Ubuntu
fasta3 package

fasta3 36.3.8i.14-Nov-2020-1 source package in Ubuntu

Changelog

fasta3 (36.3.8i.14-Nov-2020-1) unstable; urgency=medium

  * Team upload.
  * New upstream version
  * Standards-Version: 4.6.2 (routine-update)
  * Recommends: r-base-core

 -- Andreas Tille <email address hidden>  Sun, 25 Dec 2022 19:00:56 +0100

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any all
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Oracular release multiverse misc
Noble release multiverse misc
Mantic release multiverse misc
Lunar release multiverse misc

Downloads

File Size SHA-256 Checksum
fasta3_36.3.8i.14-Nov-2020-1.dsc 2.2 KiB ef0b00b2e7175a568549799a6391ff2d931ba0086b21057cb9d7d12e6240e440
fasta3_36.3.8i.14-Nov-2020.orig.tar.gz 1.3 MiB b4b1c3c9be6beebcbaf4215368e159d69255e34c0bdbc84affa10cdb473ce008
fasta3_36.3.8i.14-Nov-2020-1.debian.tar.xz 10.5 KiB ae0f5b50b1ffecddbf8fc15bc76ad16c9098416a7d6efb98b824b4b26ab210b8

No changes file available.

Binary packages built by this source

fasta3: tools for searching collections of biological sequences

 The FASTA programs find regions of local or global similarity between
 Protein or DNA sequences, either by searching Protein or DNA databases,
 or by identifying local duplications within a sequence. Other
 programs provide information on the statistical significance of an
 alignment. Like BLAST, FASTA can be used to infer functional and
 evolutionary relationships between sequences as well as help identify
 members of gene families.
 .
  * Protein
    - Protein-protein FASTA
    - Protein-protein Smith-Waterman (ssearch)
    - Global Protein-protein (Needleman-Wunsch) (ggsearch)
    - Global/Local protein-protein (glsearch)
    - Protein-protein with unordered peptides (fasts)
    - Protein-protein with mixed peptide sequences (fastf)
 .
  * Nucleotide
    - Nucleotide-Nucleotide (DNA/RNA fasta)
    - Ordered Nucleotides vs Nucleotide (fastm)
    - Un-ordered Nucleotides vs Nucleotide (fasts)
 .
  * Translated
    - Translated DNA (with frameshifts, e.g. ESTs)
      vs Proteins (fastx/fasty)
    - Protein vs Translated DNA (with frameshifts)
      (tfastx/tfasty)
    - Peptides vs Translated DNA (tfasts)
 .
  * Statistical Significance
    - Protein vs Protein shuffle (prss)
    - DNA vs DNA shuffle (prss)
    - Translated DNA vs Protein shuffle (prfx)
 .
  * Local Duplications
    - Local Protein alignments (lalign)
    - Plot Protein alignment "dot-plot" (plalign)
    - Local DNA alignments (lalign)
    - Plot DNA alignment "dot-plot" (plalign)
 .
 This software is often used via a web service at the
 EBI with readily indexed reference databases at
 http://www.ebi.ac.uk/Tools/fasta/.

fasta3-dbgsym: debug symbols for fasta3
fasta3-doc: user guide for FASTA tools

 The FASTA programs find regions of local or global similarity between
 Protein or DNA sequences, either by searching Protein or DNA databases,
 or by identifying local duplications within a sequence. Other
 programs provide information on the statistical significance of an
 alignment. Like BLAST, FASTA can be used to infer functional and
 evolutionary relationships between sequences as well as help identify
 members of gene families.
 .
 The use of the package's many binaries and the equally representated
 conceptual approaches towards sequence analyses are summarised in
 this PDF.