Ubuntu
hhsuite package

hhsuite 3.2.0-2build1 source package in Ubuntu

Changelog

hhsuite (3.2.0-2build1) focal; urgency=medium

  * No-change rebuild for libgcc-s1 package name change.

 -- Matthias Klose <email address hidden>  Mon, 23 Mar 2020 07:16:06 +0100

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Uploaded by:
Matthias Klose
Uploaded to:
Focal
Original maintainer:
Debian Med
Architectures:
amd64 all
Section:
science
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Focal release universe science

Builds

Focal: [FULLYBUILT] amd64

Downloads

File Size SHA-256 Checksum
hhsuite_3.2.0.orig.tar.xz 4.5 MiB 9d47113afe6ba46d98623e6026e0160b621c1de831d26c436ec70850f1cc9285
hhsuite_3.2.0-2build1.debian.tar.xz 9.8 KiB 7b41f1e3faae42d522367aa1222618a25131d835bf3434c091e3a5440ab2cfde
hhsuite_3.2.0-2build1.dsc 2.1 KiB d18d8c0bb0a4b273efcda7262a6b425327530072a46b5232cf8e13450848d5fb

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Binary packages built by this source

hhsuite: sensitive protein sequence searching based on HMM-HMM alignment

 HH-suite is an open-source software package for sensitive protein sequence
 searching based on the pairwise alignment of hidden Markov models (HMMs).
 .
 This package contains HHsearch and HHblits among other programs and utilities.
 .
 HHsearch takes as input a multiple sequence alignment (MSA) or profile HMM
 and searches a database of HMMs (e.g. PDB, Pfam, or InterPro) for homologous
 proteins. HHsearch is often used for protein structure prediction to detect
 homologous templates and to build highly accurate query-template pairwise
 alignments for homology modeling.
 .
 HHblits can build high-quality MSAs starting from single sequences or from
 MSAs. It transforms these into a query HMM and, using an iterative search
 strategy, adds significantly similar sequences from the previous search to
 the updated query HMM for the next search iteration. Compared to PSI-BLAST,
 HHblits is faster, up to twice as sensitive and produces more accurate
 alignments.

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