https://launchpad.net/ubuntu/+source/fastqtl/2.184+v7+dfsg-4build3/+build/28001942 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-070 5.4.0-173-generic #191-Ubuntu SMP Fri Feb 2 13:54:37 UTC 2024 aarch64 Buildd toolchain package versions: launchpad-buildd_236~650~ubuntu20.04.1 python3-lpbuildd_236~650~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.11 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1.1. Syncing the system clock with the buildd NTP service... 1 Apr 14:07:44 ntpdate[1841]: adjust time server 10.211.37.1 offset 0.001459 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=noble --arch=armhf PACKAGEBUILD-28001942 --image-type chroot /home/buildd/filecache-default/59612f0fc5bae33f6226b6e60c2e882b82c04bd0 Creating target for build PACKAGEBUILD-28001942 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=noble --arch=armhf PACKAGEBUILD-28001942 Starting target for build PACKAGEBUILD-28001942 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=noble --arch=armhf PACKAGEBUILD-28001942 'deb http://ftpmaster.internal/ubuntu noble main universe' 'deb http://ftpmaster.internal/ubuntu noble-security main universe' 'deb http://ftpmaster.internal/ubuntu noble-updates main universe' 'deb http://ftpmaster.internal/ubuntu noble-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-28001942 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=noble --arch=armhf PACKAGEBUILD-28001942 Updating target for build PACKAGEBUILD-28001942 Get:1 http://ftpmaster.internal/ubuntu noble InRelease [255 kB] Get:2 http://ftpmaster.internal/ubuntu noble-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu noble-updates InRelease [89.7 kB] Get:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] Get:5 http://ftpmaster.internal/ubuntu noble/main armhf Packages [1336 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main Translation-en [512 kB] Get:7 http://ftpmaster.internal/ubuntu noble/universe armhf Packages [14.3 MB] Get:8 http://ftpmaster.internal/ubuntu noble/universe Translation-en [6118 kB] Get:9 http://ftpmaster.internal/ubuntu noble-updates/main armhf Packages [666 kB] Get:10 http://ftpmaster.internal/ubuntu noble-updates/main Translation-en [242 kB] Get:11 http://ftpmaster.internal/ubuntu noble-updates/universe armhf Packages [4423 kB] Get:12 http://ftpmaster.internal/ubuntu noble-updates/universe Translation-en [1693 kB] Get:13 http://ftpmaster.internal/ubuntu noble-proposed/main armhf Packages [623 kB] Get:14 http://ftpmaster.internal/ubuntu noble-proposed/main Translation-en [239 kB] Get:15 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf Packages [2608 kB] Get:16 http://ftpmaster.internal/ubuntu noble-proposed/universe Translation-en [1505 kB] Fetched 34.9 MB in 18s (1955 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libnsl-dev libtirpc-dev libunistring2 perl-modules-5.36 Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: libapt-pkg6.0* libdb5.3* libext2fs2* libgdbm-compat4* libgdbm6* libgnutls30* libhogweed6* libnettle8* libnpth0* libperl5.36* libpng16-16* libreadline8* libssl3* libtirpc3* usrmerge* The following NEW packages will be installed: cpp-13-arm-linux-gnueabihf cpp-arm-linux-gnueabihf g++-13-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-13-arm-linux-gnueabihf gcc-14-base gcc-arm-linux-gnueabihf libapt-pkg6.0t64 libdb5.3t64 libext2fs2t64 libgdbm-compat4t64 libgdbm6t64 libgnutls30t64 libhogweed6t64 libnettle8t64 libnpth0t64 libperl5.38t64 libpng16-16t64 libreadline8t64 libssl3t64 libtirpc3t64 libunistring5 perl-modules-5.38 The following packages will be upgraded: apt apt-utils base-files base-passwd bash bash-completion binutils binutils-arm-linux-gnueabihf binutils-common bsdextrautils bsdutils bzip2 ca-certificates coreutils cpp cpp-13 dash debconf debconf-i18n debianutils diffutils dpkg dpkg-dev e2fsprogs fakeroot g++ g++-13 gcc gcc-13 gcc-13-base gpg gpg-agent gpgconf gpgv grep gzip hostname init init-system-helpers krb5-locales libacl1 libapparmor1 libargon2-1 libasan8 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libfakeroot libfdisk1 libffi8 libgcc-13-dev libgcc-s1 libgcrypt20 libgomp1 libgpg-error-l10n libgpg-error0 libgpm2 libgssapi-krb5-2 libidn2-0 libip4tc2 libjansson4 libk5crypto3 libkeyutils1 libkmod2 libkrb5-3 libkrb5support0 liblocale-gettext-perl liblzma5 libmd0 libmount1 libncursesw6 libnsl-dev libnsl2 libnss-nisplus libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libproc2-0 libseccomp2 libselinux1 libsemanage-common libsemanage2 libsepol2 libsframe1 libsmartcols1 libsqlite3-0 libss2 libstdc++-13-dev libstdc++6 libsystemd-shared libsystemd0 libtext-charwidth-perl libtext-iconv-perl libtinfo6 libtirpc-common libtirpc-dev libubsan1 libudev1 libuuid1 libxxhash0 libzstd1 linux-libc-dev login logsave lto-disabled-list mawk mount ncurses-base ncurses-bin openssl optipng passwd perl perl-base pinentry-curses procps psmisc readline-common sed sensible-utils systemd systemd-dev systemd-sysv sysvinit-utils tar tzdata ubuntu-keyring util-linux uuid-runtime xz-utils zlib1g 154 upgraded, 23 newly installed, 15 to remove and 0 not upgraded. Need to get 96.8 MB of archives. After this operation, 24.8 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libnsl-dev armhf 1.3.0-3build3 [66.2 kB] Get:2 http://ftpmaster.internal/ubuntu noble/main armhf libcrypt-dev armhf 1:4.4.36-4 [136 kB] Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libc6-dev armhf 2.39-0ubuntu8 [1352 kB] Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libc-dev-bin armhf 2.39-0ubuntu8 [19.1 kB] Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libtirpc-common all 1.3.4+ds-1.1build1 [8094 B] Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libtirpc-dev armhf 1.3.4+ds-1.1build1 [184 kB] Get:7 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf libnss-nisplus armhf 1.3-5build1 [20.1 kB] Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libnsl2 armhf 1.3.0-3build3 [36.5 kB] Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgssapi-krb5-2 armhf 1.20.1-6ubuntu2 [119 kB] Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libkrb5-3 armhf 1.20.1-6ubuntu2 [321 kB] Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libk5crypto3 armhf 1.20.1-6ubuntu2 [78.6 kB] Get:12 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libkrb5support0 armhf 1.20.1-6ubuntu2 [31.4 kB] Get:13 http://ftpmaster.internal/ubuntu noble/main armhf libacl1 armhf 2.3.2-1 [15.1 kB] Get:14 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libapparmor1 armhf 4.0.0-beta3-0ubuntu3 [45.1 kB] Get:15 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libaudit-common all 1:3.1.2-2.1build1 [5736 B] Get:16 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcap-ng0 armhf 0.8.4-2build2 [13.6 kB] Get:17 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libaudit1 armhf 1:3.1.2-2.1build1 [44.4 kB] Get:18 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblkid1 armhf 2.39.3-9ubuntu4 [160 kB] Get:19 http://ftpmaster.internal/ubuntu noble/main armhf libcap2 armhf 1:2.66-5ubuntu1 [25.8 kB] Get:20 http://ftpmaster.internal/ubuntu noble/main armhf libcrypt1 armhf 1:4.4.36-4 [104 kB] Get:21 http://ftpmaster.internal/ubuntu noble/main armhf libgpg-error-l10n all 1.47-3build1 [8024 B] Get:22 http://ftpmaster.internal/ubuntu noble/main armhf libgpg-error0 armhf 1.47-3build1 [61.6 kB] Get:23 http://ftpmaster.internal/ubuntu noble/main armhf libgcrypt20 armhf 1.10.3-2 [454 kB] Get:24 http://ftpmaster.internal/ubuntu noble-proposed/main armhf liblzma5 armhf 5.6.1+really5.4.5-1build1 [112 kB] Get:25 http://ftpmaster.internal/ubuntu noble/main armhf libzstd1 armhf 1.5.5+dfsg2-2 [265 kB] Get:26 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libkmod2 armhf 31+20240202-2ubuntu5 [45.0 kB] Get:27 http://ftpmaster.internal/ubuntu noble/main armhf libpcre2-8-0 armhf 10.42-4ubuntu1 [198 kB] Get:28 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libselinux1 armhf 3.5-2ubuntu2 [70.9 kB] Get:29 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libmount1 armhf 2.39.3-9ubuntu4 [171 kB] Get:30 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libtext-iconv-perl armhf 1.7-8build3 [12.7 kB] Get:31 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libtext-charwidth-perl armhf 0.04-11build3 [8992 B] Get:32 http://ftpmaster.internal/ubuntu noble-proposed/main armhf perl-modules-5.38 all 5.38.2-3.2build1 [3110 kB] Get:33 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libdb5.3t64 armhf 5.3.28+dfsg2-6build1 [661 kB] Get:34 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgdbm6t64 armhf 1.23-5.1build1 [30.3 kB] Get:35 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgdbm-compat4t64 armhf 1.23-5.1build1 [6216 B] Get:36 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libperl5.38t64 armhf 5.38.2-3.2build1 [4109 kB] Get:37 http://ftpmaster.internal/ubuntu noble-proposed/main armhf perl armhf 5.38.2-3.2build1 [231 kB] Get:38 http://ftpmaster.internal/ubuntu noble-proposed/main armhf perl-base armhf 5.38.2-3.2build1 [1671 kB] Get:39 http://ftpmaster.internal/ubuntu noble-proposed/main armhf liblocale-gettext-perl armhf 1.07-6ubuntu5 [15.1 kB] Get:40 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libc6 armhf 2.39-0ubuntu8 [2828 kB] Get:41 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libc-bin armhf 2.39-0ubuntu8 [530 