Ubuntu
gfapy package

gfapy 1.0.0+dfsg-3 source package in Ubuntu

Changelog

gfapy (1.0.0+dfsg-3) unstable; urgency=medium

  * Team upload.
  * debhelper 11
  * Point Vcs fields to salsa.debian.org
  * Standards-Version: 4.2.1
  * Drop unneeded Testsuite field
  * Do not parse d/changelog
  * Binary package in section python

 -- Andreas Tille <email address hidden>  Mon, 24 Sep 2018 11:17:29 +0200

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section

Downloads

File Size SHA-256 Checksum
gfapy_1.0.0+dfsg-3.dsc 2.0 KiB 5669c4210e56080be0a9f382ce292ba5045057c66aa4a7ae6210244658f0f751
gfapy_1.0.0+dfsg.orig.tar.xz 127.2 KiB a730f7cf716c8309934bffe9e03d8d87a9ae0369b62e20ae218259f568356c85
gfapy_1.0.0+dfsg-3.debian.tar.xz 3.6 KiB 853cf626917c0096424d4e1575ac0143431c70dfdc7615c2d7865118aedd84aa

No changes file available.

Binary packages built by this source

python3-gfapy: flexible and extensible software library for handling sequence graphs

 The Graphical Fragment Assembly (GFA) are formats for the representation of
 sequence graphs, including assembly, variation and splicing graphs. Two
 versions of GFA have been defined (GFA1 and GFA2) and several sequence
 analysis programs have been adopting the formats as an interchange format,
 which allow the user to easily combine different sequence analysis tools.
 .
 This library implements the GFA1 and GFA2 specification. It is possible to
 create a Gfa object from a file in the GFA format or from scratch, to
 enumerate the graph elements (segments, links, containments, paths and header
 lines), to traverse the graph (by traversing all links outgoing from or
 incoming to a segment), to search for elements (e.g. which links connect two
 segments) and to manipulate the graph (e.g. to eliminate a link or a segment
 or to duplicate a segment distributing the read counts evenly on the copies).
 .
 The GFA format can be easily extended by users by defining own custom tags
 and record types. In Gfapy, it is easy to write extensions modules, which
 allow one to define custom record types and datatypes for the parsing and
 validation of custom fields. The custom lines can be connected, using
 references, to each other and to lines of the standard record types.