htslib 1.10.2-2ubuntu1 source package in Ubuntu
Changelog
htslib (1.10.2-2ubuntu1) focal; urgency=medium * Don't build for s390x anymore. -- Matthias Klose <email address hidden> Fri, 31 Jan 2020 20:35:33 +0100
Upload details
- Uploaded by:
- Matthias Klose
- Uploaded to:
- Focal
- Original maintainer:
- Debian Med
- Architectures:
- amd64 arm64 armhf i386 ppc64el all
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
Series | Published | Component | Section |
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Downloads
File | Size | SHA-256 Checksum |
---|---|---|
htslib_1.10.2.orig.tar.bz2 | 1.2 MiB | e3b543de2f71723830a1e0472cf5489ec27d0fbeb46b1103e14a11b7177d1939 |
htslib_1.10.2-2ubuntu1.debian.tar.xz | 15.0 KiB | 7a4015c06dd84f0952526fbca769de32fdd54ed98075be1515c3270336f5dd7e |
htslib_1.10.2-2ubuntu1.dsc | 2.4 KiB | 2318a816fc851a9acfc8b8502ea36387231128b8cb02f0594bb477bef6361fc5 |
Available diffs
- diff from 1.9-12 (in Debian) to 1.10.2-2ubuntu1 (432.7 KiB)
- diff from 1.10.2-2 (in Debian) to 1.10.2-2ubuntu1 (649 bytes)
Binary packages built by this source
- htslib-test: Test data for HTSlib
HTSlib is an implementation of a unified C library for accessing common file
formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call
Format), used for high-throughput sequencing data, and is the core library
used by samtools and bcftools. HTSlib only depends on zlib. It is known to be
compatible with gcc, g++ and clang.
.
HTSlib implements a generalized BAM (binary SAM) index, with file extension
‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the
new index and then for the old if the new index is absent.
.
This package contains test files and scripts for the HTSlib.
- libhts-dev: development files for the HTSlib
HTSlib is an implementation of a unified C library for accessing common file
formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call
Format), used for high-throughput sequencing data, and is the core library
used by samtools and bcftools. HTSlib only depends on zlib. It is known to be
compatible with gcc, g++ and clang.
.
HTSlib implements a generalized BAM (binary SAM) index, with file extension
‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the
new index and then for the old if the new index is absent.
.
This package contains development files for the HTSlib: headers, static
library, manual pages, etc.
- libhts3: C library for high-throughput sequencing data formats
HTSlib is an implementation of a unified C library for accessing common file
formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call
Format), used for high-throughput sequencing data, and is the core library
used by samtools and bcftools. HTSlib only depends on zlib. It is known to be
compatible with gcc, g++ and clang.
.
HTSlib implements a generalized BAM (binary SAM) index, with file extension
‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the
new index and then for the old if the new index is absent.
- libhts3-dbgsym: debug symbols for libhts3
- tabix: generic indexer for TAB-delimited genome position files
Tabix indexes files where some columns indicate sequence coordinates: name
(usually a chromosome), start and stop. The input data file must be position
sorted and compressed by bgzip (provided in this package), which has a gzip
like interface. After indexing, tabix is able to quickly retrieve data lines by
chromosomal coordinates. Fast data retrieval also works over network if an URI
is given as a file name.
.
This version of tabix is built from the HTSlib source.
- tabix-dbgsym: debug symbols for tabix