https://launchpad.net/ubuntu/+source/freebayes/1.3.2-3/+build/19389661
RUN: /usr/share/launchpad-buildd/bin/builder-prep 
Kernel version: Linux lgw01-amd64-011 4.4.0-179-generic #209-Ubuntu SMP Fri Apr 24 17:48:44 UTC 2020 x86_64
Buildd toolchain package versions: launchpad-buildd_189 python-lpbuildd_189 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.9 dpkg-dev_1.18.4ubuntu1.6 python-debian_0.1.27ubuntu2.
Syncing the system clock with the buildd NTP service...
 1 Jun 11:10:55 ntpdate[1906]: adjust time server 10.211.37.1 offset 0.000579 sec
RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=groovy --arch=amd64 PACKAGEBUILD-19389661 --image-type chroot /home/buildd/filecache-default/7f6882774d93a6ce12d34cd2f4e4b83a707bcc6e
Creating target for build PACKAGEBUILD-19389661
RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=groovy --arch=amd64 PACKAGEBUILD-19389661
Starting target for build PACKAGEBUILD-19389661
RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=groovy --arch=amd64 PACKAGEBUILD-19389661 'deb http://ftpmaster.internal/ubuntu groovy main universe' 'deb http://ftpmaster.internal/ubuntu groovy-security main universe' 'deb http://ftpmaster.internal/ubuntu groovy-updates main universe' 'deb http://ftpmaster.internal/ubuntu groovy-proposed main universe'
Overriding sources.list in build-PACKAGEBUILD-19389661
RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=groovy --arch=amd64 PACKAGEBUILD-19389661
Updating target for build PACKAGEBUILD-19389661
Get:1 http://ftpmaster.internal/ubuntu groovy InRelease [268 kB]
Get:2 http://ftpmaster.internal/ubuntu groovy-security InRelease [89.1 kB]
Get:3 http://ftpmaster.internal/ubuntu groovy-updates InRelease [89.1 kB]
Get:4 http://ftpmaster.internal/ubuntu groovy-proposed InRelease [119 kB]
Get:5 http://ftpmaster.internal/ubuntu groovy/main amd64 Packages [971 kB]
Get:6 http://ftpmaster.internal/ubuntu groovy/main Translation-en [507 kB]
Get:7 http://ftpmaster.internal/ubuntu groovy/universe amd64 Packages [8731 kB]
Get:8 http://ftpmaster.internal/ubuntu groovy/universe Translation-en [5180 kB]
Get:9 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 Packages [48.9 kB]
Get:10 http://ftpmaster.internal/ubuntu groovy-proposed/main Translation-en [25.6 kB]
Get:11 http://ftpmaster.internal/ubuntu groovy-proposed/universe amd64 Packages [464 kB]
Get:12 http://ftpmaster.internal/ubuntu groovy-proposed/universe Translation-en [285 kB]
Fetched 16.8 MB in 4s (3871 kB/s)
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
Calculating upgrade...
The following packages will be upgraded:
  apt base-files binutils binutils-common binutils-x86-64-linux-gnu bsdutils
  bzip2 cpp-9 dash debconf debianutils e2fsprogs fdisk g++-9 gcc-10-base gcc-9
  gcc-9-base gpg gpg-agent gpgconf gpgv gzip libacl1 libapparmor1
  libapt-pkg6.0 libasan5 libatomic1 libbinutils libblkid1 libbz2-1.0 libcap2
  libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0
  libctf0 libdevmapper1.02.1 libext2fs2 libfdisk1 libgcc-9-dev libgcc-s1
  libgomp1 libidn2-0 libitm1 libkmod2 liblsan0 libmount1 libncurses6
  libncursesw6 libperl5.30 libprocps8 libquadmath0 libseccomp2 libsmartcols1
  libsqlite3-0 libss2 libstdc++-9-dev libstdc++6 libsystemd0 libtinfo6
  libtsan0 libubsan1 libudev1 libunistring2 libuuid1 linux-libc-dev login
  logsave make mount ncurses-base ncurses-bin passwd perl perl-base
  perl-modules-5.30 procps systemd systemd-sysv systemd-timesyncd
  sysvinit-utils tzdata util-linux
85 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Need to get 56.5 MB of archives.
After this operation, 531 kB of additional disk space will be used.
Get:1 http://ftpmaster.internal/ubuntu groovy/main amd64 libcrypt-dev amd64 1:4.4.15-1ubuntu1 [104 kB]
Get:2 http://ftpmaster.internal/ubuntu groovy/main amd64 libcrypt1 amd64 1:4.4.15-1ubuntu1 [78.2 kB]
Get:3 http://ftpmaster.internal/ubuntu groovy/main amd64 base-files amd64 11ubuntu7 [60.1 kB]
Get:4 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 bsdutils amd64 1:2.35.1-5ubuntu2 [86.8 kB]
Get:5 http://ftpmaster.internal/ubuntu groovy/main amd64 debianutils amd64 4.11 [85.6 kB]
Get:6 http://ftpmaster.internal/ubuntu groovy/main amd64 perl-modules-5.30 all 5.30.2-1 [2740 kB]
Get:7 http://ftpmaster.internal/ubuntu groovy/main amd64 libperl5.30 amd64 5.30.2-1 [3952 kB]
Get:8 http://ftpmaster.internal/ubuntu groovy/main amd64 perl amd64 5.30.2-1 [224 kB]
Get:9 http://ftpmaster.internal/ubuntu groovy/main amd64 perl-base amd64 5.30.2-1 [1513 kB]
Get:10 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 bzip2 amd64 1.0.8-3 [33.4 kB]
Get:11 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libbz2-1.0 amd64 1.0.8-3 [32.3 kB]
Get:12 http://ftpmaster.internal/ubuntu groovy/main amd64 debconf all 1.5.74 [121 kB]
Get:13 http://ftpmaster.internal/ubuntu groovy/main amd64 dash amd64 0.5.10.2-7 [86.3 kB]
Get:14 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 gzip amd64 1.10-2ubuntu1 [95.0 kB]
Get:15 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 login amd64 1:4.8.1-1ubuntu6 [221 kB]
Get:16 http://ftpmaster.internal/ubuntu groovy/main amd64 ncurses-bin amd64 6.2-1 [172 kB]
Get:17 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libblkid1 amd64 2.35.1-5ubuntu2 [133 kB]
Get:18 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libuuid1 amd64 2.35.1-5ubuntu2 [22.2 kB]
Get:19 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libfdisk1 amd64 2.35.1-5ubuntu2 [171 kB]
Get:20 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libmount1 amd64 2.35.1-5ubuntu2 [145 kB]
Get:21 http://ftpmaster.internal/ubuntu groovy/main amd64 libncurses6 amd64 6.2-1 [101 kB]
Get:22 http://ftpmaster.internal/ubuntu groovy/main amd64 libncursesw6 amd64 6.2-1 [132 kB]
Get:23 http://ftpmaster.internal/ubuntu groovy/main amd64 libtinfo6 amd64 6.2-1 [87.1 kB]
Get:24 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libsmartcols1 amd64 2.35.1-5ubuntu2 [95.7 kB]
Get:25 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 fdisk amd64 2.35.1-5ubuntu2 [123 kB]
Get:26 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 util-linux amd64 2.35.1-5ubuntu2 [1050 kB]
Get:27 http://ftpmaster.internal/ubuntu groovy/main amd64 ncurses-base all 6.2-1 [18.7 kB]
Get:28 http://ftpmaster.internal/ubuntu groovy/main amd64 sysvinit-utils amd64 2.96-3ubuntu1 [20.6 kB]
Get:29 http://ftpmaster.internal/ubuntu groovy/main amd64 libatomic1 amd64 10.1.0-3ubuntu1 [9280 B]
Get:30 http://ftpmaster.internal/ubuntu groovy/main amd64 libubsan1 amd64 10.1.0-3ubuntu1 [136 kB]
Get:31 http://ftpmaster.internal/ubuntu groovy/main amd64 libtsan0 amd64 10.1.0-3ubuntu1 [320 kB]
Get:32 http://ftpmaster.internal/ubuntu groovy/main amd64 libquadmath0 amd64 10.1.0-3ubuntu1 [146 kB]
Get:33 http://ftpmaster.internal/ubuntu groovy/main amd64 liblsan0 amd64 10.1.0-3ubuntu1 [144 kB]
Get:34 http://ftpmaster.internal/ubuntu groovy/main amd64 libitm1 amd64 10.1.0-3ubuntu1 [26.3 kB]
Get:35 http://ftpmaster.internal/ubuntu groovy/main amd64 libgomp1 amd64 10.1.0-3ubuntu1 [101 kB]
Get:36 http://ftpmaster.internal/ubuntu groovy/main amd64 gcc-10-base amd64 10.1.0-3ubuntu1 [20.0 kB]
Get:37 http://ftpmaster.internal/ubuntu groovy/main amd64 libgcc-s1 amd64 10.1.0-3ubuntu1 [41.5 kB]
Get:38 http://ftpmaster.internal/ubuntu groovy/main amd64 libcc1-0 amd64 10.1.0-3ubuntu1 [41.2 kB]
Get:39 http://ftpmaster.internal/ubuntu groovy/main amd64 libstdc++6 amd64 10.1.0-3ubuntu1 [502 kB]
Get:40 http://ftpmaster.internal/ubuntu groovy/main amd64 systemd-sysv amd64 245.5-3ubuntu1 [10.3 kB]
Get:41 http://ftpmaster.internal/ubuntu groovy/main amd64 systemd-timesyncd amd64 245.5-3ubuntu1 [27.9 kB]
Get:42 http://ftpmaster.internal/ubuntu groovy/main amd64 libacl1 amd64 2.2.53-8 [18.9 kB]
Get:43 http://ftpmaster.internal/ubuntu groovy/main amd64 libapparmor1 amd64 2.13.3-7ubuntu6 [34.3 kB]
Get:44 http://ftpmaster.internal/ubuntu groovy/main amd64 libcap2 amd64 1:2.34-2 [17.9 kB]
Get:45 http://ftpmaster.internal/ubuntu groovy/main amd64 libudev1 amd64 245.5-3ubuntu1 [74.6 kB]
Get:46 http://ftpmaster.internal/ubuntu groovy/main amd64 libdevmapper1.02.1 amd64 2:1.02.167-1ubuntu3 [127 kB]
Get:47 http://ftpmaster.internal/ubuntu groovy/main amd64 libcryptsetup12 amd64 2:2.3.1-1ubuntu1 [192 kB]
Get:48 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libunistring2 amd64 0.9.10-3 [369 kB]
Get:49 http://ftpmaster.internal/ubuntu groovy/main amd64 libidn2-0 amd64 2.3.0-1 [52.6 kB]
Get:50 http://ftpmaster.internal/ubuntu groovy/main amd64 libkmod2 amd64 27+20200310-2ubuntu1 [44.1 kB]
Get:51 http://ftpmaster.internal/ubuntu groovy/main amd64 libseccomp2 amd64 2.4.3-1ubuntu2 [42.0 kB]
Get:52 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 mount amd64 2.35.1-5ubuntu2 [118 kB]
Get:53 http://ftpmaster.internal/ubuntu groovy/main amd64 systemd amd64 245.5-3ubuntu1 [3798 kB]
Get:54 http://ftpmaster.internal/ubuntu groovy/main amd64 libsystemd0 amd64 245.5-3ubuntu1 [267 kB]
Get:55 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libapt-pkg6.0 amd64 2.1.5 [841 kB]
Get:56 http://ftpmaster.internal/ubuntu groovy/main amd64 gpgv amd64 2.2.20-1ubuntu1 [200 kB]
Get:57 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 apt amd64 2.1.5 [1289 kB]
Get:58 http://ftpmaster.internal/ubuntu groovy/main amd64 logsave amd64 1.45.6-1ubuntu1 [10.3 kB]
Get:59 http://ftpmaster.internal/ubuntu groovy/main amd64 libext2fs2 amd64 1.45.6-1ubuntu1 [184 kB]
Get:60 http://ftpmaster.internal/ubuntu groovy/main amd64 e2fsprogs amd64 1.45.6-1ubuntu1 [529 kB]
Get:61 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 passwd amd64 1:4.8.1-1ubuntu6 [797 kB]
Get:62 http://ftpmaster.internal/ubuntu groovy/main amd64 libcom-err2 amd64 1.45.6-1ubuntu1 [9664 B]
Get:63 http://ftpmaster.internal/ubuntu groovy/main amd64 libprocps8 amd64 2:3.3.16-4ubuntu1 [32.9 kB]
Get:64 http://ftpmaster.internal/ubuntu groovy/main amd64 libss2 amd64 1.45.6-1ubuntu1 [11.3 kB]
Get:65 http://ftpmaster.internal/ubuntu groovy/main amd64 procps amd64 2:3.3.16-4ubuntu1 [232 kB]
Get:66 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libsqlite3-0 amd64 3.32.1-1 [550 kB]
Get:67 http://ftpmaster.internal/ubuntu groovy/main amd64 tzdata all 2020a-0ubuntu1 [293 kB]
Get:68 http://ftpmaster.internal/ubuntu groovy/main amd64 libctf0 amd64 2.34-7ubuntu1 [46.6 kB]
Get:69 http://ftpmaster.internal/ubuntu groovy/main amd64 binutils-x86-64-linux-gnu amd64 2.34-7ubuntu1 [1613 kB]
Get:70 http://ftpmaster.internal/ubuntu groovy/main amd64 libbinutils amd64 2.34-7ubuntu1 [474 kB]
Get:71 http://ftpmaster.internal/ubuntu groovy/main amd64 binutils amd64 2.34-7ubuntu1 [3376 B]
Get:72 http://ftpmaster.internal/ubuntu groovy/main amd64 binutils-common amd64 2.34-7ubuntu1 [207 kB]
Get:73 http://ftpmaster.internal/ubuntu groovy/main amd64 libctf-nobfd0 amd64 2.34-7ubuntu1 [47.2 kB]
Get:74 http://ftpmaster.internal/ubuntu groovy/main amd64 libasan5 amd64 9.3.0-13ubuntu1 [395 kB]
Get:75 http://ftpmaster.internal/ubuntu groovy/main amd64 g++-9 amd64 9.3.0-13ubuntu1 [8403 kB]
Get:76 http://ftpmaster.internal/ubuntu groovy/main amd64 gcc-9 amd64 9.3.0-13ubuntu1 [8239 kB]
Get:77 http://ftpmaster.internal/ubuntu groovy/main amd64 libstdc++-9-dev amd64 9.3.0-13ubuntu1 [1714 kB]
Get:78 http://ftpmaster.internal/ubuntu groovy/main amd64 libgcc-9-dev amd64 9.3.0-13ubuntu1 [2360 kB]
Get:79 http://ftpmaster.internal/ubuntu groovy/main amd64 cpp-9 amd64 9.3.0-13ubuntu1 [7490 kB]
Get:80 http://ftpmaster.internal/ubuntu groovy/main amd64 gcc-9-base amd64 9.3.0-13ubuntu1 [19.6 kB]
Get:81 http://ftpmaster.internal/ubuntu groovy/main amd64 gpg amd64 2.2.20-1ubuntu1 [485 kB]
Get:82 http://ftpmaster.internal/ubuntu groovy/main amd64 gpgconf amd64 2.2.20-1ubuntu1 [124 kB]
Get:83 http://ftpmaster.internal/ubuntu groovy/main amd64 gpg-agent amd64 2.2.20-1ubuntu1 [232 kB]
Get:84 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 linux-libc-dev amd64 5.4.0-33.37 [1096 kB]
Get:85 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 make amd64 4.3-1 [168 kB]
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Current default time zone: 'Etc/UTC'
Local time is now:      Mon Jun  1 11:11:54 UTC 2020.
Universal Time is now:  Mon Jun  1 11:11:54 UTC 2020.
Run 'dpkg-reconfigure tzdata' if you wish to change it.

