RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux bos01-arm64-017 4.4.0-97-generic #120-Ubuntu SMP Tue Sep 19 17:31:48 UTC 2017 aarch64 Buildd toolchain package versions: launchpad-buildd_154 python-lpbuildd_154 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.3 dpkg-dev_1.18.4ubuntu1.2 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 1 Nov 16:49:13 ntpdate[1790]: adjust time server 10.211.37.1 offset -0.013404 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=bionic --arch=arm64 PACKAGEBUILD-13655223 /home/buildd/filecache-default/78cf3583c71e53d2c7312b9d7596a64d82c6adad Creating target for build PACKAGEBUILD-13655223 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=bionic --arch=arm64 PACKAGEBUILD-13655223 Starting target for build PACKAGEBUILD-13655223 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=bionic --arch=arm64 PACKAGEBUILD-13655223 'deb http://ftpmaster.internal/ubuntu bionic main universe' 'deb http://ftpmaster.internal/ubuntu bionic-security main universe' 'deb http://ftpmaster.internal/ubuntu bionic-updates main universe' 'deb http://ftpmaster.internal/ubuntu bionic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-13655223 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=bionic --arch=arm64 PACKAGEBUILD-13655223 Updating target for build PACKAGEBUILD-13655223 Get:1 http://ftpmaster.internal/ubuntu bionic InRelease [235 kB] Get:2 http://ftpmaster.internal/ubuntu bionic-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu bionic-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu bionic-proposed InRelease [85.4 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main arm64 Packages [1026 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main Translation-en [541 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/universe arm64 Packages [7900 kB] Get:8 http://ftpmaster.internal/ubuntu bionic/universe Translation-en [4790 kB] Get:9 http://ftpmaster.internal/ubuntu bionic-proposed/main arm64 Packages [99.9 kB] Get:10 http://ftpmaster.internal/ubuntu bionic-proposed/main Translation-en [57.4 kB] Get:11 http://ftpmaster.internal/ubuntu bionic-proposed/universe arm64 Packages [164 kB] Get:12 http://ftpmaster.internal/ubuntu bionic-proposed/universe Translation-en [224 kB] Fetched 15.3 MB in 5s (3011 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libasn1-8-heimdal libcurl3-gnutls libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libidn2-0 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libpsl5 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libunistring0 libwind0-heimdal Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: apt-transport-https* The following NEW packages will be installed: liblsan0 libtsan0 The following packages will be upgraded: apt base-files base-passwd binutils binutils-aarch64-linux-gnu binutils-common build-essential coreutils cpp-7 debconf dpkg dpkg-dev e2fslibs e2fsprogs g++-7 gcc-7 gcc-7-base gnupg gnupg-agent gpgv libapt-pkg5.0 libasan4 libatomic1 libbinutils libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcomerr2 libcurl3-gnutls libdpkg-perl libgcc-7-dev libgcc1 libgcrypt20 libgmp10 libgomp1 libgpg-error0 libgssapi-krb5-2 libhogweed4 libitm1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libnettle6 libp11-kit0 libpcre3 libperl5.26 libpng16-16 libpsl5 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsqlite3-0 libss2 libstdc++-7-dev libstdc++6 libsystemd0 libubsan0 libudev1 linux-libc-dev multiarch-support perl perl-base perl-modules-5.26 pinentry-curses systemd systemd-sysv tzdata 73 upgraded, 2 newly installed, 1 to remove and 0 not upgraded. Need to get 49.3 MB of archives. After this operation, 5130 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu bionic/main arm64 base-files arm64 10ubuntu1 [55.9 kB] Get:2 http://ftpmaster.internal/ubuntu bionic/main arm64 coreutils arm64 8.26-3ubuntu4 [1059 kB] Get:3 http://ftpmaster.internal/ubuntu bionic/main arm64 dpkg arm64 1.19.0.4ubuntu1 [1100 kB] Get:4 http://ftpmaster.internal/ubuntu bionic/main arm64 libc6-dev arm64 2.26-0ubuntu2 [2013 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main arm64 libc-dev-bin arm64 2.26-0ubuntu2 [59.1 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main arm64 linux-libc-dev arm64 4.13.0-16.19 [930 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/main arm64 libgomp1 arm64 7.2.0-12ubuntu1 [62.0 kB] Get:8 http://ftpmaster.internal/ubuntu bionic/main arm64 libitm1 arm64 7.2.0-12ubuntu1 [25.6 kB] Get:9 http://ftpmaster.internal/ubuntu bionic/main arm64 gcc-7-base arm64 7.2.0-12ubuntu1 [18.4 kB] Get:10 http://ftpmaster.internal/ubuntu bionic/main arm64 libgcc1 arm64 1:7.2.0-12ubuntu1 [33.5 kB] Get:11 http://ftpmaster.internal/ubuntu bionic/main arm64 libatomic1 arm64 7.2.0-12ubuntu1 [6632 B] Get:12 http://ftpmaster.internal/ubuntu bionic/main arm64 libasan4 arm64 7.2.0-12ubuntu1 [335 kB] Get:13 http://ftpmaster.internal/ubuntu bionic/main arm64 liblsan0 arm64 7.2.0-12ubuntu1 [123 kB] Get:14 http://ftpmaster.internal/ubuntu bionic/main arm64 libtsan0 arm64 7.2.0-12ubuntu1 [265 kB] Get:15 http://ftpmaster.internal/ubuntu bionic/main arm64 libubsan0 arm64 7.2.0-12ubuntu1 [117 kB] Get:16 http://ftpmaster.internal/ubuntu bionic/main arm64 cpp-7 arm64 7.2.0-12ubuntu1 [5319 kB] Get:17 http://ftpmaster.internal/ubuntu bionic/main arm64 libcc1-0 arm64 7.2.0-12ubuntu1 [35.4 kB] Get:18 http://ftpmaster.internal/ubuntu bionic/main arm64 g++-7 arm64 7.2.0-12ubuntu1 [6126 kB] Get:19 http://ftpmaster.internal/ubuntu bionic/main arm64 gcc-7 arm64 7.2.0-12ubuntu1 [5958 kB] Get:20 http://ftpmaster.internal/ubuntu bionic/main arm64 libgcc-7-dev arm64 7.2.0-12ubuntu1 [834 kB] Get:21 http://ftpmaster.internal/ubuntu bionic/main arm64 libstdc++-7-dev arm64 7.2.0-12ubuntu1 [1455 kB] Get:22 http://ftpmaster.internal/ubuntu bionic/main arm64 libstdc++6 arm64 7.2.0-12ubuntu1 [377 kB] Get:23 http://ftpmaster.internal/ubuntu bionic-proposed/main arm64 libgmp10 arm64 2:6.1.2+dfsg-1.1 [204 kB] Get:24 http://ftpmaster.internal/ubuntu bionic/main arm64 libbinutils arm64 2.29.1-6ubuntu1 [425 kB] Get:25 http://ftpmaster.internal/ubuntu bionic/main arm64 binutils arm64 2.29.1-6ubuntu1 [3308 B] Get:26 http://ftpmaster.internal/ubuntu bionic/main arm64 binutils-common arm64 2.29.1-6ubuntu1 [190 kB] Get:27 http://ftpmaster.internal/ubuntu bionic/main arm64 binutils-aarch64-linux-gnu arm64 2.29.1-6ubuntu1 [2155 kB] Get:28 http://ftpmaster.internal/ubuntu bionic/main arm64 libc6 arm64 2.26-0ubuntu2 [2246 kB] Get:29 http://ftpmaster.internal/ubuntu bionic-proposed/main arm64 e2fslibs arm64 1.43.7-1 [138 kB] Get:30 http://ftpmaster.internal/ubuntu bionic-proposed/main arm64 e2fsprogs arm64 1.43.7-1 [454 kB] Get:31 http://ftpmaster.internal/ubuntu bionic-proposed/main arm64 perl-modules-5.26 all 5.26.1-2ubuntu1 [2760 kB] Get:32 http://ftpmaster.internal/ubuntu bionic-proposed/main arm64 libperl5.26 arm64 5.26.1-2ubuntu1 [3329 kB] Get:33 http://ftpmaster.internal/ubuntu bionic-proposed/main arm64 perl arm64 5.26.1-2ubuntu1 [201 kB] Get:34 http://ftpmaster.internal/ubuntu bionic-proposed/main arm64 perl-base arm64 5.26.1-2ubuntu1 [1235 kB] Get:35 http://ftpmaster.internal/ubuntu bionic-proposed/main arm64 base-passwd arm64 3.5.44 [45.6 kB] Get:36 http://ftpmaster.internal/ubuntu bionic/main arm64 libc-bin arm64 2.26-0ubuntu2 [475 kB] Get:37 http://ftpmaster.internal/ubuntu bionic-proposed/main arm64 libudev1 arm64 235-2ubuntu1 [45.9 kB] Get:38 http://ftpmaster.internal/ubuntu bionic-proposed/main arm64 libapt-pkg5.0 arm64 1.6~alpha3 [741 kB] Get:39 http://ftpmaster.internal/ubuntu bionic-proposed/main arm64 libgpg-error0 arm64 1.27-4 [32.7 kB] Get:40 http://ftpmaster.internal/ubuntu bionic/main arm64 libgcrypt20 arm64 1.7.9-1 [314 kB] Get:41 http://ftpmaster.internal/ubuntu bionic/main arm64 gpgv arm64 2.1.15-1ubuntu8 [156 kB] Get:42 http://ftpmaster.internal/ubuntu bionic/main arm64 libseccomp2 arm64 2.3.1-2.1ubuntu3 [33.9 kB] Get:43 http://ftpmaster.internal/ubuntu bionic-proposed/main arm64 apt arm64 1.6~alpha3 [1112 kB] Get:44 http://ftpmaster.internal/ubuntu bionic-proposed/main arm64 debconf all 1.5.64 [124 kB] Get:45 http://ftpmaster.internal/ubuntu bionic/main arm64 libcap2 arm64 1:2.25-1.1 [12.4 kB] Get:46 http://ftpmaster.internal/ubuntu bionic/main arm64 libpcre3 arm64 2:8.39-5ubuntu3 [203 kB] Get:47 http://ftpmaster.internal/ubuntu bionic-proposed/main arm64 libselinux1 arm64 2.7-2 [57.4 kB] Get:48 http://ftpmaster.internal/ubuntu bionic-proposed/main arm64 systemd arm64 235-2ubuntu1 [2488 kB] Get:49 http://ftpmaster.internal/ubuntu bionic-proposed/main arm64 libsystemd0 arm64 235-2ubuntu1 [165 kB] Get:50 http://ftpmaster.internal/ubuntu bionic-proposed/main arm64 systemd-sysv arm64 235-2ubuntu1 [12.7 kB] Get:51 http://ftpmaster.internal/ubuntu bionic-proposed/main arm64 libcap-ng0 arm64 0.7.7-3.1 [10.0 kB] Get:52 http://ftpmaster.internal/ubuntu bionic-proposed/main arm64 libcomerr2 arm64 1.43.7-1 [10.8 kB] Get:53 http://ftpmaster.internal/ubuntu bionic/main arm64 libsemanage-common all 2.7-2 [6916 B] Get:54 http://ftpmaster.internal/ubuntu bionic/main arm64 libsemanage1 arm64 2.7-2 [70.1 kB] Get:55 http://ftpmaster.internal/ubuntu bionic-proposed/main arm64 libss2 arm64 1.43.7-1 [9884 B] Get:56 http://ftpmaster.internal/ubuntu bionic/main arm64 libnettle6 arm64 3.3-2 [96.3 kB] Get:57 http://ftpmaster.internal/ubuntu bionic/main arm64 libhogweed4 arm64 3.3-2 [128 kB] Get:58 http://ftpmaster.internal/ubuntu bionic-proposed/main arm64 libp11-kit0 arm64 0.23.9-2 [138 kB] Get:59 http://ftpmaster.internal/ubuntu bionic-proposed/main arm64 pinentry-curses arm64 1.0.0-3 [31.3 kB] Get:60 http://ftpmaster.internal/ubuntu bionic/main arm64 gnupg arm64 2.1.15-1ubuntu8 [706 kB] Get:61 http://ftpmaster.internal/ubuntu bionic/main arm64 gnupg-agent arm64 2.1.15-1ubuntu8 [213 kB] Get:62 http://ftpmaster.internal/ubuntu bionic/main arm64 libsqlite3-0 arm64 3.20.1-2 [422 kB] Get:63 http://ftpmaster.internal/ubuntu bionic/main arm64 multiarch-support arm64 2.26-0ubuntu2 [6832 B] Get:64 http://ftpmaster.internal/ubuntu bionic/main arm64 tzdata all 2017c-1 [188 kB] Get:65 http://ftpmaster.internal/ubuntu bionic-proposed/main arm64 libgssapi-krb5-2 arm64 1.15.2-2 [101 kB] Get:66 http://ftpmaster.internal/ubuntu bionic-proposed/main arm64 libkrb5-3 arm64 1.15.2-2 [240 kB] Get:67 http://ftpmaster.internal/ubuntu bionic-proposed/main arm64 libkrb5support0 arm64 1.15.2-2 [28.5 kB] Get:68 http://ftpmaster.internal/ubuntu bionic-proposed/main arm64 libk5crypto3 arm64 1.15.2-2 [79.7 kB] Get:69 http://ftpmaster.internal/ubuntu bionic/main arm64 libkeyutils1 arm64 1.5.9-9.1ubuntu1 [8884 B] Get:70 http://ftpmaster.internal/ubuntu bionic/main arm64 libpng16-16 arm64 1.6.34-1 [161 kB] Get:71 http://ftpmaster.internal/ubuntu bionic/main arm64 dpkg-dev all 1.19.0.4ubuntu1 [607 kB] Get:72 http://ftpmaster.internal/ubuntu bionic/main arm64 libdpkg-perl all 1.19.0.4ubuntu1 [211 kB] Get:73 http://ftpmaster.internal/ubuntu bionic/main arm64 build-essential arm64 12.4ubuntu1 [4754 B] Get:74 http://ftpmaster.internal/ubuntu bionic-proposed/main arm64 libpsl5 arm64 0.18.0-4 [39.9 kB] Get:75 http://ftpmaster.internal/ubuntu bionic/main arm64 libcurl3-gnutls arm64 7.55.1-1ubuntu2.1 [162 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 49.3 MB in 4s (11.5 MB/s) (Reading database ... 