RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux bos01-arm64-006 4.2.0-34-generic #39-Ubuntu SMP Thu Mar 10 22:12:07 UTC 2016 aarch64 Buildd toolchain package versions: launchpad-buildd_138 python-lpbuildd_138 sbuild_0.65.2-1ubuntu2+ubuntu15.10.3 bzr-builder_0.7.3-0ubuntu1 bzr_2.6.0+bzr6602-2ubuntu4 git-build-recipe_0.3~git201603101733.90b6821~ubuntu15.10.1 git_1:2.5.0-1ubuntu0.2 dpkg-dev_1.18.2ubuntu5.1 python-debian_0.1.27ubuntu1 qemu-user-static_1:2.3+dfsg-5ubuntu9.2. Syncing the system clock with the buildd NTP service... 19 May 05:14:10 ntpdate[21576]: adjust time server 10.211.37.1 offset -0.000904 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-9769119', '/home/buildd/filecache-default/69d3533015def2fc9828d1a0131b60ffb6ebf960'] Unpacking chroot for build PACKAGEBUILD-9769119 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-9769119'] Mounting chroot for build PACKAGEBUILD-9769119 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-9769119', 'deb http://ftpmaster.internal/ubuntu yakkety main universe', 'deb http://ftpmaster.internal/ubuntu yakkety-security main universe', 'deb http://ftpmaster.internal/ubuntu yakkety-updates main universe', 'deb http://ftpmaster.internal/ubuntu yakkety-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-9769119 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-9769119', 'arm64'] Updating debian chroot for build PACKAGEBUILD-9769119 Get:1 http://ftpmaster.internal/ubuntu yakkety InRelease [247 kB] Get:2 http://ftpmaster.internal/ubuntu yakkety-security InRelease [92.2 kB] Get:3 http://ftpmaster.internal/ubuntu yakkety-updates InRelease [92.2 kB] Get:4 http://ftpmaster.internal/ubuntu yakkety-proposed InRelease [95.7 kB] Get:5 http://ftpmaster.internal/ubuntu yakkety/main arm64 Packages [1130 kB] Get:6 http://ftpmaster.internal/ubuntu yakkety/main Translation-en [567 kB] Get:7 http://ftpmaster.internal/ubuntu yakkety/universe arm64 Packages [7440 kB] Get:8 http://ftpmaster.internal/ubuntu yakkety/universe Translation-en [4432 kB] Get:9 http://ftpmaster.internal/ubuntu yakkety-security/main arm64 Packages [64 B] Get:10 http://ftpmaster.internal/ubuntu yakkety-security/main Translation-en [64 B] Get:11 http://ftpmaster.internal/ubuntu yakkety-security/universe arm64 Packages [64 B] Get:12 http://ftpmaster.internal/ubuntu yakkety-security/universe Translation-en [64 B] Get:13 http://ftpmaster.internal/ubuntu yakkety-updates/main arm64 Packages [64 B] Get:14 http://ftpmaster.internal/ubuntu yakkety-updates/main Translation-en [64 B] Get:15 http://ftpmaster.internal/ubuntu yakkety-updates/universe arm64 Packages [64 B] Get:16 http://ftpmaster.internal/ubuntu yakkety-updates/universe Translation-en [64 B] Get:17 http://ftpmaster.internal/ubuntu yakkety-proposed/main arm64 Packages [56.5 kB] Get:18 http://ftpmaster.internal/ubuntu yakkety-proposed/main Translation-en [29.9 kB] Get:19 http://ftpmaster.internal/ubuntu yakkety-proposed/universe arm64 Packages [206 kB] Get:20 http://ftpmaster.internal/ubuntu yakkety-proposed/universe Translation-en [105 kB] Fetched 14.5 MB in 14s (983 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: libpng16-16 The following packages will be upgraded: apt apt-transport-https bash binutils bzip2 cpp-5 debconf dmsetup dpkg dpkg-dev g++-5 gcc-5 gcc-5-base gcc-6-base grep hostname init init-system-helpers initscripts libapt-pkg5.0 libasan2 libasn1-8-heimdal libatomic1 libbz2-1.0 libcc1-0 libdevmapper1.02.1 libdpkg-perl libgcc-5-dev libgcc1 libgcrypt20 libgomp1 libgpg-error0 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libitm1 libkrb5-26-heimdal libldap-2.4-2 libperl5.22 libpng12-0 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libselinux1 libsemanage-common libsemanage1 libsepol1 libslang2 libstdc++-5-dev libstdc++6 libsystemd0 libtasn1-6 libubsan0 libudev1 libusb-0.1-4 libwind0-heimdal linux-libc-dev lsb-base make optipng perl perl-base perl-modules-5.22 policyrcd-script-zg2 sed systemd systemd-sysv sysv-rc sysvinit-utils tar tzdata ubuntu-keyring zlib1g 76 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 78.7 MB of archives. After this operation, 205 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu yakkety/main arm64 bash arm64 4.3-14ubuntu2 [518 kB] Get:2 http://ftpmaster.internal/ubuntu yakkety-proposed/main arm64 dpkg arm64 1.18.7ubuntu1 [2091 kB] Get:3 http://ftpmaster.internal/ubuntu yakkety/main arm64 grep arm64 2.25-1 [137 kB] Get:4 http://ftpmaster.internal/ubuntu yakkety/main arm64 hostname arm64 3.17ubuntu1 [11.3 kB] Get:5 http://ftpmaster.internal/ubuntu yakkety/main arm64 perl-modules-5.22 all 5.22.2-1 [2642 kB] Get:6 http://ftpmaster.internal/ubuntu yakkety/main arm64 libperl5.22 arm64 5.22.2-1 [2797 kB] Get:7 http://ftpmaster.internal/ubuntu yakkety/main arm64 perl arm64 5.22.2-1 [237 kB] Get:8 http://ftpmaster.internal/ubuntu yakkety/main arm64 perl-base arm64 5.22.2-1 [1141 kB] Get:9 http://ftpmaster.internal/ubuntu yakkety/main arm64 bzip2 arm64 1.0.6-8build1 [31.1 kB] Get:10 http://ftpmaster.internal/ubuntu yakkety/main arm64 libbz2-1.0 arm64 1.0.6-8build1 [28.6 kB] Get:11 http://ftpmaster.internal/ubuntu yakkety/main arm64 zlib1g arm64 1:1.2.8.dfsg-2ubuntu5 [45.5 kB] Get:12 http://ftpmaster.internal/ubuntu yakkety/main arm64 init-system-helpers all 1.33ubuntu1 [31.9 kB] Get:13 http://ftpmaster.internal/ubuntu yakkety/main arm64 init arm64 1.33ubuntu1 [4382 B] Get:14 http://ftpmaster.internal/ubuntu yakkety/main arm64 sed arm64 4.2.2-7.1 [134 kB] Get:15 http://ftpmaster.internal/ubuntu yakkety/main arm64 tar arm64 1.29-1 [187 kB] Get:16 http://ftpmaster.internal/ubuntu yakkety/main arm64 gcc-6-base