RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux twombly 3.8.0-mustang_sw_1.07.04-Alpha #1 SMP Sat Sep 14 09:50:58 MDT 2013 aarch64 Buildd toolchain package versions: launchpad-buildd_119~APM.12.04.2 python-lpbuildd_119~APM.12.04.2. Syncing the system clock with the buildd NTP service... 12 Oct 21:30:35 ntpdate[15044]: adjust time server 10.211.37.1 offset -0.002260 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-4961541', '/home/buildd/filecache-default/44f33cdeb3bba2d264fe6adff2cf174984095440'] Unpacking chroot for build PACKAGEBUILD-4961541 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-4961541'] Mounting chroot for build PACKAGEBUILD-4961541 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-4961541', 'deb http://ftpmaster.internal/ubuntu saucy main universe'] Overriding sources.list in build-PACKAGEBUILD-4961541 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-4961541', 'arm64'] Updating debian chroot for build PACKAGEBUILD-4961541 Ign http://ftpmaster.internal saucy InRelease Ign http://archive-team.internal saucy InRelease Get:1 http://ftpmaster.internal saucy Release.gpg [933 B] Ign http://archive-team.internal saucy Release.gpg Get:2 http://ftpmaster.internal saucy Release [49.6 kB] Hit http://archive-team.internal saucy Release Ign http://archive-team.internal saucy/main arm64 Packages/DiffIndex Get:3 http://ftpmaster.internal saucy/main arm64 Packages [1035 kB] Ign http://archive-team.internal saucy/main Translation-en Hit http://archive-team.internal saucy/main arm64 Packages Get:4 http://ftpmaster.internal saucy/universe arm64 Packages [2779 kB] Hit http://ftpmaster.internal saucy/main Translation-en Get:5 http://ftpmaster.internal saucy/universe Translation-en [3885 kB] Fetched 7749 kB in 33s (228 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-4961541', 'arm64', 'saucy', '--nolog', '--batch', '--archive=ubuntu', '--dist=saucy', '--purpose=PRIMARY', '--architecture=arm64', '--comp=universe', 'fastdnaml_1.2.2-10.dsc'] Initiating build PACKAGEBUILD-4961541 with 8 jobs across 8 processor cores. Kernel reported to sbuild: 3.8.0-mustang_sw_1.07.04-Alpha #1 SMP Sat Sep 14 09:50:58 MDT 2013 aarch64 Automatic build of fastdnaml_1.2.2-10 on twombly by sbuild/arm64 1.170.5 Build started at 20131012-2131 ****************************************************************************** fastdnaml_1.2.2-10.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 8) Checking for already installed source dependencies... debhelper: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: apparmor-easyprof bsdmainutils dh-apparmor dh-python file gettext gettext-base groff-base intltool-debian libasprintf-dev libasprintf0c2 libcroco3 libexpat1 libffi6 libgettextpo-dev libgettextpo0 libglib2.0-0 libmagic1 libpipeline1 libpython3-stdlib libpython3.3-minimal libpython3.3-stdlib libssl1.0.0 libunistring0 libxml2 man-db mime-support po-debconf python3 python3-minimal python3.3 python3.3-minimal Suggested packages: wamerican wordlist whois vacation dh-make gettext-doc groff less www-browser libmail-box-perl python3-doc python3-tk python3.3-doc binfmt-support Recommended packages: curl wget lynx-cur libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl The following NEW packages will be installed: apparmor-easyprof bsdmainutils debhelper dh-apparmor dh-python file gettext gettext-base groff-base intltool-debian libasprintf-dev libasprintf0c2 libcroco3 libexpat1 libffi6 libgettextpo-dev libgettextpo0 libglib2.0-0 libmagic1 libpipeline1 libpython3-stdlib libpython3.3-minimal libpython3.3-stdlib libssl1.0.0 libunistring0 libxml2 man-db mime-support po-debconf python3 python3-minimal python3.3 python3.3-minimal 0 upgraded, 33 newly installed, 