hisat2 2.2.1-3 source package in Ubuntu

Changelog

hisat2 (2.2.1-3) unstable; urgency=medium

  * Team upload.
  * Fix watchfile to detect new versions on github (routine-update)
  * Standards-Version: 4.6.0 (routine-update)
  * Fix debian/source/lintian-overrides

 -- Andreas Tille <email address hidden>  Tue, 28 Sep 2021 10:35:43 +0200

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any all
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Jammy release universe misc

Downloads

File Size SHA-256 Checksum
hisat2_2.2.1-3.dsc 2.1 KiB 644a49716e75a5395db197328ef0971f65508302b6e403fe1b2a7d554450b567
hisat2_2.2.1.orig.tar.gz 6.4 MiB f3f4f867d0a6b1f880d64efc19deaa5788c62050e0a4d614ce98b3492f702599
hisat2_2.2.1-3.debian.tar.xz 28.3 KiB 5efee24872fdea71d3b22568bb400971c8c00180148375c87547119763a48528

Available diffs

No changes file available.

Binary packages built by this source

hisat2: graph-based alignment of short nucleotide reads to many genomes

 HISAT2 is a fast and sensitive alignment program for mapping next-generation
 sequencing reads (both DNA and RNA) to a population of human genomes (as well
 as against a single reference genome). Based on an extension of BWT for graphs
 a graph FM index (GFM) was designed and implementd. In addition to using
 one global GFM index that represents a population of human genomes, HISAT2
 uses a large set of small GFM indexes that collectively cover the whole genome
 (each index representing a genomic region of 56 Kbp, with 55,000 indexes
 needed to cover the human population). These small indexes (called local
 indexes), combined with several alignment strategies, enable rapid and
 accurate alignment of sequencing reads. This new indexing scheme is called a
 Hierarchical Graph FM index (HGFM).

hisat2-dbgsym: debug symbols for hisat2
python3-hisat2: Python scripts accompanying hisat2

 HISAT2 is a fast and sensitive alignment program for mapping next-
 generation sequencing reads (both DNA and RNA) to a population of human
 genomes (as well as against a single reference genome). Based on an
 extension of BWT for graphs a graph FM index (GFM) was designed and
 implementd. In addition to using one global GFM index that represents a
 population of human genomes, HISAT2 uses a large set of small GFM
 indexes that collectively cover the whole genome (each index
 representing a genomic region of 56 Kbp, with 55,000 indexes needed to
 cover the human population). These small indexes (called local indexes),
 combined with several alignment strategies, enable rapid and accurate
 alignment of sequencing reads. This new indexing scheme is called a
 Hierarchical Graph FM index (HGFM).
 .
 This package provides a serires of platform-independent scripts that are
 typically expected to be co-installed with the hisat2 binary.