arm64 6.1.1-3ubuntu11 [16.9 kB] Get:17 http://ftpmaster.internal/ubuntu yakkety/main arm64 libgcc1 arm64 1:6.1.1-3ubuntu11 [30.2 kB] Get:18 http://ftpmaster.internal/ubuntu yakkety/main arm64 libstdc++6 arm64 6.1.1-3ubuntu11 [368 kB] Get:19 http://ftpmaster.internal/ubuntu yakkety/main arm64 libapt-pkg5.0 arm64 1.3~exp1 [652 kB] Get:20 http://ftpmaster.internal/ubuntu yakkety/main arm64 ubuntu-keyring all 2016.05.13 [16.5 kB] Get:21 http://ftpmaster.internal/ubuntu yakkety/main arm64 apt arm64 1.3~exp1 [1010 kB] Get:22 http://ftpmaster.internal/ubuntu yakkety/main arm64 debconf all 1.5.59ubuntu1 [136 kB] Get:23 http://ftpmaster.internal/ubuntu yakkety/main arm64 libgpg-error0 arm64 1.22-2 [29.7 kB] Get:24 http://ftpmaster.internal/ubuntu yakkety/main arm64 libgcrypt20 arm64 1.7.0-2 [301 kB] Get:25 http://ftpmaster.internal/ubuntu yakkety/main arm64 sysvinit-utils arm64 2.88dsf-59.3ubuntu5 [20.9 kB] Get:26 http://ftpmaster.internal/ubuntu yakkety/main arm64 sysv-rc all 2.88dsf-59.3ubuntu5 [18.2 kB] Get:27 http://ftpmaster.internal/ubuntu yakkety/main arm64 libsystemd0 arm64 229-6ubuntu1 [172 kB] Get:28 http://ftpmaster.internal/ubuntu yakkety/main arm64 initscripts arm64 2.88dsf-59.3ubuntu5 [24.7 kB] Get:29 http://ftpmaster.internal/ubuntu yakkety/main arm64 systemd arm64 229-6ubuntu1 [2971 kB] Get:30 http://ftpmaster.internal/ubuntu yakkety-proposed/main arm64 lsb-base all 9.20160110ubuntu1 [13.7 kB] Get:31 http://ftpmaster.internal/ubuntu yakkety-proposed/main arm64 libselinux1 arm64 2.5-3 [53.9 kB] Get:32 http://ftpmaster.internal/ubuntu yakkety/main arm64 systemd-sysv arm64 229-6ubuntu1 [17.6 kB] Get:33 http://ftpmaster.internal/ubuntu yakkety/main arm64 libudev1 arm64 229-6ubuntu1 [51.0 kB] Get:34 http://ftpmaster.internal/ubuntu yakkety-proposed/main arm64 libdevmapper1.02.1 arm64 2:1.02.124-1ubuntu1 [116 kB] Get:35 http://ftpmaster.internal/ubuntu yakkety/main arm64 libsepol1 arm64 2.5-1 [175 kB] Get:36 http://ftpmaster.internal/ubuntu yakkety/main arm64 libsemanage-common all 2.5-1 [6800 B] Get:37 http://ftpmaster.internal/ubuntu yakkety/main arm64 libsemanage1 arm64 2.5-1 [65.9 kB] Get:38 http://ftpmaster.internal/ubuntu yakkety/main arm64 libusb-0.1-4 arm64 2:0.1.12-30 [15.1 kB] Get:39 http://ftpmaster.internal/ubuntu yakkety/main arm64 tzdata all 2016d-2 [168 kB] Get:40 http://ftpmaster.internal/ubuntu yakkety/main arm64 libslang2 arm64 2.3.0-2.3ubuntu1 [357 kB] Get:41 http://ftpmaster.internal/ubuntu yakkety/main arm64 libtasn1-6 arm64 4.8-1 [37.2 kB] Get:42 http://ftpmaster.internal/ubuntu yakkety/main arm64 apt-transport-https arm64 1.3~exp1 [24.3 kB] Get:43 http://ftpmaster.internal/ubuntu yakkety-proposed/main arm64 libroken18-heimdal arm64 1.7~git20160515+dfsg-1 [34.6 kB] Get:44 http://ftpmaster.internal/ubuntu yakkety-proposed/main arm64 libasn1-8-heimdal arm64 1.7~git20160515+dfsg-1 [127 kB] Get:45 http://ftpmaster.internal/ubuntu yakkety-proposed/main arm64 libheimbase1-heimdal arm64 1.7~git20160515+dfsg-1 [24.4 kB] Get:46 http://ftpmaster.internal/ubuntu yakkety-proposed/main arm64 libhcrypto4-heimdal arm64 1.7~git20160515+dfsg-1 [74.0 kB] Get:47 http://ftpmaster.internal/ubuntu yakkety-proposed/main arm64 libwind0-heimdal arm64 1.7~git20160515+dfsg-1 [47.1 kB] Get:48 http://ftpmaster.internal/ubuntu yakkety-proposed/main arm64 libhx509-5-heimdal arm64 1.7~git20160515+dfsg-1 [86.5 kB] Get:49 http://ftpmaster.internal/ubuntu yakkety-proposed/main arm64 libkrb5-26-heimdal arm64 1.7~git20160515+dfsg-1 [162 kB] Get:50 http://ftpmaster.internal/ubuntu yakkety-proposed/main arm64 libheimntlm0-heimdal arm64 1.7~git20160515+dfsg-1 [13.1 kB] Get:51 http://ftpmaster.internal/ubuntu yakkety-proposed/main arm64 libgssapi3-heimdal arm64 1.7~git20160515+dfsg-1 [77.1 kB] Get:52 http://ftpmaster.internal/ubuntu yakkety/main arm64 libsasl2-modules-db arm64 2.1.26.dfsg1-15 [12.9 kB] Get:53 http://ftpmaster.internal/ubuntu yakkety/main arm64 libsasl2-2 arm64 2.1.26.dfsg1-15 [41.5 kB] Get:54 http://ftpmaster.internal/ubuntu yakkety/main arm64 libldap-2.4-2 arm64 2.4.42+dfsg-2ubuntu4 [135 kB] Get:55 http://ftpmaster.internal/ubuntu yakkety/main arm64 libpng16-16 arm64 1.6.21-5 [159 kB] Get:56 http://ftpmaster.internal/ubuntu yakkety/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-1 [48.2 kB] Get:57 http://ftpmaster.internal/ubuntu yakkety/main arm64 binutils arm64 2.26-9ubuntu1 [2457 kB] Get:58 http://ftpmaster.internal/ubuntu yakkety/main arm64 libgomp1 arm64 6.1.1-3ubuntu11 [61.8 kB] Get:59 http://ftpmaster.internal/ubuntu yakkety/main arm64 libitm1 arm64 6.1.1-3ubuntu11 [24.9 kB] Get:60 http://ftpmaster.internal/ubuntu yakkety/main arm64 libatomic1 arm64 6.1.1-3ubuntu11 [6586 B] Get:61 http://ftpmaster.internal/ubuntu yakkety/main arm64 libasan2 arm64 5.3.1-19ubuntu1 [232 kB] Get:62 http://ftpmaster.internal/ubuntu yakkety/main arm64 libubsan0 arm64 6.1.1-3ubuntu11 [96.9 kB] Get:63 http://ftpmaster.internal/ubuntu yakkety/main arm64 g++-5 arm64 5.3.1-19ubuntu1 [25.0 MB] Get:64 http://ftpmaster.internal/ubuntu yakkety/main arm64 gcc-5 arm64 5.3.1-19ubuntu1 [5536 kB] Get:65 http://ftpmaster.internal/ubuntu yakkety/main arm64 libstdc++-5-dev arm64 5.3.1-19ubuntu1 [1354 kB] Get:66 http://ftpmaster.internal/ubuntu yakkety/main arm64 libgcc-5-dev arm64 5.3.1-19ubuntu1 [487 kB] Get:67 http://ftpmaster.internal/ubuntu yakkety/main arm64 libcc1-0 arm64 6.1.1-3ubuntu11 [27.3 kB] Get:68 http://ftpmaster.internal/ubuntu yakkety/main arm64 cpp-5 arm64 5.3.1-19ubuntu1 [23.4 MB] Get:69 http://ftpmaster.internal/ubuntu yakkety/main arm64 gcc-5-base arm64 5.3.1-19ubuntu1 [17.3 kB] Get:70 http://ftpmaster.internal/ubuntu yakkety-proposed/main