kB] Get:42 http://ftpmaster.internal/ubuntu noble-proposed/main armhf openssl armhf 3.0.13-0ubuntu3 [974 kB] Get:43 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsystemd-shared armhf 255.4-1ubuntu6 [2010 kB] Get:44 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcryptsetup12 armhf 2:2.7.0-1ubuntu3 [238 kB] Get:45 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libssl3t64 armhf 3.0.13-0ubuntu3 [1558 kB] Get:46 http://ftpmaster.internal/ubuntu noble-proposed/main armhf systemd-dev all 255.4-1ubuntu6 [104 kB] Get:47 http://ftpmaster.internal/ubuntu noble-proposed/main armhf systemd-sysv armhf 255.4-1ubuntu6 [11.9 kB] Get:48 http://ftpmaster.internal/ubuntu noble-proposed/main armhf systemd armhf 255.4-1ubuntu6 [3502 kB] Get:49 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsystemd0 armhf 255.4-1ubuntu6 [406 kB] Get:50 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpam-modules-bin armhf 1.5.3-5ubuntu4 [47.1 kB] Get:51 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpam-modules armhf 1.5.3-5ubuntu4 [260 kB] Get:52 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libapt-pkg6.0t64 armhf 2.7.14build2 [986 kB] Get:53 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libnettle8t64 armhf 3.9.1-2.2build1 [187 kB] Get:54 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libhogweed6t64 armhf 3.9.1-2.2build1 [187 kB] Get:55 http://ftpmaster.internal/ubuntu noble/main armhf libp11-kit0 armhf 0.25.3-4ubuntu1 [258 kB] Get:56 http://ftpmaster.internal/ubuntu noble/main armhf libunistring5 armhf 1.1-2 [512 kB] Get:57 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgnutls30t64 armhf 3.8.3-1.1ubuntu3 [947 kB] Get:58 http://ftpmaster.internal/ubuntu noble-proposed/main armhf apt armhf 2.7.14build2 [1368 kB] Get:59 http://ftpmaster.internal/ubuntu noble-proposed/main armhf apt-utils armhf 2.7.14build2 [210 kB] Get:60 http://ftpmaster.internal/ubuntu noble-proposed/main armhf bzip2 armhf 1.0.8-5.1 [33.5 kB] Get:61 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libbz2-1.0 armhf 1.0.8-5.1 [31.1 kB] Get:62 http://ftpmaster.internal/ubuntu noble-proposed/main armhf zlib1g armhf 1:1.3.dfsg-3.1ubuntu2 [49.2 kB] Get:63 http://ftpmaster.internal/ubuntu noble/main armhf debconf-i18n all 1.5.86 [205 kB] Get:64 http://ftpmaster.internal/ubuntu noble/main armhf debconf all 1.5.86 [124 kB] Get:65 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpam0g armhf 1.5.3-5ubuntu4 [62.0 kB] Get:66 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libseccomp2 armhf 2.5.5-1ubuntu3 [49.5 kB] Get:67 http://ftpmaster.internal/ubuntu noble/main armhf libargon2-1 armhf 0~20190702+dfsg-4 [22.3 kB] Get:68 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libudev1 armhf 255.4-1ubuntu6 [166 kB] Get:69 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libdevmapper1.02.1 armhf 2:1.02.185-3ubuntu3 [135 kB] Get:70 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libuuid1 armhf 2.39.3-9ubuntu4 [34.6 kB] Get:71 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libfdisk1 armhf 2.39.3-9ubuntu4 [196 kB] Get:72 http://ftpmaster.internal/ubuntu noble-proposed/main armhf mount armhf 2.39.3-9ubuntu4 [134 kB] Get:73 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcom-err2 armhf 1.47.0-2.4~exp1ubuntu3 [21.9 kB] Get:74 http://ftpmaster.internal/ubuntu noble/main armhf libkeyutils1 armhf 1.6.3-3 [8120 B] Get:75 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libtirpc3t64 armhf 1.3.4+ds-1.1build1 [73.3 kB] Get:76 http://ftpmaster.internal/ubuntu noble/main armhf linux-libc-dev armhf 6.8.0-20.20 [1555 kB] Get:77 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gcc-14-base armhf 14-20240330-1ubuntu2 [47.4 kB] Get:78 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgcc-s1 armhf 14-20240330-1ubuntu2 [41.5 kB] Get:79 http://ftpmaster.internal/ubuntu noble-proposed/main armhf base-files armhf 13ubuntu9 [73.4 kB] Get:80 http://ftpmaster.internal/ubuntu noble-proposed/main armhf debianutils armhf 5.17build1 [89.0 kB] Get:81 http://ftpmaster.internal/ubuntu noble-proposed/main armhf bash armhf 5.2.21-2ubuntu4 [668 kB] Get:82 http://ftpmaster.internal/ubuntu noble-proposed/main armhf bsdutils armhf 1:2.39.3-9ubuntu4 [101 kB] Get:83 http://ftpmaster.internal/ubuntu noble-proposed/main armhf coreutils armhf 9.4-3ubuntu5 [1280 kB] Get:84 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libstdc++6 armhf 14-20240330-1ubuntu2 [714 kB] Get:85 http://ftpmaster.internal/ubuntu noble/main armhf libxxhash0 armhf 0.8.2-2 [31.3 kB] Get:86 http://ftpmaster.internal/ubuntu noble/main armhf libffi8 armhf 3.4.6-1 [21.0 kB] Get:87 http://ftpmaster.internal/ubuntu noble/main armhf libidn2-0 armhf 2.3.7-2 [96.1 kB] Get:88 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libdebconfclient0 armhf 0.271ubuntu3 [10.9 kB] Get:89 http://ftpmaster.internal/ubuntu noble/main armhf base-passwd armhf 3.6.3 [51.0 kB] Get:90 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsqlite3-0 armhf 3.45.1-1ubuntu2 [590 kB] Get:91 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gpg armhf 2.4.4-2ubuntu16 [524 kB] Get:92 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gpg-agent armhf 2.4.4-2ubuntu16 [235 kB] Get:93 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gpgconf armhf 2.4.4-2ubuntu16 [115 kB] Get:94 http://ftpmaster.internal/ubuntu noble-proposed/main armhf readline-common all 8.2-4build1 [56.5 kB] Get:95 http://ftpmaster.internal/ubuntu noble/main armhf libncursesw6 armhf 6.4+20240113-1ubuntu1 [118 kB] Get:96 http://ftpmaster.internal/ubuntu noble/main armhf libtinfo6 armhf 6.4+20240113-1ubuntu1 [90.5 kB] Get:97 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libreadline8t64 armhf 8.2-4build1 [129 kB] Get:98 http://ftpmaster.internal/ubuntu noble-proposed/main armhf pinentry-curses armhf 1.2.1-3ubuntu5 [36.7 kB] Get:99 http://ftpmaster.internal/ubuntu noble/main armhf init-system-helpers all 1.66ubuntu1 [39.4 kB] Get:100 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libnpth0t64 armhf 1.6-3.1build1 [6998 B] Get:101 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gpgv armhf 2.4.4-2ubuntu16 [224 kB] Get:102 http://ftpmaster.internal/ubuntu noble/main armhf ubuntu-keyring all 2023.11.28.1 [11.1 kB] Get:103 http://ftpmaster.internal/ubuntu noble/main armhf tar armhf 1.35+dfsg-3 [236 kB] Get:104 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dpkg armhf 1.22.6ubuntu6 [1230 kB] Get:105 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dash armhf 0.5.12-6ubuntu5 [80.8 kB] Get:106 http://ftpmaster.internal/ubuntu noble/main armhf diffutils armhf 1:3.10-1 [167 kB] Get:107 http://ftpmaster.internal/ubuntu noble/main armhf grep armhf 3.11-4 [166 kB] Get:108 http://ftpmaster.internal/ubuntu noble/main armhf gzip armhf 1.12-1ubuntu2 [95.8 kB] Get:109 http://ftpmaster.internal/ubuntu noble/main armhf hostname armhf 3.23+nmu2ubuntu1 [10.3 kB] Get:110 http://ftpmaster.internal/ubuntu noble/main armhf login armhf 1:4.13+dfsg1-4ubuntu1 [200 kB] Get:111 http://ftpmaster.internal/ubuntu noble/main armhf ncurses-bin armhf 6.4+20240113-1ubuntu1 [178 kB] Get:112 http://ftpmaster.internal/ubuntu noble/main armhf sed armhf 4.9-2 [198 kB] Get:113 http://ftpmaster.internal/ubuntu noble-proposed/main armhf util-linux armhf 2.39.3-9ubuntu4 [1216 kB] Get:114 http://ftpmaster.internal/ubuntu noble/main armhf ncurses-base all 6.4+20240113-1ubuntu1 [25.4 kB] Get:115 http://ftpmaster.internal/ubuntu noble/main armhf sysvinit-utils armhf 3.08-6ubuntu2 [33.7 kB] Get:116 http://ftpmaster.internal/ubuntu noble-proposed/main armhf logsave armhf 1.47.0-2.4~exp1ubuntu3 [21.9 kB] Get:117 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libext2fs2t64 armhf 1.47.0-2.4~exp1ubuntu3 [201 kB] Get:118 http://ftpmaster.internal/ubuntu noble-proposed/main armhf e2fsprogs armhf 1.47.0-2.4~exp1ubuntu3 [571 kB] Get:119 http://ftpmaster.internal/ubuntu noble-proposed/main armhf optipng armhf 0.7.8+ds-1build2 [109 kB] Get:120 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpng16-16t64 armhf 1.6.43-5build1 [166 kB] Get:121 http://ftpmaster.internal/ubuntu noble/main armhf init armhf 1.66ubuntu1 [6186 B] Get:122 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsmartcols1 armhf 2.39.3-9ubuntu4 [117 kB] Get:123 http://ftpmaster.internal/ubuntu noble-proposed/main armhf uuid-runtime armhf 2.39.3-9ubuntu4 [41.7 kB] Get:124 http://ftpmaster.internal/ubuntu noble/main armhf libattr1 armhf 1:2.5.2-1 [10.3 kB] Get:125 http://ftpmaster.internal/ubuntu noble/main armhf libmd0 armhf 1.1.0-2 [23.1 kB] Get:126 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpam-runtime all 1.5.3-5ubuntu4 [40.8 kB] Get:127 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsemanage-common all 3.5-1build5 [10.1 kB] Get:128 http://ftpmaster.internal/ubuntu noble/main armhf libsepol2 armhf 3.5-2 [262 kB] Get:129 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsemanage2 armhf 3.5-1build5 [84.5 kB] Get:130 http://ftpmaster.internal/ubuntu noble/main armhf passwd armhf 1:4.13+dfsg1-4ubuntu1 [817 kB] Get:131 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libproc2-0 armhf 2:4.0.4-4ubuntu3 [49.0 kB] Get:132 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libss2 armhf 1.47.0-2.4~exp1ubuntu3 [14.7 kB] Get:133 http://ftpmaster.internal/ubuntu noble/main armhf mawk armhf 1.3.4.20240123-1 [115 