0 to remove and 0 not upgraded. Need to get 11.7 MB of archives. After this operation, 41.8 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libexpat1 libffi6 libmagic1 libssl1.0.0 libpython3.3-minimal mime-support libpython3.3-stdlib python3.3-minimal libasprintf0c2 libglib2.0-0 libpipeline1 libxml2 groff-base bsdmainutils man-db libcroco3 libunistring0 libgettextpo0 python3.3 python3-minimal libpython3-stdlib python3 dh-python file gettext-base libasprintf-dev libgettextpo-dev gettext intltool-debian po-debconf apparmor-easyprof dh-apparmor debhelper Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ saucy/main libexpat1 arm64 2.1.0-4 [114 kB] Get:2 http://ftpmaster.internal/ubuntu/ saucy/main libffi6 arm64 3.0.13-4 [19.0 kB] Get:3 http://ftpmaster.internal/ubuntu/ saucy/main libmagic1 arm64 5.11-2ubuntu4 [163 kB] Get:4 http://ftpmaster.internal/ubuntu/ saucy/main libssl1.0.0 arm64 1.0.1e-3ubuntu1 [860 kB] Get:5 http://ftpmaster.internal/ubuntu/ saucy/main libpython3.3-minimal arm64 3.3.2-7ubuntu3 [609 kB] Get:6 http://ftpmaster.internal/ubuntu/ saucy/main mime-support all 3.54ubuntu1 [31.7 kB] Get:7 http://ftpmaster.internal/ubuntu/ saucy/main libpython3.3-stdlib arm64 3.3.2-7ubuntu3 [2568 kB] Get:8 http://ftpmaster.internal/ubuntu/ saucy/main python3.3-minimal arm64 3.3.2-7ubuntu3 [1431 kB] Get:9 http://ftpmaster.internal/ubuntu/ saucy/main libasprintf0c2 arm64 0.18.1.1-10ubuntu3 [6816 B] Get:10 http://ftpmaster.internal/ubuntu/ saucy/main libglib2.0-0 arm64 2.38.0-1ubuntu1 [824 kB] Get:11 http://ftpmaster.internal/ubuntu/ saucy/main libpipeline1 arm64 1.2.4-1 [24.5 kB] Get:12 http://ftpmaster.internal/ubuntu/ saucy/main libxml2 arm64 2.9.1+dfsg1-3ubuntu2 [588 kB] Get:13 http://ftpmaster.internal/ubuntu/ saucy/main groff-base arm64 1.22.2-3 [688 kB] Get:14 http://ftpmaster.internal/ubuntu/ saucy/main bsdmainutils arm64 9.0.5ubuntu1 [199 kB] Get:15 http://ftpmaster.internal/ubuntu/ saucy/main man-db arm64 2.6.5-2 [678 kB] Get:16 http://ftpmaster.internal/ubuntu/ saucy/main libcroco3 arm64 0.6.8-2 [64.9 kB] Get:17 http://ftpmaster.internal/ubuntu/ saucy/main libunistring0 arm64 0.9.3-5ubuntu1 [403 kB] Get:18 http://ftpmaster.internal/ubuntu/ saucy/main libgettextpo0 arm64 0.18.1.1-10ubuntu3 [106 kB] Get:19 http://ftpmaster.internal/ubuntu/ saucy/main python3.3 arm64 3.3.2-7ubuntu3 [129 kB] Get:20 http://ftpmaster.internal/ubuntu/ saucy/main python3-minimal arm64 3.3.2-14ubuntu1 [26.4 kB] Get:21 http://ftpmaster.internal/ubuntu/ saucy/main libpython3-stdlib arm64 3.3.2-14ubuntu1 [8144 B] Get:22 http://ftpmaster.internal/ubuntu/ saucy/main python3 arm64 3.3.2-14ubuntu1 [9144 B] Get:23 http://ftpmaster.internal/ubuntu/ saucy/main dh-python all 1.20131003-1 [61.7 kB] Get:24 http://ftpmaster.internal/ubuntu/ saucy/main file arm64 5.11-2ubuntu4 [18.2 kB] Get:25 http://ftpmaster.internal/ubuntu/ saucy/main gettext-base arm64 0.18.1.1-10ubuntu3 [54.7 kB] Get:26 http://ftpmaster.internal/ubuntu/ saucy/main libasprintf-dev arm64 0.18.1.1-10ubuntu3 [4586 B] Get:27 http://ftpmaster.internal/ubuntu/ saucy/main libgettextpo-dev arm64 0.18.1.1-10ubuntu3 [147 kB] Get:28 http://ftpmaster.internal/ubuntu/ saucy/main gettext arm64 0.18.1.1-10ubuntu3 [994 kB] Get:29 http://ftpmaster.internal/ubuntu/ saucy/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:30 http://ftpmaster.internal/ubuntu/ saucy/main po-debconf all 1.0.16+nmu2ubuntu1 [210 kB] Get:31 http://ftpmaster.internal/ubuntu/ saucy/main apparmor-easyprof all 2.8.0-0ubuntu31 [23.8 kB] Get:32 http://ftpmaster.internal/ubuntu/ saucy/main dh-apparmor all 2.8.0-0ubuntu31 [7720 B] Get:33 http://ftpmaster.internal/ubuntu/ saucy/main debhelper all 9.20130630ubuntu1 [629 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 11.7 MB in 32s (365 kB/s) Selecting previously unselected package libexpat1:arm64. (Reading database ... 