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RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-19389661 amd64 groovy-proposed -c chroot:build-PACKAGEBUILD-19389661 --arch=amd64 --dist=groovy-proposed --nolog -A freebayes_1.3.2-3.dsc
Initiating build PACKAGEBUILD-19389661 with 4 jobs across 4 processor cores.
Kernel reported to sbuild: 4.4.0-179-generic #209-Ubuntu SMP Fri Apr 24 17:48:44 UTC 2020 x86_64
sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lgw01-amd64-011.buildd

+==============================================================================+
| freebayes 1.3.2-3 (amd64)                                  01 Jun 2020 11:11 |
+==============================================================================+

Package: freebayes
Version: 1.3.2-3
Source Version: 1.3.2-3
Distribution: groovy-proposed
Machine Architecture: amd64
Host Architecture: amd64
Build Architecture: amd64

I: NOTICE: Log filtering will replace 'build/freebayes-g9pCbz/freebayes-1.3.2' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/freebayes-g9pCbz' with '<<BUILDDIR>>'
I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-19389661/chroot-autobuild' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Local sources
-------------

freebayes_1.3.2-3.dsc exists in .; copying to chroot

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+------------------------------------------------------------------------------+
| Install core build dependencies (apt-based resolver)                         |
+------------------------------------------------------------------------------+

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Filtered Build-Depends: debhelper-compat (= 13), cmake, pkg-config, python3, zlib1g-dev, libbamtools-dev, libvcflib-dev (>= 1.0.0~rc2+dfsg-3~), libtabixpp-dev, libseqlib-dev (>= 1.1.2+dfsg-5), bc, samtools, parallel, libvcflib-tools (>= 1.0.0~rc1+dfsg1-6)
dpkg-deb: building package 'sbuild-build-depends-freebayes-dummy' in '/<<BUILDDIR>>/resolver-akiaIA/apt_archive/sbuild-build-depends-freebayes-dummy.deb'.
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+------------------------------------------------------------------------------+
| Install freebayes build dependencies (apt-based resolver)                    |
+------------------------------------------------------------------------------+