kB] Get:134 http://ftpmaster.internal/ubuntu noble-proposed/main armhf procps armhf 2:4.0.4-4ubuntu3 [700 kB] Get:135 http://ftpmaster.internal/ubuntu noble/main armhf sensible-utils all 0.0.22 [22.5 kB] Get:136 http://ftpmaster.internal/ubuntu noble/main armhf ca-certificates all 20240203 [159 kB] Get:137 http://ftpmaster.internal/ubuntu noble-proposed/main armhf krb5-locales all 1.20.1-6ubuntu2 [13.8 kB] Get:138 http://ftpmaster.internal/ubuntu noble/main armhf tzdata all 2024a-1ubuntu1 [273 kB] Get:139 http://ftpmaster.internal/ubuntu noble/main armhf bash-completion all 1:2.11-8 [180 kB] Get:140 http://ftpmaster.internal/ubuntu noble-proposed/main armhf bsdextrautils armhf 2.39.3-9ubuntu4 [78.7 kB] Get:141 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgpm2 armhf 1.20.7-11 [13.6 kB] Get:142 http://ftpmaster.internal/ubuntu noble/main armhf libip4tc2 armhf 1.8.10-3ubuntu1 [21.2 kB] Get:143 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libjansson4 armhf 2.14-2build2 [28.2 kB] Get:144 http://ftpmaster.internal/ubuntu noble-proposed/main armhf psmisc armhf 23.7-1build1 [176 kB] Get:145 http://ftpmaster.internal/ubuntu noble-proposed/main armhf xz-utils armhf 5.6.1+really5.4.5-1build1 [267 kB] Get:146 http://ftpmaster.internal/ubuntu noble/main armhf libctf0 armhf 2.42-4ubuntu2 [87.7 kB] Get:147 http://ftpmaster.internal/ubuntu noble/main armhf libctf-nobfd0 armhf 2.42-4ubuntu2 [88.0 kB] Get:148 http://ftpmaster.internal/ubuntu noble/main armhf binutils-arm-linux-gnueabihf armhf 2.42-4ubuntu2 [2925 kB] Get:149 http://ftpmaster.internal/ubuntu noble/main armhf libbinutils armhf 2.42-4ubuntu2 [460 kB] Get:150 http://ftpmaster.internal/ubuntu noble/main armhf binutils armhf 2.42-4ubuntu2 [3072 B] Get:151 http://ftpmaster.internal/ubuntu noble/main armhf binutils-common armhf 2.42-4ubuntu2 [217 kB] Get:152 http://ftpmaster.internal/ubuntu noble/main armhf libsframe1 armhf 2.42-4ubuntu2 [13.1 kB] Get:153 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libubsan1 armhf 14-20240330-1ubuntu2 [1153 kB] Get:154 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgomp1 armhf 14-20240330-1ubuntu2 [125 kB] Get:155 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libatomic1 armhf 14-20240330-1ubuntu2 [7846 B] Get:156 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libasan8 armhf 14-20240330-1ubuntu2 [2940 kB] Get:157 http://ftpmaster.internal/ubuntu noble-proposed/main armhf g++-13 armhf 13.2.0-23ubuntu3 [14.5 kB] Get:158 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gcc-13 armhf 13.2.0-23ubuntu3 [450 kB] Get:159 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libstdc++-13-dev armhf 13.2.0-23ubuntu3 [2455 kB] Get:160 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgcc-13-dev armhf 13.2.0-23ubuntu3 [899 kB] Get:161 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcc1-0 armhf 14-20240330-1ubuntu2 [39.1 kB] Get:162 http://ftpmaster.internal/ubuntu noble-proposed/main armhf cpp-13 armhf 13.2.0-23ubuntu3 [1034 B] Get:163 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gcc-13-base armhf 13.2.0-23ubuntu3 [48.6 kB] Get:164 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gcc-13-arm-linux-gnueabihf armhf 13.2.0-23ubuntu3 [16.8 MB] Get:165 http://ftpmaster.internal/ubuntu noble-proposed/main armhf g++-13-arm-linux-gnueabihf armhf 13.2.0-23ubuntu3 [9939 kB] Get:166 http://ftpmaster.internal/ubuntu noble-proposed/main armhf cpp-13-arm-linux-gnueabihf armhf 13.2.0-23ubuntu3 [8759 kB] Get:167 http://ftpmaster.internal/ubuntu noble/main armhf g++ armhf 4:13.2.0-7ubuntu1 [1090 B] Get:168 http://ftpmaster.internal/ubuntu noble/main armhf gcc armhf 4:13.2.0-7ubuntu1 [5022 B] Get:169 http://ftpmaster.internal/ubuntu noble/main armhf cpp armhf 4:13.2.0-7ubuntu1 [22.4 kB] Get:170 http://ftpmaster.internal/ubuntu noble/main armhf cpp-arm-linux-gnueabihf armhf 4:13.2.0-7ubuntu1 [5320 B] Get:171 http://ftpmaster.internal/ubuntu noble/main armhf gcc-arm-linux-gnueabihf armhf 4:13.2.0-7ubuntu1 [1220 B] Get:172 http://ftpmaster.internal/ubuntu noble/main armhf g++-arm-linux-gnueabihf armhf 4:13.2.0-7ubuntu1 [966 B] Get:173 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dpkg-dev all 1.22.6ubuntu6 [1074 kB] Get:174 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libdpkg-perl all 1.22.6ubuntu6 [268 kB] Get:175 http://ftpmaster.internal/ubuntu noble/main armhf lto-disabled-list all 47 [12.4 kB] Get:176 http://ftpmaster.internal/ubuntu noble/main armhf libfakeroot armhf 1.33-1 [28.7 kB] Get:177 http://ftpmaster.internal/ubuntu noble/main armhf fakeroot armhf 1.33-1 [68.6 kB] Preconfiguring packages ... 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Installing new version of config file /etc/security/namespace.init ... dpkg: libnettle8:armhf: dependency problems, but removing anyway as you requested: libhogweed6:armhf depends on libnettle8. libgnutls30:armhf depends on libnettle8 (>= 3.7~). (Reading database ... 14943 files and directories currently installed.) Removing libnettle8:armhf (3.9.1-2) ... dpkg: libapt-pkg6.0:armhf: dependency problems, but removing anyway as you requested: apt-utils depends on libapt-pkg6.0 (>= 2.7.3). apt depends on libapt-pkg6.0 (>= 2.7.3). Removing libapt-pkg6.0:armhf (2.7.3) ... dpkg: libgnutls30:armhf: dependency problems, but removing anyway as you requested: apt depends on libgnutls30 (>= 3.7.5). Removing libgnutls30:armhf (3.8.1-4ubuntu1) ... Selecting previously unselected package libapt-pkg6.0t64:armhf. (Reading database ... 14877 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0t64_2.7.14build2_armhf.deb ... Unpacking libapt-pkg6.0t64:armhf (2.7.14build2) ... 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(Reading database ... 14951 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.5.5-1ubuntu3_armhf.deb ... Unpacking libseccomp2:armhf (2.5.5-1ubuntu3) over (2.5.4-1ubuntu3) ... Setting up libseccomp2:armhf (2.5.5-1ubuntu3) ... (Reading database ... 14951 files and directories currently installed.) Preparing to unpack .../libargon2-1_0~20190702+dfsg-4_armhf.deb ... Unpacking libargon2-1:armhf (0~20190702+dfsg-4) over (0~20190702+dfsg-3) ... Preparing to unpack .../libudev1_255.4-1ubuntu6_armhf.deb ... Unpacking libudev1:armhf (255.4-1ubuntu6) over (253.5-1ubuntu6) ... Setting up libudev1:armhf (255.4-1ubuntu6) ... (Reading database ... 14951 files and directories currently installed.) Preparing to unpack .../libdevmapper1.02.1_2%3a1.02.185-3ubuntu3_armhf.deb ... Unpacking libdevmapper1.02.1:armhf (2:1.02.185-3ubuntu3) over (2:1.02.185-2ubuntu1) ... Preparing to unpack .../libuuid1_2.39.3-9ubuntu4_armhf.deb ... 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Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3 to /lib/arm-linux-gnueabihf/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0 to /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:armhf (1.3.4+ds-1.1build1) ... Preparing to unpack .../5-linux-libc-dev_6.8.0-20.20_armhf.deb ... Unpacking linux-libc-dev:armhf (6.8.0-20.20) over (6.5.0-9.9) ... Selecting previously unselected package gcc-14-base:armhf. Preparing to unpack .../6-gcc-14-base_14-20240330-1ubuntu2_armhf.deb ... Unpacking gcc-14-base:armhf (14-20240330-1ubuntu2) ... Setting up gcc-14-base:armhf (14-20240330-1ubuntu2) ... (Reading database ... 14977 files and directories currently installed.) Preparing to unpack .../libgcc-s1_14-20240330-1ubuntu2_armhf.deb ... Unpacking libgcc-s1:armhf (14-20240330-1ubuntu2) over (13.2.0-4ubuntu3) ... Setting up libgcc-s1:armhf (14-20240330-1ubuntu2) ... 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Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8 to /lib/arm-linux-gnueabihf/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8.2 to /lib/arm-linux-gnueabihf/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8 to /lib/arm-linux-gnueabihf/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8.2 to /lib/arm-linux-gnueabihf/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:armhf (8.2-4build1) ... Preparing to unpack .../pinentry-curses_1.2.1-3ubuntu5_armhf.deb ... Unpacking pinentry-curses (1.2.1-3ubuntu5) over (1.2.1-1ubuntu1) ... Preparing to unpack .../init-system-helpers_1.66ubuntu1_all.deb ... Unpacking init-system-helpers (1.66ubuntu1) over (1.65.2ubuntu1) ... Setting up init-system-helpers (1.66ubuntu1) ... 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Adding 'diversion of /lib/arm-linux-gnueabihf/libe2p.so.2 to /lib/arm-linux-gnueabihf/libe2p.so.2.usr-is-merged by libext2fs2t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libe2p.so.2.3 to /lib/arm-linux-gnueabihf/libe2p.so.2.3.usr-is-merged by libext2fs2t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libext2fs.so.2 to /lib/arm-linux-gnueabihf/libext2fs.so.2.usr-is-merged by libext2fs2t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libext2fs.so.2.4 to /lib/arm-linux-gnueabihf/libext2fs.so.2.4.usr-is-merged by libext2fs2t64' Unpacking libext2fs2t64:armhf (1.47.0-2.4~exp1ubuntu3) ... Setting up libcom-err2:armhf (1.47.0-2.4~exp1ubuntu3) ... Setting up libext2fs2t64:armhf (1.47.0-2.4~exp1ubuntu3) ... (Reading database ... 14978 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.47.0-2.4~exp1ubuntu3_armhf.deb ... 