11933 files and directories currently installed.) Unpacking libexpat1:arm64 (from .../libexpat1_2.1.0-4_arm64.deb) ... Selecting previously unselected package libffi6:arm64. Unpacking libffi6:arm64 (from .../libffi6_3.0.13-4_arm64.deb) ... Selecting previously unselected package libmagic1:arm64. Unpacking libmagic1:arm64 (from .../libmagic1_5.11-2ubuntu4_arm64.deb) ... Selecting previously unselected package libssl1.0.0:arm64. Unpacking libssl1.0.0:arm64 (from .../libssl1.0.0_1.0.1e-3ubuntu1_arm64.deb) ... Selecting previously unselected package libpython3.3-minimal:arm64. Unpacking libpython3.3-minimal:arm64 (from .../libpython3.3-minimal_3.3.2-7ubuntu3_arm64.deb) ... Selecting previously unselected package mime-support. Unpacking mime-support (from .../mime-support_3.54ubuntu1_all.deb) ... Selecting previously unselected package libpython3.3-stdlib:arm64. Unpacking libpython3.3-stdlib:arm64 (from .../libpython3.3-stdlib_3.3.2-7ubuntu3_arm64.deb) ... Selecting previously unselected package python3.3-minimal. Unpacking python3.3-minimal (from .../python3.3-minimal_3.3.2-7ubuntu3_arm64.deb) ... Selecting previously unselected package libasprintf0c2:arm64. Unpacking libasprintf0c2:arm64 (from .../libasprintf0c2_0.18.1.1-10ubuntu3_arm64.deb) ... Selecting previously unselected package libglib2.0-0:arm64. Unpacking libglib2.0-0:arm64 (from .../libglib2.0-0_2.38.0-1ubuntu1_arm64.deb) ... Selecting previously unselected package libpipeline1:arm64. Unpacking libpipeline1:arm64 (from .../libpipeline1_1.2.4-1_arm64.deb) ... Selecting previously unselected package libxml2:arm64. Unpacking libxml2:arm64 (from .../libxml2_2.9.1+dfsg1-3ubuntu2_arm64.deb) ... Selecting previously unselected package groff-base. Unpacking groff-base (from .../groff-base_1.22.2-3_arm64.deb) ... Selecting previously unselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_9.0.5ubuntu1_arm64.deb) ... Selecting previously unselected package man-db. Unpacking man-db (from .../man-db_2.6.5-2_arm64.deb) ... Selecting previously unselected package libcroco3:arm64. Unpacking libcroco3:arm64 (from .../libcroco3_0.6.8-2_arm64.deb) ... Selecting previously unselected package libunistring0:arm64. Unpacking libunistring0:arm64 (from .../libunistring0_0.9.3-5ubuntu1_arm64.deb) ... Selecting previously unselected package libgettextpo0:arm64. Unpacking libgettextpo0:arm64 (from .../libgettextpo0_0.18.1.1-10ubuntu3_arm64.deb) ... Selecting previously unselected package python3.3. Unpacking python3.3 (from .../python3.3_3.3.2-7ubuntu3_arm64.deb) ... Selecting previously unselected package python3-minimal. Unpacking python3-minimal (from .../python3-minimal_3.3.2-14ubuntu1_arm64.deb) ... Selecting previously unselected package libpython3-stdlib:arm64. Unpacking libpython3-stdlib:arm64 (from .../libpython3-stdlib_3.3.2-14ubuntu1_arm64.deb) ... Selecting previously unselected package python3. Unpacking python3 (from .../python3_3.3.2-14ubuntu1_arm64.deb) ... Selecting previously unselected package dh-python. Unpacking dh-python (from .../dh-python_1.20131003-1_all.deb) ... Selecting previously unselected package file. Unpacking file (from .../file_5.11-2ubuntu4_arm64.deb) ... Selecting previously unselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.18.1.1-10ubuntu3_arm64.deb) ... Selecting previously unselected package libasprintf-dev:arm64. Unpacking libasprintf-dev:arm64 (from .../libasprintf-dev_0.18.1.1-10ubuntu3_arm64.deb) ... Selecting previously unselected package libgettextpo-dev:arm64. Unpacking libgettextpo-dev:arm64 (from .../libgettextpo-dev_0.18.1.1-10ubuntu3_arm64.deb) ... Selecting