hhsuite 2.0.16-6 source package in Ubuntu
Changelog
hhsuite (2.0.16-6) unstable; urgency=medium
* Versioned Build-Depends ffindex0-dev (>= 0.9.9.6-2)
Closes: #802076
-- Andreas Tille <email address hidden> Sun, 18 Oct 2015 07:53:08 +0200
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- amd64 all
- Section:
- science
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section | |
|---|---|---|---|---|
| Xenial | release | universe | science |
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| hhsuite_2.0.16-6.dsc | 2.2 KiB | fbdbf151490a89643c3dd24dcbd62e0a3ae7893927eb9166a2b96cf5d36c101d |
| hhsuite_2.0.16.orig.tar.gz | 4.1 MiB | 027789cb40e4cf9c1bc48f4c825a85da313bcefcc1c49e5f143613533fc5f0ab |
| hhsuite_2.0.16-6.debian.tar.xz | 9.8 KiB | b9381c81162291a90d08fab216fa5d8677a65e7c8e7e92b1bf74bf70f71cf171 |
Available diffs
- diff from 2.0.16-5 to 2.0.16-6 (522 bytes)
No changes file available.
Binary packages built by this source
- hhsuite: sensitive protein sequence searching based on HMM-HMM alignment
HH-suite is an open-source software package for sensitive protein sequence
searching based on the pairwise alignment of hidden Markov models (HMMs).
.
This package contains HHsearch and HHblits among other programs and utilities.
.
HHsearch takes as input a multiple sequence alignment (MSA) or profile HMM
and searches a database of HMMs (e.g. PDB, Pfam, or InterPro) for homologous
proteins. HHsearch is often used for protein structure prediction to detect
homologous templates and to build highly accurate query-template pairwise
alignments for homology modeling.
.
HHblits can build high-quality MSAs starting from single sequences or from
MSAs. It transforms these into a query HMM and, using an iterative search
strategy, adds significantly similar sequences from the previous search to
the updated query HMM for the next search iteration. Compared to PSI-BLAST,
HHblits is faster, up to twice as sensitive and produces more accurate
alignments.
- hhsuite-data: sensitive protein sequence searching based on HMM-HMM alignment (data)
HH-suite is an open-source software package for sensitive protein sequence
searching based on the pairwise alignment of hidden Markov models (HMMs).
.
This package contains architecture independent scripts and data files.
- hhsuite-dbg: sensitive protein sequence searching based on HMM-HMM alignment (debug)
HH-suite is an open-source software package for sensitive protein sequence
searching based on the pairwise alignment of hidden Markov models (HMMs).
.
This package contains the debugging symbols.
- hhsuite-dbgsym: debug symbols for package hhsuite
HH-suite is an open-source software package for sensitive protein sequence
searching based on the pairwise alignment of hidden Markov models (HMMs).
.
This package contains HHsearch and HHblits among other programs and utilities.
.
HHsearch takes as input a multiple sequence alignment (MSA) or profile HMM
and searches a database of HMMs (e.g. PDB, Pfam, or InterPro) for homologous
proteins. HHsearch is often used for protein structure prediction to detect
homologous templates and to build highly accurate query-template pairwise
alignments for homology modeling.
.
HHblits can build high-quality MSAs starting from single sequences or from
MSAs. It transforms these into a query HMM and, using an iterative search
strategy, adds significantly similar sequences from the previous search to
the updated query HMM for the next search iteration. Compared to PSI-BLAST,
HHblits is faster, up to twice as sensitive and produces more accurate
alignments.
- hhsuite-doc: documentation for HHsuite for HMM-HMM comparisons
HH-suite is an open-source software package for sensitive protein sequence
searching based on the pairwise alignment of hidden Markov models (HMMs).
.
This package provides a PDF with the user guide for HH-suite.