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Setting up libfdisk1:armhf (2.39.3-9ubuntu4) ... Setting up libkmod2:armhf (31+20240202-2ubuntu5) ... Setting up libsystemd-shared:armhf (255.4-1ubuntu6) ... Setting up systemd-dev (255.4-1ubuntu6) ... Setting up mount (2.39.3-9ubuntu4) ... Setting up systemd (255.4-1ubuntu6) ... Installing new version of config file /etc/systemd/journald.conf ... Installing new version of config file /etc/systemd/logind.conf ... Installing new version of config file /etc/systemd/networkd.conf ... Installing new version of config file /etc/systemd/pstore.conf ... Installing new version of config file /etc/systemd/sleep.conf ... Installing new version of config file /etc/systemd/system.conf ... Installing new version of config file /etc/systemd/user.conf ... Initializing machine ID from random generator. Setting up systemd-sysv (255.4-1ubuntu6) ... (Reading database ... 14977 files and directories currently installed.) Preparing to unpack .../init_1.66ubuntu1_armhf.deb ... 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Setting up libc6-dev:armhf (2.39-0ubuntu8) ... Setting up binutils-arm-linux-gnueabihf (2.42-4ubuntu2) ... Setting up gpg (2.4.4-2ubuntu16) ... Setting up cpp-arm-linux-gnueabihf (4:13.2.0-7ubuntu1) ... Setting up libstdc++-13-dev:armhf (13.2.0-23ubuntu3) ... Setting up gpg-agent (2.4.4-2ubuntu16) ... Setting up cpp-13 (13.2.0-23ubuntu3) ... Setting up libtirpc3t64:armhf (1.3.4+ds-1.1build1) ... Setting up binutils (2.42-4ubuntu2) ... Setting up gcc-13-arm-linux-gnueabihf (13.2.0-23ubuntu3) ... Setting up dpkg-dev (1.22.6ubuntu6) ... Setting up libtirpc-dev:armhf (1.3.4+ds-1.1build1) ... Setting up gcc-13 (13.2.0-23ubuntu3) ... Setting up cpp (4:13.2.0-7ubuntu1) ... Setting up libnsl2:armhf (1.3.0-3build3) ... Setting up gcc-arm-linux-gnueabihf (4:13.2.0-7ubuntu1) ... Setting up g++-13-arm-linux-gnueabihf (13.2.0-23ubuntu3) ... Setting up g++-arm-linux-gnueabihf (4:13.2.0-7ubuntu1) ... Setting up g++-13 (13.2.0-23ubuntu3) ... Setting up libnss-nisplus:armhf (1.3-5build1) ... Setting up gcc (4:13.2.0-7ubuntu1) ... Setting up g++ (4:13.2.0-7ubuntu1) ... Setting up libnsl-dev:armhf (1.3.0-3build3) ... Processing triggers for libc-bin (2.39-0ubuntu8) ... Processing triggers for debianutils (5.17build1) ... (Reading database ... 15022 files and directories currently installed.) Purging configuration files for libssl3:armhf (3.0.10-1ubuntu2) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-28001942 armhf noble-proposed -c chroot:build-PACKAGEBUILD-28001942 --arch=armhf --dist=noble-proposed --nolog fastqtl_2.184+v7+dfsg-4build3.dsc Initiating build PACKAGEBUILD-28001942 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-173-generic #191-Ubuntu SMP Fri Feb 2 13:54:37 UTC 2024 armv7l sbuild (Debian sbuild) 0.79.0 (05 February 2020) on bos02-arm64-070.buildd +==============================================================================+ | fastqtl 2.184+v7+dfsg-4build3 (armhf) Mon, 01 Apr 2024 14:09:51 +0000 | +==============================================================================+ Package: fastqtl Version: 2.184+v7+dfsg-4build3 Source Version: 2.184+v7+dfsg-4build3 Distribution: noble-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-28001942/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/fastqtl-tWp0dP/resolver-FuDV1X' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- fastqtl_2.184+v7+dfsg-4build3.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/fastqtl-tWp0dP/fastqtl-2.184+v7+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/fastqtl-tWp0dP' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-python, python3, libboost-dev, libboost-iostreams-dev, libboost-program-options-dev, libgsl-dev, r-mathlib, zlib1g-dev, libblas-dev, libeigen3-dev, libhts-dev, libbz2-dev, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), dh-python, python3, libboost-dev, libboost-iostreams-dev, libboost-program-options-dev, libgsl-dev, r-mathlib, zlib1g-dev, libblas-dev, libeigen3-dev, libhts-dev, libbz2-dev, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [442 B] Get:5 copy:/<>/apt_archive ./ Packages [524 B] Fetched 1923 B in 0s (51.9 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: apt-utils bash-completion ca-certificates debconf-i18n krb5-locales libgpg-error-l10n libgpm2 libip4tc2 liblocale-gettext-perl libnsl-dev libnsl2 libnss-nis libnss-nisplus libtext-charwidth-perl libtext-iconv-perl libtext-wrapi18n-perl libtirpc-common libtirpc-dev libtirpc3t64 libunistring2 openssl perl-modules-5.36 psmisc uuid-runtime Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl libblas-dev libblas3 libboost-dev libboost-iostreams-dev libboost-iostreams1.83-dev libboost-iostreams1.83.0 libboost-program-options-dev libboost-program-options1.83-dev libboost-program-options1.83.0 libboost-regex1.83-dev libboost-regex1.83.0 libboost1.83-dev libbrotli1 libbz2-dev libcurl3t64-gnutls libcurl4-gnutls-dev libdebhelper-perl libdeflate-dev libdeflate0 libdw1t64 libeigen3-dev libelf1t64 libexpat1 libfile-stripnondeterminism-perl libgsl-dev libgsl27 libgslcblas0 libhts-dev libhts3t64 libhtscodecs2 libicu-dev libicu74 libldap2 liblzma-dev libmagic-mgc libmagic1t64 libnghttp2-14 libpipeline1 libpkgconf3 libpsl5t64 libpython3-stdlib libpython3.12-minimal libpython3.12-stdlib librtmp1 libsasl2-2 libsasl2-modules-db libssh-4 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db media-types netbase pkg-config pkgconf pkgconf-bin po-debconf python3 python3-minimal python3-pkg-resources python3-setuptools python3.12 python3.12-minimal r-mathlib zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make flit python3-build python3-installer python3-wheel gettext-doc libasprintf-dev libgettextpo-dev groff liblapack-doc libboost-doc libboost1.83-doc libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev libboost-context1.83-dev libboost-contract1.83-dev libboost-coroutine1.83-dev libboost-date-time1.83-dev libboost-exception1.83-dev libboost-fiber1.83-dev libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev libboost-graph1.83-dev libboost-json1.83-dev libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev libboost-numpy1.83-dev libboost-python1.83-dev libboost-random1.83-dev libboost-serialization1.83-dev libboost-stacktrace1.83-dev libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev libcurl4-doc libgnutls28-dev libidn-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev libeigen3-doc gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html icu-doc liblzma-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python-setuptools-doc python3.12-venv python3.12-doc binfmt-support Recommended packages: curl | wget | lynx bzip2-doc libarchive-cpio-perl libldap-common publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl r-base-core r-base-dev The following NEW packages will be installed: autoconf automake autopoint autotools-dev debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl libblas-dev libblas3 libboost-dev libboost-iostreams-dev libboost-iostreams1.83-dev libboost-iostreams1.83.0 libboost-program-options-dev libboost-program-options1.83-dev libboost-program-options1.83.0 libboost-regex1.83-dev libboost-regex1.83.0 libboost1.83-dev libbrotli1 libbz2-dev libcurl3t64-gnutls libcurl4-gnutls-dev libdebhelper-perl libdeflate-dev libdeflate0 libdw1t64 libeigen3-dev libelf1t64 libexpat1 libfile-stripnondeterminism-perl libgsl-dev libgsl27 libgslcblas0 libhts-dev libhts3t64 libhtscodecs2 libicu-dev libicu74 libldap2 liblzma-dev libmagic-mgc libmagic1t64 libnghttp2-14 libpipeline1 libpkgconf3 libpsl5t64 libpython3-stdlib libpython3.12-minimal libpython3.12-stdlib librtmp1 libsasl2-2 libsasl2-modules-db libssh-4 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db media-types netbase pkg-config pkgconf pkgconf-bin po-debconf python3 python3-minimal python3-pkg-resources python3-setuptools python3.12 python3.12-minimal r-mathlib sbuild-build-depends-main-dummy zlib1g-dev 0 upgraded, 85 newly installed, 0 to remove and 0 not upgraded. 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Fetched 59.5 MB in 15s (4083 kB/s) Selecting previously unselected package libpython3.12-minimal:armhf. (Reading database ... 15022 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.2-4build4_armhf.deb ... Unpacking libpython3.12-minimal:armhf (3.12.2-4build4) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../libexpat1_2.6.1-2build1_armhf.deb ... Unpacking libexpat1:armhf (2.6.1-2build1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.2-4build4_armhf.deb ... Unpacking python3.12-minimal (3.12.2-4build4) ... Setting up libpython3.12-minimal:armhf (3.12.2-4build4) ... Setting up libexpat1:armhf (2.6.1-2build1) ... Setting up python3.12-minimal (3.12.2-4build4) ... Selecting previously unselected package python3-minimal. (Reading database ... 15340 files and directories currently installed.) 