previously unselected package gettext. Unpacking gettext (from .../gettext_0.18.1.1-10ubuntu3_arm64.deb) ... Selecting previously unselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously unselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2ubuntu1_all.deb) ... Selecting previously unselected package apparmor-easyprof. Unpacking apparmor-easyprof (from .../apparmor-easyprof_2.8.0-0ubuntu31_all.deb) ... Selecting previously unselected package dh-apparmor. Unpacking dh-apparmor (from .../dh-apparmor_2.8.0-0ubuntu31_all.deb) ... Selecting previously unselected package debhelper. Unpacking debhelper (from .../debhelper_9.20130630ubuntu1_all.deb) ... Setting up libexpat1:arm64 (2.1.0-4) ... Setting up libffi6:arm64 (3.0.13-4) ... Setting up libmagic1:arm64 (5.11-2ubuntu4) ... Setting up libssl1.0.0:arm64 (1.0.1e-3ubuntu1) ... Setting up libpython3.3-minimal:arm64 (3.3.2-7ubuntu3) ... Setting up mime-support (3.54ubuntu1) ... update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode Setting up libpython3.3-stdlib:arm64 (3.3.2-7ubuntu3) ... Setting up python3.3-minimal (3.3.2-7ubuntu3) ... Setting up libasprintf0c2:arm64 (0.18.1.1-10ubuntu3) ... Setting up libglib2.0-0:arm64 (2.38.0-1ubuntu1) ... No schema files found: doing nothing. Setting up libpipeline1:arm64 (1.2.4-1) ... Setting up libxml2:arm64 (2.9.1+dfsg1-3ubuntu2) ... Setting up groff-base (1.22.2-3) ... Setting up bsdmainutils (9.0.5ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up man-db (2.6.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libcroco3:arm64 (0.6.8-2) ... Setting up libunistring0:arm64 (0.9.3-5ubuntu1) ... Setting up libgettextpo0:arm64 (0.18.1.1-10ubuntu3) ... Setting up python3.3 (3.3.2-7ubuntu3) ... Setting up python3-minimal (3.3.2-14ubuntu1) ... Setting up libpython3-stdlib:arm64 (3.3.2-14ubuntu1) ... Setting up file (5.11-2ubuntu4) ... Setting up gettext-base (0.18.1.1-10ubuntu3) ... Setting up libasprintf-dev:arm64 (0.18.1.1-10ubuntu3) ... Setting up libgettextpo-dev:arm64 (0.18.1.1-10ubuntu3) ... Setting up gettext (0.18.1.1-10ubuntu3) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2ubuntu1) ... Setting up dh-python (1.20131003-1) ... Setting up python3 (3.3.2-14ubuntu1) ... running python rtupdate hooks for python3.3... running python post-rtupdate hooks for python3.3... Setting up apparmor-easyprof (2.8.0-0ubuntu31) ... Setting up dh-apparmor (2.8.0-0ubuntu31) ... Setting up debhelper (9.20130630ubuntu1) ... Processing triggers for libc-bin ... Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.17-93ubuntu4 make_3.81-8.2ubuntu3 dpkg-dev_1.16.12ubuntu1 gcc-4.8_4.8.1-10ubuntu8 g++-4.8_4.8.1-10ubuntu8 binutils_2.23.52.20130913-0ubuntu1 libstdc++-4.8-dev_4.8.1-10ubuntu8 libstdc++6_4.8.1-10ubuntu8 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt gpgv: Signature made Tue Dec 6 11:40:00 2011 UTC using DSA key ID C09FD35A gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./fastdnaml_1.2.2-10.dsc dpkg-source: info: extracting fastdnaml in fastdnaml-1.2.2 dpkg-source: info: unpacking fastdnaml_1.2.2.orig.tar.gz dpkg-source: info: unpacking fastdnaml_1.2.2-10.debian.tar.gz dpkg-source: info: applying Makefile.patch dpkg-source: info: applying scripts.patch dpkg-buildpackage: source package fastdnaml dpkg-buildpackage: source version 1.2.2-10 dpkg-source --before-build fastdnaml-1.2.2 dpkg-buildpackage: host architecture arm64 /usr/bin/fakeroot debian/rules clean dh clean dh_testdir dh_auto_clean make[1]: Entering directory `/build/buildd/fastdnaml-1.2.2' (cd source; rm -f *.o fastDNAml) rm -rf tests rm -f checkpoint.