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bc bsdmainutils cmake cmake-data
  debhelper dh-autoreconf dh-strip-nondeterminism dwz file fontconfig
  fontconfig-config fonts-dejavu-core gettext gettext-base groff-base
  intltool-debian libarchive-zip-perl libarchive13 libasn1-8-heimdal
  libbamtools-dev libbamtools2.5.1 libblas3 libbrotli1 libbsd0 libbwa-dev
  libcairo2 libcroco3 libcurl3-gnutls libcurl4 libdatrie1 libdebhelper-perl
  libdeflate0 libdisorder-dev libdisorder0 libelf1 libexpat1 libfastahack-dev
  libfastahack0 libfile-stripnondeterminism-perl libfml-dev libfml0
  libfontconfig1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0
  libgraphite2-3 libgssapi-krb5-2 libgssapi3-heimdal libharfbuzz0b
  libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhts-dev
  libhts3 libhx509-5-heimdal libice6 libicu66 libjbig0 libjpeg-turbo8 libjpeg8
  libjsoncpp-dev libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-26-heimdal
  libkrb5-3 libkrb5support0 liblapack3 libldap-2.4-2 libldap-common
  liblzma-dev libmagic-mgc libmagic1 libmpdec2 libnghttp2-14 libpango-1.0-0
  libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpipeline1
  libpixman-1-0 libpsl5 libpython3-stdlib libpython3.8-minimal
  libpython3.8-stdlib librhash0 libroken18-heimdal librtmp1 libsasl2-2
  libsasl2-modules-db libsensors-config libsensors5 libseqlib-dev libseqlib1
  libsigsegv2 libsm6 libsmithwaterman-dev libsmithwaterman0 libssh-4
  libssw-dev libssw0 libsub-override-perl libtabixpp-dev libtabixpp0 libtcl8.6
  libthai-data libthai0 libtiff5 libtk8.6 libtool libuchardet0 libuv1
  libvcflib-dev libvcflib-tools libvcflib1 libwebp6 libwind0-heimdal libx11-6
  libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6
  libxft2 libxml2 libxrender1 libxss1 libxt6 littler m4 man-db mime-support
  parallel pkg-config po-debconf python3 python3-minimal python3.8
  python3.8-minimal r-base-core r-cran-assertthat r-cran-backports
  r-cran-callr r-cran-cli r-cran-colorspace r-cran-crayon r-cran-desc
  r-cran-digest r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver
  r-cran-ggplot2 r-cran-glue r-cran-gridbase r-cran-gtable r-cran-isoband
  r-cran-labeling r-cran-lattice r-cran-lifecycle r-cran-littler
  r-cran-magrittr r-cran-mass r-cran-matrix r-cran-mgcv r-cran-munsell
  r-cran-nlme r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten
  r-cran-pkgload r-cran-plyr r-cran-praise r-cran-prettyunits r-cran-processx
  r-cran-ps r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rlang
  r-cran-rprojroot r-cran-rstudioapi r-cran-scales r-cran-testthat
  r-cran-tibble r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-withr
  samtools sysstat ucf unzip x11-common xdg-utils zip zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
  vacation cmake-doc ninja-build dh-make gettext-doc libasprintf-dev
  libgettextpo-dev groff lrzip libbamtools-doc krb5-doc krb5-user liblzma-doc
  lm-sensors tcl8.6 tk8.6 libtool-doc gfortran | fortran95-compiler gcj-jdk
  r-cran-pracma m4-doc apparmor less www-browser libmail-box-perl python3-doc
  python3-tk python3-venv python3.8-venv python3.8-doc binfmt-support elpa-ess
  r-doc-info | r-doc-pdf r-mathlib r-base-html r-cran-covr r-cran-htmlwidgets
  r-cran-knitr r-cran-rmarkdown r-cran-prettycode r-cran-kernsmooth
  r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-shiny r-cran-shinyjs
  r-cran-dplyr r-cran-png r-cran-jpeg r-cran-viridis r-cran-unitizer
  r-cran-hmisc r-cran-maps r-cran-maptools r-cran-multcomp r-cran-quantreg
  r-cran-rpart r-cran-sf r-cran-svglite r-cran-dbi r-cran-rsqlite
  r-cran-r.utils r-cran-forcats r-cran-stringr r-cran-magick r-cran-getopt
  r-cran-bitops r-cran-doparallel r-cran-foreach r-cran-iterators
  r-cran-itertools r-cran-curl r-cran-inline r-cran-mockr r-cran-dichromat
  r-cran-devtools r-cran-usethis r-cran-bit64 r-cran-blob r-cran-hms
  r-cran-htmltools r-cran-purrr r-cran-tidyr r-cran-zeallot isag
Recommended packages:
  curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
  xdg-user-dirs krb5-locales publicsuffix libsasl2-modules libltdl-dev
  libmail-sendmail-perl r-recommended r-base-dev r-doc-html r-cran-cliapp
  r-cran-mockery r-cran-sp r-cran-mapproj r-cran-hexbin r-cran-vdiffr
  r-cran-lubridate r-cran-domc r-cran-abind r-cran-codetools r-cran-curl
  r-cran-rmarkdown r-cran-bit64 r-cran-hms r-cran-xml2 r-cran-data.table
  r-cran-rsqlite r-cran-knitr r-cran-dplyr r-cran-mockr r-cran-generics
  r-cran-dbi cwltool cron | cron-daemon libfile-mimeinfo-perl libnet-dbus-perl
  libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bc bsdmainutils cmake cmake-data
  debhelper dh-autoreconf dh-strip-nondeterminism dwz file fontconfig
  fontconfig-config fonts-dejavu-core gettext gettext-base groff-base
  intltool-debian libarchive-zip-perl libarchive13 libasn1-8-heimdal
  libbamtools-dev libbamtools2.5.1 libblas3 libbrotli1 libbsd0 libbwa-dev
  libcairo2 libcroco3 libcurl3-gnutls libcurl4 libdatrie1 libdebhelper-perl
  libdeflate0 libdisorder-dev libdisorder0 libelf1 libexpat1 libfastahack-dev
  libfastahack0 libfile-stripnondeterminism-perl libfml-dev libfml0
  libfontconfig1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0
  libgraphite2-3 libgssapi-krb5-2 libgssapi3-heimdal libharfbuzz0b
  libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhts-dev
  libhts3 libhx509-5-heimdal libice6 libicu66 libjbig0 libjpeg-turbo8 libjpeg8
  libjsoncpp-dev libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-26-heimdal
  libkrb5-3 libkrb5support0 liblapack3 libldap-2.4-2 libldap-common
  liblzma-dev libmagic-mgc libmagic1 libmpdec2 libnghttp2-14 libpango-1.0-0
  libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpipeline1
  libpixman-1-0 libpsl5 libpython3-stdlib libpython3.8-minimal
  libpython3.8-stdlib librhash0 libroken18-heimdal librtmp1 libsasl2-2
  libsasl2-modules-db libsensors-config libsensors5 libseqlib-dev libseqlib1
  libsigsegv2 libsm6 libsmithwaterman-dev libsmithwaterman0 libssh-4
  libssw-dev libssw0 libsub-override-perl libtabixpp-dev libtabixpp0 libtcl8.6
  libthai-data libthai0 libtiff5 libtk8.6 libtool libuchardet0 libuv1
  libvcflib-dev libvcflib-tools libvcflib1 libwebp6 libwind0-heimdal libx11-6
  libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6
  libxft2 libxml2 libxrender1 libxss1 libxt6 littler m4 man-db mime-support
  parallel pkg-config po-debconf python3 python3-minimal python3.8
  python3.8-minimal r-base-core r-cran-assertthat r-cran-backports
  r-cran-callr r-cran-cli r-cran-colorspace r-cran-crayon r-cran-desc
  r-cran-digest r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver
  r-cran-ggplot2 r-cran-glue r-cran-gridbase r-cran-gtable r-cran-isoband
  r-cran-labeling r-cran-lattice r-cran-lifecycle r-cran-littler
  r-cran-magrittr r-cran-mass r-cran-matrix r-cran-mgcv r-cran-munsell
  r-cran-nlme r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten
  r-cran-pkgload r-cran-plyr r-cran-praise r-cran-prettyunits r-cran-processx
  r-cran-ps r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rlang
  r-cran-rprojroot r-cran-rstudioapi r-cran-scales r-cran-testthat
  r-cran-tibble r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-withr
  samtools sbuild-build-depends-freebayes-dummy sysstat ucf unzip x11-common
  xdg-utils zip zlib1g-dev
0 upgraded, 207 newly installed, 0 to remove and 0 not upgraded.
Need to get 101 MB of archives.
After this operation, 278 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-akiaIA/apt_archive ./ sbuild-build-depends-freebayes-dummy 0.invalid.0 [968 B]
Get:2 http://ftpmaster.internal/ubuntu groovy/main amd64 libpython3.8-minimal amd64 3.8.3-1 [714 kB]
Get:3 http://ftpmaster.internal/ubuntu groovy/main amd64 libexpat1 amd64 2.2.9-1build1 [73.3 kB]
Get:4 http://ftpmaster.internal/ubuntu groovy/main amd64 python3.8-minimal amd64 3.8.3-1 [1897 kB]
Get:5 http://ftpmaster.internal/ubuntu groovy/main amd64 python3-minimal amd64 3.8.2-0ubuntu2 [23.6 kB]
Get:6 http://ftpmaster.internal/ubuntu groovy/main amd64 mime-support all 3.64ubuntu1 [30.6 kB]
Get:7 http://ftpmaster.internal/ubuntu groovy/main amd64 libmpdec2 amd64 2.4.2-3 [81.1 kB]
Get:8 http://ftpmaster.internal/ubuntu groovy/main amd64 libpython3.8-stdlib amd64 3.8.3-1 [1668 kB]
Get:9 http://ftpmaster.internal/ubuntu groovy/main amd64 python3.8 amd64 3.8.3-1 [369 kB]
Get:10 http://ftpmaster.internal/ubuntu groovy/main amd64 libpython3-stdlib amd64 3.8.2-0ubuntu2 [7068 B]
Get:11 http://ftpmaster.internal/ubuntu groovy/main amd64 python3 amd64 3.8.2-0ubuntu2 [47.6 kB]
Get:12 http://ftpmaster.internal/ubuntu groovy/main amd64 libbsd0 amd64 0.10.0-1 [45.4 kB]
Get:13 http://ftpmaster.internal/ubuntu groovy/main amd64 bsdmainutils amd64 11.1.2ubuntu3 [181 kB]
Get:14 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libuchardet0 amd64 0.0.7-1 [68.0 kB]
Get:15 http://ftpmaster.internal/ubuntu groovy/main amd64 groff-base amd64 1.22.4-5 [847 kB]
Get:16 http://ftpmaster.internal/ubuntu groovy/main amd64 libpipeline1 amd64 1.5.2-2build1 [27.7 kB]
Get:17 http://ftpmaster.internal/ubuntu groovy/main amd64 man-db amd64 2.9.1-1 [1112 kB]
Get:18 http://ftpmaster.internal/ubuntu groovy/main amd64 libmagic-mgc amd64 1:5.38-5 [218 kB]