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Setting up libblas3:armhf (3.12.0-3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Setting up libpkgconf3:armhf (1.8.1-2) ... Setting up libboost-program-options-dev:armhf (1.83.0.1ubuntu2) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2build7) ... Setting up libboost-iostreams1.83.0:armhf (1.83.0-2.1ubuntu2) ... Setting up autopoint (0.21-14ubuntu1) ... Setting up pkgconf-bin (1.8.1-2) ... Setting up libsasl2-2:armhf (2.1.28+dfsg1-5ubuntu2) ... Setting up libssh-4:armhf (0.10.6-2build2) ... Setting up autoconf (2.71-3) ... Setting up liblzma-dev:armhf (5.6.1+really5.4.5-1build1) ... Setting up libicu74:armhf (74.2-1ubuntu1) ... Setting up zlib1g-dev:armhf (1:1.3.dfsg-3.1ubuntu2) ... Setting up dwz (0.15-1build6) ... Setting up libuchardet0:armhf (0.0.8-1) ... Setting up debugedit (1:5.0-5build1) ... Setting up r-mathlib (4.3.3-2build1) ... Setting up libsub-override-perl (0.10-1) ... Setting up netbase (6.4) ... Setting up libboost-dev:armhf (1.83.0.1ubuntu2) ... Setting up libdeflate-dev:armhf (1.19-1) ... Setting up libxml2:armhf (2.9.14+dfsg-1.3ubuntu3) ... Setting up libldap2:armhf (2.6.7+dfsg-1~exp1ubuntu6) ... Setting up libblas-dev:armhf (3.12.0-3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode Setting up libbz2-dev:armhf (1.0.8-5.1) ... Setting up automake (1:1.16.5-1.3ubuntu1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-14ubuntu1) ... Setting up libgsl-dev (2.7.1+dfsg-6ubuntu1) ... Setting up libpython3.12-stdlib:armhf (3.12.2-4build4) ... Setting up libtool (2.4.7-7) ... Setting up python3.12 (3.12.2-4build4) ... Setting up libcurl3t64-gnutls:armhf (8.5.0-2ubuntu9) ... Setting up libcurl4-gnutls-dev:armhf (8.5.0-2ubuntu9) ... Setting up pkgconf:armhf (1.8.1-2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libeigen3-dev (3.4.0-4) ... Setting up icu-devtools (74.2-1ubuntu1) ... Setting up pkg-config:armhf (1.8.1-2) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-3build2) ... Setting up libhts3t64:armhf (1.19+ds-1.1build3) ... Setting up libicu-dev:armhf (74.2-1ubuntu1) ... Setting up libpython3-stdlib:armhf (3.12.2-0ubuntu2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhts-dev:armhf (1.19+ds-1.1build3) ... Setting up python3 (3.12.2-0ubuntu2) ... Setting up man-db (2.12.0-4build1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /usr/lib/systemd/system/man-db.timer. Setting up libboost-regex1.83-dev:armhf (1.83.0-2.1ubuntu2) ... Setting up python3-pkg-resources (68.1.2-2ubuntu1) ... Setting up python3-setuptools (68.1.2-2ubuntu1) ... Setting up libboost-iostreams1.83-dev:armhf (1.83.0-2.1ubuntu2) ... Setting up debhelper (13.14.1ubuntu5) ... Setting up libboost-iostreams-dev:armhf (1.83.0.1ubuntu2) ... Setting up dh-python (6.20231223ubuntu2) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for systemd (255.4-1ubuntu6) ... Processing triggers for libc-bin (2.39-0ubuntu8) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-173-generic #191-Ubuntu SMP Fri Feb 2 13:54:37 UTC 2024 arm64 (armv7l) Toolchain package versions: binutils_2.42-4ubuntu2 dpkg-dev_1.22.6ubuntu6 g++-13_13.2.0-23ubuntu3 gcc-13_13.2.0-23ubuntu3 libc6-dev_2.39-0ubuntu8 libstdc++-13-dev_13.2.0-23ubuntu3 libstdc++6_14-20240330-1ubuntu2 linux-libc-dev_6.8.0-20.20 Package versions: adduser_3.137ubuntu1 advancecomp_2.5-1 apt_2.7.14build2 apt-utils_2.7.14build2 autoconf_2.71-3 automake_1:1.16.5-1.3ubuntu1 autopoint_0.21-14ubuntu1 autotools-dev_20220109.1 base-files_13ubuntu9 base-passwd_3.6.3 bash_5.2.21-2ubuntu4 bash-completion_1:2.11-8 binutils_2.42-4ubuntu2 binutils-arm-linux-gnueabihf_2.42-4ubuntu2 binutils-common_2.42-4ubuntu2 bsdextrautils_2.39.3-9ubuntu4 bsdutils_1:2.39.3-9ubuntu4 build-essential_12.10ubuntu1 bzip2_1.0.8-5.1 ca-certificates_20240203 coreutils_9.4-3ubuntu5 cpp_4:13.2.0-7ubuntu1 cpp-13_13.2.0-23ubuntu3 cpp-13-arm-linux-gnueabihf_13.2.0-23ubuntu3 cpp-arm-linux-gnueabihf_4:13.2.0-7ubuntu1 dash_0.5.12-6ubuntu5 debconf_1.5.86 debconf-i18n_1.5.86 debhelper_13.14.1ubuntu5 debianutils_5.17build1 debugedit_1:5.0-5build1 dh-autoreconf_20 dh-python_6.20231223ubuntu2 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dpkg_1.22.6ubuntu6 dpkg-dev_1.22.6ubuntu6 dwz_0.15-1build6 e2fsprogs_1.47.0-2.4~exp1ubuntu3 fakeroot_1.33-1 file_1:5.45-3build1 findutils_4.9.0-5 g++_4:13.2.0-7ubuntu1 g++-13_13.2.0-23ubuntu3 g++-13-arm-linux-gnueabihf_13.2.0-23ubuntu3 g++-arm-linux-gnueabihf_4:13.2.0-7ubuntu1 gcc_4:13.2.0-7ubuntu1 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python3-minimal_3.12.2-0ubuntu2 python3-pkg-resources_68.1.2-2ubuntu1 python3-setuptools_68.1.2-2ubuntu1 python3.12_3.12.2-4build4 python3.12-minimal_3.12.2-4build4 r-mathlib_4.3.3-2build1 readline-common_8.2-4build1 rpcsvc-proto_1.4.2-0ubuntu6 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.22 systemd_255.4-1ubuntu6 systemd-dev_255.4-1ubuntu6 systemd-sysv_255.4-1ubuntu6 sysvinit-utils_3.08-6ubuntu2 tar_1.35+dfsg-3 tzdata_2024a-1ubuntu1 ubuntu-keyring_2023.11.28.1 util-linux_2.39.3-9ubuntu4 uuid-runtime_2.39.3-9ubuntu4 xz-utils_5.6.1+really5.4.5-1build1 zlib1g_1:1.3.dfsg-3.1ubuntu2 zlib1g-dev_1:1.3.dfsg-3.1ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: fastqtl Binary: fastqtl, fastqtl-doc Architecture: any all Version: 2.184+v7+dfsg-4build3 Maintainer: Ubuntu Developers Uploaders: Dylan Aïssi , Étienne Mollier Homepage: http://fastqtl.sourceforge.net/ Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/fastqtl Vcs-Git: https://salsa.debian.org/med-team/fastqtl.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), dh-python, python3, libboost-dev, libboost-iostreams-dev, libboost-program-options-dev, libgsl-dev, r-mathlib, zlib1g-dev, libblas-dev, libeigen3-dev, libhts-dev, libbz2-dev Package-List: fastqtl deb science optional arch=any fastqtl-doc deb doc optional arch=all Checksums-Sha1: afda0774d21c6c870b5bf319751f46a641d1dd12 17128664 fastqtl_2.184+v7+dfsg.orig.tar.xz d9f48bb4492d8b9db57a67652e32b5c37fed2eac 21168 fastqtl_2.184+v7+dfsg-4build3.debian.tar.xz Checksums-Sha256: a16310e5cc00873707decb7dad8acd9d5ae22bf4ade1fdbba3a99afc650a6232 17128664 fastqtl_2.184+v7+dfsg.orig.tar.xz 07534edfc20b1412f3605c0c5a9bc000f2bab5f3c53195bdf771b570fbdccb88 21168 fastqtl_2.184+v7+dfsg-4build3.debian.tar.xz Files: 0315c13229da6648d451f9025370a919 17128664 fastqtl_2.184+v7+dfsg.orig.tar.xz 620c31ffc1202edb2d762cece504687e 21168 fastqtl_2.184+v7+dfsg-4build3.debian.tar.xz Original-Maintainer: Debian Med Packaging Team -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEoIn7Nqr72tWswTJQafeQFxohCYQFAmYKSmIACgkQafeQFxoh CYRy8g/+Lz14bJjWi+RbNi9a7VbFVh5yfYrriKDgY6Gkd7JvZmRYB+cRppQlzhDW YfGWMlRGRDLtS6z3oXn1pGOiQrlkKN7vTQe4qSHY+d7iKJC5uKG3p3PSSVOalftr QpLca2Ltbcn+IkK1QGtgGs0jnn9giVZorgtUmej2co0/S8mzJTcdzG/XdzxrLAMb fKmU/gfr9Y7MPBfPV27LP+KUGY7shSUzi0TVJ9xjG7xlBjkRCwA00FPDDSnOR1w3 x5isnK+H1U+wIeDxrZsWYo+Y9xnSWNsJvcKYYgXlJvKzZfxRTMSYJ9VhgL1nW8vt SpbRqLCFnkSS5gPH+cDi6kcnO5ezfs1vsZ3jFgVAtoZa8WGGgsLPKRNV780kdh0R zyPD4IeCOwZHW5pVYp0WCZ6rf+rdniC1s6GXRCP4FK0wQwSBYW9TUrJrLbuiF4wr mXgXVwhpzHEftYvVe+2TT82rUHKS1tmE3Lx8lJaEr1+PFbmzp7Gvm1dr+Q6L6JQx vk36/FWyw5hu3dT/qXV12Vl2pi5ZwqZpSZawrJpij8pJBI3w6ypoF28cGyrgHOKA 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for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-28001942 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-28001942 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-28001942 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package fastqtl dpkg-buildpackage: info: source version 2.184+v7+dfsg-4build3 dpkg-buildpackage: info: source distribution noble dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --with python3 dh_auto_clean make -j4 clean make[1]: Entering directory '/<>' rm -f obj/*.o bin/fastQTL make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch --with python3 dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>' mkdir -p /<>/obj/ mkdir -p /<>/bin/ dh_auto_build -- CXXFLAGS='-g -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/fastqtl-2.184+v7+dfsg-4build3 -std=c++14' make -j4 "INSTALL=install --strip-program=true" "CXXFLAGS=-g -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/fastqtl-2.184+v7+dfsg-4build3 -std=c++14" make[2]: Entering directory '/<>' g++ -std=c++11 -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/fastqtl-2.184+v7+dfsg-4build3 -std=c++14 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -o obj/analysisMapping.o -c src/analysisMapping.cpp -Isrc g++ -std=c++11 -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/fastqtl-2.184+v7+dfsg-4build3 -std=c++14 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -o obj/analysisNominal.o -c src/analysisNominal.cpp -Isrc g++ -std=c++11 -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/fastqtl-2.184+v7+dfsg-4build3 -std=c++14 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -o obj/analysisNominalBest.o -c src/analysisNominalBest.cpp -Isrc g++ -std=c++11 -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/fastqtl-2.184+v7+dfsg-4build3 -std=c++14 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -o obj/analysisPermutation.o -c src/analysisPermutation.cpp -Isrc src/analysisPermutation.cpp: In member function ‘void data::runPermutation(std::string, std::vector)’: src/analysisPermutation.cpp:75:27: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 75 | random_shuffle(phenotype_curr.begin(), phenotype_curr.