* make[1]: Leaving directory `/build/buildd/fastdnaml-1.2.2' debian/rules override_dh_clean make[1]: Entering directory `/build/buildd/fastdnaml-1.2.2' rm -fr source/fastDNAml make[1]: Leaving directory `/build/buildd/fastdnaml-1.2.2' debian/rules build-arch dh build-arch dh_testdir -a dh_auto_configure -a dh_auto_build -a make[1]: Entering directory `/build/buildd/fastdnaml-1.2.2' (cd source; cc fastDNAml.c -o fastDNAml -lm) In file included from fastDNAml.c:207:0: fastDNAml.h:222:10: warning: conflicting types for built-in function 'malloc' [enabled by default] char *malloc(); ^ fastDNAml.c: In function 'freeTopol': fastDNAml.h:228:28: warning: incompatible implicit declaration of built-in function 'free' [enabled by default] #define Free(x) (void) free((char *) (x)) /* BSD */ ^ fastDNAml.c:342:5: note: in expansion of macro 'Free' Free(tpl->links); ^ fastDNAml.c: In function 'freeTreeNode': fastDNAml.h:228:28: warning: incompatible implicit declaration of built-in function 'free' [enabled by default] #define Free(x) (void) free((char *) (x)) /* BSD */ ^ fastDNAml.c:1533:23: note: in expansion of macro 'Free' if (p->x->lv) Free(p->x->lv); ^ fastDNAml.c: In function 'freeTree': fastDNAml.h:228:28: warning: incompatible implicit declaration of built-in function 'free' [enabled by default] #define Free(x) (void) free((char *) (x)) /* BSD */ ^ fastDNAml.c:1560:5: note: in expansion of macro 'Free' Free(tr->nodep[1]); /* Free the actual nodes */ ^ fastDNAml.c: In function 'setupxarray': fastDNAml.h:228:28: warning: incompatible implicit declaration of built-in function 'free' [enabled by default] #define Free(x) (void) free((char *) (x)) /* BSD */ ^ fastDNAml.c:2028:9: note: in expansion of macro 'Free' Free(x); ^ fastDNAml.c: In function 'makenewz': fastDNAml.h:228:28: warning: incompatible implicit declaration of built-in function 'free' [enabled by default] #define Free(x) (void) free((char *) (x)) /* BSD */ ^ fastDNAml.c:2604:5: note: in expansion of macro 'Free' Free(abi); ^ fastDNAml.c: In function 'readKeyValue': fastDNAml.c:2886:15: warning: incompatible implicit declaration of built-in function 'strlen' [enabled by default] string += strlen(key); ^ In file included from fastDNAml.c:207:0: fastDNAml.c: In function 'treeOut': fastDNAml.h:228:28: warning: incompatible implicit declaration of built-in function 'free' [enabled by default] #define Free(x) (void) free((char *) (x)) /* BSD */ ^ fastDNAml.c:3683:5: note: in expansion of macro 'Free' Free(treestr); ^ fastDNAml.c: In function 'cmpBestTrees': fastDNAml.h:228:28: warning: incompatible implicit declaration of built-in function 'free' [enabled by default] #define Free(x) (void) free((char *) (x)) /* BSD */ ^ fastDNAml.c:4535:5: note: in expansion of macro 'Free' Free(log_f0); ^ fastDNAml.c: In function 'makeDenovoTree': fastDNAml.h:228:28: warning: incompatible implicit declaration of built-in function 'free' [enabled by default] #define Free(x) (void) free((char *) (x)) /* BSD */ ^ fastDNAml.c:4765:5: note: in expansion of macro 'Free' Free(enterorder); ^ make[1]: Leaving directory `/build/buildd/fastdnaml-1.2.2' dh_auto_test -a /usr/bin/fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_installdirs -a debian/rules override_dh_auto_install make[1]: Entering directory `/build/buildd/fastdnaml-1.2.2' # do nothing make[1]: Leaving directory `/build/buildd/fastdnaml-1.2.2' debian/rules override_dh_install make[1]: Entering directory `/build/buildd/fastdnaml-1.2.2' dh_install cp -a docs/fastDNAml_doc_1.2.txt `pwd`/debian/`dh_listpackages`/usr/share/`dh_listpackages`/fastdnaml_help # the scripts have to be executable thus mentioning these in debian/install is not enough cp -a scripts/* `pwd`/debian/`dh_listpackages`/usr/lib/`dh_listpackages`/bin chmod 755 `pwd`/debian/`dh_listpackages`/usr/lib/`dh_listpackages`/bin/* make[1]: