fasttree 2.1.7-1 source package in Ubuntu
Changelog
fasttree (2.1.7-1) unstable; urgency=low * New upstream version * debian/control: remove DM-Upload-Allowed: * debian/control: bump standards version to 3.9.4 -- Thorsten Alteholz <email address hidden> Mon, 06 May 2013 18:00:00 +0200
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any
- Section:
- science
- Urgency:
- Low Urgency
See full publishing history Publishing
| Series | Published | Component | Section | |
|---|---|---|---|---|
| Trusty | release | universe | science |
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| fasttree_2.1.7-1.dsc | 1.4 KiB | 4357af890d22a5ca814218caa6691384a8273e0feb0976c3d15e88e1dbfc310e |
| fasttree_2.1.7.orig.tar.gz | 109.6 KiB | 59b2fa8707ff37a76f22002d151cb9ed5bcca7eaecf4fb5c3cdf74f9120f3199 |
| fasttree_2.1.7-1.debian.tar.gz | 7.4 KiB | 14a3d6fe95d8a3fe3c386bed9c5ea147c19f47e068436514c656e4992a2da0a4 |
Available diffs
- diff from 2.1.5-1 to 2.1.7-1 (13.3 KiB)
No changes file available.
Binary packages built by this source
- fasttree: phylogenetic trees from alignments of nucleotide or protein sequences
FastTree infers approximately-
maximum- likelihood phylogenetic trees from
alignments of nucleotide or protein sequences. It handles alignments
with up to a million of sequences in a reasonable amount of time and
memory. For large alignments, FastTree is 100-1,000 times faster than
PhyML 3.0 or RAxML 7.
.
FastTree is more accurate than PhyML 3 with default settings, and much
more accurate than the distance-matrix methods that are traditionally
used for large alignments. FastTree uses the Jukes-Cantor or generalized
time-reversible (GTR) models of nucleotide evolution and the JTT
(Jones-Taylor- Thornton 1992) model of amino acid evolution. To account
for the varying rates of evolution across sites, FastTree uses a single
rate for each site (the "CAT" approximation). To quickly estimate the
reliability of each split in the tree, FastTree computes local support
values with the Shimodaira-Hasegawa test (these are the same as PhyML 3's
"SH-like local supports").
.
This package contains a single threaded version (fasttree) and a
parallel version which uses OpenMP (fasttreMP).
