fasttree 2.1.11-1 source package in Ubuntu
Changelog
fasttree (2.1.11-1) unstable; urgency=medium [ Jelmer Vernooij ] * Trim trailing whitespace. [ Andreas Tille ] * New upstream version * debhelper-compat 12 * Standards-Version: 4.4.0 * Remove trailing whitespace in debian/rules -- Andreas Tille <email address hidden> Wed, 31 Jul 2019 15:43:36 +0200
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any
- Section:
- science
- Urgency:
- Medium Urgency
See full publishing history Publishing
Series | Published | Component | Section | |
---|---|---|---|---|
Focal | release | universe | science |
Downloads
File | Size | SHA-256 Checksum |
---|---|---|
fasttree_2.1.11-1.dsc | 2.0 KiB | 2c20f5fd6cc2d5860ad62f4bfd72edd0fe0bc89801b65af0dced4e285701cac9 |
fasttree_2.1.11.orig.tar.xz | 93.8 KiB | 7f15713f02afb167f4f33dc067b5b2282b219b22fbaa17eb8f771a7147a05a5c |
fasttree_2.1.11-1.debian.tar.xz | 32.9 KiB | 853dd529e9f65eaf49445e93eb2b59aa1039e7e563c0132e07851a4f5a96c353 |
Available diffs
- diff from 2.1.10-2 to 2.1.11-1 (4.1 KiB)
No changes file available.
Binary packages built by this source
- fasttree: phylogenetic trees from alignments of nucleotide or protein sequences
FastTree infers approximately-
maximum- likelihood phylogenetic trees from
alignments of nucleotide or protein sequences. It handles alignments
with up to a million of sequences in a reasonable amount of time and
memory. For large alignments, FastTree is 100-1,000 times faster than
PhyML 3.0 or RAxML 7.
.
FastTree is more accurate than PhyML 3 with default settings, and much
more accurate than the distance-matrix methods that are traditionally
used for large alignments. FastTree uses the Jukes-Cantor or generalized
time-reversible (GTR) models of nucleotide evolution and the JTT
(Jones-Taylor- Thornton 1992) model of amino acid evolution. To account
for the varying rates of evolution across sites, FastTree uses a single
rate for each site (the "CAT" approximation). To quickly estimate the
reliability of each split in the tree, FastTree computes local support
values with the Shimodaira-Hasegawa test (these are the same as PhyML 3's
"SH-like local supports").
.
This package contains a single threaded version (fasttree) and a
parallel version which uses OpenMP (fasttreMP).
- fasttree-dbgsym: debug symbols for fasttree