arm64 dmsetup arm64 2:1.02.124-1ubuntu1 [63.4 kB] Get:71 http://ftpmaster.internal/ubuntu yakkety-proposed/main arm64 dpkg-dev all 1.18.7ubuntu1 [666 kB] Get:72 http://ftpmaster.internal/ubuntu yakkety-proposed/main arm64 libdpkg-perl all 1.18.7ubuntu1 [202 kB] Get:73 http://ftpmaster.internal/ubuntu yakkety/main arm64 make arm64 4.1-9 [137 kB] Get:74 http://ftpmaster.internal/ubuntu yakkety/universe arm64 libpng12-0 arm64 1.2.54-6ubuntu1 [105 kB] Get:75 http://ftpmaster.internal/ubuntu yakkety-proposed/main arm64 linux-libc-dev arm64 4.4.0-23.41 [813 kB] Get:76 http://ftpmaster.internal/ubuntu yakkety/main arm64 optipng arm64 0.7.6-1build1 [77.1 kB] Get:77 http://ftpmaster.internal/ubuntu yakkety/main arm64 policyrcd-script-zg2 all 0.1-3 [5610 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 78.7 MB in 16s (4735 kB/s) (Reading database ... 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Setting up ubuntu-keyring (2016.05.13) ... gpg: key 437D05B5: "Ubuntu Archive Automatic Signing Key " not changed gpg: key FBB75451: "Ubuntu CD Image Automatic Signing Key " not changed gpg: key C0B21F32: "Ubuntu Archive Automatic Signing Key (2012) " not changed gpg: key EFE21092: "Ubuntu CD Image Automatic Signing Key (2012) " not changed gpg: Total number processed: 4 gpg: unchanged: 4 (Reading database ... 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Universal Time is now: Thu May 19 05:15:17 UTC 2016. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libslang2:arm64 (2.3.0-2.3ubuntu1) ... Setting up libtasn1-6:arm64 (4.8-1) ... Setting up apt-transport-https (1.3~exp1) ... Setting up libroken18-heimdal:arm64 (1.7~git20160515+dfsg-1) ... Setting up libasn1-8-heimdal:arm64 (1.7~git20160515+dfsg-1) ... Setting up libheimbase1-heimdal:arm64 (1.7~git20160515+dfsg-1) ... Setting up libhcrypto4-heimdal:arm64 (1.7~git20160515+dfsg-1) ... Setting up libwind0-heimdal:arm64 (1.7~git20160515+dfsg-1) ... Setting up libhx509-5-heimdal:arm64 (1.7~git20160515+dfsg-1) ... Setting up libkrb5-26-heimdal:arm64 (1.7~git20160515+dfsg-1) ... Setting up libheimntlm0-heimdal:arm64 (1.7~git20160515+dfsg-1) ... Setting up libgssapi3-heimdal:arm64 (1.7~git20160515+dfsg-1) ... Setting up libsasl2-modules-db:arm64 (2.1.26.dfsg1-15) ... Setting up libsasl2-2:arm64 (2.1.26.dfsg1-15) ... Setting up libldap-2.4-2:arm64 (2.4.42+dfsg-2ubuntu4) ... Setting up libpng16-16:arm64 (1.6.21-5) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-1) ... Setting up binutils (2.26-9ubuntu1) ... Setting up libgomp1:arm64 (6.1.1-3ubuntu11) ... Setting up libitm1:arm64 (6.1.1-3ubuntu11) ... Setting up libatomic1:arm64 (6.1.1-3ubuntu11) ... Setting up gcc-5-base:arm64 (5.3.1-19ubuntu1) ... Setting up libasan2:arm64 (5.3.1-19ubuntu1) ... Setting up libubsan0:arm64 (6.1.1-3ubuntu11) ... Setting up cpp-5 (5.3.1-19ubuntu1) ... Setting up libcc1-0:arm64 (6.1.1-3ubuntu11) ... Setting up libgcc-5-dev:arm64 (5.3.1-19ubuntu1) ... Setting up gcc-5 (5.3.1-19ubuntu1) ... Setting up libstdc++-5-dev:arm64 (5.3.1-19ubuntu1) ... Setting up g++-5 (5.3.1-19ubuntu1) ... Setting up dmsetup (2:1.02.124-1ubuntu1) ... Setting up libdpkg-perl (1.18.7ubuntu1) ... Setting up make (4.1-9) ... Setting up dpkg-dev (1.18.7ubuntu1) ... Setting up libpng12-0:arm64 (1.2.54-6ubuntu1) ... Setting up linux-libc-dev:arm64 (4.4.0-23.41) ... Setting up optipng (0.7.6-1build1) ... Setting up policyrcd-script-zg2 (0.1-3) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Processing triggers for systemd (229-6ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-9769119', 'arm64', 'yakkety-proposed', '-c', 'chroot:autobuild', '--arch=arm64', '--dist=yakkety-proposed', '--purge=never', '--nolog', 'exonerate_2.4.0-2.dsc'] Initiating build PACKAGEBUILD-9769119 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.2.0-34-generic #39-Ubuntu SMP Thu Mar 10 22:12:07 UTC 2016 aarch64 sbuild (Debian sbuild) 0.65.2 (24 Mar 2015) on bos01-arm64-006.buildd ╔══════════════════════════════════════════════════════════════════════════════╗ ║ exonerate 2.4.0-2 (arm64) 19 May 2016 05:15 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: exonerate Version: 2.4.0-2 Source Version: 2.4.0-2 Distribution: yakkety-proposed Machine Architecture: arm64 Host Architecture: arm64 Build Architecture: arm64 I: NOTICE: Log filtering will replace 'build/exonerate-PTrlFB/exonerate-2.4.0' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/exonerate-PTrlFB' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-9769119/chroot-autobuild' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Local sources ───────────── exonerate_2.4.0-2.dsc exists in .; copying to chroot Check architectures ─────────────────── Check dependencies ────────────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/«BUILDDIR»/resolver-rrZ8Vy/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/«BUILDDIR»/resolver-rrZ8Vy/apt_archive ./ InRelease Get:2 copy:/«BUILDDIR»/resolver-rrZ8Vy/apt_archive ./ Release [2119 B] Ign:3 copy:/«BUILDDIR»/resolver-rrZ8Vy/apt_archive ./ Release.gpg Get:4 copy:/«BUILDDIR»/resolver-rrZ8Vy/apt_archive ./ Sources [208 B] Get:5 copy:/«BUILDDIR»/resolver-rrZ8Vy/apt_archive ./ Packages [526 B] Fetched 2853 B in 0s (163 kB/s) Reading package lists... W: The repository 'copy:/«BUILDDIR»/resolver-rrZ8Vy/apt_archive ./ Release' is not signed. Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 776 B of archives. After this operation, 0 B of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-core-dummy Authentication warning overridden. Get:1 copy:/«BUILDDIR»/resolver-rrZ8Vy/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [776 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 776 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12080 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), autotools-dev, libglib2.0-dev, libreadline-dev, dh-autoreconf Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), autotools-dev, libglib2.0-dev, libreadline-dev, dh-autoreconf dpkg-deb: building package 'sbuild-build-depends-exonerate-dummy' in '/«BUILDDIR»/resolver-LJstYZ/apt_archive/sbuild-build-depends-exonerate-dummy.deb'. Ign:1 copy:/«BUILDDIR»/resolver-LJstYZ/apt_archive ./ InRelease Get:2 copy:/«BUILDDIR»/resolver-LJstYZ/apt_archive ./ Release [2119 B] Ign:3 copy:/«BUILDDIR»/resolver-LJstYZ/apt_archive ./ Release.gpg Get:4 copy:/«BUILDDIR»/resolver-LJstYZ/apt_archive ./ Sources [450 B] Get:5 copy:/«BUILDDIR»/resolver-LJstYZ/apt_archive ./ Packages [716 B] Fetched 3285 B in 0s (184 kB/s) Reading package lists... W: The repository 'copy:/«BUILDDIR»/resolver-LJstYZ/apt_archive ./ Release' is not signed. Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install exonerate build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasprintf0v5 libcroco3 libelf1 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev libicu57 libmagic1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libreadline-dev libreadline6-dev libsigsegv2 libtimedate-perl libtinfo-dev libtool libunistring0 libxml2 m4 man-db mime-support pkg-config po-debconf python python-minimal python2.7 python2.7-minimal zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc groff libglib2.0-doc readline-doc libtool-doc gfortran | fortran95-compiler gcj-jdk less www-browser libmail-box-perl python-doc python-tk python2.7-doc binfmt-support Recommended packages: curl | wget | lynx-cur libasprintf-dev libgettextpo-dev shared-mime-info xdg-user-dirs libltdl-dev xml-core libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasprintf0v5 libcroco3 libelf1 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev libicu57 libmagic1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libreadline-dev libreadline6-dev libsigsegv2 libtimedate-perl libtinfo-dev libtool libunistring0 libxml2 m4 man-db mime-support pkg-config po-debconf python python-minimal python2.7 python2.7-minimal sbuild-build-depends-exonerate-dummy zlib1g-dev 0 upgraded, 52 newly installed, 0 to remove and 0 not upgraded. Need to get 21.9 MB of archives. After this operation, 96.4 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-exonerate-dummy Authentication warning overridden. Get:1 copy:/«BUILDDIR»/resolver-LJstYZ/apt_archive ./ sbuild-build-depends-exonerate-dummy 0.invalid.0 [962 B] Get:2 http://ftpmaster.internal/ubuntu yakkety/main arm64 groff-base arm64 1.22.3-7 [1122 kB] Get:3 http://ftpmaster.internal/ubuntu yakkety/main arm64 bsdmainutils arm64 9.0.6ubuntu3 [170 kB] Get:4 http://ftpmaster.internal/ubuntu yakkety/main arm64 libpipeline1 arm64 1.4.1-2 [21.9 kB] Get:5 http://ftpmaster.internal/ubuntu yakkety/main arm64 man-db arm64 2.7.5-1 [832 kB] Get:6 http://ftpmaster.internal/ubuntu yakkety/main arm64 libpcrecpp0v5 arm64 2:8.38-3.1 [14.7 kB] Get:7 http://ftpmaster.internal/ubuntu yakkety/main arm64 libunistring0 arm64 0.9.3-5.2ubuntu1 [251 kB] Get:8 http://ftpmaster.internal/ubuntu yakkety/main arm64 libpython2.7-minimal arm64 2.7.11-9 [334 kB] Get:9 http://ftpmaster.internal/ubuntu yakkety/main arm64 python2.7-minimal arm64 2.7.11-9 [1122 kB] Get:10 http://ftpmaster.internal/ubuntu yakkety/main arm64 python-minimal arm64 2.7.11-1 [28.1 kB] Get:11 http://ftpmaster.internal/ubuntu yakkety/main arm64 mime-support all 3.59ubuntu1 [31.0 kB] Get:12 http://ftpmaster.internal/ubuntu yakkety-proposed/main arm64 libexpat1 arm64 2.1.1-1ubuntu1 [58.3 kB] Get:13 http://ftpmaster.internal/ubuntu yakkety/main arm64 libpython2.7-stdlib arm64 2.7.11-9 [1813 kB] Get:14 http://ftpmaster.internal/ubuntu yakkety/main arm64 python2.7 arm64 2.7.11-9 [221 kB] Get:15 http://ftpmaster.internal/ubuntu yakkety/main arm64 libpython-stdlib arm64 2.7.11-1 [7684 B] Get:16 http://ftpmaster.internal/ubuntu yakkety/main arm64 python arm64 2.7.11-1 [137 kB] Get:17 http://ftpmaster.internal/ubuntu yakkety/main arm64 libmagic1 arm64 1:5.25-2ubuntu1 [209 kB] Get:18 http://ftpmaster.internal/ubuntu yakkety/main arm64 file arm64 1:5.25-2ubuntu1 [21.2 kB] Get:19 http://ftpmaster.internal/ubuntu yakkety/main arm64 libasprintf0v5 arm64 0.19.7-2ubuntu3 [6420 B] Get:20 http://ftpmaster.internal/ubuntu yakkety/main arm64 gettext-base arm64 0.19.7-2ubuntu3 [45.0 kB] Get:21 http://ftpmaster.internal/ubuntu yakkety/main arm64 libelf1 arm64 0.165-3ubuntu1 [36.2 kB] Get:22 http://ftpmaster.internal/ubuntu yakkety/main arm64 libglib2.0-0 arm64 2.48.1-1 [926 kB] Get:23 http://ftpmaster.internal/ubuntu yakkety/main arm64 libglib2.0-data all 2.48.1-1 [131 kB] Get:24 http://ftpmaster.internal/ubuntu yakkety/main arm64 libicu57 arm64 57.1-1 [7529 kB] Get:25 http://ftpmaster.internal/ubuntu yakkety/main arm64 libxml2 arm64 2.9.3+dfsg1-1build1 [565 kB] Get:26 http://ftpmaster.internal/ubuntu yakkety/main arm64 libsigsegv2 arm64 2.10-5 [13.3 kB] Get:27 http://ftpmaster.internal/ubuntu yakkety/main arm64 m4 arm64 1.4.17-5 [184 kB] Get:28 http://ftpmaster.internal/ubuntu yakkety-proposed/main arm64 autoconf all 2.69-10 [321 kB] Get:29 http://ftpmaster.internal/ubuntu yakkety-proposed/main arm64 autotools-dev all 20160430.1 [39.6 kB] Get:30 http://ftpmaster.internal/ubuntu yakkety/main arm64 automake all 1:1.15-4ubuntu1 [510 kB] Get:31 http://ftpmaster.internal/ubuntu yakkety/main arm64 autopoint all 0.19.7-2ubuntu3 [406 kB] Get:32 http://ftpmaster.internal/ubuntu yakkety/main arm64 libcroco3 