fasttree 2.1.11-2 source package in Ubuntu
Changelog
fasttree (2.1.11-2) unstable; urgency=medium
* Standards-Version: 4.5.1 (routine-update)
* debhelper-compat 13 (routine-update)
* autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g (routine-update)
* Add salsa-ci file (routine-update)
* Rules-Requires-Root: no (routine-update)
* Trim trailing whitespace.
* Set field Upstream-Contact in debian/copyright.
* Remove obsolete fields Contact, Name from debian/upstream/metadata (already
present in machine-readable debian/copyright).
* watch file standard 4 (routine-update)
-- Andreas Tille <email address hidden> Thu, 17 Dec 2020 17:44:13 +0100
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any
- Section:
- science
- Urgency:
- Medium Urgency
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| fasttree_2.1.11-2.dsc | 2.0 KiB | e12f3c44a01f2a4b0dab9d315300bf6b8d23425b6c10b4cd96c2a0ad9f5eb203 |
| fasttree_2.1.11.orig.tar.xz | 93.8 KiB | 7f15713f02afb167f4f33dc067b5b2282b219b22fbaa17eb8f771a7147a05a5c |
| fasttree_2.1.11-2.debian.tar.xz | 33.3 KiB | c423cfcdfd3f65d160e3c1c397bb7d8eea2c0e17a8892ded3e2c3a0c379560cf |
Available diffs
- diff from 2.1.11-1 to 2.1.11-2 (1.4 KiB)
No changes file available.
Binary packages built by this source
- fasttree: phylogenetic trees from alignments of nucleotide or protein sequences
FastTree infers approximately-
maximum- likelihood phylogenetic trees from
alignments of nucleotide or protein sequences. It handles alignments
with up to a million of sequences in a reasonable amount of time and
memory. For large alignments, FastTree is 100-1,000 times faster than
PhyML 3.0 or RAxML 7.
.
FastTree is more accurate than PhyML 3 with default settings, and much
more accurate than the distance-matrix methods that are traditionally
used for large alignments. FastTree uses the Jukes-Cantor or generalized
time-reversible (GTR) models of nucleotide evolution and the JTT
(Jones-Taylor- Thornton 1992) model of amino acid evolution. To account
for the varying rates of evolution across sites, FastTree uses a single
rate for each site (the "CAT" approximation). To quickly estimate the
reliability of each split in the tree, FastTree computes local support
values with the Shimodaira-Hasegawa test (these are the same as PhyML 3's
"SH-like local supports").
.
This package contains a single threaded version (fasttree) and a
parallel version which uses OpenMP (fasttreMP).
- fasttree-dbgsym: No summary available for fasttree-dbgsym in ubuntu kinetic.
No description available for fasttree-dbgsym in ubuntu kinetic.
