
 and tabix tools.

tabix-dbgsym: debug symbols for tabix