Get:19 http://ftpmaster.internal/ubuntu groovy/main amd64 libmagic1 amd64 1:5.38-5 [76.0 kB]
Get:20 http://ftpmaster.internal/ubuntu groovy/main amd64 file amd64 1:5.38-5 [23.3 kB]
Get:21 http://ftpmaster.internal/ubuntu groovy/main amd64 libelf1 amd64 0.176-1.1build1 [44.0 kB]
Get:22 http://ftpmaster.internal/ubuntu groovy/main amd64 libfribidi0 amd64 1.0.8-2 [23.8 kB]
Get:23 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libglib2.0-0 amd64 2.64.3-1 [1285 kB]
Get:24 http://ftpmaster.internal/ubuntu groovy/main amd64 libicu66 amd64 66.1-2ubuntu2 [8520 kB]
Get:25 http://ftpmaster.internal/ubuntu groovy/main amd64 libxml2 amd64 2.9.10+dfsg-5 [640 kB]
Get:26 http://ftpmaster.internal/ubuntu groovy/main amd64 ucf all 3.0042 [56.0 kB]
Get:27 http://ftpmaster.internal/ubuntu groovy/main amd64 gettext-base amd64 0.19.8.1-10build1 [50.2 kB]
Get:28 http://ftpmaster.internal/ubuntu groovy/main amd64 libkrb5support0 amd64 1.17-6ubuntu4 [30.9 kB]
Get:29 http://ftpmaster.internal/ubuntu groovy/main amd64 libk5crypto3 amd64 1.17-6ubuntu4 [80.2 kB]
Get:30 http://ftpmaster.internal/ubuntu groovy/main amd64 libkeyutils1 amd64 1.6.1-2ubuntu1 [10.1 kB]
Get:31 http://ftpmaster.internal/ubuntu groovy/main amd64 libkrb5-3 amd64 1.17-6ubuntu4 [330 kB]
Get:32 http://ftpmaster.internal/ubuntu groovy/main amd64 libgssapi-krb5-2 amd64 1.17-6ubuntu4 [121 kB]
Get:33 http://ftpmaster.internal/ubuntu groovy/main amd64 libpsl5 amd64 0.21.0-1ubuntu1 [51.5 kB]
Get:34 http://ftpmaster.internal/ubuntu groovy/main amd64 libuv1 amd64 1.35.0-2ubuntu1 [80.4 kB]
Get:35 http://ftpmaster.internal/ubuntu groovy/main amd64 libxau6 amd64 1:1.0.9-0ubuntu1 [7488 B]
Get:36 http://ftpmaster.internal/ubuntu groovy/main amd64 libxdmcp6 amd64 1:1.1.3-0ubuntu1 [10.6 kB]
Get:37 http://ftpmaster.internal/ubuntu groovy/main amd64 libxcb1 amd64 1.14-2 [44.7 kB]
Get:38 http://ftpmaster.internal/ubuntu groovy/main amd64 libx11-data all 2:1.6.9-2ubuntu1 [113 kB]
Get:39 http://ftpmaster.internal/ubuntu groovy/main amd64 libx11-6 amd64 2:1.6.9-2ubuntu1 [573 kB]
Get:40 http://ftpmaster.internal/ubuntu groovy/main amd64 libxext6 amd64 2:1.3.4-0ubuntu1 [29.1 kB]
Get:41 http://ftpmaster.internal/ubuntu groovy/main amd64 libsigsegv2 amd64 2.12-2 [13.9 kB]
Get:42 http://ftpmaster.internal/ubuntu groovy/main amd64 m4 amd64 1.4.18-4 [199 kB]
Get:43 http://ftpmaster.internal/ubuntu groovy/main amd64 autoconf all 2.69-11.1 [321 kB]
Get:44 http://ftpmaster.internal/ubuntu groovy/main amd64 autotools-dev all 20180224.1 [39.6 kB]
Get:45 http://ftpmaster.internal/ubuntu groovy/main amd64 automake all 1:1.16.2-1ubuntu1 [521 kB]
Get:46 http://ftpmaster.internal/ubuntu groovy/main amd64 autopoint all 0.19.8.1-10build1 [412 kB]
Get:47 http://ftpmaster.internal/ubuntu groovy/main amd64 bc amd64 1.07.1-2build1 [86.3 kB]
Get:48 http://ftpmaster.internal/ubuntu groovy/main amd64 cmake-data all 3.16.3-3ubuntu1 [1612 kB]
Get:49 http://ftpmaster.internal/ubuntu groovy/main amd64 libarchive13 amd64 3.4.2-1 [328 kB]
Get:50 http://ftpmaster.internal/ubuntu groovy/main amd64 libbrotli1 amd64 1.0.7-6.1 [265 kB]
Get:51 http://ftpmaster.internal/ubuntu groovy/main amd64 libroken18-heimdal amd64 7.7.0+dfsg-2 [41.8 kB]
Get:52 http://ftpmaster.internal/ubuntu groovy/main amd64 libasn1-8-heimdal amd64 7.7.0+dfsg-2 [181 kB]
Get:53 http://ftpmaster.internal/ubuntu groovy/main amd64 libheimbase1-heimdal amd64 7.7.0+dfsg-2 [29.7 kB]
Get:54 http://ftpmaster.internal/ubuntu groovy/main amd64 libhcrypto4-heimdal amd64 7.7.0+dfsg-2 [88.0 kB]
Get:55 http://ftpmaster.internal/ubuntu groovy/main amd64 libwind0-heimdal amd64 7.7.0+dfsg-2 [47.6 kB]
Get:56 http://ftpmaster.internal/ubuntu groovy/main amd64 libhx509-5-heimdal amd64 7.7.0+dfsg-2 [107 kB]
Get:57 http://ftpmaster.internal/ubuntu groovy/main amd64 libkrb5-26-heimdal amd64 7.7.0+dfsg-2 [207 kB]
Get:58 http://ftpmaster.internal/ubuntu groovy/main amd64 libheimntlm0-heimdal amd64 7.7.0+dfsg-2 [15.1 kB]
Get:59 http://ftpmaster.internal/ubuntu groovy/main amd64 libgssapi3-heimdal amd64 7.7.0+dfsg-2 [96.5 kB]
Get:60 http://ftpmaster.internal/ubuntu groovy/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2 [14.9 kB]
Get:61 http://ftpmaster.internal/ubuntu groovy/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2 [49.3 kB]
Get:62 http://ftpmaster.internal/ubuntu groovy/main amd64 libldap-common all 2.4.49+dfsg-2ubuntu2 [17.4 kB]
Get:63 http://ftpmaster.internal/ubuntu groovy/main amd64 libldap-2.4-2 amd64 2.4.49+dfsg-2ubuntu2 [156 kB]
Get:64 http://ftpmaster.internal/ubuntu groovy/main amd64 libnghttp2-14 amd64 1.40.0-1build1 [78.7 kB]
Get:65 http://ftpmaster.internal/ubuntu groovy/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2build1 [54.9 kB]
Get:66 http://ftpmaster.internal/ubuntu groovy/main amd64 libssh-4 amd64 0.9.4-1ubuntu1 [170 kB]
Get:67 http://ftpmaster.internal/ubuntu groovy/main amd64 libcurl4 amd64 7.68.0-1ubuntu2 [233 kB]
Get:68 http://ftpmaster.internal/ubuntu groovy/main amd64 libjsoncpp1 amd64 1.7.4-3.1ubuntu2 [75.6 kB]
Get:69 http://ftpmaster.internal/ubuntu groovy/main amd64 librhash0 amd64 1.3.9-1 [113 kB]
Get:70 http://ftpmaster.internal/ubuntu groovy/main amd64 cmake amd64 3.16.3-3ubuntu1 [3666 kB]
Get:71 http://ftpmaster.internal/ubuntu groovy/main amd64 libtool all 2.4.6-14 [161 kB]
Get:72 http://ftpmaster.internal/ubuntu groovy/main amd64 dh-autoreconf all 19 [16.1 kB]
Get:73 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libdebhelper-perl all 13.1ubuntu1 [64.0 kB]
Get:74 http://ftpmaster.internal/ubuntu groovy/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB]
Get:75 http://ftpmaster.internal/ubuntu groovy/main amd64 libsub-override-perl all 0.09-2 [9532 B]
Get:76 http://ftpmaster.internal/ubuntu groovy/main amd64 libfile-stripnondeterminism-perl all 1.8.1-1 [17.1 kB]
Get:77 http://ftpmaster.internal/ubuntu groovy/main amd64 dh-strip-nondeterminism all 1.8.1-1 [5232 B]
Get:78 http://ftpmaster.internal/ubuntu groovy/main amd64 dwz amd64 0.13-5 [151 kB]
Get:79 http://ftpmaster.internal/ubuntu groovy/main amd64 libcroco3 amd64 0.6.13-1 [82.5 kB]
Get:80 http://ftpmaster.internal/ubuntu groovy/main amd64 gettext amd64 0.19.8.1-10build1 [895 kB]
Get:81 http://ftpmaster.internal/ubuntu groovy/main amd64 intltool-debian all 0.35.0+20060710.5 [24.9 kB]
Get:82 http://ftpmaster.internal/ubuntu groovy/main amd64 po-debconf all 1.0.21 [233 kB]
Get:83 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 debhelper all 13.1ubuntu1 [885 kB]
Get:84 http://ftpmaster.internal/ubuntu groovy/main amd64 libfreetype6 amd64 2.10.1-2 [341 kB]
Get:85 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 fonts-dejavu-core all 2.37-2 [1041 kB]
Get:86 http://ftpmaster.internal/ubuntu groovy/main amd64 fontconfig-config all 2.13.1-2ubuntu3 [28.8 kB]
Get:87 http://ftpmaster.internal/ubuntu groovy/main amd64 libfontconfig1 amd64 2.13.1-2ubuntu3 [114 kB]
Get:88 http://ftpmaster.internal/ubuntu groovy/main amd64 fontconfig amd64 2.13.1-2ubuntu3 [171 kB]
Get:89 http://ftpmaster.internal/ubuntu groovy/universe amd64 libbamtools2.5.1 amd64 2.5.1+dfsg-7 [158 kB]
Get:90 http://ftpmaster.internal/ubuntu groovy/universe amd64 libbamtools-dev amd64 2.5.1+dfsg-7 [210 kB]
Get:91 http://ftpmaster.internal/ubuntu groovy/main amd64 libblas3 amd64 3.9.0-2 [141 kB]
Get:92 http://ftpmaster.internal/ubuntu groovy/universe amd64 libbwa-dev amd64 0.7.17-5 [130 kB]
Get:93 http://ftpmaster.internal/ubuntu groovy/main amd64 libpixman-1-0 amd64 0.38.4-0ubuntu1 [227 kB]
Get:94 http://ftpmaster.internal/ubuntu groovy/main amd64 libxcb-render0 amd64 1.14-2 [14.8 kB]
Get:95 http://ftpmaster.internal/ubuntu groovy/main amd64 libxcb-shm0 amd64 1.14-2 [5584 B]
Get:96 http://ftpmaster.internal/ubuntu groovy/main amd64 libxrender1 amd64 1:0.9.10-1 [18.7 kB]
Get:97 http://ftpmaster.internal/ubuntu groovy/main amd64 libcairo2 amd64 1.16.0-4ubuntu1 [583 kB]
Get:98 http://ftpmaster.internal/ubuntu groovy/main amd64 libcurl3-gnutls amd64 7.68.0-1ubuntu2 [231 kB]
Get:99 http://ftpmaster.internal/ubuntu groovy/main amd64 libdatrie1 amd64 0.2.12-3 [18.7 kB]
Get:100 http://ftpmaster.internal/ubuntu groovy/universe amd64 libdeflate0 amd64 1.6-1 [54.8 kB]
Get:101 http://ftpmaster.internal/ubuntu groovy/universe amd64 libdisorder0 amd64 0.0.2+git20130809.8062ee1-1 [4308 B]
Get:102 http://ftpmaster.internal/ubuntu groovy/universe amd64 libdisorder-dev amd64 0.0.2+git20130809.8062ee1-1 [3840 B]
Get:103 http://ftpmaster.internal/ubuntu groovy/universe amd64 libfastahack0 amd64 1.0.0+dfsg-5build1 [23.7 kB]
Get:104 http://ftpmaster.internal/ubuntu groovy/universe amd64 libfastahack-dev amd64 1.0.0+dfsg-5build1 [24.2 kB]
Get:105 http://ftpmaster.internal/ubuntu groovy/universe amd64 libfml0 amd64 0.1-13 [70.4 kB]
Get:106 http://ftpmaster.internal/ubuntu groovy/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2ubuntu1 [156 kB]
Get:107 http://ftpmaster.internal/ubuntu groovy/universe amd64 libfml-dev amd64 0.1-13 [81.0 kB]
Get:108 http://ftpmaster.internal/ubuntu groovy/main amd64 libgfortran5 amd64 10.1.0-3ubuntu1 [734 kB]
Get:109 http://ftpmaster.internal/ubuntu groovy/main amd64 libgraphite2-3 amd64 1.3.14-1 [73.7 kB]