12563 files and directories currently installed.) Preparing to unpack .../base-files_10ubuntu1_arm64.deb ... Unpacking base-files (10ubuntu1) over (9.6ubuntu101) ... Setting up base-files (10ubuntu1) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... 12563 files and directories currently installed.) Preparing to unpack .../coreutils_8.26-3ubuntu4_arm64.deb ... Unpacking coreutils (8.26-3ubuntu4) over (8.26-3ubuntu3) ... Setting up coreutils (8.26-3ubuntu4) ... (Reading database ... 12563 files and directories currently installed.) Preparing to unpack .../dpkg_1.19.0.4ubuntu1_arm64.deb ... Unpacking dpkg (1.19.0.4ubuntu1) over (1.18.24ubuntu1) ... Setting up dpkg (1.19.0.4ubuntu1) ... Installing new version of config file /etc/alternatives/README ... Installing new version of config file /etc/cron.daily/dpkg ... 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RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-13655223 arm64 bionic-proposed -c chroot:build-PACKAGEBUILD-13655223 --arch=arm64 --dist=bionic-proposed --nolog glam2_1064-4.dsc Initiating build PACKAGEBUILD-13655223 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-97-generic #120-Ubuntu SMP Tue Sep 19 17:31:48 UTC 2017 aarch64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos01-arm64-017.buildd +==============================================================================+ | glam2 1064-4 (arm64) 01 Nov 2017 16:49 | +==============================================================================+ Package: glam2 Version: 1064-4 Source Version: 1064-4 Distribution: bionic-proposed Machine Architecture: arm64 Host Architecture: arm64 Build Architecture: arm64 I: NOTICE: Log filtering will replace 'build/glam2-A7Pn4P/glam2-1064' with '<>' I: NOTICE: Log filtering will replace 'build/glam2-A7Pn4P' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-13655223/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- glam2_1064-4.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-88xo6F/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-88xo6F/apt_archive ./ InRelease Get:2 copy:/<>/resolver-88xo6F/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-88xo6F/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-88xo6F/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-88xo6F/apt_archive ./ Packages [527 B] Fetched 2860 B in 0s (128 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libasn1-8-heimdal libcurl3-gnutls libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libidn2-0 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libpsl5 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libunistring0 libwind0-heimdal Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-88xo6F/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12569 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 10), libfftw3-dev Filtered Build-Depends: debhelper (>= 10), libfftw3-dev dpkg-deb: building package 'sbuild-build-depends-glam2-dummy' in '/<>/resolver-c44UcL/apt_archive/sbuild-build-depends-glam2-dummy.deb'. Ign:1 copy:/<>/resolver-c44UcL/apt_archive ./ InRelease Get:2 copy:/<>/resolver-c44UcL/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-c44UcL/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-c44UcL/apt_archive ./ Sources [218 B] Get:5 copy:/<>/resolver-c44UcL/apt_archive ./ Packages [533 B] Fetched 2870 B in 0s (120 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install glam2 build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libasn1-8-heimdal libcurl3-gnutls libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libidn2-0 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libpsl5 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libwind0-heimdal Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-long3 libfftw3-single3 libfile-stripnondeterminism-perl libglib2.0-0 libicu59 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libtimedate-perl libtool libxml2 m4 man-db po-debconf Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make dwz gettext-doc libasprintf-dev libgettextpo-dev groff libfftw3-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc less www-browser libmail-box-perl Recommended packages: curl | wget | lynx-cur libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl The following packages will be REMOVED: pkg-create-dbgsym* The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-long3 libfftw3-single3 libfile-stripnondeterminism-perl libglib2.0-0 libicu59 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libtimedate-perl libtool libxml2 m4 man-db po-debconf sbuild-build-depends-glam2-dummy 0 upgraded, 35 newly installed, 1 to remove and 0 not upgraded. Need to get 18.5 MB of archives. After this operation, 73.1 MB of additional disk space will be used. Get:1 copy:/<>/resolver-c44UcL/apt_archive ./ sbuild-build-depends-glam2-dummy 0.invalid.0 [864 B] Get:2 http://ftpmaster.internal/ubuntu bionic/main arm64 groff-base arm64 1.22.3-9 [1129 kB] Get:3 http://ftpmaster.internal/ubuntu bionic-proposed/main arm64 libbsd0 arm64 0.8.6-2 [36.7 kB] Get:4 http://ftpmaster.internal/ubuntu bionic/main arm64 bsdmainutils arm64 9.0.12+nmu1ubuntu1 [172 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main arm64 libpipeline1 arm64 1.4.2-1 [21.7 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main arm64 man-db arm64 2.7.6.1-2 [871 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/main arm64 libmagic-mgc arm64 1:5.32-1 [184 kB] Get:8 http://ftpmaster.internal/ubuntu bionic/main arm64 libmagic1 arm64 1:5.32-1 [61.7 kB] Get:9 http://ftpmaster.internal/ubuntu bionic/main arm64 file arm64 1:5.32-1 [21.6 kB] Get:10 http://ftpmaster.internal/ubuntu bionic/main arm64 libglib2.0-0 arm64 2.54.1-1ubuntu1 [980 kB] Get:11 http://ftpmaster.internal/ubuntu bionic/main arm64 libicu59 arm64 59.1-3ubuntu1 [7752 kB] Get:12 http://ftpmaster.internal/ubuntu bionic/main arm64 libxml2 arm64 2.9.4+dfsg1-5ubuntu1 [553 kB] Get:13 http://ftpmaster.internal/ubuntu bionic/main arm64 gettext-base arm64 0.19.8.1-4ubuntu1 [46.0 kB] Get:14 http://ftpmaster.internal/ubuntu bionic/main arm64 libsigsegv2 arm64 2.11-1 [12.5 kB] Get:15 http://ftpmaster.internal/ubuntu bionic/main arm64 m4 arm64 1.4.18-1 [185 kB] Get:16 http://ftpmaster.internal/ubuntu bionic/main arm64 autoconf all 2.69-11 [322 kB] Get:17 http://ftpmaster.internal/ubuntu bionic/main arm64 autotools-dev all 20161112.1+nmu1 [40.2 kB] Get:18 http://ftpmaster.internal/ubuntu bionic/main arm64 automake all 1:1.15.1-3ubuntu1 [509 kB] Get:19 http://ftpmaster.internal/ubuntu bionic/main arm64 autopoint all 0.19.8.1-4ubuntu1 [412 kB] Get:20 http://ftpmaster.internal/ubuntu bionic/main arm64 libtool all 2.4.6-2 [194 kB] Get:21 http://ftpmaster.internal/ubuntu bionic/main arm64 dh-autoreconf all 14 [15.5 kB] Get:22 http://ftpmaster.internal/ubuntu bionic/main arm64 libarchive-zip-perl all 1.59-1 [84.0 kB] Get:23 http://ftpmaster.internal/ubuntu bionic/main arm64 libfile-stripnondeterminism-perl all 0.039-1 [13.8 kB] Get:24 http://ftpmaster.internal/ubuntu bionic/main arm64 libtimedate-perl all 2.3000-2 [37.5 kB] Get:25 http://ftpmaster.internal/ubuntu bionic/main arm64 dh-strip-nondeterminism all 0.039-1 [5192 B] Get:26 http://ftpmaster.internal/ubuntu bionic/main arm64 libcroco3 arm64 0.6.12-1 [66.1 kB] Get:27 http://ftpmaster.internal/ubuntu bionic/main arm64 gettext arm64 0.19.8.1-4ubuntu1 [1020 kB] Get:28 http://ftpmaster.internal/ubuntu bionic/main arm64 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:29 http://ftpmaster.internal/ubuntu bionic/main arm64 po-debconf all 1.0.20 [232 kB] Get:30 http://ftpmaster.internal/ubuntu bionic/main arm64 debhelper all 10.10.5ubuntu1 [876 kB] Get:31 http://ftpmaster.internal/ubuntu bionic-proposed/main arm64 libfftw3-double3 arm64 3.3.6p2-2 [316 kB] Get:32 http://ftpmaster.internal/ubuntu bionic-proposed/main arm64 libfftw3-long3 arm64 3.3.6p2-2 [514 kB] Get:33 http://ftpmaster.internal/ubuntu bionic-proposed/main arm64 libfftw3-single3 arm64 3.3.6p2-2 [525 kB] Get:34 http://ftpmaster.internal/ubuntu bionic-proposed/main arm64 libfftw3-bin arm64 3.3.6p2-2 [26.5 kB] Get:35 http://ftpmaster.internal/ubuntu bionic-proposed/main arm64 libfftw3-dev arm64 3.3.6p2-2 [1243 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 18.5 MB in 1s (10.0 MB/s) (Reading database ... 12569 files and directories currently installed.) Removing pkg-create-dbgsym (0.73) ... Selecting previously unselected package groff-base. (Reading database ... 12560 files and directories currently installed.) Preparing to unpack .../00-groff-base_1.22.3-9_arm64.deb ... Unpacking groff-base (1.22.3-9) ... Selecting previously unselected package libbsd0:arm64. Preparing to unpack .../01-libbsd0_0.8.6-2_arm64.deb ... Unpacking libbsd0:arm64 (0.8.6-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../02-bsdmainutils_9.0.12+nmu1ubuntu1_arm64.deb ... Unpacking bsdmainutils (9.0.12+nmu1ubuntu1) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../03-libpipeline1_1.4.2-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.4.2-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.7.6.1-2_arm64.deb ... Unpacking man-db (2.7.6.1-2) ... Selecting previously unselected package libmagic-mgc. 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Unpacking sbuild-build-depends-glam2-dummy (0.invalid.0) ... Setting up libarchive-zip-perl (1.59-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libsigsegv2:arm64 (2.11-1) ... Setting up libicu59:arm64 (59.1-3ubuntu1) ... Setting up groff-base (1.22.3-9) ... Setting up libglib2.0-0:arm64 (2.54.1-1ubuntu1) ... No schema files found: doing nothing. Setting up gettext-base (0.19.8.1-4ubuntu1) ... Setting up libpipeline1:arm64 (1.4.2-1) ... Setting up m4 (1.4.18-1) ... Setting up libfftw3-double3:arm64 (3.3.6p2-2) ... Setting up libbsd0:arm64 (0.8.6-2) ... Setting up libxml2:arm64 (2.9.4+dfsg1-5ubuntu1) ... Setting up libmagic-mgc (1:5.32-1) ... Setting up libmagic1:arm64 (1:5.32-1) ... Setting up libcroco3:arm64 (0.6.12-1) ... Processing triggers for libc-bin (2.26-0ubuntu2) ... Setting up autotools-dev (20161112.1+nmu1) ... Setting up libfftw3-single3:arm64 (3.3.6p2-2) ... Setting up bsdmainutils (9.0.12+nmu1ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libfftw3-long3:arm64 (3.3.6p2-2) ... Setting up autopoint (0.19.8.1-4ubuntu1) ... Setting up libfile-stripnondeterminism-perl (0.039-1) ... Setting up libfftw3-bin (3.3.6p2-2) ... Setting up gettext (0.19.8.1-4ubuntu1) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.32-1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libfftw3-dev:arm64 (3.3.6p2-2) ... Setting up automake (1:1.15.1-3ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.7.6.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libtool (2.4.6-2) ... Setting up po-debconf (1.0.20) ... Setting up dh-autoreconf (14) ... Setting up dh-strip-nondeterminism (0.039-1) ... Setting up debhelper (10.10.5ubuntu1) ... Setting up sbuild-build-depends-glam2-dummy (0.invalid.0) ... (Reading database ... 