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from src/utils/utils.h:54, from src/data.h:25, from src/analysisPermutation.cpp:17: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from src/analysisNominal.cpp:17: src/data.h: In member function ‘double data::getCorrelation(std::vector&, std::vector&)’: src/data.h:180:22: warning: this statement may fall through [-Wimplicit-fallthrough=] 180 | case 3: sum0 += vec1[i+2] * vec2[i+2]; src/data.h:181:9: note: here 181 | case 2: sum0 += vec1[i+1] * vec2[i+1]; | ^~~~ src/data.h:181:22: warning: this statement may fall through [-Wimplicit-fallthrough=] 181 | case 2: sum0 += vec1[i+1] * vec2[i+1]; src/data.h:182:9: note: here 182 | case 1: sum0 += vec1[i+0] * vec2[i+0]; | ^~~~ In file included from src/analysisMapping.cpp:17: src/data.h: In member function ‘double data::getCorrelation(std::vector&, std::vector&)’: src/data.h:180:22: warning: this statement may fall through [-Wimplicit-fallthrough=] 180 | case 3: sum0 += vec1[i+2] * vec2[i+2]; src/data.h:181:9: note: here 181 | case 2: sum0 += vec1[i+1] * vec2[i+1]; | ^~~~ src/data.h:181:22: warning: this statement may fall through [-Wimplicit-fallthrough=] 181 | case 2: sum0 += vec1[i+1] * vec2[i+1]; src/data.h:182:9: note: here 182 | case 1: sum0 += vec1[i+0] * vec2[i+0]; | ^~~~ In file included from src/analysisNominalBest.cpp:17: src/data.h: In member function ‘double data::getCorrelation(std::vector&, std::vector&)’: src/data.h:180:22: warning: this statement may fall through [-Wimplicit-fallthrough=] 180 | case 3: sum0 += vec1[i+2] * vec2[i+2]; src/data.h:181:9: note: here 181 | case 2: sum0 += vec1[i+1] * vec2[i+1]; | ^~~~ src/data.h:181:22: warning: this statement may fall through [-Wimplicit-fallthrough=] 181 | case 2: sum0 += vec1[i+1] * vec2[i+1]; src/data.h:182:9: note: here 182 | case 1: sum0 += vec1[i+0] * vec2[i+0]; | ^~~~ src/data.h: In member function ‘double data::getCorrelation(std::vector&, std::vector&)’: src/data.h:180:22: warning: this statement may fall through [-Wimplicit-fallthrough=] 180 | case 3: sum0 += vec1[i+2] * vec2[i+2]; src/data.h:181:9: note: here 181 | case 2: sum0 += vec1[i+1] * vec2[i+1]; | ^~~~ src/data.h:181:22: warning: this statement may fall through [-Wimplicit-fallthrough=] 181 | case 2: sum0 += vec1[i+1] * vec2[i+1]; src/data.h:182:9: note: here 182 | case 1: sum0 += vec1[i+0] * vec2[i+0]; | ^~~~ In file included from /usr/include/c++/13/vector:72, from src/utils/utils.h:46: /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 g++ -std=c++11 -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/fastqtl-2.184+v7+dfsg-4build3 -std=c++14 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -o obj/analysisPermutationInteraction.o -c src/analysisPermutationInteraction.cpp -Isrc g++ -std=c++11 -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/fastqtl-2.184+v7+dfsg-4build3 -std=c++14 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -o obj/analysisPermutationPerGroup.o -c src/analysisPermutationPerGroup.cpp -Isrc In file included from /usr/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void data::runPermutation(std::string, std::vector)’ at src/analysisPermutation.cpp:83:31: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘void data::runPermutation(std::string, std::vector)’ at src/analysisPermutation.cpp:104:79: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=c++11 -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/fastqtl-2.184+v7+dfsg-4build3 -std=c++14 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -o obj/analysisPermutationSequence.o -c src/analysisPermutationSequence.cpp -Isrc g++ -std=c++11 -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/fastqtl-2.184+v7+dfsg-4build3 -std=c++14 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -o obj/commands.o -c src/commands.cpp -Isrc src/analysisPermutationInteraction.cpp: In member function ‘void data::runPermutationInteraction(std::string, int)’: src/analysisPermutationInteraction.cpp:48:39: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 48 | random_shuffle(permuted_phenotypes[perm].begin(), permuted_phenotypes[perm].end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from src/utils/utils.h:54, from src/data.h:25, from src/analysisPermutationInteraction.cpp:17: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ src/analysisPermutationInteraction.cpp:76:47: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 76 | random_shuffle(phenotype_curr.begin(), phenotype_curr.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ src/data.h: In member function ‘double data::getCorrelation(std::vector&, std::vector&)’: src/data.h:180:22: warning: this statement may fall through [-Wimplicit-fallthrough=] 180 | case 3: sum0 += vec1[i+2] * vec2[i+2]; src/data.h:181:9: note: here 181 | case 2: sum0 += vec1[i+1] * vec2[i+1]; | ^~~~ src/data.h:181:22: warning: this statement may fall through [-Wimplicit-fallthrough=] 181 | case 2: sum0 += vec1[i+1] * vec2[i+1]; src/data.h:182:9: note: here 182 | case 1: sum0 += vec1[i+0] * vec2[i+0]; | ^~~~ In file included from src/analysisPermutationPerGroup.cpp:17: src/data.h: In member function ‘double data::getCorrelation(std::vector&, std::vector&)’: src/data.h:180:22: warning: this statement may fall through [-Wimplicit-fallthrough=] 180 | case 3: sum0 += vec1[i+2] * vec2[i+2]; src/data.h:181:9: note: here 181 | case 2: sum0 += vec1[i+1] * vec2[i+1]; | ^~~~ src/data.h:181:22: warning: this statement may fall through [-Wimplicit-fallthrough=] 181 | case 2: sum0 += vec1[i+1] * vec2[i+1]; src/data.h:182:9: note: here 182 | case 1: sum0 += vec1[i+0] * vec2[i+0]; | ^~~~ In file included from /usr/include/c++/13/vector:72, from src/utils/utils.h:46, from src/data.h:25: /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from src/analysisPermutationSequence.cpp:17: src/data.h: In member function ‘double data::getCorrelation(std::vector&, std::vector&)’: src/data.h:180:22: warning: this statement may fall through [-Wimplicit-fallthrough=] 180 | case 3: sum0 += vec1[i+2] * vec2[i+2]; src/data.h:181:9: note: here 181 | case 2: sum0 += vec1[i+1] * vec2[i+1]; | ^~~~ src/data.h:181:22: warning: this statement may fall through [-Wimplicit-fallthrough=] 181 | case 2: sum0 += vec1[i+1] * vec2[i+1]; src/data.h:182:9: note: here 182 | case 1: sum0 += vec1[i+0] * vec2[i+0]; | ^~~~ In file included from /usr/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void data::runPermutationPerGroup(std::string, std::vector)’ at src/analysisPermutationPerGroup.cpp:107:22: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘void data::runPermutationPerGroup(std::string, std::vector)’ at src/analysisPermutationPerGroup.cpp:128:70: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72, from src/utils/utils.h:46, from src/data.h:25: /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 g++ -std=c++11 -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/fastqtl-2.184+v7+dfsg-4build3 -std=c++14 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -o obj/df.o -c src/df.cpp -Isrc In file included from /usr/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void data::runPermutation(std::string, std::string)’ at src/analysisPermutationSequence.cpp:89:22: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘void data::runPermutation(std::string, std::string)’ at src/analysisPermutationSequence.cpp:105:70: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=c++11 -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/fastqtl-2.184+v7+dfsg-4build3 -std=c++14 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -o obj/fastQTL.o -c src/fastQTL.cpp -Isrc g++ -std=c++11 -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/fastqtl-2.184+v7+dfsg-4build3 -std=c++14 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -o obj/management.o -c src/management.cpp -Isrc g++ -std=c++11 -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/fastqtl-2.184+v7+dfsg-4build3 -std=c++14 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -o obj/mle.o -c src/mle.cpp -Isrc g++ -std=c++11 -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/fastqtl-2.184+v7+dfsg-4build3 -std=c++14 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -o obj/readCovariates.o -c src/readCovariates.cpp -Isrc In file included from src/management.cpp:20: src/data.h: In member function ‘double data::getCorrelation(std::vector&, std::vector&)’: src/data.h:180:22: warning: this statement may fall through [-Wimplicit-fallthrough=] 180 | case 3: sum0 += vec1[i+2] * vec2[i+2]; src/data.h:181:9: note: here 181 | case 2: sum0 += vec1[i+1] * vec2[i+1]; | ^~~~ src/data.h:181:22: warning: this statement may fall through [-Wimplicit-fallthrough=] 181 | case 2: sum0 += vec1[i+1] * vec2[i+1]; src/data.h:182:9: note: here 182 | case 1: sum0 += vec1[i+0] * vec2[i+0]; | ^~~~ g++ -std=c++11 -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/fastqtl-2.184+v7+dfsg-4build3 -std=c++14 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -o obj/readGenotypes.o -c src/readGenotypes.cpp -Isrc g++ -std=c++11 -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/fastqtl-2.184+v7+dfsg-4build3 -std=c++14 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -o obj/readGroups.o -c src/readGroups.cpp -Isrc g++ -std=c++11 -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/fastqtl-2.184+v7+dfsg-4build3 -std=c++14 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -o obj/readInclusionsExclusions.o -c src/readInclusionsExclusions.cpp -Isrc g++ -std=c++11 -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/fastqtl-2.184+v7+dfsg-4build3 -std=c++14 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -o obj/readInteractions.o -c src/readInteractions.cpp -Isrc g++ -std=c++11 -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/fastqtl-2.184+v7+dfsg-4build3 -std=c++14 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -o obj/readPhenotypes.o -c src/readPhenotypes.cpp -Isrc g++ -std=c++11 -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/fastqtl-2.184+v7+dfsg-4build3 -std=c++14 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -o obj/readThresholds.o -c src/readThresholds.cpp -Isrc g++ -std=c++11 -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/fastqtl-2.184+v7+dfsg-4build3 -std=c++14 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -o obj/residualizer.o -c src/residualizer.cpp -Isrc g++ -std=c++11 -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/fastqtl-2.184+v7+dfsg-4build3 -std=c++14 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -o obj/tabix.o -c src/utils/tabix.cpp -Isrc src/utils/tabix.cpp: In constructor ‘Tabix::Tabix(std::string&)’: src/utils/tabix.cpp:17:22: warning: ‘int bgzf_is_bgzf(const char*)’ is deprecated: Use bgzf_compression() or hts_detect_format() instead [-Wdeprecated-declarations] 17 | if ( bgzf_is_bgzf(cfilename)!