Get:110 http://ftpmaster.internal/ubuntu groovy/main amd64 libharfbuzz0b amd64 2.6.4-1ubuntu4 [391 kB]
Get:111 http://ftpmaster.internal/ubuntu groovy/universe amd64 libhts3 amd64 1.10.2-3 [349 kB]
Get:112 http://ftpmaster.internal/ubuntu groovy/main amd64 liblzma-dev amd64 5.2.4-1 [145 kB]
Get:113 http://ftpmaster.internal/ubuntu groovy/universe amd64 libhts-dev amd64 1.10.2-3 [92.0 kB]
Get:114 http://ftpmaster.internal/ubuntu groovy/main amd64 x11-common all 1:7.7+19ubuntu14 [22.3 kB]
Get:115 http://ftpmaster.internal/ubuntu groovy/main amd64 libice6 amd64 2:1.0.10-0ubuntu1 [41.0 kB]
Get:116 http://ftpmaster.internal/ubuntu groovy/main amd64 libjpeg-turbo8 amd64 2.0.3-0ubuntu1 [118 kB]
Get:117 http://ftpmaster.internal/ubuntu groovy/main amd64 libjpeg8 amd64 8c-2ubuntu8 [2194 B]
Get:118 http://ftpmaster.internal/ubuntu groovy/main amd64 liblapack3 amd64 3.9.0-2 [2156 kB]
Get:119 http://ftpmaster.internal/ubuntu groovy/main amd64 libthai-data all 0.1.28-3 [134 kB]
Get:120 http://ftpmaster.internal/ubuntu groovy/main amd64 libthai0 amd64 0.1.28-3 [18.1 kB]
Get:121 http://ftpmaster.internal/ubuntu groovy/main amd64 libpango-1.0-0 amd64 1.44.7-2ubuntu4 [162 kB]
Get:122 http://ftpmaster.internal/ubuntu groovy/main amd64 libpangoft2-1.0-0 amd64 1.44.7-2ubuntu4 [34.9 kB]
Get:123 http://ftpmaster.internal/ubuntu groovy/main amd64 libpangocairo-1.0-0 amd64 1.44.7-2ubuntu4 [24.8 kB]
Get:124 http://ftpmaster.internal/ubuntu groovy/main amd64 libpaper1 amd64 1.1.28 [13.0 kB]
Get:125 http://ftpmaster.internal/ubuntu groovy/main amd64 libpaper-utils amd64 1.1.28 [8400 B]
Get:126 http://ftpmaster.internal/ubuntu groovy/main amd64 libsensors-config all 1:3.6.0-2ubuntu1 [6092 B]
Get:127 http://ftpmaster.internal/ubuntu groovy/main amd64 libsensors5 amd64 1:3.6.0-2ubuntu1 [27.4 kB]
Get:128 http://ftpmaster.internal/ubuntu groovy/universe amd64 libssw0 amd64 1.1-9 [18.9 kB]
Get:129 http://ftpmaster.internal/ubuntu groovy/universe amd64 libseqlib1 amd64 1.1.2+dfsg-6 [122 kB]
Get:130 http://ftpmaster.internal/ubuntu groovy/main amd64 libjsoncpp-dev amd64 1.7.4-3.1ubuntu2 [91.1 kB]
Get:131 http://ftpmaster.internal/ubuntu groovy/universe amd64 libssw-dev amd64 1.1-9 [109 kB]
Get:132 http://ftpmaster.internal/ubuntu groovy/universe amd64 libseqlib-dev amd64 1.1.2+dfsg-6 [169 kB]
Get:133 http://ftpmaster.internal/ubuntu groovy/main amd64 libsm6 amd64 2:1.2.3-1 [16.1 kB]
Get:134 http://ftpmaster.internal/ubuntu groovy/universe amd64 libsmithwaterman0 amd64 0.0+git20160702.2610e25-8 [36.2 kB]
Get:135 http://ftpmaster.internal/ubuntu groovy/universe amd64 libsmithwaterman-dev amd64 0.0+git20160702.2610e25-8 [38.1 kB]
Get:136 http://ftpmaster.internal/ubuntu groovy/universe amd64 libtabixpp0 amd64 1.1.0-3 [8884 B]
Get:137 http://ftpmaster.internal/ubuntu groovy/universe amd64 libtabixpp-dev amd64 1.1.0-3 [7008 B]
Get:138 http://ftpmaster.internal/ubuntu groovy/main amd64 libtcl8.6 amd64 8.6.10+dfsg-1 [902 kB]
Get:139 http://ftpmaster.internal/ubuntu groovy/main amd64 libjbig0 amd64 2.1-3.1build1 [26.7 kB]
Get:140 http://ftpmaster.internal/ubuntu groovy/main amd64 libwebp6 amd64 0.6.1-2 [185 kB]
Get:141 http://ftpmaster.internal/ubuntu groovy/main amd64 libtiff5 amd64 4.1.0+git191117-2build1 [161 kB]
Get:142 http://ftpmaster.internal/ubuntu groovy/main amd64 libxft2 amd64 2.3.3-0ubuntu1 [39.2 kB]
Get:143 http://ftpmaster.internal/ubuntu groovy/main amd64 libxss1 amd64 1:1.2.3-1 [8140 B]
Get:144 http://ftpmaster.internal/ubuntu groovy/main amd64 libtk8.6 amd64 8.6.10-1 [714 kB]
Get:145 http://ftpmaster.internal/ubuntu groovy/universe amd64 libvcflib1 amd64 1.0.1+dfsg-3 [151 kB]
Get:146 http://ftpmaster.internal/ubuntu groovy/universe amd64 libvcflib-dev amd64 1.0.1+dfsg-3 [27.0 kB]
Get:147 http://ftpmaster.internal/ubuntu groovy/main amd64 zip amd64 3.0-11build1 [167 kB]
Get:148 http://ftpmaster.internal/ubuntu groovy/main amd64 unzip amd64 6.0-25ubuntu1 [169 kB]
Get:149 http://ftpmaster.internal/ubuntu groovy/main amd64 xdg-utils all 1.1.3-2ubuntu1 [61.6 kB]
Get:150 http://ftpmaster.internal/ubuntu groovy/main amd64 libxt6 amd64 1:1.1.5-1 [160 kB]
Get:151 http://ftpmaster.internal/ubuntu groovy-proposed/universe amd64 r-base-core amd64 4.0.0.20200528-1 [25.0 MB]
Get:152 http://ftpmaster.internal/ubuntu groovy-proposed/universe amd64 r-cran-littler amd64 0.3.9-1build1 [300 kB]
Get:153 http://ftpmaster.internal/ubuntu groovy-proposed/universe amd64 littler all 0.3.9-1build1 [2496 B]
Get:154 http://ftpmaster.internal/ubuntu groovy-proposed/universe amd64 r-cran-pkgkitten all 0.1.5-2 [22.6 kB]
Get:155 http://ftpmaster.internal/ubuntu groovy-proposed/universe amd64 r-cran-rcpp amd64 1.0.4.6-1build1 [1867 kB]
Get:156 http://ftpmaster.internal/ubuntu groovy-proposed/universe amd64 r-cran-plyr amd64 1.8.6-2build1 [830 kB]
Get:157 http://ftpmaster.internal/ubuntu groovy-proposed/universe amd64 r-cran-digest amd64 0.6.25-1build1 [170 kB]
Get:158 http://ftpmaster.internal/ubuntu groovy-proposed/universe amd64 r-cran-glue amd64 1.4.1-1build1 [134 kB]
Get:159 http://ftpmaster.internal/ubuntu groovy-proposed/universe amd64 r-cran-gtable all 0.3.0+dfsg-2build1 [138 kB]
Get:160 http://ftpmaster.internal/ubuntu groovy-proposed/universe amd64 r-cran-assertthat all 0.2.1-2build1 [56.5 kB]
Get:161 http://ftpmaster.internal/ubuntu groovy-proposed/universe amd64 r-cran-crayon all 1.3.4-4ubuntu2 [498 kB]
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Get:163 http://ftpmaster.internal/ubuntu groovy-proposed/universe amd64 r-cran-cli all 2.0.2-2build1 [398 kB]
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Get:175 http://ftpmaster.internal/ubuntu groovy-proposed/universe amd64 r-cran-prettyunits all 1.1.1-2build1 [39.6 kB]
Get:176 http://ftpmaster.internal/ubuntu groovy-proposed/universe amd64 r-cran-withr all 2.2.0-2 [198 kB]
Get:177 http://ftpmaster.internal/ubuntu groovy-proposed/universe amd64 r-cran-pkgbuild all 1.0.8-2build1 [142 kB]
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Get:180 http://ftpmaster.internal/ubuntu groovy-proposed/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB]
Get:181 http://ftpmaster.internal/ubuntu groovy-proposed/universe amd64 r-cran-testthat amd64 2.3.2-2build1 [1060 kB]
Get:182 http://ftpmaster.internal/ubuntu groovy-proposed/universe amd64 r-cran-isoband amd64 0.2.1-1build1 [2177 kB]
Get:183 http://ftpmaster.internal/ubuntu groovy-proposed/universe amd64 r-cran-mass amd64 7.3-51.6-1build1 [1113 kB]
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Get:187 http://ftpmaster.internal/ubuntu groovy-proposed/universe amd64 r-cran-mgcv amd64 1.8-31-1build1 [2704 kB]
Get:188 http://ftpmaster.internal/ubuntu groovy-proposed/universe amd64 r-cran-farver amd64 2.0.3-1build2 [1337 kB]
Get:189 http://ftpmaster.internal/ubuntu groovy-proposed/universe amd64 r-cran-labeling all 0.3-4build1 [62.3 kB]
Get:190 http://ftpmaster.internal/ubuntu groovy-proposed/universe amd64 r-cran-lifecycle all 0.2.0-2build1 [93.3 kB]
Get:191 http://ftpmaster.internal/ubuntu groovy-proposed/universe amd64 r-cran-colorspace amd64 1.4-1+dfsg-1build1 [1491 kB]
Get:192 http://ftpmaster.internal/ubuntu groovy-proposed/universe amd64 r-cran-munsell all 0.5.0-2build1 [208 kB]
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Get:194 http://ftpmaster.internal/ubuntu groovy-proposed/universe amd64 r-cran-viridislite all 0.3.0-4 [58.9 kB]
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Get:196 http://ftpmaster.internal/ubuntu groovy-proposed/universe amd64 r-cran-utf8 amd64 1.1.4-1build2 [131 kB]
Get:197 http://ftpmaster.internal/ubuntu groovy-proposed/universe amd64 r-cran-vctrs amd64 0.3.0-2build1 [928 kB]
Get:198 http://ftpmaster.internal/ubuntu groovy-proposed/universe amd64 r-cran-pillar all 1.4.4-2build1 [229 kB]
Get:199 http://ftpmaster.internal/ubuntu groovy-proposed/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB]
Get:200 http://ftpmaster.internal/ubuntu groovy-proposed/universe amd64 r-cran-tibble amd64 3.0.1-1build1 [418 kB]
Get:201 http://ftpmaster.internal/ubuntu groovy-proposed/universe amd64 r-cran-ggplot2 all 3.3.0+dfsg-2build1 [3069 kB]
Get:202 http://ftpmaster.internal/ubuntu groovy-proposed/universe amd64 r-cran-gridbase all 0.4-7-5build1 [163 kB]
Get:203 http://ftpmaster.internal/ubuntu groovy/universe amd64 libvcflib-tools amd64 1.0.1+dfsg-3 [635 kB]
Get:204 http://ftpmaster.internal/ubuntu groovy/main amd64 pkg-config amd64 0.29.2-1ubuntu1 [46.2 kB]
Get:205 http://ftpmaster.internal/ubuntu groovy/universe amd64 samtools amd64 1.10-3 [496 kB]
Get:206 http://ftpmaster.internal/ubuntu groovy/main amd64 sysstat amd64 12.3.2-1 [447 kB]
Get:207 http://ftpmaster.internal/ubuntu groovy/universe amd64 parallel all 20161222-1.1 [260 kB]
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Creating config file /etc/R/Renviron with new version
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Setting up r-cran-pkgbuild (1.0.8-2build1) ...
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Setting up dh-autoreconf (19) ...
Setting up debhelper (13.1ubuntu1) ...
Setting up sbuild-build-depends-freebayes-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.31-0ubuntu9) ...
Processing triggers for systemd (245.5-3ubuntu1) ...