14455 files and directories currently installed.) Purging configuration files for pkg-create-dbgsym (0.73) ... Processing triggers for libc-bin (2.26-0ubuntu2) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-97-generic arm64 (aarch64) Toolchain package versions: binutils_2.29.1-6ubuntu1 dpkg-dev_1.19.0.4ubuntu1 g++-7_7.2.0-12ubuntu1 gcc-7_7.2.0-12ubuntu1 libc6-dev_2.26-0ubuntu2 libstdc++-7-dev_7.2.0-12ubuntu1 libstdc++6_7.2.0-12ubuntu1 linux-libc-dev_4.13.0-16.19 Package versions: adduser_3.113+nmu3ubuntu5 advancecomp_2.0-1 apt_1.6~alpha3 autoconf_2.69-11 automake_1:1.15.1-3ubuntu1 autopoint_0.19.8.1-4ubuntu1 autotools-dev_20161112.1+nmu1 base-files_10ubuntu1 base-passwd_3.5.44 bash_4.4-5ubuntu1 binutils_2.29.1-6ubuntu1 binutils-aarch64-linux-gnu_2.29.1-6ubuntu1 binutils-common_2.29.1-6ubuntu1 bsdmainutils_9.0.12+nmu1ubuntu1 bsdutils_1:2.30.1-0ubuntu4 build-essential_12.4ubuntu1 bzip2_1.0.6-8.1 ca-certificates_20170717 coreutils_8.26-3ubuntu4 cpp_4:7.2.0-1ubuntu1 cpp-7_7.2.0-12ubuntu1 dash_0.5.8-2.3ubuntu1 debconf_1.5.64 debhelper_10.10.5ubuntu1 debianutils_4.8.2 dh-autoreconf_14 dh-strip-nondeterminism_0.039-1 diffutils_1:3.6-1 dmsetup_2:1.02.137-2ubuntu3 dpkg_1.19.0.4ubuntu1 dpkg-dev_1.19.0.4ubuntu1 e2fslibs_1.43.7-1 e2fsprogs_1.43.7-1 fakeroot_1.21-1ubuntu2 fdisk_2.30.1-0ubuntu4 file_1:5.32-1 findutils_4.6.0+git+20170729-2 g++_4:7.2.0-1ubuntu1 g++-7_7.2.0-12ubuntu1 gcc_4:7.2.0-1ubuntu1 gcc-7_7.2.0-12ubuntu1 gcc-7-base_7.2.0-12ubuntu1 gettext_0.19.8.1-4ubuntu1 gettext-base_0.19.8.1-4ubuntu1 gnupg_2.1.15-1ubuntu8 gnupg-agent_2.1.15-1ubuntu8 gpgv_2.1.15-1ubuntu8 grep_3.1-2 groff-base_1.22.3-9 gzip_1.6-5ubuntu1 hostname_3.18 init_1.49ubuntu1 init-system-helpers_1.49ubuntu1 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libapparmor1_2.11.0-2ubuntu17 libapt-pkg5.0_1.6~alpha3 libarchive-zip-perl_1.59-1 libasan4_7.2.0-12ubuntu1 libasn1-8-heimdal_7.4.0.dfsg.1-2 libassuan0_2.4.3-3 libatomic1_7.2.0-12ubuntu1 libattr1_1:2.4.47-2build1 libaudit-common_1:2.7.7-1ubuntu2 libaudit1_1:2.7.7-1ubuntu2 libbinutils_2.29.1-6ubuntu1 libblkid1_2.30.1-0ubuntu4 libbsd0_0.8.6-2 libbz2-1.0_1.0.6-8.1 libc-bin_2.26-0ubuntu2 libc-dev-bin_2.26-0ubuntu2 libc6_2.26-0ubuntu2 libc6-dev_2.26-0ubuntu2 libcap-ng0_0.7.7-3.1 libcap2_1:2.25-1.1 libcc1-0_7.2.0-12ubuntu1 libcomerr2_1.43.7-1 libcroco3_0.6.12-1 libcryptsetup4_2:1.7.3-4ubuntu1 libcurl3-gnutls_7.55.1-1ubuntu2.1 libdb5.3_5.3.28-13.1 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.137-2ubuntu3 libdpkg-perl_1.19.0.4ubuntu1 libfakeroot_1.21-1ubuntu2 libfdisk1_2.30.1-0ubuntu4 libffi6_3.2.1-6 libfftw3-bin_3.3.6p2-2 libfftw3-dev_3.3.6p2-2 libfftw3-double3_3.3.6p2-2 libfftw3-long3_3.3.6p2-2 libfftw3-single3_3.3.6p2-2 libfile-stripnondeterminism-perl_0.039-1 libgcc-7-dev_7.2.0-12ubuntu1 libgcc1_1:7.2.0-12ubuntu1 libgcrypt20_1.7.9-1 libgdbm3_1.8.3-14 libglib2.0-0_2.54.1-1ubuntu1 libgmp10_2:6.1.2+dfsg-1.1 libgnutls30_3.5.8-6ubuntu3 libgomp1_7.2.0-12ubuntu1 libgpg-error0_1.27-4 libgssapi-krb5-2_1.15.2-2 libgssapi3-heimdal_7.4.0.dfsg.1-2 libhcrypto4-heimdal_7.4.0.dfsg.1-2 libheimbase1-heimdal_7.4.0.dfsg.1-2 libheimntlm0-heimdal_7.4.0.dfsg.1-2 libhogweed4_3.3-2 libhx509-5-heimdal_7.4.0.dfsg.1-2 libicu59_59.1-3ubuntu1 libidn11_1.33-2 libidn2-0_2.0.2-5 libip4tc0_1.6.1-2ubuntu1 libisl15_0.18-1 libitm1_7.2.0-12ubuntu1 libk5crypto3_1.15.2-2 libkeyutils1_1.5.9-9.1ubuntu1 libkmod2_24-1ubuntu2 libkrb5-26-heimdal_7.4.0.dfsg.1-2 libkrb5-3_1.15.2-2 libkrb5support0_1.15.2-2 libksba8_1.3.5-2 libldap-2.4-2_2.4.45+dfsg-1ubuntu1 libldap-common_2.4.45+dfsg-1ubuntu1 liblockfile-bin_1.14-1 liblockfile1_1.14-1 liblsan0_7.2.0-12ubuntu1 liblz4-1_0.0~r131-2ubuntu2 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.32-1 libmagic1_1:5.32-1 libmount1_2.30.1-0ubuntu4 libmpc3_1.0.3-2 libmpfr4_3.1.6-1 libncurses5_6.0+20160625-1ubuntu1 libncursesw5_6.0+20160625-1ubuntu1 libnettle6_3.3-2 libnpth0_1.5-2 libp11-kit0_0.23.9-2 libpam-modules_1.1.8-3.2ubuntu3 libpam-modules-bin_1.1.8-3.2ubuntu3 libpam-runtime_1.1.8-3.2ubuntu3 libpam0g_1.1.8-3.2ubuntu3 libpcre3_2:8.39-5ubuntu3 libperl5.26_5.26.1-2ubuntu1 libpipeline1_1.4.2-1 libpng16-16_1.6.34-1 libprocps6_2:3.3.12-1ubuntu2 libpsl5_0.18.0-4 libreadline7_7.0-0ubuntu2 libroken18-heimdal_7.4.0.dfsg.1-2 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.27~101-g0780600+dfsg-3ubuntu1 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3ubuntu1 libseccomp2_2.3.1-2.1ubuntu3 libselinux1_2.7-2 libsemanage-common_2.7-2 libsemanage1_2.7-2 libsepol1_2.7-1 libsigsegv2_2.11-1 libslang2_2.3.1-5ubuntu1 libsmartcols1_2.30.1-0ubuntu4 libsqlite3-0_3.20.1-2 libss2_1.43.7-1 libssl1.0.0_1.0.2g-1ubuntu13 libstdc++-7-dev_7.2.0-12ubuntu1 libstdc++6_7.2.0-12ubuntu1 libsystemd0_235-2ubuntu1 libtasn1-6_4.12-2.1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160625-1ubuntu1 libtool_2.4.6-2 libtsan0_7.2.0-12ubuntu1 libubsan0_7.2.0-12ubuntu1 libudev1_235-2ubuntu1 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-31 libustr-1.0-1_1.0.4-6 libuuid1_2.30.1-0ubuntu4 libwind0-heimdal_7.4.0.dfsg.1-2 libxml2_2.9.4+dfsg1-5ubuntu1 linux-libc-dev_4.13.0-16.19 lockfile-progs_0.1.17build1 login_1:4.2-3.2ubuntu4 lsb-base_9.20160110ubuntu5 m4_1.4.18-1 make_4.1-9.1 man-db_2.7.6.1-2 mawk_1.3.3-17ubuntu2 mount_2.30.1-0ubuntu4 multiarch-support_2.26-0ubuntu2 ncurses-base_6.0+20160625-1ubuntu1 ncurses-bin_6.0+20160625-1ubuntu1 openssl_1.0.2g-1ubuntu13 optipng_0.7.6-1build1 passwd_1:4.2-3.2ubuntu4 patch_2.7.5-1build1 perl_5.26.1-2ubuntu1 