htslib 1.10-1 source package in Ubuntu
Changelog
htslib (1.10-1) unstable; urgency=medium * New upstream release. * Remove build path from packaged config.mk to make the build more reproducible. -- Michael R. Crusoe <email address hidden> Mon, 09 Dec 2019 19:40:15 +0100
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any all
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
Series | Published | Component | Section |
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Downloads
File | Size | SHA-256 Checksum |
---|---|---|
htslib_1.10-1.dsc | 2.3 KiB | f1f5ed6060764834192adb81b689caf2e9aca54369f2d8e3e17dd2ade25b818d |
htslib_1.10.orig.tar.bz2 | 1.2 MiB | 7ae44dd9faeb4c4293e9bb4815164ac28c6c6fae81fed4791df2fa878f57a972 |
htslib_1.10-1.debian.tar.xz | 14.6 KiB | 40b2daf53279a8430483377827e9520532c2e2194c0edf88f729a85c0f6c6f93 |
Available diffs
- diff from 1.9-12 to 1.10-1 (421.1 KiB)
No changes file available.
Binary packages built by this source
- htslib-test: Test data for HTSlib
HTSlib is an implementation of a unified C library for accessing common file
formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call
Format), used for high-throughput sequencing data, and is the core library
used by samtools and bcftools. HTSlib only depends on zlib. It is known to be
compatible with gcc, g++ and clang.
.
HTSlib implements a generalized BAM (binary SAM) index, with file extension
‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the
new index and then for the old if the new index is absent.
.
This package contains test files and scripts for the HTSlib.
- libhts-dev: development files for the HTSlib
HTSlib is an implementation of a unified C library for accessing common file
formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call
Format), used for high-throughput sequencing data, and is the core library
used by samtools and bcftools. HTSlib only depends on zlib. It is known to be
compatible with gcc, g++ and clang.
.
HTSlib implements a generalized BAM (binary SAM) index, with file extension
‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the
new index and then for the old if the new index is absent.
.
This package contains development files for the HTSlib: headers, static
library, manual pages, etc.
- libhts-private-dev: No summary available for libhts-private-dev in ubuntu focal.
No description available for libhts-private-dev in ubuntu focal.
- libhts2: No summary available for libhts2 in ubuntu focal.
No description available for libhts2 in ubuntu focal.
- libhts2-dbgsym: No summary available for libhts2-dbgsym in ubuntu focal.
No description available for libhts2-dbgsym in ubuntu focal.
- tabix: generic indexer for TAB-delimited genome position files
Tabix indexes files where some columns indicate sequence coordinates: name
(usually a chromosome), start and stop. The input data file must be position
sorted and compressed by bgzip (provided in this package), which has a gzip
like interface. After indexing, tabix is able to quickly retrieve data lines by
chromosomal coordinates. Fast data retrieval also works over network if an URI
is given as a file name.
.
This version of tabix is built from the HTSlib source.
- tabix-dbgsym: debug symbols for tabix