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.4.0-179-generic amd64 (x86_64)
Toolchain package versions: binutils_2.34-7ubuntu1 dpkg-dev_1.19.7ubuntu3 g++-9_9.3.0-13ubuntu1 gcc-9_9.3.0-13ubuntu1 libc6-dev_2.31-0ubuntu9 libstdc++-9-dev_9.3.0-13ubuntu1 libstdc++6_10.1.0-3ubuntu1 linux-libc-dev_5.4.0-33.37
Package versions: adduser_3.118ubuntu2 advancecomp_2.1-2.1build1 apt_2.1.5 autoconf_2.69-11.1 automake_1:1.16.2-1ubuntu1 autopoint_0.19.8.1-10build1 autotools-dev_20180224.1 base-files_11ubuntu7 base-passwd_3.5.47 bash_5.0-6ubuntu1 bc_1.07.1-2build1 binutils_2.34-7ubuntu1 binutils-common_2.34-7ubuntu1 binutils-x86-64-linux-gnu_2.34-7ubuntu1 bsdmainutils_11.1.2ubuntu3 bsdutils_1:2.35.1-5ubuntu2 build-essential_12.8ubuntu1 bzip2_1.0.8-3 ca-certificates_20190110ubuntu1 cmake_3.16.3-3ubuntu1 cmake-data_3.16.3-3ubuntu1 coreutils_8.30-3ubuntu2 cpp_4:9.3.0-1ubuntu2 cpp-9_9.3.0-13ubuntu1 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13.1ubuntu1 debianutils_4.11 dh-autoreconf_19 dh-strip-nondeterminism_1.8.1-1 diffutils_1:3.7-3 dpkg_1.19.7ubuntu3 dpkg-dev_1.19.7ubuntu3 dwz_0.13-5 e2fsprogs_1.45.6-1ubuntu1 fakeroot_1.24-1 fdisk_2.35.1-5ubuntu2 file_1:5.38-5 findutils_4.7.0-1ubuntu1 fontconfig_2.13.1-2ubuntu3 fontconfig-config_2.13.1-2ubuntu3 fonts-dejavu-core_2.37-2 g++_4:9.3.0-1ubuntu2 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r-cran-isoband_0.2.1-1build1 r-cran-labeling_0.3-4build1 r-cran-lattice_0.20-41-1build1 r-cran-lifecycle_0.2.0-2build1 r-cran-littler_0.3.9-1build1 r-cran-magrittr_1.5-6build1 r-cran-mass_7.3-51.6-1build1 r-cran-matrix_1.2-18-1build1 r-cran-mgcv_1.8-31-1build1 r-cran-munsell_0.5.0-2build1 r-cran-nlme_3.1.148-1build1 r-cran-pillar_1.4.4-2build1 r-cran-pkgbuild_1.0.8-2build1 r-cran-pkgconfig_2.0.3-2build1 r-cran-pkgkitten_0.1.5-2 r-cran-pkgload_1.0.2-2build1 r-cran-plyr_1.8.6-2build1 r-cran-praise_1.0.0-4build1 r-cran-prettyunits_1.1.1-2build1 r-cran-processx_3.4.2-1build1 r-cran-ps_1.3.3-1build1 r-cran-r6_2.4.1-2build1 r-cran-rcolorbrewer_1.1-2-3 r-cran-rcpp_1.0.4.6-1build1 r-cran-rlang_0.4.6-1build1 r-cran-rprojroot_1.3-2-3build1 r-cran-rstudioapi_0.11-2 r-cran-scales_1.1.1-1build1 r-cran-testthat_2.3.2-2build1 r-cran-tibble_3.0.1-1build1 r-cran-utf8_1.1.4-1build2 r-cran-vctrs_0.3.0-2build1 r-cran-viridislite_0.3.0-4 r-cran-withr_2.2.0-2 readline-common_8.0-4 samtools_1.10-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-freebayes-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysstat_12.3.2-1 systemd_245.5-3ubuntu1 systemd-sysv_245.5-3ubuntu1 systemd-timesyncd_245.5-3ubuntu1 sysvinit-utils_2.96-3ubuntu1 tar_1.30+dfsg-7 tzdata_2020a-0ubuntu1 ubuntu-keyring_2020.02.11.2 ucf_3.0042 unzip_6.0-25ubuntu1 util-linux_2.35.1-5ubuntu2 x11-common_1:7.7+19ubuntu14 xdg-utils_1.1.3-2ubuntu1 xz-utils_5.2.4-1 zip_3.0-11build1 zlib1g_1:1.2.11.dfsg-2ubuntu1 zlib1g-dev_1:1.2.11.dfsg-2ubuntu1