arm64 0.6.11-1 [66.0 kB] Get:33 http://ftpmaster.internal/ubuntu yakkety/main arm64 gettext arm64 0.19.7-2ubuntu3 [1015 kB] Get:34 http://ftpmaster.internal/ubuntu yakkety/main arm64 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:35 http://ftpmaster.internal/ubuntu yakkety/main arm64 po-debconf all 1.0.19 [234 kB] Get:36 http://ftpmaster.internal/ubuntu yakkety/main arm64 libarchive-zip-perl all 1.57-1 [84.0 kB] Get:37 http://ftpmaster.internal/ubuntu yakkety/main arm64 libfile-stripnondeterminism-perl all 0.016-1 [11.0 kB] Get:38 http://ftpmaster.internal/ubuntu yakkety/main arm64 libtimedate-perl all 2.3000-2 [37.5 kB] Get:39 http://ftpmaster.internal/ubuntu yakkety/main arm64 dh-strip-nondeterminism all 0.016-1 [4858 B] Get:40 http://ftpmaster.internal/ubuntu yakkety/main arm64 libtool all 2.4.6-0.1 [193 kB] Get:41 http://ftpmaster.internal/ubuntu yakkety/main arm64 dh-autoreconf all 12 [15.8 kB] Get:42 http://ftpmaster.internal/ubuntu yakkety/main arm64 debhelper all 9.20160403ubuntu1 [711 kB] Get:43 http://ftpmaster.internal/ubuntu yakkety/main arm64 libglib2.0-bin arm64 2.48.1-1 [37.6 kB] Get:44 http://ftpmaster.internal/ubuntu yakkety/main arm64 libpcre16-3 arm64 2:8.38-3.1 [115 kB] Get:45 http://ftpmaster.internal/ubuntu yakkety/main arm64 libpcre32-3 arm64 2:8.38-3.1 [110 kB] Get:46 http://ftpmaster.internal/ubuntu yakkety/main arm64 libpcre3-dev arm64 2:8.38-3.1 [445 kB] Get:47 http://ftpmaster.internal/ubuntu yakkety/main arm64 pkg-config arm64 0.29.1-0ubuntu1 [42.9 kB] Get:48 http://ftpmaster.internal/ubuntu yakkety/main arm64 zlib1g-dev arm64 1:1.2.8.dfsg-2ubuntu5 [162 kB] Get:49 http://ftpmaster.internal/ubuntu yakkety/main arm64 libglib2.0-dev arm64 2.48.1-1 [1300 kB] Get:50 http://ftpmaster.internal/ubuntu yakkety/main arm64 libtinfo-dev arm64 6.0+20160213-1ubuntu1 [71.5 kB] Get:51 http://ftpmaster.internal/ubuntu yakkety/main arm64 libreadline6-dev arm64 6.3-8ubuntu2 [117 kB] Get:52 http://ftpmaster.internal/ubuntu yakkety/main arm64 libreadline-dev arm64 6.3-8ubuntu2 [992 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 21.9 MB in 1s (19.9 MB/s) Selecting previously unselected package groff-base. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12080 files and directories currently installed.) Preparing to unpack .../groff-base_1.22.3-7_arm64.deb ... Unpacking groff-base (1.22.3-7) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../bsdmainutils_9.0.6ubuntu3_arm64.deb ... Unpacking bsdmainutils (9.0.6ubuntu3) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../libpipeline1_1.4.1-2_arm64.deb ... 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Setting up libpython2.7-minimal:arm64 (2.7.11-9) ... Setting up python2.7-minimal (2.7.11-9) ... Setting up python-minimal (2.7.11-1) ... Selecting previously unselected package python. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13364 files and directories currently installed.) Preparing to unpack .../python_2.7.11-1_arm64.deb ... Unpacking python (2.7.11-1) ... Selecting previously unselected package libmagic1:arm64. 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Preparing to unpack .../sbuild-build-depends-exonerate-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-exonerate-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up groff-base (1.22.3-7) ... Setting up bsdmainutils (9.0.6ubuntu3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libpipeline1:arm64 (1.4.1-2) ... Setting up man-db (2.7.5-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libpcrecpp0v5:arm64 (2:8.38-3.1) ... Setting up libunistring0:arm64 (0.9.3-5.2ubuntu1) ... Setting up mime-support (3.59ubuntu1) ... Setting up libexpat1:arm64 (2.1.1-1ubuntu1) ... Setting up libpython2.7-stdlib:arm64 (2.7.11-9) ... Setting up python2.7 (2.7.11-9) ... Setting up libpython-stdlib:arm64 (2.7.11-1) ... Setting up python (2.7.11-1) ... Setting up libmagic1:arm64 (1:5.25-2ubuntu1) ... Setting up file (1:5.25-2ubuntu1) ... Setting up libasprintf0v5:arm64 (0.19.7-2ubuntu3) ... Setting up gettext-base (0.19.7-2ubuntu3) ... Setting up libelf1:arm64 (0.165-3ubuntu1) ... Setting up libglib2.0-0:arm64 (2.48.1-1) ... No schema files found: doing nothing. Setting up libglib2.0-data (2.48.1-1) ... Setting up libicu57:arm64 (57.1-1) ... Setting up libxml2:arm64 (2.9.3+dfsg1-1build1) ... Setting up libsigsegv2:arm64 (2.10-5) ... Setting up m4 (1.4.17-5) ... Setting up autoconf (2.69-10) ... Setting up autotools-dev (20160430.1) ... Setting up automake (1:1.15-4ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up autopoint (0.19.7-2ubuntu3) ... Setting up libcroco3:arm64 (0.6.11-1) ... Setting up gettext (0.19.7-2ubuntu3) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up po-debconf (1.0.19) ... Setting up libarchive-zip-perl (1.57-1) ... Setting up libfile-stripnondeterminism-perl (0.016-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libtool (2.4.6-0.1) ... Setting up libglib2.0-bin (2.48.1-1) ... Setting up libpcre16-3:arm64 (2:8.38-3.1) ... Setting up libpcre32-3:arm64 (2:8.38-3.1) ... Setting up libpcre3-dev:arm64 (2:8.38-3.1) ... Setting up pkg-config (0.29.1-0ubuntu1) ... Setting up zlib1g-dev:arm64 (1:1.2.8.dfsg-2ubuntu5) ... Setting up libglib2.0-dev (2.48.1-1) ... Setting up libtinfo-dev:arm64 (6.0+20160213-1ubuntu1) ... Setting up libreadline6-dev:arm64 (6.3-8ubuntu2) ... Setting up libreadline-dev:arm64 (6.3-8ubuntu2) ... Setting up dh-autoreconf (12) ... Setting up debhelper (9.20160403ubuntu1) ... Setting up sbuild-build-depends-exonerate-dummy (0.invalid.0) ... Setting up dh-strip-nondeterminism (0.016-1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 