freecontact 1.0.21-6build2 source package in Ubuntu
Changelog
freecontact (1.0.21-6build2) bionic; urgency=medium * No-change rebuild for libxerces soname change. -- Matthias Klose <email address hidden> Thu, 16 Nov 2017 13:05:05 +0000
Upload details
- Uploaded by:
- Matthias Klose
- Uploaded to:
- Bionic
- Original maintainer:
- Debian Med
- Architectures:
- any all
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
Series | Published | Component | Section | |
---|---|---|---|---|
Bionic | release | universe | misc |
Downloads
File | Size | SHA-256 Checksum |
---|---|---|
freecontact_1.0.21.orig.tar.xz | 401.0 KiB | 513c503ace70abc3cbc12d1aff616ffd9b6564a73a584efd7435b804479bd2a8 |
freecontact_1.0.21-6build2.debian.tar.xz | 5.5 KiB | 1de036ce62caeb26b10366356071dcec77af7f1bd8ef62238d3feea7d0ae5633 |
freecontact_1.0.21-6build2.dsc | 2.4 KiB | 3d00b85b5dde322e324dad19714a71d8ab35b6f3b01baea74759029f9b15faba |
Available diffs
- diff from 1.0.21-6build1 to 1.0.21-6build2 (310 bytes)
Binary packages built by this source
- freecontact: fast protein contact predictor
FreeContact is a protein residue contact predictor optimized for speed.
Its input is a multiple sequence alignment. FreeContact can function as an
accelerated drop-in for the published contact predictors
EVfold-mfDCA of DS. Marks (2011) and
PSICOV of D. Jones (2011).
.
FreeContact is accelerated by a combination of vector instructions, multiple
threads, and faster implementation of key parts.
Depending on the alignment, 8-fold or higher speedups are possible.
.
A sufficiently large alignment is required for meaningful results.
As a minimum, an alignment with an effective (after-weighting) sequence count
bigger than the length of the query sequence should be used. Alignments with
tens of thousands of (effective) sequences are considered good input.
.
jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite
can be used to generate the alignments, for example.
.
This package contains the command line tool freecontact(1).
- freecontact-dbgsym: debug symbols for freecontact
- libfreecontact-dev: fast protein contact predictor library - development files
FreeContact is a protein residue contact predictor optimized for speed.
Its input is a multiple sequence alignment. FreeContact can function as an
accelerated drop-in for the published contact predictors
EVfold-mfDCA of DS. Marks (2011) and
PSICOV of D. Jones (2011).
.
FreeContact is accelerated by a combination of vector instructions, multiple
threads, and faster implementation of key parts.
Depending on the alignment, 8-fold or higher speedups are possible.
.
A sufficiently large alignment is required for meaningful results.
As a minimum, an alignment with an effective (after-weighting) sequence count
bigger than the length of the query sequence should be used. Alignments with
tens of thousands of (effective) sequences are considered good input.
.
jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite
can be used to generate the alignments, for example.
.
This package contains files necessary for developing applications with
libfreecontact.
- libfreecontact-doc: No summary available for libfreecontact-doc in ubuntu cosmic.
No description available for libfreecontact-doc in ubuntu cosmic.
- libfreecontact0v5: fast protein contact predictor library
FreeContact is a protein residue contact predictor optimized for speed.
Its input is a multiple sequence alignment. FreeContact can function as an
accelerated drop-in for the published contact predictors
EVfold-mfDCA of DS. Marks (2011) and
PSICOV of D. Jones (2011).
.
FreeContact is accelerated by a combination of vector instructions, multiple
threads, and faster implementation of key parts.
Depending on the alignment, 8-fold or higher speedups are possible.
.
A sufficiently large alignment is required for meaningful results.
As a minimum, an alignment with an effective (after-weighting) sequence count
bigger than the length of the query sequence should be used. Alignments with
tens of thousands of (effective) sequences are considered good input.
.
jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite
can be used to generate the alignments, for example.
.
This package contains the shared library implementing freecontact.
- libfreecontact0v5-dbgsym: debug symbols for libfreecontact0v5