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: Signature made Mon Jun  1 07:31:39 2020 UTC
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./freebayes_1.3.2-3.dsc
dpkg-source: info: extracting freebayes in freebayes-1.3.2
dpkg-source: info: unpacking freebayes_1.3.2.orig.tar.gz
dpkg-source: info: unpacking freebayes_1.3.2-3.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying use_debian_libs.patch
dpkg-source: info: applying fix_all_target.patch
dpkg-source: info: applying fix_test.patch
dpkg-source: info: applying vcffirstheader.patch
dpkg-source: info: applying skip_failing_test.patch
dpkg-source: info: applying 2to3.patch
dpkg-source: info: applying 1ad5cd64ac7270aac03d58d2dba0861ecc85b6b6.patch
dpkg-source: info: applying hardening
dpkg-source: info: applying version_bump

Check disc space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LANG=C.UTF-8
LC_ALL=C.UTF-8
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-19389661
SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-19389661
SCHROOT_COMMAND=env
SCHROOT_GID=2501
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=build-PACKAGEBUILD-19389661
SCHROOT_UID=2001
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=unknown
USER=buildd
V=1

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package freebayes
dpkg-buildpackage: info: source version 1.3.2-3
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture amd64
 debian/rules clean
dh clean --no-parallel
   dh_auto_clean -O--no-parallel
	make -j1 clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
cd src && make clean
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
rm -rf *.o *.cgh *~ freebayes alleles ../bin/freebayes ../bin/alleles ../vcflib/*.o ../vcflib/tabixpp/*.{o,a} tabix.hpp
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
rm -fr bin/*
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_autoreconf_clean -O--no-parallel
   dh_clean -O--no-parallel
 debian/rules binary
dh binary --no-parallel
   dh_update_autotools_config -O--no-parallel
   dh_autoreconf -O--no-parallel
   dh_auto_configure -O--no-parallel
   debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_build -- CXXFLAGS="-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -D_FILE_OFFSET_BITS=64"
	make -j1 "INSTALL=install --strip-program=true" "CXXFLAGS=-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -D_FILE_OFFSET_BITS=64"
make[2]: Entering directory '/<<PKGBUILDDIR>>'
cd src && make
make[3]: Entering directory '/<<PKGBUILDDIR>>/src'
DETECTED_VERSION = v1.3.2
CURRENT_VERSION  = 
Updating version file.
g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../ttmath  -I/usr/include/bamtools -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib  -I/usr/include/jsoncpp -c freebayes.cpp
g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../ttmath  -I/usr/include/bamtools -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib  -I/usr/include/jsoncpp -c BedReader.cpp
g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../ttmath  -I/usr/include/bamtools -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib  -I/usr/include/jsoncpp -c CNV.cpp
gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++11 -Wdate-time -D_FORTIFY_SOURCE=2 -I../ttmath  -I/usr/include/bamtools -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib  -I/usr/include/jsoncpp -c fastlz.c	
cc1: warning: command line option ‘-std=gnu++11’ is valid for C++/ObjC++ but not for C
g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../ttmath  -I/usr/include/bamtools -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib  -I/usr/include/jsoncpp -c Utility.cpp
g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../ttmath  -I/usr/include/bamtools -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib  -I/usr/include/jsoncpp -c Fasta.cpp
g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../ttmath  -I/usr/include/bamtools -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib  -I/usr/include/jsoncpp -c Parameters.cpp
g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../ttmath  -I/usr/include/bamtools -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib  -I/usr/include/jsoncpp -c Allele.cpp
Allele.cpp: In member function ‘const string Allele::base() const’:
Allele.cpp:297:1: warning: control reaches end of non-void function [-Wreturn-type]
  297 | }
      | ^
g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../ttmath  -I/usr/include/bamtools -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib  -I/usr/include/jsoncpp -c Sample.cpp
g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../ttmath  -I/usr/include/bamtools -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib  -I/usr/include/jsoncpp -c Result.cpp
g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../ttmath  -I/usr/include/bamtools -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib  -I/usr/include/jsoncpp -c AlleleParser.cpp
g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../ttmath  -I/usr/include/bamtools -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib  -I/usr/include/jsoncpp -c Genotype.cpp
g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../ttmath  -I/usr/include/bamtools -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib  -I/usr/include/jsoncpp -c DataLikelihood.cpp
g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../ttmath  -I/usr/include/bamtools -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib  -I/usr/include/jsoncpp -c Multinomial.cpp
g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../ttmath  -I/usr/include/bamtools -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib  -I/usr/include/jsoncpp -c Ewens.cpp
g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../ttmath  -I/usr/include/bamtools -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib  -I/usr/include/jsoncpp -c ResultData.cpp
g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../ttmath  -I/usr/include/bamtools -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib  -I/usr/include/jsoncpp -c Dirichlet.cpp
g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../ttmath  -I/usr/include/bamtools -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib  -I/usr/include/jsoncpp -c Marginals.cpp
g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../ttmath  -I/usr/include/bamtools -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib  -I/usr/include/jsoncpp -c split.cpp
g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../ttmath  -I/usr/include/bamtools -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib  -I/usr/include/jsoncpp -c LeftAlign.cpp
g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../ttmath  -I/usr/include/bamtools -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib  -I/usr/include/jsoncpp -c IndelAllele.cpp
g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../ttmath  -I/usr/include/bamtools -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib  -I/usr/include/jsoncpp -c Bias.cpp
g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2  -c -o Contamination.o Contamination.cpp
g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../ttmath  -I/usr/include/bamtools -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib  -I/usr/include/jsoncpp -c NonCall.cpp
g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../ttmath  -I/usr/include/bamtools -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib  -I/usr/include/jsoncpp -c SegfaultHandler.cpp
g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -D_FILE_OFFSET_BITS=64 -I../ttmath  -I/usr/include/bamtools -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib  -I/usr/include/jsoncpp freebayes.o BedReader.o CNV.o fastlz.o Fasta.o Parameters.o Allele.o Sample.o Result.o AlleleParser.o Utility.o Genotype.o DataLikelihood.o Multinomial.o Ewens.o ResultData.o Dirichlet.o Marginals.o split.o LeftAlign.o IndelAllele.o Bias.o Contamination.o NonCall.o SegfaultHandler.o -o ../bin/freebayes -lz -pthread -lbamtools -ltabixpp -lz -lm -lpthread -lvcflib -lsmithwaterman -ldisorder -lfastahack -lhts -lseqlib -lbwa -ljsoncpp -lz -pthread
g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../ttmath  -I/usr/include/bamtools -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib  -I/usr/include/jsoncpp -c bamleftalign.cpp
g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -D_FILE_OFFSET_BITS=64 -I../ttmath  -I/usr/include/bamtools -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -I/usr/include/SeqLib  -I/usr/include/jsoncpp bamleftalign.o BedReader.o CNV.o fastlz.o Fasta.o Parameters.o Allele.o Sample.o Result.o AlleleParser.o Utility.o Genotype.o DataLikelihood.o Multinomial.o Ewens.o ResultData.o Dirichlet.o Marginals.o split.o LeftAlign.o IndelAllele.o Bias.o Contamination.o NonCall.o SegfaultHandler.o -o ../bin/bamleftalign -lz -pthread -lbamtools -ltabixpp -lz -lm -lpthread -lvcflib -lsmithwaterman -ldisorder -lfastahack -lhts -lseqlib -lbwa -ljsoncpp -lz -pthread
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
mkdir -p /<<PKGBUILDDIR>>/test/bash-tap/
for bt in /<<PKGBUILDDIR>>/debian/bash-tap/* ; do ln -s ${bt} /<<PKGBUILDDIR>>/test/bash-tap/`basename ${bt}` ; done
ln -s /<<PKGBUILDDIR>>/debian/test-simple-bash/lib test/test-simple-bash
chmod +x vcflib/scripts/vcffirstheader
# export PATH=/usr/lib/vcflib/binaries/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games dh_auto_test
echo "Tests should be run" && PATH=/usr/lib/vcflib/binaries/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games dh_auto_test && echo "Tests were running successfully"
Tests should be run
	make -j1 test
make[2]: Entering directory '/<<PKGBUILDDIR>>'
cd test && make test
make[3]: Entering directory '/<<PKGBUILDDIR>>/test'
prove -v t
t/00_region_and_target_handling.t .. 
1..11
ok 1 - ref:4-5 ref:6-7 are empty
ok 2 - ref:4 ref:6 are empty
ok 3 - ref:5-6 ref:7-8
ok 4 - ref:5 ref:7
ok 5 - ref:5-
ok 6 - full output
ok 7 - --targets t/../00_region_and_target_handling.t.bed
ok 8 - --region ref
ok 9 - ref:1,0-
ok 10 - ref:1,0-1,1
ok 11 - region outside of bounds error
ok
[E::idx_find_and_load] Could not retrieve index file for '-'
Random access with SetRegion not available for STDIN reading (no index file)
ERROR(freebayes): Could not SetRegion to q:1..10000
t/01_call_variants.t ............... 
1..23
ok 1 - variant calling recovers most of the GiAB variants in a test region
ok 2 - freebayes produces the same number of calls if targeted per site or called without targets
ok 3 - a targets bed file can be used with the same effect as running by region
ok 4 - reading from stdin or not makes no difference
ok 5 - freebayes processes all alignments in input
ok 6 - freebayes correctly handles variant input
ok 7 - freebayes puts required variants in output
ok 8 - freebayes limits calls to input variants correctly
ok 9 - freebayes reports all input variants even when there is no input data
ok 10 - freebayes handles region and variant input
ok 11 - freebayes limits to variant input correctly when region is given
ok 12 - freebayes handles variant input and reading from stdin
ok 13 - freebayes limits to variant input when reading from stdin
ok 14 - freebayes handles region, stdin, and variant input
ok 15 - freebayes bails out when given a gzipped or corrupted reference
ok 16 - running in parallel makes no difference
ok 17 - freebayes handles region and variant input even with : in contig names
ok 18 - freebayes can handle spliced reads
ok 19 - freebayes produces the expected number of lines of gVCF output
ok 20 - freebayes produces the expected number of lines of gVCF output
ok 21 - freebayes produces the expected number of lines of gVCF output
ok 22 - the CNV map may be used to specify per-sample copy numbers
ok 23 - freebayes makes the expected number of calls when capping coverage
ok
t/02_multi_bam.t ................... 
1..7
ok 1 - freebayes calls from two identical BAMs
ok 2 - freebayes calls from two BAMs with different samples for different read groups
ok 3 - freebayes calls from two BAMs with different technologies for different read groups
ok 4 - freebayes rejects two BAMs with different samples for same read groups
ok 5 - freebayes rejects two BAMs with different technologies for same read groups
ok 6 - freebayes calls multiple alts from two different BAMs
ok 7 - freebayes rejects two BAMs with the same name
ok
t/03_reference_bases.t ............. 
1..3
ok 1 - freebayes rejects invalid reference
ok 2 - freebayes does not put uppercase IUPAC bases in VCFs
ok 3 - freebayes does not put lowercase IUPAC bases in VCFs
ok
All tests successful.
Files=4, Tests=44, 13 wallclock secs ( 0.06 usr  0.02 sys + 10.22 cusr  3.57 csys = 13.87 CPU)
Result: PASS
make[3]: Leaving directory '/<<PKGBUILDDIR>>/test'
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
Tests were running successfully
rm -rf /<<PKGBUILDDIR>>/test/bash-tap
rm test/test-simple-bash/lib
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   create-stamp debian/debhelper-build-stamp
   dh_testroot -O--no-parallel
   dh_prep -O--no-parallel
   debian/rules override_dh_auto_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
echo "Skip autoinstall process - files are moved around by dh_install"
Skip autoinstall process - files are moved around by dh_install
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_install -O--no-parallel
   dh_installdocs -O--no-parallel
   dh_installchangelogs -O--no-parallel
   dh_installexamples -O--no-parallel
   dh_installsystemduser -O--no-parallel
   dh_perl -O--no-parallel
   dh_link -O--no-parallel
   dh_strip_nondeterminism -O--no-parallel
   dh_compress -O--no-parallel
   dh_fixperms -O--no-parallel
   dh_missing -O--no-parallel
   dh_dwz -a -O--no-parallel
   dh_strip -a -O--no-parallel
   dh_makeshlibs -a -O--no-parallel
   dh_shlibdeps -a -O--no-parallel
   dh_installdeb -O--no-parallel
   dh_gencontrol -O--no-parallel
   dh_md5sums -O--no-parallel
   dh_builddeb -O--no-parallel
INFO: pkgstriptranslations version 144
INFO: pkgstriptranslations version 144
pkgstriptranslations: processing freebayes (in debian/freebayes); do_strip: , oemstrip: 
pkgstriptranslations: processing freebayes-dbgsym (in debian/.debhelper/freebayes/dbgsym-root); do_strip: , oemstrip: 
pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>"
pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>"
pkgstripfiles: processing control file: debian/freebayes/DEBIAN/control, package freebayes, directory debian/freebayes
pkgstripfiles: Running PNG optimization (using 4 cpus) for package freebayes ...
pkgstripfiles: No PNG files.
dpkg-deb: building package 'freebayes' in '../freebayes_1.3.2-3_amd64.deb'.
pkgstripfiles: processing control file: debian/.debhelper/freebayes/dbgsym-root/DEBIAN/control, package freebayes-dbgsym, directory debian/.debhelper/freebayes/dbgsym-root
dpkg-deb: building package 'freebayes-dbgsym' in 'debian/.debhelper/scratch-space/build-freebayes/freebayes-dbgsym_1.3.2-3_amd64.deb'.
	Renaming freebayes-dbgsym_1.3.2-3_amd64.deb to freebayes-dbgsym_1.3.2-3_amd64.ddeb
 dpkg-genbuildinfo --build=binary
 dpkg-genchanges --build=binary -mLaunchpad Build Daemon <buildd@lgw01-amd64-011.buildd> >../freebayes_1.3.2-3_amd64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 20200601-1116