4.2.0-34-generic arm64 (aarch64) Toolchain package versions: binutils_2.26-9ubuntu1 dpkg-dev_1.18.7ubuntu1 g++-5_5.3.1-19ubuntu1 gcc-5_5.3.1-19ubuntu1 libc6-dev_2.23-0ubuntu3 libstdc++-5-dev_5.3.1-19ubuntu1 libstdc++6_6.1.1-3ubuntu11 linux-libc-dev_4.4.0-23.41 Package versions: adduser_3.113+nmu3ubuntu4 advancecomp_1.20-1 apt_1.3~exp1 apt-transport-https_1.3~exp1 autoconf_2.69-10 automake_1:1.15-4ubuntu1 autopoint_0.19.7-2ubuntu3 autotools-dev_20160430.1 base-files_9.6ubuntu1 base-passwd_3.5.39 bash_4.3-14ubuntu2 binutils_2.26-9ubuntu1 bsdmainutils_9.0.6ubuntu3 bsdutils_1:2.27.1-6ubuntu3 build-essential_12.1ubuntu2 bzip2_1.0.6-8build1 ca-certificates_20160104ubuntu1 coreutils_8.25-2ubuntu2 cpp_4:5.3.1-1ubuntu1 cpp-5_5.3.1-19ubuntu1 dash_0.5.8-2.1ubuntu2 debconf_1.5.59ubuntu1 debhelper_9.20160403ubuntu1 debianutils_4.7 dh-autoreconf_12 dh-strip-nondeterminism_0.016-1 diffutils_1:3.3-3 dmsetup_2:1.02.124-1ubuntu1 dpkg_1.18.7ubuntu1 dpkg-dev_1.18.7ubuntu1 e2fslibs_1.42.13-1ubuntu1 e2fsprogs_1.42.13-1ubuntu1 fakeroot_1.20.2-1ubuntu1 file_1:5.25-2ubuntu1 findutils_4.6.0+git+20160126-2 g++_4:5.3.1-1ubuntu1 g++-5_5.3.1-19ubuntu1 gcc_4:5.3.1-1ubuntu1 gcc-5_5.3.1-19ubuntu1 gcc-5-base_5.3.1-19ubuntu1 gcc-6-base_6.1.1-3ubuntu11 gettext_0.19.7-2ubuntu3 gettext-base_0.19.7-2ubuntu3 gnupg_1.4.20-1ubuntu3 gpgv_1.4.20-1ubuntu3 grep_2.25-1 groff-base_1.22.3-7 gzip_1.6-4ubuntu1 hostname_3.17ubuntu1 init_1.33ubuntu1 init-system-helpers_1.33ubuntu1 initscripts_2.88dsf-59.3ubuntu5 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3 libapparmor1_2.10.95-0ubuntu2 libapt-pkg5.0_1.3~exp1 libarchive-zip-perl_1.57-1 libasan2_5.3.1-19ubuntu1 libasn1-8-heimdal_1.7~git20160515+dfsg-1 libasprintf0v5_0.19.7-2ubuntu3 libatomic1_6.1.1-3ubuntu11 libattr1_1:2.4.47-2 libaudit-common_1:2.4.5-1ubuntu2 libaudit1_1:2.4.5-1ubuntu2 libblkid1_2.27.1-6ubuntu3 libbz2-1.0_1.0.6-8build1 libc-bin_2.23-0ubuntu3 libc-dev-bin_2.23-0ubuntu3 libc6_2.23-0ubuntu3 libc6-dev_2.23-0ubuntu3 libcap2_1:2.24-12 libcap2-bin_1:2.24-12 libcc1-0_6.1.1-3ubuntu11 libcomerr2_1.42.13-1ubuntu1 libcroco3_0.6.11-1 libcryptsetup4_2:1.6.6-5ubuntu2 libcurl3-gnutls_7.47.0-1ubuntu2 libdb5.3_5.3.28-11 libdebconfclient0_0.198ubuntu1 libdevmapper1.02.1_2:1.02.124-1ubuntu1 libdpkg-perl_1.18.7ubuntu1 libelf1_0.165-3ubuntu1 libexpat1_2.1.1-1ubuntu1 libfakeroot_1.20.2-1ubuntu1 libfdisk1_2.27.1-6ubuntu3 libffi6_3.2.1-4 libfile-stripnondeterminism-perl_0.016-1 libgcc-5-dev_5.3.1-19ubuntu1 libgcc1_1:6.1.1-3ubuntu11 libgcrypt20_1.7.0-2 libgdbm3_1.8.3-13.1 libglib2.0-0_2.48.1-1 libglib2.0-bin_2.48.1-1 libglib2.0-data_2.48.1-1 libglib2.0-dev_2.48.1-1 libgmp10_2:6.1.0+dfsg-2 libgnutls30_3.4.10-4ubuntu1 libgomp1_6.1.1-3ubuntu11 libgpg-error0_1.22-2 libgssapi-krb5-2_1.13.2+dfsg-5 libgssapi3-heimdal_1.7~git20160515+dfsg-1 libhcrypto4-heimdal_1.7~git20160515+dfsg-1 libheimbase1-heimdal_1.7~git20160515+dfsg-1 libheimntlm0-heimdal_1.7~git20160515+dfsg-1 libhogweed4_3.2-1 libhx509-5-heimdal_1.7~git20160515+dfsg-1 libicu57_57.1-1 libidn11_1.32-3ubuntu1 libisl15_0.16.1-1 libitm1_6.1.1-3ubuntu11 libk5crypto3_1.13.2+dfsg-5 libkeyutils1_1.5.9-8ubuntu1 libkmod2_22-1ubuntu4 libkrb5-26-heimdal_1.7~git20160515+dfsg-1 libkrb5-3_1.13.2+dfsg-5 libkrb5support0_1.13.2+dfsg-5 libldap-2.4-2_2.4.42+dfsg-2ubuntu4 liblockfile-bin_1.09-6ubuntu1 liblockfile1_1.09-6ubuntu1 liblz4-1_0.0~r131-2ubuntu2 liblzma5_5.1.1alpha+20120614-2ubuntu2 libmagic1_1:5.25-2ubuntu1 libmount1_2.27.1-6ubuntu3 libmpc3_1.0.3-1 libmpfr4_3.1.4-1 libncurses5_6.0+20160213-1ubuntu1 libncursesw5_6.0+20160213-1ubuntu1 libnettle6_3.2-1 libp11-kit0_0.23.2-3 libpam-modules_1.1.8-3.2ubuntu2 libpam-modules-bin_1.1.8-3.2ubuntu2 libpam-runtime_1.1.8-3.2ubuntu2 libpam0g_1.1.8-3.2ubuntu2 libpcre16-3_2:8.38-3.1 libpcre3_2:8.38-3.1 libpcre3-dev_2:8.38-3.1 libpcre32-3_2:8.38-3.1 libpcrecpp0v5_2:8.38-3.1 libperl5.22_5.22.2-1 libpipeline1_1.4.1-2 libpng12-0_1.2.54-6ubuntu1 libpng16-16_1.6.21-5 libprocps4_2:3.3.10-4ubuntu2 libpython-stdlib_2.7.11-1 libpython2.7-minimal_2.7.11-9 libpython2.7-stdlib_2.7.11-9 libreadline-dev_6.3-8ubuntu2 libreadline6_6.3-8ubuntu2 libreadline6-dev_6.3-8ubuntu2 libroken18-heimdal_1.7~git20160515+dfsg-1 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.26.dfsg1-15 libsasl2-modules-db_2.1.26.dfsg1-15 libseccomp2_2.2.3-3ubuntu3 libselinux1_2.5-3 libsemanage-common_2.5-1 libsemanage1_2.5-1 libsepol1_2.5-1 libsigsegv2_2.10-5 libslang2_2.3.0-2.3ubuntu1 libsmartcols1_2.27.1-6ubuntu3 libsqlite3-0_3.11.0-1ubuntu1 libss2_1.42.13-1ubuntu1 libssl1.0.0_1.0.2g-1ubuntu4 libstdc++-5-dev_5.3.1-19ubuntu1 libstdc++6_6.1.1-3ubuntu11 libsystemd0_229-6ubuntu1 libtasn1-6_4.8-1 libtimedate-perl_2.3000-2 libtinfo-dev_6.0+20160213-1ubuntu1 libtinfo5_6.0+20160213-1ubuntu1 libtool_2.4.6-0.1 libubsan0_6.1.1-3ubuntu11 libudev1_229-6ubuntu1 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-30 libustr-1.0-1_1.0.4-5 libuuid1_2.27.1-6ubuntu3 libwind0-heimdal_1.7~git20160515+dfsg-1 libxml2_2.9.3+dfsg1-1build1 linux-libc-dev_4.4.0-23.41 lockfile-progs_0.1.17 login_1:4.2-3.1ubuntu5 lsb-base_9.20160110ubuntu1 m4_1.4.17-5 make_4.1-9 man-db_2.7.5-1 mawk_1.3.3-17ubuntu2 mime-support_3.59ubuntu1 mount_2.27.1-6ubuntu3 multiarch-support_2.23-0ubuntu3 ncurses-base_6.0+20160213-1ubuntu1 ncurses-bin_6.0+20160213-1ubuntu1 openssl_1.0.2g-1ubuntu4 optipng_0.7.6-1build1 passwd_1:4.2-3.1ubuntu5 patch_2.7.5-1 perl_5.22.2-1 perl-base_5.22.2-1 perl-modules-5.22_5.22.2-1 pkg-config_0.29.1-0ubuntu1 pkg-create-dbgsym_0.72 pkgbinarymangler_129 po-debconf_1.0.19 policyrcd-script-zg2_0.1-3 procps_2:3.3.10-4ubuntu2 python_2.7.11-1 python-minimal_2.7.11-1 python2.7_2.7.11-9 python2.7-minimal_2.7.11-9 