Leaving directory `/build/buildd/fastdnaml-1.2.2' dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_installmenu -a dh_perl -a dh_link -a dh_compress -a dh_fixperms -a dh_strip -a dh_strip debug symbol extraction: all non-arch-all packages for this build platform arm64: fastdnaml dh_strip debug symbol extraction: packages to act on: fastdnaml dh_strip debug symbol extraction: ignored packages: fastdnaml is already stripped, ignoring find: `/build/buildd/fastdnaml-1.2.2/debian/fastdnaml-dbgsym': No such file or directory dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 118 pkgstriptranslations: processing fastdnaml (in debian/fastdnaml); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/fastdnaml/DEBIAN/control, package fastdnaml, directory debian/fastdnaml pkgstripfiles: Truncating usr/share/doc/fastdnaml/changelog.Debian.gz to topmost ten records pkgstripfiles: PNG optimization for package fastdnaml took 0 s dpkg-deb: warning: 'debian/fastdnaml/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `fastdnaml' in `../fastdnaml_1.2.2-10_arm64.deb'. dpkg-genchanges -B -mUbuntu Build Daemon >../fastdnaml_1.2.2-10_arm64.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build fastdnaml-1.2.2 dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20131012-2132 chroot-autobuild/build/buildd/fastdnaml_1.2.2-10_arm64.deb: new debian package, version 2.0. size 63664 bytes: control archive=2982 bytes. 1058 bytes, 23 lines control 5023 bytes, 70 lines md5sums 185 bytes, 7 lines * postinst #!/bin/sh 160 bytes, 5 lines * postrm #!/bin/sh Package: fastdnaml Version: 1.2.2-10 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 244 Depends: libc6 (>= 2.17) Suggests: phylip Section: science Priority: optional Homepage: ftp://ftp.bio.indiana.edu/molbio/evolve/fastdnaml/fastDNAml.html Description: Tool for construction of phylogenetic trees of DNA sequences fastDNAml is a program derived from Joseph Felsenstein's version 3.3 DNAML (part of his PHYLIP package). Users should consult the documentation for DNAML before using this program. . fastDNAml is an attempt to solve the same problem as DNAML, but to do so faster and using less memory, so that larger trees and/or more bootstrap replicates become tractable. Much of fastDNAml is merely a recoding of the PHYLIP 3.3 DNAML program from PASCAL to C. . Note that the homepage of this program is not available any more and so this program will probably not see any further updates. chroot-autobuild/build/buildd/fastdnaml_1.2.2-10_arm64.deb: drwxr-xr-x root/root 0 2013-10-12 21:32 ./ drwxr-xr-x root/root 0 2013-10-12 21:32 ./usr/ drwxr-xr-x root/root 0 2013-10-12 21:32 ./usr/lib/ drwxr-xr-x root/root 0 2013-10-12 21:32 ./usr/lib/fastdnaml/ drwxr-xr-x root/root 0 2013-10-12 21:32 ./usr/lib/fastdnaml/bin/ -rwxr-xr-x root/root 140 2000-01-03 15:58 ./usr/lib/fastdnaml/bin/categories_file -rwxr-xr-x root/root 272 2000-01-03 15:58 ./usr/lib/fastdnaml/bin/treefile -rwxr-xr-x root/root 6087 2013-10-12 21:32 ./usr/lib/fastdnaml/bin/fastDNAml_boot -rwxr-xr-x root/root 172 2000-01-03 15:58 ./usr/lib/fastdnaml/bin/n_categories -rwxr-xr-x root/root 270 2000-01-03 15:58 ./usr/lib/fastdnaml/bin/usertrees -rwxr-xr-x root/root 172 2000-01-03 15:58 ./usr/lib/fastdnaml/bin/min_info -rwxr-xr-x root/root 179 2000-01-03 15:58 ./usr/lib/fastdnaml/bin/checkpoint_summary -rwxr-xr-x root/root 161 2000-01-03 15:58 ./usr/lib/fastdnaml/bin/weights -rwxr-xr-x root/root 133 2000-01-03 15:58 ./usr/lib/fastdnaml/bin/quickadd -rwxr-xr-x root/root 216 2000-01-03 15:58 ./usr/lib/fastdnaml/bin/bootstrap -rwxr-xr-x root/root 134 2000-01-03 15:58 ./usr/lib/fastdnaml/bin/printdata -rwxr-xr-x root/root 163 2000-01-03 15:58 ./usr/lib/fastdnaml/bin/categories -rwxr-xr-x root/root 3504 2000-01-03 15:58 ./usr/lib/fastdnaml/bin/clean_jumbles -rwxr-xr-x root/root 107 2013-10-12 21:32 ./usr/lib/fastdnaml/bin/scores -rwxr-xr-x root/root 136 2000-01-03 15:58 ./usr/lib/fastdnaml/bin/userlengths -rwxr-xr-x root/root 213 2000-01-03 15:58 ./usr/lib/fastdnaml/bin/jumble -rwxr-xr-x root/root 145 2000-01-03 15:58 ./usr/lib/fastdnaml/bin/clean_checkpoints -rwxr-xr-x root/root 225 2000-01-03 15:58 ./usr/lib/fastdnaml/bin/frequencies -rwxr-xr-x root/root 72 2013-10-12 21:32 ./usr/lib/fastdnaml/bin/trees2prolog -rwxr-xr-x root/root 183 2000-01-03 15:58 ./usr/lib/fastdnaml/bin/dnaml_progress -rwxr-xr-x root/root 270 2000-01-03 15:58 ./usr/lib/fastdnaml/bin/usertree -rwxr-xr-x root/root 75 2000-01-03 15:58 ./usr/lib/fastdnaml/bin/treefile2prolog -rwxr-xr-x root/root 370 2000-01-03 15:58 ./usr/lib/fastdnaml/bin/trees2NEXUS -rwxr-xr-x root/root 187 2000-01-03 15:58 ./usr/lib/fastdnaml/bin/weights_categories -rwxr-xr-x root/root 267 2000-01-03 15:58 ./usr/lib/fastdnaml/bin/global -rwxr-xr-x root/root 124 2000-01-03 15:58 ./usr/lib/fastdnaml/bin/n_files -rwxr-xr-x root/root 174 2000-01-03 15:58 ./usr/lib/fastdnaml/bin/transition -rwxr-xr-x root/root 688 2000-01-03 15:58 ./usr/lib/fastdnaml/bin/restart -rwxr-xr-x root/root 3779 2013-10-12 21:32 ./usr/lib/fastdnaml/bin/fastDNAml_loop -rwxr-xr-x root/root 162 2000-01-03 15:58 ./usr/lib/fastdnaml/bin/outgroup -rwxr-xr-x root/root 1369 2013-10-12 21:32 ./usr/lib/fastdnaml/bin/iterate_rates -rwxr-xr-x root/root 857 2000-01-03 15:58 ./usr/lib/fastdnaml/bin/ae2dnaml -rwxr-xr-x root/root 759 2000-01-03 15:58 ./usr/lib/fastdnaml/bin/out.PID drwxr-xr-x root/root 0 2013-10-12 21:32 ./usr/share/ drwxr-xr-x root/root 0 2013-10-12 21:32 ./usr/share/menu/ -rw-r--r-- root/root 191 2011-12-06 11:16 ./usr/share/menu/fastdnaml drwxr-xr-x root/root 0 2013-10-12 21:32 ./usr/share/fastdnaml/ -rw-r--r-- root/root 34150 2000-01-03 15:58 ./usr/share/fastdnaml/fastdnaml_help drwxr-xr-x root/root 0 2013-10-12 21:32 ./usr/share/man/ drwxr-xr-x root/root 0 2013-10-12 21:32 ./usr/share/man/man1/ -rw-r--r-- root/root 742 2013-10-12 21:32 ./usr/share/man/man1/fastDNAml.1.gz drwxr-xr-x root/root 0 2013-10-12 21:32 ./usr/share/doc-base/ -rw-r--r-- root/root 526 2011-12-06 11:04 ./usr/share/doc-base/fastdnaml-scripts -rw-r--r-- root/root 350 2011-12-06 11:04 ./usr/share/doc-base/fastdnaml drwxr-xr-x root/root 0 2013-10-12 21:32 ./usr/share/doc/ drwxr-xr-x root/root 0 2013-10-12 21:32 ./usr/share/doc/fastdnaml/ -rw-r--r-- root/root 1991 2011-12-06 11:04 ./usr/share/doc/fastdnaml/copyright -rw-r--r-- root/root 1727 2013-10-12 21:32 ./usr/share/doc/fastdnaml/changelog.Debian.gz -rw-r--r-- root/root 619 2011-12-06 11:16 ./usr/share/doc/fastdnaml/README.Debian drwxr-xr-x root/root 0 2013-10-12 21:32 ./usr/share/doc/fastdnaml/examples/ -rw-r--r-- root/root 2139 2000-01-03 15:58 ./usr/share/doc/fastdnaml/examples/test5I2.out -rw-r--r-- root/root 851 2000-01-03 15:58 ./usr/share/doc/fastdnaml/examples/test5W.phy -rw-r--r-- root/root 1297 2000-01-03 15:58 ./usr/share/doc/fastdnaml/examples/test5U.out.gz -rw-r--r-- root/root 717 2000-01-03 15:58 ./usr/share/doc/fastdnaml/examples/test5B.phy -rw-r--r-- root/root 2161 2000-01-03 15:58 ./usr/share/doc/fastdnaml/examples/test5TF.out -rw-r--r-- root/root 743 2000-01-03 15:58 ./usr/share/doc/fastdnaml/examples/test5TF.phy -rw-r--r-- root/root 710 2000-01-03 15:58 ./usr/share/doc/fastdnaml/examples/test5I.phy -rw-r--r-- root/root 796 2000-01-03 15:58 ./usr/share/doc/fastdnaml/examples/test5GRT.phy -rw-r--r-- root/root 903 2000-01-03 15:58 ./usr/share/doc/fastdnaml/examples/test5C.phy -rw-r--r-- root/root 2139 2000-01-03 15:58 ./usr/share/doc/fastdnaml/examples/test5I.out -rw-r--r-- root/root 780 2000-01-03 15:58 ./usr/share/doc/fastdnaml/examples/test5R.phy -rw-r--r-- root/root 941 2000-01-03 15:58 ./usr/share/doc/fastdnaml/examples/test5U.phy drwxr-xr-x root/root 0 2011-12-06 11:04 ./usr/share/doc/fastdnaml/examples/tests/ -rw-r--r-- root/root 1246 2011-12-06 11:04 ./usr/share/doc/fastdnaml/examples/tests/fastdnaml.data -rw-r--r-- root/root 635 2011-12-06 11:04 ./usr/share/doc/fastdnaml/examples/tests/Makefile -rw-r--r-- root/root 2189 2000-01-03 15:58 ./usr/share/doc/fastdnaml/examples/test5B.out -rw-r--r-- root/root 2172 2000-01-03 15:58 ./usr/share/doc/fastdnaml/examples/test5J.out -rw-r--r-- root/root 2503 2000-01-03 15:58 ./usr/share/doc/fastdnaml/examples/test5WC.out -rw-r--r-- root/root 1045 2000-01-03 15:58 ./usr/share/doc/fastdnaml/examples/test5WC.phy -rw-r--r-- root/root 2554 2000-01-03 15:58 ./usr/share/doc/fastdnaml/examples/test5C.out -rw-r--r-- root/root 2092 2000-01-03 15:58 ./usr/share/doc/fastdnaml/examples/test5GRT.out -rw-r--r-- root/root 800 2000-01-03 15:58 ./usr/share/doc/fastdnaml/examples/test5I2.phy -rw-r--r-- root/root 2370 2000-01-03 15:58 ./usr/share/doc/fastdnaml/examples/test5R.out -rw-r--r-- root/root 708 2000-01-03 15:58 ./usr/share/doc/fastdnaml/examples/test5.phy -rw-r--r-- root/root 2157 2000-01-03 15:58 ./usr/share/doc/fastdnaml/examples/test5W.out -rw-r--r-- root/root 717 2000-01-03 15:58 ./usr/share/doc/fastdnaml/examples/test5J.phy -rw-r--r-- root/root 2139 2000-01-03 15:58 ./usr/share/doc/fastdnaml/examples/test5.out -rw-r--r-- root/root 6980 2000-01-03 15:58 ./usr/share/doc/fastdnaml/fastDNAml_scripts.txt.gz drwxr-xr-x root/root 0 2013-10-12 21:32 ./usr/bin/ -rwxr-xr-x root/root 71760 2013-10-12 21:32 ./usr/bin/fastDNAml -rwxr-xr-x root/root 420 2011-12-06 11:04 ./usr/bin/fastDNAml-util lrwxrwxrwx root/root 0 2013-10-12 21:32 ./usr/share/man/man1/fastDNAml-util.1.gz -> fastDNAml.1.gz lrwxrwxrwx root/root 0 2013-10-12 21:32 ./usr/share/doc/fastdnaml/fastDNAml_doc_1.2.txt -> ../../fastdnaml/fastdnaml_help fastdnaml_1.2.2-10_arm64.changes: Format: 1.8 Date: Tue, 06 Dec 2011 12:08:00 +0100 Source: fastdnaml Binary: fastdnaml Architecture: arm64 Version: 1.2.2-10 Distribution: saucy Urgency: low Maintainer: Ubuntu Build Daemon Changed-By: Andreas Tille Description: fastdnaml - Tool for construction of phylogenetic trees of DNA sequences Closes: 639996 Changes: fastdnaml (1.2.2-10) unstable; urgency=low . * debian/control: - Use ftp download site as homepage - Fixed Vcs fields - Standards-Version: 3.9.2 (no changes needed) - Do not Build-Depend cdbs, quilt any more * Debhelper 8 (control + compat) * debian/source/format: 3.0 (quilt) * removed debian/README.source which becomes superfluous by using source format 3.0 (quilt) * Use Debian menu instead of desktop files to not confuse Gnome users Closes: #639996 Checksums-Sha1: 175b63b9056e81f0605716a67353acc00045a54c 63664 fastdnaml_1.2.2-10_arm64.deb Checksums-Sha256: 0ea1f8e5f19f6395c9df29d97b4b1a4493b8f96ace6e91b0ba6184e1b0265379 63664 fastdnaml_1.2.2-10_arm64.deb Files: ca13ca45441ad1f2711de8d5958dea8d 63664 science optional fastdnaml_1.2.2-10_arm64.deb ****************************************************************************** Built successfully ****************************************************************************** Finished at 20131012-2132 Build needed 00:00:12, 1312k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-4961541'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-4961541/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-4961541'] Unmounting chroot for build PACKAGEBUILD-4961541... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-4961541'] Removing build PACKAGEBUILD-4961541