=1 ) | ~~~~~~~~~~~~^~~~~~~~~~~ In file included from src/utils/tabix.hpp:12, from src/utils/tabix.cpp:6: /usr/include/htslib/bgzf.h:270:9: note: declared here 270 | int bgzf_is_bgzf(const char *fn) HTS_DEPRECATED("Use bgzf_compression() or hts_detect_format() instead"); | ^~~~~~~~~~~~ g++ -std=c++11 -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/fastqtl-2.184+v7+dfsg-4build3 -std=c++14 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -o obj/utils.o -c src/utils/utils.cpp -Isrc src/utils/utils.cpp: In function ‘void putils::random_shuffle(std::vector >&)’: src/utils/utils.cpp:133:31: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 133 | random_shuffle(O.begin(), O.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from src/utils/utils.h:54, from src/utils/utils.cpp:17: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ g++ -std=c++11 -O3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now obj/analysisMapping.o obj/analysisNominal.o obj/analysisNominalBest.o obj/analysisPermutation.o obj/analysisPermutationInteraction.o obj/analysisPermutationPerGroup.o obj/analysisPermutationSequence.o obj/commands.o obj/df.o obj/fastQTL.o obj/management.o obj/mle.o obj/readCovariates.o obj/readGenotypes.o obj/readGroups.o obj/readInclusionsExclusions.o obj/readInteractions.o obj/readPhenotypes.o obj/readThresholds.o obj/residualizer.o obj/tabix.o obj/utils.o -lRmath -lhts -lm -lz -lbz2 -lboost_iostreams -lboost_program_options -lgslcblas -lgsl -lblas -o bin/fastQTL make[2]: Leaving directory '/<>' cd /<>/example/ && \ tar Jcvf examples.tar.xz * --sort=name --mode=go=rX,u+rw,a-s --owner=root --group=root --numeric-owner covariates.txt.gz genotypes.vcf.gz genotypes.vcf.gz.tbi interaction.txt phenotypes.bed.gz phenotypes.bed.gz.tbi make[1]: Leaving directory '/<>' dh_auto_test -a create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install -a dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_python3 -a I: dh_python3 tools:113: replacing shebang in debian/fastqtl/usr/bin/merge_chunks.py I: dh_python3 tools:113: replacing shebang in debian/fastqtl/usr/bin/run_FastQTL_threaded.py I: dh_python3 tools:113: replacing shebang in debian/fastqtl/usr/bin/sort_index_pairs.py I: dh_python3 tools:113: replacing shebang in debian/fastqtl/usr/bin/annotate_outputs.py I: dh_python3 tools:113: replacing shebang in debian/fastqtl/usr/bin/run_chunk.py dh_lintian -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a debian/rules execute_after_dh_fixperms-arch make[1]: Entering directory '/<>' chmod -x debian/*/usr/share/fastqtl/*.R make[1]: Leaving directory '/<>' dh_missing -a dh_dwz -a dh_strip -a 5b6676f60d95f7a7e4f97cd827f5bd6aa0402454 dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-armhf.so.3 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged dpkg-shlibdeps: warning: debian/fastqtl/usr/bin/fastQTL contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/fastqtl/usr/bin/fastQTL was not linked against libblas.so.3 (it uses none of the library's symbols) dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 154 INFO: pkgstriptranslations version 154 pkgstriptranslations: processing fastqtl (in debian/fastqtl); do_strip: , oemstrip: pkgstriptranslations: processing fastqtl-dbgsym (in debian/.debhelper/fastqtl/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/fastqtl/DEBIAN/control, package fastqtl, directory debian/fastqtl pkgstripfiles: processing control file: debian/.debhelper/fastqtl/dbgsym-root/DEBIAN/control, package fastqtl-dbgsym, directory debian/.debhelper/fastqtl/dbgsym-root dpkg-deb: building package 'fastqtl-dbgsym' in 'debian/.debhelper/scratch-space/build-fastqtl/fastqtl-dbgsym_2.184+v7+dfsg-4build3_armhf.deb'. pkgstripfiles: Running PNG optimization (using 4 cpus) for package fastqtl ... pkgstripfiles: No PNG files. dpkg-deb: building package 'fastqtl' in '../fastqtl_2.184+v7+dfsg-4build3_armhf.deb'. Renaming fastqtl-dbgsym_2.184+v7+dfsg-4build3_armhf.deb to fastqtl-dbgsym_2.184+v7+dfsg-4build3_armhf.ddeb dpkg-genbuildinfo --build=any -O../fastqtl_2.184+v7+dfsg-4build3_armhf.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../fastqtl_2.184+v7+dfsg-4build3_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2024-04-01T14:14:48Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ fastqtl_2.184+v7+dfsg-4build3_armhf.changes: -------------------------------------------- Format: 1.8 Date: Mon, 01 Apr 2024 16:47:13 +1100 Source: fastqtl Binary: fastqtl Built-For-Profiles: noudeb Architecture: armhf Version: 2.184+v7+dfsg-4build3 Distribution: noble-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: William Grant Description: fastqtl - Quantitative Trait Loci (QTL) mapper in cis for molecular phenoty Changes: fastqtl (2.184+v7+dfsg-4build3) noble; urgency=medium . * No-change rebuild for CVE-2024-3094 Checksums-Sha1: ee6a6e9b61e3fe873fbf59d29d4149bfa99c240f 5188106 fastqtl-dbgsym_2.184+v7+dfsg-4build3_armhf.ddeb aa5ef56c45fe3817f8b121a6591adc119329e204 8315 fastqtl_2.184+v7+dfsg-4build3_armhf.buildinfo 76f245a6c64a9effaf14787a48a698a65c8c223b 211828 fastqtl_2.184+v7+dfsg-4build3_armhf.deb Checksums-Sha256: 2a82facfb9ec4296fd84a115878c80b58d7e4b9d69c2864840c73b11782242bc 5188106 fastqtl-dbgsym_2.184+v7+dfsg-4build3_armhf.ddeb 1a47d9e523886a696894b59616f2f52a5d377cd51d70e51d1b96a7864d07d219 8315 fastqtl_2.184+v7+dfsg-4build3_armhf.buildinfo dafab20a8c4f819e86e638920a57c5086b89df969ca7a41300597b50785ad603 211828 fastqtl_2.184+v7+dfsg-4build3_armhf.deb Files: c0d4e045248605022c3e0bc5143f5856 5188106 debug optional fastqtl-dbgsym_2.184+v7+dfsg-4build3_armhf.ddeb 18d05c7d43a54e2f0af91c730910fc03 8315 science optional fastqtl_2.184+v7+dfsg-4build3_armhf.buildinfo 7d314fba5f6a6d5ea930db3b24332b26 211828 science optional fastqtl_2.184+v7+dfsg-4build3_armhf.deb Original-Maintainer: Debian Med Packaging Team /<>/fastqtl_2.184+v7+dfsg-4build3_armhf.changes.new could not be renamed to /<>/fastqtl_2.184+v7+dfsg-4build3_armhf.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: fastqtl Binary: fastqtl fastqtl-dbgsym Architecture: armhf Version: 2.184+v7+dfsg-4build3 Checksums-Md5: c0d4e045248605022c3e0bc5143f5856 5188106 fastqtl-dbgsym_2.184+v7+dfsg-4build3_armhf.ddeb 7d314fba5f6a6d5ea930db3b24332b26 211828 fastqtl_2.184+v7+dfsg-4build3_armhf.deb Checksums-Sha1: ee6a6e9b61e3fe873fbf59d29d4149bfa99c240f 5188106 fastqtl-dbgsym_2.184+v7+dfsg-4build3_armhf.ddeb 76f245a6c64a9effaf14787a48a698a65c8c223b 211828 fastqtl_2.184+v7+dfsg-4build3_armhf.deb Checksums-Sha256: 2a82facfb9ec4296fd84a115878c80b58d7e4b9d69c2864840c73b11782242bc 5188106 fastqtl-dbgsym_2.184+v7+dfsg-4build3_armhf.ddeb dafab20a8c4f819e86e638920a57c5086b89df969ca7a41300597b50785ad603 211828 fastqtl_2.184+v7+dfsg-4build3_armhf.deb Build-Origin: Ubuntu Build-Architecture: armhf Build-Date: Mon, 01 Apr 2024 14:14:47 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3ubuntu1), autopoint (= 0.21-14ubuntu1), autotools-dev (= 20220109.1), base-files (= 13ubuntu9), base-passwd (= 3.6.3), bash (= 5.2.21-2ubuntu4), binutils (= 2.42-4ubuntu2), binutils-arm-linux-gnueabihf (= 2.42-4ubuntu2), binutils-common (= 2.42-4ubuntu2), bsdextrautils (= 2.39.3-9ubuntu4), bsdutils (= 1:2.39.3-9ubuntu4), build-essential (= 12.10ubuntu1), bzip2 (= 1.0.8-5.1), coreutils (= 9.4-3ubuntu5), cpp (= 4:13.2.0-7ubuntu1), cpp-13 (= 13.2.0-23ubuntu3), cpp-13-arm-linux-gnueabihf (= 13.2.0-23ubuntu3), cpp-arm-linux-gnueabihf (= 4:13.2.0-7ubuntu1), dash (= 0.5.12-6ubuntu5), debconf (= 1.5.86), debhelper (= 13.14.1ubuntu5), debianutils (= 5.17build1), debugedit (= 1:5.0-5build1), dh-autoreconf (= 20), dh-python (= 6.20231223ubuntu2), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.10-1), dpkg (= 1.22.6ubuntu6), dpkg-dev (= 1.22.6ubuntu6), dwz (= 0.15-1build6), file (= 1:5.45-3build1), findutils (= 4.9.0-5), g++ (= 4:13.2.0-7ubuntu1), g++-13 (= 13.2.0-23ubuntu3), g++-13-arm-linux-gnueabihf (= 13.2.0-23ubuntu3), g++-arm-linux-gnueabihf (= 4:13.2.0-7ubuntu1), gcc (= 4:13.2.0-7ubuntu1), gcc-13 (= 13.2.0-23ubuntu3), gcc-13-arm-linux-gnueabihf (= 13.2.0-23ubuntu3), gcc-13-base (= 13.2.0-23ubuntu3), gcc-14-base (= 14-20240330-1ubuntu2), gcc-arm-linux-gnueabihf (= 4:13.2.0-7ubuntu1), gettext (= 0.21-14ubuntu1), gettext-base (= 