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Post Build Chroot                                                            |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


freebayes_1.3.2-3_amd64.changes:
--------------------------------

Format: 1.8
Date: Mon, 01 Jun 2020 02:50:39 +0530
Source: freebayes
Binary: freebayes
Architecture: amd64
Version: 1.3.2-3
Distribution: groovy-proposed
Urgency: medium
Maintainer: Launchpad Build Daemon <buildd@lgw01-amd64-011.buildd>
Changed-By: Pranav Ballaney <ballaneypranav@gmail.com>
Description:
 freebayes  - Bayesian haplotype-based polymorphism discovery and genotyping
Changes:
 freebayes (1.3.2-3) unstable; urgency=medium
 .
   * Team upload
 .
   [ Pranav Ballaney ]
   * Install test data
   * Add autopkgtests
   * Install docs and binaries
 .
   [ Andreas Tille ]
   * Standards-Version: 4.5.0 (routine-update)
   * debhelper-compat 13 (routine-update)
   * Add salsa-ci file (routine-update)
   * Rules-Requires-Root: no (routine-update)
   * Set upstream metadata fields: Bug-Database, Bug-Submit.
   * Add missing files to debian/source/include-binaries
Checksums-Sha1:
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 7f0eff0486330838537981a9d4dc1f0d93cb18c8 11282 freebayes_1.3.2-3_amd64.buildinfo
 19ff1dcbdf4c090b492a4b7dc5198d4f25c45cac 1361832 freebayes_1.3.2-3_amd64.deb
Checksums-Sha256:
 e759c6994403fdf1e18250540edc6a17622f82c957197bb465c644cad01a79e7 10225564 freebayes-dbgsym_1.3.2-3_amd64.ddeb
 d54066e45b0e37f248121f98ed27b45b485114a0373aff193fceeaa6b0b39b6a 11282 freebayes_1.3.2-3_amd64.buildinfo
 0d03d9fb3ecec425476fd55ef7c9f12c02f95da4e9710cf9ea3c516e5009389c 1361832 freebayes_1.3.2-3_amd64.deb
Files:
 3f14679e245389bc83785c57e17763b6 10225564 debug optional freebayes-dbgsym_1.3.2-3_amd64.ddeb
 9211d06339da4165f519ee19a57cfdf4 11282 science optional freebayes_1.3.2-3_amd64.buildinfo
 147103c44393320ede8863a6fdcbf015 1361832 science optional freebayes_1.3.2-3_amd64.deb

+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


freebayes_1.3.2-3_amd64.deb
---------------------------

 new debian package, version 2.0.
 size 1361832 bytes: control archive=2048 bytes.
     931 bytes,    18 lines      control              
    4005 bytes,    48 lines      md5sums              
 Package: freebayes
 Version: 1.3.2-3
 Architecture: amd64
 Maintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
 Original-Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 4489
 Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libseqlib1 (>= 1.1.2+dfsg-5), libstdc++6 (>= 9), libtabixpp0 (>= 1.0.0), libvcflib1 (>= 1.0.1+dfsg), zlib1g (>= 1:1.1.4)
 Recommends: parallel
 Section: science
 Priority: optional
 Homepage: https://github.com/ekg/freebayes
 Description: Bayesian haplotype-based polymorphism discovery and genotyping
  FreeBayes is a Bayesian genetic variant detector designed to find
  small polymorphisms, specifically SNPs (single-nucleotide
  polymorphisms), indels (insertions and deletions), MNPs
  (multi-nucleotide polymorphisms), and complex events (composite
  insertion and substitution events) smaller than the length of a
  short-read sequencing alignment.

drwxr-xr-x root/root         0 2020-05-31 21:20 ./
drwxr-xr-x root/root         0 2020-05-31 21:20 ./usr/
drwxr-xr-x root/root         0 2020-05-31 21:20 ./usr/bin/
-rwxr-xr-x root/root   1903368 2020-05-31 21:20 ./usr/bin/bamleftalign
-rwxr-xr-x root/root   1948168 2020-05-31 21:20 ./usr/bin/freebayes
drwxr-xr-x root/root         0 2020-05-31 21:20 ./usr/share/
drwxr-xr-x root/root         0 2020-05-31 21:20 ./usr/share/doc/
drwxr-xr-x root/root         0 2020-05-31 21:20 ./usr/share/doc/freebayes/
-rw-r--r-- root/root      9516 2019-10-06 08:14 ./usr/share/doc/freebayes/README.md.gz
-rw-r--r-- root/root       278 2020-05-31 21:20 ./usr/share/doc/freebayes/README.test
-rw-r--r-- root/root        83 2020-05-31 21:20 ./usr/share/doc/freebayes/README.test_data
-rw-r--r-- root/root      1278 2020-05-31 21:20 ./usr/share/doc/freebayes/changelog.Debian.gz
-rw-r--r-- root/root      3194 2020-05-31 21:20 ./usr/share/doc/freebayes/copyright
drwxr-xr-x root/root         0 2020-05-31 21:20 ./usr/share/doc/freebayes/examples/
-rw-r--r-- root/root       201 2020-05-31 21:20 ./usr/share/doc/freebayes/examples/Makefile
-rw-r--r-- root/root        83 2020-05-31 21:20 ./usr/share/doc/freebayes/examples/README.test_data
-rw-r--r-- root/root       906 2019-10-06 08:14 ./usr/share/doc/freebayes/examples/pipeline.sh
drwxr-xr-x root/root         0 2019-10-06 08:14 ./usr/share/doc/freebayes/examples/splice/
-rw-r--r-- root/root     22589 2019-10-06 08:14 ./usr/share/doc/freebayes/examples/splice/1:883884-887618.bam
-rw-r--r-- root/root       288 2019-10-06 08:14 ./usr/share/doc/freebayes/examples/splice/1:883884-887618.bam.bai
-rw-r--r-- root/root      3801 2019-10-06 08:14 ./usr/share/doc/freebayes/examples/splice/1:883884-887618.fa
-rw-r--r-- root/root        15 2019-10-06 08:14 ./usr/share/doc/freebayes/examples/splice/1:883884-887618.fa.fai
drwxr-xr-x root/root         0 2020-05-31 21:20 ./usr/share/doc/freebayes/examples/t/
-rw-r--r-- root/root      3536 2019-10-06 08:14 ./usr/share/doc/freebayes/examples/t/00_region_and_target_handling.t
-rwxr-xr-x root/root      6496 2020-05-31 21:20 ./usr/share/doc/freebayes/examples/t/01_call_variants.t
-rwxr-xr-x root/root      2882 2019-10-06 08:14 ./usr/share/doc/freebayes/examples/t/02_multi_bam.t
-rw-r--r-- root/root      1349 2019-10-06 08:14 ./usr/share/doc/freebayes/examples/t/03_reference_bases.t
-rw-r--r-- root/root       246 2020-05-31 21:20 ./usr/share/doc/freebayes/examples/targets.bed
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-rw-r--r-- root/root        17 2020-05-31 21:20 ./usr/share/doc/freebayes/examples/test.alt
-rw-r--r-- root/root       230 2020-05-31 21:20 ./usr/share/doc/freebayes/examples/test.bam
-rw-r--r-- root/root        96 2020-05-31 21:20 ./usr/share/doc/freebayes/examples/test.bam.bai
-rw-r--r-- root/root       112 2020-05-31 21:20 ./usr/share/doc/freebayes/examples/test.bed
-rw-r--r-- root/root        17 2020-05-31 21:20 ./usr/share/doc/freebayes/examples/test.ref
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+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not removing build depends: as requested

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: amd64
Build-Space: 172892
Build-Time: 183
Distribution: groovy-proposed
Host Architecture: amd64
Install-Time: 62
Job: freebayes_1.3.2-3.dsc
Machine Architecture: amd64
Package: freebayes
Package-Time: 246
Source-Version: 1.3.2-3
Space: 172892
Status: successful
Version: 1.3.2-3
--------------------------------------------------------------------------------
Finished at 20200601-1116
Build needed 00:04:06, 172892k disc space
RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=groovy --arch=amd64 PACKAGEBUILD-19389661
Scanning for processes to kill in build PACKAGEBUILD-19389661