freecontact 1.0.21-9 source package in Ubuntu
Changelog
freecontact (1.0.21-9) unstable; urgency=medium
* Fix override in d-shlibmove
Closes: #986524
-- Andreas Tille <email address hidden> Wed, 07 Apr 2021 17:06:42 +0200
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any all
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section |
|---|
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| freecontact_1.0.21-9.dsc | 2.4 KiB | 3a10aad012ad4c34a1438e7b8399ba7da943f0894dd09bdcbd056a3f38810c0d |
| freecontact_1.0.21.orig.tar.xz | 401.0 KiB | 513c503ace70abc3cbc12d1aff616ffd9b6564a73a584efd7435b804479bd2a8 |
| freecontact_1.0.21-9.debian.tar.xz | 6.0 KiB | 473bf101546055c1da1d3f4e217b26cd595d25070b80edefebd29e1be3e86af2 |
Available diffs
- diff from 1.0.21-8build1 (in Ubuntu) to 1.0.21-9 (568 bytes)
No changes file available.
Binary packages built by this source
- freecontact: fast protein contact predictor
FreeContact is a protein residue contact predictor optimized for speed.
Its input is a multiple sequence alignment. FreeContact can function as an
accelerated drop-in for the published contact predictors
EVfold-mfDCA of DS. Marks (2011) and
PSICOV of D. Jones (2011).
.
FreeContact is accelerated by a combination of vector instructions, multiple
threads, and faster implementation of key parts.
Depending on the alignment, 8-fold or higher speedups are possible.
.
A sufficiently large alignment is required for meaningful results.
As a minimum, an alignment with an effective (after-weighting) sequence count
bigger than the length of the query sequence should be used. Alignments with
tens of thousands of (effective) sequences are considered good input.
.
jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite
can be used to generate the alignments, for example.
.
This package contains the command line tool freecontact(1).
- freecontact-dbgsym: No summary available for freecontact-dbgsym in ubuntu impish.
No description available for freecontact-dbgsym in ubuntu impish.
- libfreecontact-dev: No summary available for libfreecontact-dev in ubuntu impish.
No description available for libfreecontact-dev in ubuntu impish.
- libfreecontact-doc: documentation for libfreecontact
FreeContact is a protein residue contact predictor optimized for speed.
Its input is a multiple sequence alignment. FreeContact can function as an
accelerated drop-in for the published contact predictors
EVfold-mfDCA of DS. Marks (2011) and
PSICOV of D. Jones (2011).
.
FreeContact is accelerated by a combination of vector instructions, multiple
threads, and faster implementation of key parts.
Depending on the alignment, 8-fold or higher speedups are possible.
.
A sufficiently large alignment is required for meaningful results.
As a minimum, an alignment with an effective (after-weighting) sequence count
bigger than the length of the query sequence should be used. Alignments with
tens of thousands of (effective) sequences are considered good input.
.
jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite
can be used to generate the alignments, for example.
.
This package contains HTML documentation for libfreecontact.
- libfreecontact0v5: fast protein contact predictor library
FreeContact is a protein residue contact predictor optimized for speed.
Its input is a multiple sequence alignment. FreeContact can function as an
accelerated drop-in for the published contact predictors
EVfold-mfDCA of DS. Marks (2011) and
PSICOV of D. Jones (2011).
.
FreeContact is accelerated by a combination of vector instructions, multiple
threads, and faster implementation of key parts.
Depending on the alignment, 8-fold or higher speedups are possible.
.
A sufficiently large alignment is required for meaningful results.
As a minimum, an alignment with an effective (after-weighting) sequence count
bigger than the length of the query sequence should be used. Alignments with
tens of thousands of (effective) sequences are considered good input.
.
jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite
can be used to generate the alignments, for example.
.
This package contains the shared library implementing freecontact.
- libfreecontact0v5-dbgsym: debug symbols for libfreecontact0v5