perl-base_5.26.1-2ubuntu1 perl-modules-5.26_5.26.1-2ubuntu1 pinentry-curses_1.0.0-3 pkgbinarymangler_131 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-1ubuntu2 readline-common_7.0-0ubuntu2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-glam2-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.10 systemd_235-2ubuntu1 systemd-sysv_235-2ubuntu1 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.8git1 tar_1.29b-2 tzdata_2017c-1 ubuntu-keyring_2016.10.27 util-linux_2.30.1-0ubuntu4 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Wed Sep 27 14:30:37 2017 UTC gpgv: using RSA key gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./glam2_1064-4.dsc dpkg-source: info: extracting glam2 in glam2-1064 dpkg-source: info: unpacking glam2_1064.orig.tar.gz dpkg-source: info: unpacking glam2_1064-4.debian.tar.xz dpkg-source: info: applying hardening.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-13655223 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-13655223 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-13655223 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package glam2 dpkg-buildpackage: info: source version 1064-4 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build glam2-1064 dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean --sourcedirectory=src dh_auto_clean -O--sourcedirectory=src dh_autoreconf_clean -O--sourcedirectory=src debian/rules override_dh_clean make[1]: Entering directory '/<>' dh_clean rm -f purge/*.o purge/purge src/*.o src/glam2 src/glam2mask scr/glam2format src/glam2scan src/glam2fft src/glam2format make[1]: Leaving directory '/<>' debian/rules build-arch dh build-arch --sourcedirectory=src dh_update_autotools_config -a -O--sourcedirectory=src dh_autoreconf -a -O--sourcedirectory=src dh_auto_configure -a -O--sourcedirectory=src debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build cd src && make -j4 make[2]: Entering directory '/<>/src' cc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -o glam2 alphabet.c args.c column_sample.c dirichlet.c dna_prior.c fasta.c glam2.c glam2_aln.c init.c output.c recode3_20comp.c site_sample.c util.c -lm -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now cc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -o glam2scan alphabet.c scan_args.c dirichlet.c dna_prior.c fasta.c scan.c scan_init.c scan_output.c recode3_20comp.c util.c heap.c motif.c alignment.c -lm -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now cc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -o glam2format glam2format.c alignment.c fasta.c util.c -lm -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now cc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -o glam2mask glam2mask.c alignment.c fasta.c util.c -lm -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now alphabet.c: In function ‘alphabet_read’: alphabet.c:66:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fp, "%*[^\n]"); /* skip line */ ^~~~~~~~~~~~~~~~~~~~~ alphabet.c:77:9: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fp, "%*[^\n]"); /* skip line */ ^~~~~~~~~~~~~~~~~~~~~ alphabet.c: In function ‘alphabet_read’: alphabet.c:66:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fp, "%*[^\n]"); /* skip line */ ^~~~~~~~~~~~~~~~~~~~~ alphabet.c:77:9: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fp, "%*[^\n]"); /* skip line */ ^~~~~~~~~~~~~~~~~~~~~ dirichlet.c: In function ‘dmix_read’: dirichlet.c:282:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(stream, "%lf", &x); /* 1st number is sum of alphas: ignore */ ^~~~~~~~~~~~~~~~~~~~~~~~~ dirichlet.c: In function ‘dmix_read’: dirichlet.c:282:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(stream, "%lf", &x); /* 1st number is sum of alphas: ignore */ ^~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/<>/src' make --directory=src glam2fft make[2]: Entering directory '/<>/src' cc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -DFFT -o glam2fft alphabet.c args.c column_sample.c dirichlet.c dna_prior.c fasta.c glam2.c glam2_aln.c init.c output.c recode3_20comp.c site_sample.c util.c convolve.c -lm -lfftw3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now alphabet.c: In function ‘alphabet_read’: alphabet.c:66:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fp, "%*[^\n]"); /* skip line */ ^~~~~~~~~~~~~~~~~~~~~ alphabet.c:77:9: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fp, "%*[^\n]"); /* skip line */ ^~~~~~~~~~~~~~~~~~~~~ dirichlet.c: In function ‘dmix_read’: dirichlet.c:282:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(stream, "%lf", &x); /* 1st number is sum of alphas: ignore */ ^~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/<>/src' make --directory=purge make[2]: Entering directory '/<>/purge' cc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -o purge *.c -lm -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now block.c: In function ‘IntersectBlockL’: block.c:314:18: warning: operation on ‘*(B2->b + (sizetype)e)’ may be undefined [-Wsequence-point] if((B2->b[e] = B1->b[e]) & B2->b[e]) {B2->list[k++]=e; } ~~~~~~~~~~^~~~~~~~~~~ gblast.c: In function ‘MakeGBlast’: gblast.c:110:2: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] for(c=0; c <= nAlpha(A); c++) free(best[c]); free(best); ^~~ gblast.c:110:47: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ for(c=0; c <= nAlpha(A); c++) free(best[c]); free(best); ^~~~ gblast.c:14:14: warning: variable ‘time1’ set but not used [-Wunused-but-set-variable] long time1; ^~~~~ gblast.c:11:9: warning: variable ‘R’ set but not used [-Wunused-but-set-variable] int **R; ^ sequence.c: In function ‘RandomizeSeq’: sequence.c:235:2: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] if(E->info!