package gridengine-master 8.1.9+dfsg-7build1 failed to install/upgrade: installed gridengine-master package post-installation script subprocess returned error exit status 139
Affects | Status | Importance | Assigned to | Milestone | |
---|---|---|---|---|---|
| gridengine (Ubuntu) |
Undecided
|
Unassigned |
Bug Description
This happened at 99% installing the debian sience distributed computing packages with:
sudo tasksel install science-
ProblemType: Package
DistroRelease: Ubuntu 18.04
Package: gridengine-master 8.1.9+dfsg-7build1
ProcVersionSign
Uname: Linux 4.15.0-22-generic x86_64
ApportVersion: 2.20.9-0ubuntu7.1
Architecture: amd64
Date: Wed May 30 20:50:23 2018
ErrorMessage: installed gridengine-master package post-installation script subprocess returned error exit status 139
InstallationDate: Installed on 2018-04-27 (33 days ago)
InstallationMedia: Ubuntu-MATE 18.04 LTS "Bionic Beaver" - Release amd64 (20180426)
Python3Details: /usr/bin/python3.6, Python 3.6.5, python3-minimal, 3.6.5-3
PythonDetails: /usr/bin/python2.7, Python 2.7.15rc1, python-minimal, 2.7.15~rc1-1
RelatedPackageV
dpkg 1.19.0.5ubuntu2
apt 1.6.1
SourcePackage: gridengine
Title: package gridengine-master 8.1.9+dfsg-7build1 failed to install/upgrade: installed gridengine-master package post-installation script subprocess returned error exit status 139
UpgradeStatus: No upgrade log present (probably fresh install)
AlexisDelosSantos (alexisds-n) wrote : | #1 |
tags: | removed: need-duplicate-check |
Lennart Karssen (l.c.karssen) wrote : | #3 |
It looks like this bug has been present since Ubuntu 16.10: see bug #1633251
Jody Simpson (jksimpson) wrote : | #4 |
I was able to cobble together a fix for this, hopefully someone could use this information to create a more refined solution.
The underlying issue is that /usr/lib/
After this, gridengine-master will try to start and report:
error opening shared lib "/usr/lib/
This can be resolved by compiling jemalloc with --disable-
Christoph Probst (christophprobst) wrote : | #5 |
Can confirm that using spooldefaults.bin, libspoolb.so and libspoolc.so from http://
Make sure to reset /var/spool/
Regarding libjemalloc it was sufficiant to symlink version 2 to version 1.
cd /usr/lib/
ln -s libjemalloc.so.1 libjemalloc.so.2
I also used the Debian source for 8.1.9+dfsg-9 to build the package locally on Bionic but the result still segfaulted. Possibly lib-related - haven't tried to provide libm and libjemalloc2.
debian dfsg-9 ldd diff:
libm.so.6 => /lib/x86_
local build dfsg-9 ldd diff:
Callum Lewis-Smith (picoutput.cls) wrote : | #6 |
I have been grappling with this issue myself over the last couple of weeks and can confirm using the spooldefaults.bin, libspooldb.so and libspoolc.so from the Debian gridengine-client APT package, linked by christophprobst resolved the issue.
However, I have also been able to compile and install the gridengine client from the Debian source tarball for 8.1.9+dfsg-9 and haven't encountered any segfaults.
Status changed to 'Confirmed' because the bug affects multiple users.