0.21-14ubuntu1), grep (= 3.11-4), groff-base (= 1.23.0-3build2), gzip (= 1.12-1ubuntu2), hostname (= 3.23+nmu2ubuntu1), icu-devtools (= 74.2-1ubuntu1), init-system-helpers (= 1.66ubuntu1), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-1), libarchive-zip-perl (= 1.68-1), libasan8 (= 14-20240330-1ubuntu2), libatomic1 (= 14-20240330-1ubuntu2), libattr1 (= 1:2.5.2-1), libaudit-common (= 1:3.1.2-2.1build1), libaudit1 (= 1:3.1.2-2.1build1), libbinutils (= 2.42-4ubuntu2), libblas-dev (= 3.12.0-3), libblas3 (= 3.12.0-3), libblkid1 (= 2.39.3-9ubuntu4), libboost-dev (= 1.83.0.1ubuntu2), libboost-iostreams-dev (= 1.83.0.1ubuntu2), libboost-iostreams1.83-dev (= 1.83.0-2.1ubuntu2), libboost-iostreams1.83.0 (= 1.83.0-2.1ubuntu2), libboost-program-options-dev (= 1.83.0.1ubuntu2), libboost-program-options1.83-dev (= 1.83.0-2.1ubuntu2), libboost-program-options1.83.0 (= 1.83.0-2.1ubuntu2), libboost-regex1.83-dev (= 1.83.0-2.1ubuntu2), libboost-regex1.83.0 (= 1.83.0-2.1ubuntu2), libboost1.83-dev (= 1.83.0-2.1ubuntu2), libbrotli1 (= 1.1.0-2build2), libbz2-1.0 (= 1.0.8-5.1), libbz2-dev (= 1.0.8-5.1), libc-bin (= 2.39-0ubuntu8), libc-dev-bin (= 2.39-0ubuntu8), libc6 (= 2.39-0ubuntu8), libc6-dev (= 2.39-0ubuntu8), libcap-ng0 (= 0.8.4-2build2), libcap2 (= 1:2.66-5ubuntu1), libcc1-0 (= 14-20240330-1ubuntu2), libcom-err2 (= 1.47.0-2.4~exp1ubuntu3), libcrypt-dev (= 1:4.4.36-4), libcrypt1 (= 1:4.4.36-4), libctf-nobfd0 (= 2.42-4ubuntu2), libctf0 (= 2.42-4ubuntu2), libcurl3t64-gnutls (= 8.5.0-2ubuntu9), libcurl4-gnutls-dev (= 8.5.0-2ubuntu9), libdb5.3t64 (= 5.3.28+dfsg2-6build1), libdebconfclient0 (= 0.271ubuntu3), libdebhelper-perl (= 13.14.1ubuntu5), libdeflate-dev (= 1.19-1), libdeflate0 (= 1.19-1), libdpkg-perl (= 1.22.6ubuntu6), libdw1t64 (= 0.190-1.1build3), libeigen3-dev (= 3.4.0-4), libelf1t64 (= 0.190-1.1build3), libexpat1 (= 2.6.1-2build1), libffi8 (= 3.4.6-1), libfile-stripnondeterminism-perl (= 1.13.1-1), libgcc-13-dev (= 13.2.0-23ubuntu3), libgcc-s1 (= 14-20240330-1ubuntu2), libgcrypt20 (= 1.10.3-2), libgdbm-compat4t64 (= 1.23-5.1build1), libgdbm6t64 (= 1.23-5.1build1), libgmp10 (= 2:6.3.0+dfsg-2ubuntu4), libgnutls30t64 (= 3.8.3-1.1ubuntu3), libgomp1 (= 14-20240330-1ubuntu2), libgpg-error0 (= 1.47-3build1), libgsl-dev (= 2.7.1+dfsg-6ubuntu1), libgsl27 (= 2.7.1+dfsg-6ubuntu1), libgslcblas0 (= 2.7.1+dfsg-6ubuntu1), libgssapi-krb5-2 (= 1.20.1-6ubuntu2), libhogweed6t64 (= 3.9.1-2.2build1), libhts-dev (= 1.19+ds-1.1build3), libhts3t64 (= 1.19+ds-1.1build3), libhtscodecs2 (= 1.6.0-1), libicu-dev (= 74.2-1ubuntu1), libicu74 (= 74.2-1ubuntu1), libidn2-0 (= 2.3.7-2), libisl23 (= 0.26-3), libjansson4 (= 2.14-2build2), libk5crypto3 (= 1.20.1-6ubuntu2), libkeyutils1 (= 1.6.3-3), libkrb5-3 (= 1.20.1-6ubuntu2), libkrb5support0 (= 1.20.1-6ubuntu2), libldap2 (= 2.6.7+dfsg-1~exp1ubuntu6), liblz4-1 (= 1.9.4-1), liblzma-dev (= 5.6.1+really5.4.5-1build1), liblzma5 (= 5.6.1+really5.4.5-1build1), libmagic-mgc (= 1:5.45-3build1), libmagic1t64 (= 1:5.45-3build1), libmd0 (= 1.1.0-2), libmount1 (= 2.39.3-9ubuntu4), libmpc3 (= 1.3.1-1), libmpfr6 (= 4.2.1-1), libncursesw6 (= 6.4+20240113-1ubuntu1), libnettle8t64 (= 3.9.1-2.2build1), libnghttp2-14 (= 1.59.0-1build2), libp11-kit0 (= 0.25.3-4ubuntu1), libpam-modules (= 1.5.3-5ubuntu4), libpam-modules-bin (= 1.5.3-5ubuntu4), libpam-runtime (= 1.5.3-5ubuntu4), libpam0g (= 1.5.3-5ubuntu4), libpcre2-8-0 (= 10.42-4ubuntu1), libperl5.38t64 (= 5.38.2-3.2build1), libpipeline1 (= 1.5.7-2), libpkgconf3 (= 1.8.1-2), libpsl5t64 (= 0.21.2-1.1build1), libpython3-stdlib (= 3.12.2-0ubuntu2), libpython3.12-minimal (= 3.12.2-4build4), libpython3.12-stdlib (= 3.12.2-4build4), libreadline8t64 (= 8.2-4build1), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build7), libsasl2-2 (= 2.1.28+dfsg1-5ubuntu2), libsasl2-modules-db (= 2.1.28+dfsg1-5ubuntu2), libseccomp2 (= 2.5.5-1ubuntu3), libselinux1 (= 3.5-2ubuntu2), libsframe1 (= 2.42-4ubuntu2), libsmartcols1 (= 2.39.3-9ubuntu4), libsqlite3-0 (= 3.45.1-1ubuntu2), libssh-4 (= 0.10.6-2build2), libssl3t64 (= 3.0.13-0ubuntu3), libstdc++-13-dev (= 13.2.0-23ubuntu3), libstdc++6 (= 14-20240330-1ubuntu2), libsub-override-perl (= 0.10-1), libsystemd0 (= 255.4-1ubuntu6), libtasn1-6 (= 4.19.0-3), libtinfo6 (= 6.4+20240113-1ubuntu1), libtool (= 2.4.7-7), libubsan1 (= 14-20240330-1ubuntu2), libuchardet0 (= 0.0.8-1), libudev1 (= 255.4-1ubuntu6), libunistring5 (= 1.1-2), libuuid1 (= 2.39.3-9ubuntu4), libxml2 (= 2.9.14+dfsg-1.3ubuntu3), libzstd1 (= 1.5.5+dfsg2-2), linux-libc-dev (= 6.8.0-20.20), login (= 1:4.13+dfsg1-4ubuntu1), lto-disabled-list (= 47), m4 (= 1.4.19-4), make (= 4.3-4.1build1), man-db (= 2.12.0-4build1), mawk (= 1.3.4.20240123-1), media-types (= 10.1.0), ncurses-base (= 6.4+20240113-1ubuntu1), ncurses-bin (= 6.4+20240113-1ubuntu1), netbase (= 6.4), patch (= 2.7.6-7build2), perl (= 5.38.2-3.2build1), perl-base (= 5.38.2-3.2build1), perl-modules-5.38 (= 5.38.2-3.2build1), pkg-config (= 1.8.1-2), pkgconf (= 1.8.1-2), pkgconf-bin (= 1.8.1-2), po-debconf (= 1.0.21+nmu1), python3 (= 3.12.2-0ubuntu2), python3-minimal (= 3.12.2-0ubuntu2), python3-pkg-resources (= 68.1.2-2ubuntu1), python3-setuptools (= 68.1.2-2ubuntu1), python3.12 (= 3.12.2-4build4), python3.12-minimal (= 3.12.2-4build4), r-mathlib (= 4.3.3-2build1), readline-common (= 8.2-4build1), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.9-2), sensible-utils (= 0.0.22), sysvinit-utils (= 3.08-6ubuntu2), tar (= 1.35+dfsg-3), tzdata (= 2024a-1ubuntu1), util-linux (= 2.39.3-9ubuntu4), xz-utils (= 5.6.1+really5.4.5-1build1), zlib1g (= 1:1.3.dfsg-3.1ubuntu2), zlib1g-dev (= 1:1.3.dfsg-3.1ubuntu2) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1711950433" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ fastqtl_2.184+v7+dfsg-4build3_armhf.deb --------------------------------------- new Debian package, version 2.0. size 211828 bytes: control archive=1602 bytes. 1270 bytes, 21 lines control 714 bytes, 11 lines md5sums 261 bytes, 12 lines * postinst #!/bin/sh 374 bytes, 12 lines * prerm #!/bin/sh Package: fastqtl Version: 2.184+v7+dfsg-4build3 Architecture: armhf Maintainer: Ubuntu Developers Installed-Size: 484 Depends: libblas3 | libblas.so.3, libboost-iostreams1.83.0 (>= 1.83.0), libboost-program-options1.83.0 (>= 1.83.0), libc6 (>= 2.38), libgcc-s1 (>= 3.5), libgsl27 (>= 2.7.1), libhts3t64 (>= 1.17), libstdc++6 (>= 13.1), r-mathlib (>= 4.3.3), python3:any, python3 Recommends: r-cran-qvalue, r-cran-tools, r-cran-argparser Suggests: fastqtl-doc Section: science Priority: optional Homepage: http://fastqtl.sourceforge.net/ Description: Quantitative Trait Loci (QTL) mapper in cis for molecular phenotypes The goal of FastQTL is to identify single-nucleotide polymorphisms (SNPs) which are significantly associated with various molecular phenotypes (i.e. expression of known genes, cytosine methylation levels, etc). It performs scans for all possible phenotype-variant pairs in cis (i.e. variants located within a specific window around a phenotype). FastQTL implements a new permutation scheme (Beta approximation) to accurately and rapidly correct for multiple-testing at both the genotype and phenotype levels. Original-Maintainer: Debian Med Packaging Team drwxr-xr-x root/root 0 2024-04-01 05:47 ./ drwxr-xr-x root/root 0 2024-04-01 05:47 ./usr/ drwxr-xr-x root/root 0 2024-04-01 05:47 ./usr/bin/ -rwxr-xr-x root/root 6497 2024-04-01 05:47 ./usr/bin/annotate_outputs.py -rwxr-xr-x root/root 411152 2024-04-01 05:47 ./usr/bin/fastQTL -rwxr-xr-x root/root 2968 2024-04-01 05:47 ./usr/bin/merge_chunks.py -rwxr-xr-x root/root 5981 2024-04-01 05:47 ./usr/bin/run_FastQTL_threaded.py -rwxr-xr-x root/root 3093 2024-04-01 05:47 ./usr/bin/run_chunk.py -rwxr-xr-x root/root 1210 2024-04-01 05:47 ./usr/bin/sort_index_pairs.py drwxr-xr-x root/root 0 2024-04-01 05:47 ./usr/share/ drwxr-xr-x root/root 0 2024-04-01 05:47 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-04-01 05:47 ./usr/share/doc/fastqtl/ -rw-r--r-- root/root 1236 2024-04-01 05:47 ./usr/share/doc/fastqtl/changelog.Debian.gz -rw-r--r-- root/root 38490 2023-12-15 18:31 ./usr/share/doc/fastqtl/copyright drwxr-xr-x root/root 0 2024-04-01 05:47 ./usr/share/fastqtl/ -rw-r--r-- root/root 2607 2017-11-29 03:09 ./usr/share/fastqtl/calculateSignificanceFastQTL.R drwxr-xr-x root/root 0 2024-04-01 05:47 ./usr/share/lintian/ drwxr-xr-x root/root 0 2024-04-01 05:47 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 294 2023-12-15 18:31 ./usr/share/lintian/overrides/fastqtl drwxr-xr-x root/root 0 2024-04-01 05:47 ./usr/share/man/ drwxr-xr-x root/root 0 2024-04-01 05:47 ./usr/share/man/man1/ -rw-r--r-- root/root 1573 2024-04-01 05:47 ./usr/share/man/man1/fastQTL.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build Type: any Build-Space: 104240 Build-Time: 215 Distribution: noble-proposed Host Architecture: armhf Install-Time: 78 Job: fastqtl_2.184+v7+dfsg-4build3.dsc Machine Architecture: arm64 Package: fastqtl Package-Time: 297 Source-Version: 2.184+v7+dfsg-4build3 Space: 104240 Status: successful Version: 2.184+v7+dfsg-4build3 -------------------------------------------------------------------------------- Finished at 2024-04-01T14:14:48Z Build needed 00:04:57, 104240k disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=noble --arch=armhf PACKAGEBUILD-28001942 Scanning for processes to kill in build PACKAGEBUILD-28001942