=NULL)free(E->info); E->info = NULL; return E; ^~ sequence.c:235:34: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ if(E->info!=NULL)free(E->info); E->info = NULL; return E; ^ sequence.c: In function ‘ShuffleSeq’: sequence.c:290:2: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] if(E->info!=NULL)free(E->info); E->info = NULL; ^~ sequence.c:290:34: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ if(E->info!=NULL)free(E->info); E->info = NULL; ^ sequence.c: In function ‘ShuffleSeq2’: sequence.c:309:2: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] if(E->info!=NULL)free(E->info); E->info = NULL; ^~ sequence.c:309:34: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ if(E->info!=NULL)free(E->info); E->info = NULL; ^ sequence.c: In function ‘CenterSeqHSP’: sequence.c:429:17: warning: variable ‘score’ set but not used [-Wunused-but-set-variable] long v,n,n1,n2,score=0,e,start,end; ^~~~~ make[2]: Leaving directory '/<>/purge' make[1]: Leaving directory '/<>' dh_auto_test -a -O--sourcedirectory=src create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --sourcedirectory=src dh_testroot -a -O--sourcedirectory=src dh_prep -a -O--sourcedirectory=src dh_auto_install -a -O--sourcedirectory=src debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install # purge is renamed glam2-purge to avoid namespace problems. mv /<>/debian/glam2/usr/bin/purge /<>/debian/glam2/usr/bin/glam2-purge # FFT is enabled by default in Debian. mv /<>/debian/glam2/usr/bin/glam2fft /<>/debian/glam2/usr/bin/glam2 make[1]: Leaving directory '/<>' dh_installdocs -a -O--sourcedirectory=src dh_installchangelogs -a -O--sourcedirectory=src dh_installexamples -a -O--sourcedirectory=src dh_installman -a -O--sourcedirectory=src dh_perl -a -O--sourcedirectory=src dh_link -a -O--sourcedirectory=src dh_strip_nondeterminism -a -O--sourcedirectory=src debian/rules override_dh_compress make[1]: Entering directory '/<>' dh_compress --exclude=.pdf make[1]: Leaving directory '/<>' dh_fixperms -a -O--sourcedirectory=src dh_missing -a -O--sourcedirectory=src dh_strip -a -O--sourcedirectory=src dh_makeshlibs -a -O--sourcedirectory=src dh_shlibdeps -a -O--sourcedirectory=src dh_installdeb -a -O--sourcedirectory=src dh_gencontrol -a -O--sourcedirectory=src dh_md5sums -a -O--sourcedirectory=src dh_builddeb -a -O--sourcedirectory=src INFO: pkgstriptranslations version 131 INFO: pkgstriptranslations version 131 pkgstriptranslations: processing glam2 (in debian/glam2); do_strip: , oemstrip: pkgstriptranslations: processing glam2-dbgsym (in debian/.debhelper/glam2/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/glam2/DEBIAN/control, package glam2, directory debian/glam2 pkgstripfiles: processing control file: debian/.debhelper/glam2/dbgsym-root/DEBIAN/control, package glam2-dbgsym, directory debian/.debhelper/glam2/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package glam2-dbgsym ... pkgstripfiles: No PNG files. dpkg-deb: building package 'glam2-dbgsym' in 'debian/.debhelper/scratch-space/build-glam2/glam2-dbgsym_1064-4_arm64.deb'. pkgstripfiles: Running PNG optimization (using 4 cpus) for package glam2 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'glam2' in '../glam2_1064-4_arm64.deb'. Renaming glam2-dbgsym_1064-4_arm64.deb to glam2-dbgsym_1064-4_arm64.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../glam2_1064-4_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build glam2-1064 dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20171101-1650 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ glam2_1064-4_arm64.changes: --------------------------- Format: 1.8 Date: Wed, 27 Sep 2017 16:07:05 +0200 Source: glam2 Binary: glam2 Architecture: arm64 Version: 1064-4 Distribution: bionic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: glam2 - gapped protein motifs from unaligned sequences Changes: glam2 (1064-4) unstable; urgency=medium . [ James McCoy ] * Moved debian/upstream to debian/upstream/metadata . [ Andreas Tille ] * Moved packaging from SVN to Git * Standards-Version: 4.1.0 (no changes needed) * debhelper 10 * No separate download for this package any more thus fake watch file * New homepage reflecting the merge with (unfortunately non-free) meme * Explain glam from meme in README.source * do not parse d/changelog * hardening Checksums-Sha1: 503ab5ce7ab30bfba4112917d3ae16fd4cfbcd91 272152 glam2-dbgsym_1064-4_arm64.ddeb 52406348c7d9c09b8ba11973ba29d4255d6f1c82 5003 glam2_1064-4_arm64.buildinfo 779c4a35ed74a64444ed68a17b5f58aeb033ea83 223968 glam2_1064-4_arm64.deb Checksums-Sha256: 83d969771dfc3e527ee6f3bc2fec16e94c5b9b194286d33624367ac201dc02f7 272152 glam2-dbgsym_1064-4_arm64.ddeb 4efa32a7387bf209c06a40beb192feb25d4a997486a8fb920507236116da649c 5003 glam2_1064-4_arm64.buildinfo cee86254a25c4a7c209ac441dd16c9c2e16dc00d1c4aa60b07f8a71e8018a716 223968 glam2_1064-4_arm64.deb Files: 1dc46bc9d3daf8683cb9c920d8977d34 272152 debug optional glam2-dbgsym_1064-4_arm64.ddeb 5b1a69cdc783eb86048d121b67d7020e 5003 science optional glam2_1064-4_arm64.buildinfo 4e3e57fa778d3bac6e1fa04a4e89245f 223968 science optional glam2_1064-4_arm64.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ glam2_1064-4_arm64.deb ---------------------- new debian package, version 2.0. size 223968 bytes: control archive=1968 bytes. 