hisat2 2.2.1-3 source package in Ubuntu
Changelog
hisat2 (2.2.1-3) unstable; urgency=medium * Team upload. * Fix watchfile to detect new versions on github (routine-update) * Standards-Version: 4.6.0 (routine-update) * Fix debian/source/lintian-overrides -- Andreas Tille <email address hidden> Tue, 28 Sep 2021 10:35:43 +0200
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any all
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
Series | Published | Component | Section | |
---|---|---|---|---|
Jammy | release | universe | misc |
Downloads
File | Size | SHA-256 Checksum |
---|---|---|
hisat2_2.2.1-3.dsc | 2.1 KiB | 644a49716e75a5395db197328ef0971f65508302b6e403fe1b2a7d554450b567 |
hisat2_2.2.1.orig.tar.gz | 6.4 MiB | f3f4f867d0a6b1f880d64efc19deaa5788c62050e0a4d614ce98b3492f702599 |
hisat2_2.2.1-3.debian.tar.xz | 28.3 KiB | 5efee24872fdea71d3b22568bb400971c8c00180148375c87547119763a48528 |
Available diffs
- diff from 2.2.1-2 to 2.2.1-3 (810 bytes)
No changes file available.
Binary packages built by this source
- hisat2: graph-based alignment of short nucleotide reads to many genomes
HISAT2 is a fast and sensitive alignment program for mapping next-generation
sequencing reads (both DNA and RNA) to a population of human genomes (as well
as against a single reference genome). Based on an extension of BWT for graphs
a graph FM index (GFM) was designed and implementd. In addition to using
one global GFM index that represents a population of human genomes, HISAT2
uses a large set of small GFM indexes that collectively cover the whole genome
(each index representing a genomic region of 56 Kbp, with 55,000 indexes
needed to cover the human population). These small indexes (called local
indexes), combined with several alignment strategies, enable rapid and
accurate alignment of sequencing reads. This new indexing scheme is called a
Hierarchical Graph FM index (HGFM).
- hisat2-dbgsym: No summary available for hisat2-dbgsym in ubuntu kinetic.
No description available for hisat2-dbgsym in ubuntu kinetic.
- python3-hisat2: No summary available for python3-hisat2 in ubuntu kinetic.
No description available for python3-hisat2 in ubuntu kinetic.