Ubuntu
gubbins package

gubbins 3.3.5-1 source package in Ubuntu

Changelog

gubbins (3.3.5-1) unstable; urgency=medium

  * New upstream version 3.3.5
  * iqtree2.patch: unfuzz.
  * python3-shebang.patch: new.
    This fixes a couple of occurrences of unversioned Python interpreter
    declared in the shebang of a couple of scripts.
  * d/control: move to pkgconf.
  * remove-numba-temporarily.patch: new.
    Remove temporarily numba-accelerated pyjar.py functions decorators.
    This allows decorellation of gubbins from numba until the latter is
    available again in trixie.  The change may affect performances, but
    should not affect gubbins results and functionalities otherwise.
  * d/control: promote and comment out dependency on python3-numba.
    This prepares the field for when it will be possible to bring numba
    support back to gubbins, once numba 0.59 or later makes it to trixie.
  * d/t/control: autopkgtests do not depend on python3-numba anymore.
    (Closes: #1058474)

 -- Étienne Mollier <email address hidden>  Wed, 22 May 2024 22:19:47 +0200

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Oracular release universe misc

Downloads

File Size SHA-256 Checksum
gubbins_3.3.5-1.dsc 2.4 KiB 36a5b0e4e8fea374aea12481cac2c13792aef8b81a17654baab4158e98112ba8
gubbins_3.3.5.orig.tar.gz 2.7 MiB 4ee363f82708bdda0c00d1c6c334cf20127bd852ee488619f61140771a279774
gubbins_3.3.5-1.debian.tar.xz 9.3 KiB bbddd5af4f016a1a091446637b3296a411ff47f6dc32293d350e5759912d8514

Available diffs

No changes file available.

Binary packages built by this source

gubbins: phylogenetic analysis of genome sequences

 Gubbins supports rapid phylogenetic analysis of large samples of
 recombinant bacterial whole genome sequences.
 .
 Gubbins (Genealogies Unbiased By recomBinations In Nucleotide
 Sequences) is an algorithm that iteratively identifies loci containing
 elevated densities of base substitutions while concurrently constructing
 a phylogeny based on the putative point mutations outside of these
 regions. Simulations demonstrate the algorithm generates highly accurate
 reconstructions under realistic models of short-term bacterial
 evolution, and can be run in only a few hours on alignments of hundreds
 of bacterial genome sequences.

gubbins-dbgsym: debug symbols for gubbins