1645 bytes, 33 lines control 2269 bytes, 34 lines md5sums Package: glam2 Version: 1064-4 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 471 Depends: libc6 (>= 2.17), libfftw3-double3 (>= 3.3.5) Section: science Priority: optional Homepage: http://acb.qfab.org/acb/glam2/ Description: gapped protein motifs from unaligned sequences GLAM2 is a software package for finding motifs in sequences, typically amino-acid or nucleotide sequences. A motif is a re-occurring sequence pattern: typical examples are the TATA box and the CAAX prenylation motif. The main innovation of GLAM2 is that it allows insertions and deletions in motifs. . This package includes programs for discovering motifs shared by a set of sequences and finding matches to these motifs in a sequence database, as well as utilities for converting glam2 motifs to standard alignment formats, masking glam2 motifs out of sequences so that weaker motifs can be found, and removing highly similar members of a set of sequences. . The package includes these programs: glam2: discovering motifs shared by a set of sequences; glam2scan: finding matches, in a sequence database, to a motif discovered by glam2; glam2format: converting glam2 motifs to standard alignment formats; glam2mask: masking glam2 motifs out of sequences, so that weaker motifs can be found; glam2-purge: removing highly similar members of a set of sequences. . In this binary package, the fast Fourier algorithm (FFT) was enabled for the glam2 program. drwxr-xr-x root/root 0 2017-09-27 14:07 ./ drwxr-xr-x root/root 0 2017-09-27 14:07 ./usr/ drwxr-xr-x root/root 0 2017-09-27 14:07 ./usr/bin/ -rwxr-xr-x root/root 75632 2017-09-27 14:07 ./usr/bin/glam2 -rwxr-xr-x root/root 63616 2017-09-27 14:07 ./usr/bin/glam2-purge -rwxr-xr-x root/root 30576 2017-09-27 14:07 ./usr/bin/glam2format -rwxr-xr-x root/root 26480 2017-09-27 14:07 ./usr/bin/glam2mask -rwxr-xr-x root/root 51056 2017-09-27 14:07 ./usr/bin/glam2scan drwxr-xr-x root/root 0 2017-09-27 14:07 ./usr/share/ drwxr-xr-x root/root 0 2017-09-27 14:07 ./usr/share/doc-base/ -rw-r--r-- root/root 462 2017-09-27 14:07 ./usr/share/doc-base/glam2-manual -rw-r--r-- root/root 231 2017-09-27 14:07 ./usr/share/doc-base/glam2-method drwxr-xr-x root/root 0 2017-09-27 14:07 ./usr/share/doc/ drwxr-xr-x root/root 0 2017-09-27 14:07 ./usr/share/doc/glam2/ -rw-r--r-- root/root 144918 2007-11-26 08:15 ./usr/share/doc/glam2/GLAM2_method.pdf -rw-r--r-- root/root 79 2007-08-23 09:34 ./usr/share/doc/glam2/README -rw-r--r-- root/root 287 2017-09-27 14:07 ./usr/share/doc/glam2/README.Debian -rw-r--r-- root/root 3222 2007-08-23 11:19 ./usr/share/doc/glam2/alphabet.html -rw-r--r-- root/root 1064 2017-09-27 14:07 ./usr/share/doc/glam2/changelog.Debian.gz -rw-r--r-- root/root 3232 2017-09-27 14:07 ./usr/share/doc/glam2/copyright -rw-r--r-- root/root 1639 2007-08-23 09:08 ./usr/share/doc/glam2/dirichlet.html drwxr-xr-x root/root 0 2017-09-27 14:07 ./usr/share/doc/glam2/examples/ -rw-r--r-- root/root 2106 2007-06-13 05:01 ./usr/share/doc/glam2/examples/crp0.s -rw-r--r-- root/root 61 2007-04-12 02:03 ./usr/share/doc/glam2/examples/dna.alph -rw-r--r-- root/root 359 2007-04-12 02:03 ./usr/share/doc/glam2/examples/glam_tfbs.1comp -rw-r--r-- root/root 977 2007-06-13 05:01 ./usr/share/doc/glam2/examples/lipocalin.s -rw-r--r-- root/root 2810 2007-04-12 02:03 ./usr/share/doc/glam2/examples/recode3.20comp.gz -rw-r--r-- root/root 369 2007-04-12 02:03 ./usr/share/doc/glam2/examples/robinson.alph -rw-r--r-- root/root 93 2007-08-07 08:29 ./usr/share/doc/glam2/glam2.css -rw-r--r-- root/root 5645 2007-08-23 11:27 ./usr/share/doc/glam2/glam2_ref.html -rw-r--r-- root/root 13483 2008-05-09 16:05 ./usr/share/doc/glam2/glam2_tut.html -rw-r--r-- root/root 2134 2007-08-23 09:08 ./usr/share/doc/glam2/glam2format.html -rw-r--r-- root/root 1164 2007-08-23 09:08 ./usr/share/doc/glam2/glam2mask.html -rw-r--r-- root/root 3892 2007-08-23 09:10 ./usr/share/doc/glam2/glam2scan.html -rw-r--r-- root/root 3705 2008-01-21 02:45 ./usr/share/doc/glam2/index.html -rw-r--r-- root/root 2556 2008-05-19 01:21 ./usr/share/doc/glam2/install.html -rw-r--r-- root/root 2690 2007-11-08 02:14 ./usr/share/doc/glam2/purge.html drwxr-xr-x root/root 0 2017-09-27 14:07 ./usr/share/man/ drwxr-xr-x root/root 0 2017-09-27 14:07 ./usr/share/man/man1/ -rw-r--r-- root/root 1418 2017-09-27 14:07 ./usr/share/man/man1/glam2-purge.1.gz -rw-r--r-- root/root 1502 2017-09-27 14:07 ./usr/share/man/man1/glam2.1.gz -rw-r--r-- root/root 1366 2017-09-27 14:07 ./usr/share/man/man1/glam2format.1.gz -rw-r--r-- root/root 1011 2017-09-27 14:07 ./usr/share/man/man1/glam2mask.1.gz -rw-r--r-- root/root 1124 2017-09-27 14:07 ./usr/share/man/man1/glam2scan.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build-Space: 3924 Build-Time: 38 Distribution: bionic-proposed Host Architecture: arm64 Install-Time: 18 Job: glam2_1064-4.dsc Machine Architecture: arm64 Package: glam2 Package-Time: 57 Source-Version: 1064-4 Space: 3924 Status: successful Version: 1064-4 -------------------------------------------------------------------------------- Finished at 20171101-1650 Build needed 00:00:57, 3924k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=bionic --arch=arm64 PACKAGEBUILD-13655223 Scanning for processes to kill in build PACKAGEBUILD-13655223 RUN: /usr/share/launchpad-buildd/slavebin/in-target umount-chroot --backend=chroot --series=bionic --arch=arm64 PACKAGEBUILD-13655223 Stopping target for build PACKAGEBUILD-13655223 RUN: /usr/share/launchpad-buildd/slavebin/in-target remove-build --backend=chroot --series=bionic --arch=arm64 PACKAGEBUILD-13655223 Removing build PACKAGEBUILD-13655223