readline-common_6.3-8ubuntu2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-exonerate-dummy_0.invalid.0 sed_4.2.2-7.1 sensible-utils_0.0.9 systemd_229-6ubuntu1 systemd-sysv_229-6ubuntu1 sysv-rc_2.88dsf-59.3ubuntu5 sysvinit-utils_2.88dsf-59.3ubuntu5 tar_1.29-1 tzdata_2016d-2 ubuntu-keyring_2016.05.13 util-linux_2.27.1-6ubuntu3 xz-utils_5.1.1alpha+20120614-2ubuntu2 zlib1g_1:1.2.8.dfsg-2ubuntu5 zlib1g-dev_1:1.2.8.dfsg-2ubuntu5 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: Signature made Wed May 18 12:12:44 2016 UTC using RSA key ID D1C646D1 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./exonerate_2.4.0-2.dsc dpkg-source: info: extracting exonerate in exonerate-2.4.0 dpkg-source: info: unpacking exonerate_2.4.0.orig.tar.gz dpkg-source: info: unpacking exonerate_2.4.0-2.debian.tar.xz dpkg-source: info: applying fix_build-as-needed.patch dpkg-source: info: applying manpages.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying manpagesyntax.patch Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── DEB_BUILD_OPTIONS=parallel=4 HOME=/home/buildd LANG=C.UTF-8 LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/«PKGBUILDDIR» SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /«CHROOT» su buildd -s /bin/sh -c cd '/«PKGBUILDDIR»' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ───────────────── dpkg-buildpackage: info: source package exonerate dpkg-buildpackage: info: source version 2.4.0-2 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build exonerate-2.4.0 dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean --with autoreconf dh_testdir debian/rules override_dh_auto_clean make[1]: Entering directory '/«PKGBUILDDIR»' dh_auto_clean rm -rf codegen make[1]: Leaving directory '/«PKGBUILDDIR»' dh_autoreconf_clean dh_clean debian/rules build-arch dh build-arch --with autoreconf dh_testdir -a dh_update_autotools_config -a debian/rules override_dh_autoreconf make[1]: Entering directory '/«PKGBUILDDIR»' dh_autoreconf --as-needed aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in' automake: warning: autoconf input should be named 'configure.ac', not 'configure.in' configure.in:8: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated. For more info, see: configure.in:8: http://www.gnu.org/software/automake/manual/automake.html#Modernize-AM_005fINIT_005fAUTOMAKE-invocation configure.in:9: installing './compile' src/bsdp/Makefile.am:6: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') src/bsdp/Makefile.am: installing './depcomp' automake: warning: autoconf input should be named 'configure.ac', not 'configure.in' parallel-tests: installing './test-driver' src/c4/Makefile.am:7: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') src/comparison/Makefile.am:7: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') src/database/Makefile.am:6: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') src/general/Makefile.am:9: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') src/hub/Makefile.am:5: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') src/model/Makefile.am:11: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') src/program/Makefile.am:4: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') src/sdp/Makefile.am:7: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') src/sequence/Makefile.am:6: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') src/struct/Makefile.am:14: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') src/util/Makefile.am:12: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') make[1]: Leaving directory '/«PKGBUILDDIR»' dh_auto_configure -a ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --libexecdir=\${prefix}/lib/aarch64-linux-gnu --disable-maintainer-mode --disable-dependency-tracking configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking for style of include used by make... GNU checking dependency style of gcc... none checking whether make sets $(MAKE)... (cached) yes checking for an ANSI C-conforming const... yes checking for inline... inline checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking math.h usability... yes checking math.h presence... yes checking for math.h... yes checking for strings.h... (cached) yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking for sys/stat.h... (cached) yes checking for sys/types.h... (cached) yes checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking for unistd.h... (cached) yes checking build system type... aarch64-unknown-linux-gnu checking host system type... aarch64-unknown-linux-gnu Set host to aarch64-unknown-linux-gnu aarch64-unknown-linux-gnu *** Unknown build platform: aarch64-unknown-linux-gnu *** Set source_root_dir to /«PKGBUILDDIR» ---------------------------------------------------------------- checking for socklen_t... yes checking for pkg-config... /usr/bin/pkg-config Using GLIB-2 Turning assertions off Turning paranoid options off Not using options for profiling with gprof Not using options for analysis with gcov Adding support for LARGE FILES (>2Gb) for a 32 bit system Using COMPILED C4 MODELS Installing UTILITIES Using PTHREADS ---------------------------------------------------------------- checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating doc/Makefile config.status: creating doc/man/Makefile config.status: creating doc/man/man1/Makefile config.status: creating src/Makefile config.status: creating src/general/Makefile config.status: creating src/sequence/Makefile config.status: creating src/database/Makefile config.status: creating src/struct/Makefile config.status: creating src/comparison/Makefile config.status: creating src/c4/Makefile config.status: creating src/bsdp/Makefile config.status: creating src/sdp/Makefile config.status: creating src/hub/Makefile config.status: creating src/model/Makefile config.status: creating src/program/Makefile config.status: creating src/util/Makefile config.status: creating test/Makefile config.status: creating test/util/Makefile config.status: creating test/ipcress/Makefile config.status: creating test/exonerate/Makefile config.status: creating test/data/Makefile config.status: creating test/data/cdna/Makefile config.status: creating test/data/protein/Makefile config.status: executing depfiles commands configure: WARNING: unrecognized options: --disable-maintainer-mode dh_auto_build -a make -j1 make[1]: Entering directory '/«PKGBUILDDIR»' Making all in doc make[2]: Entering directory '/«PKGBUILDDIR»/doc' Making all in man make[3]: Entering directory '/«PKGBUILDDIR»/doc/man' Making all in man1 make[4]: Entering directory '/«PKGBUILDDIR»/doc/man/man1' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/«PKGBUILDDIR»/doc/man/man1' make[4]: Entering directory '/«PKGBUILDDIR»/doc/man' make[4]: Nothing to be done for 'all-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/doc/man' make[3]: Leaving directory '/«PKGBUILDDIR»/doc/man' make[3]: Entering directory '/«PKGBUILDDIR»/doc' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/«PKGBUILDDIR»/doc' make[2]: Leaving directory '/«PKGBUILDDIR»/doc' Making all in src make[2]: Entering directory '/«PKGBUILDDIR»/src' Making all in struct make[3]: Entering directory '/«PKGBUILDDIR»/src/struct' gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -DCUSTOM_GUINT64_FORMAT="\"llu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o fsm.test.o fsm.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -DCUSTOM_GUINT64_FORMAT="\"llu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o fsm.o fsm.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -DCUSTOM_GUINT64_FORMAT="\"llu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o recyclebin.o recyclebin.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o fsm.test fsm.test.o fsm.o recyclebin.o -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -DCUSTOM_GUINT64_FORMAT="\"llu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o matrix.test.o matrix.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -DCUSTOM_GUINT64_FORMAT="\"llu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o matrix.o matrix.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o matrix.test matrix.test.o matrix.o -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -DCUSTOM_GUINT64_FORMAT="\"llu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o pqueue.test.o pqueue.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -DCUSTOM_GUINT64_FORMAT="\"llu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o pqueue.o pqueue.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o pqueue.test pqueue.test.o pqueue.o recyclebin.o -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -DCUSTOM_GUINT64_FORMAT="\"llu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o slist.test.o slist.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -DCUSTOM_GUINT64_FORMAT="\"llu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o slist.o slist.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o slist.test slist.test.o slist.o recyclebin.o -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -DCUSTOM_GUINT64_FORMAT="\"llu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o rangetree.test.o rangetree.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -DCUSTOM_GUINT64_FORMAT="\"llu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o rangetree.o rangetree.c rangetree.c: In function ‘RangeTree_insert_recent’: rangetree.c:151:5: warning: ‘g_tree_traverse’ is deprecated [-Wdeprecated-declarations] g_tree_traverse(rt->recent_data, RangeTree_insert_recent_collect, ^ In file included from /usr/include/glib-2.0/glib.h:88:0, from rangetree.h:23, from rangetree.c:18: /usr/include/glib-2.0/glib/gtree.h:88:10: note: declared here void g_tree_traverse (GTree *tree, ^ gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o rangetree.test rangetree.test.o rangetree.o recyclebin.o -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -DCUSTOM_GUINT64_FORMAT="\"llu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o vfsm.test.o vfsm.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -DCUSTOM_GUINT64_FORMAT="\"llu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o vfsm.o vfsm.c In file included from /usr/include/glib-2.0/glib.h:62:0, from vfsm.h:19, from vfsm.c:25: vfsm.c: In function ‘VFSM_info’: vfsm.c:83:15: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 9 has type ‘VFSM_Int {aka long unsigned int}’ [-Wformat=] g_message("VFSM info:\n" ^ /usr/include/glib-2.0/glib/gmessages.h:158:32: note: in definition of macro ‘g_message’ __VA_ARGS__) ^ vfsm.c:83:15: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 10 has type ‘VFSM_Int {aka long unsigned int}’ [-Wformat=] g_message("VFSM info:\n" ^ /usr/include/glib-2.0/glib/gmessages.h:158:32: note: in definition of macro ‘g_message’ __VA_ARGS__) ^ vfsm.c:83:15: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 11 has type ‘VFSM_Int {aka long unsigned int}’ [-Wformat=] g_message("VFSM info:\n" ^ /usr/include/glib-2.0/glib/gmessages.h:158:32: note: in definition of macro ‘g_message’ __VA_ARGS__) ^ vfsm.c:83:15: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 12 has type ‘VFSM_Int {aka long unsigned int}’ [-Wformat=] g_message("VFSM info:\n" ^ /usr/include/glib-2.0/glib/gmessages.h:158:32: note: in definition of macro ‘g_message’ __VA_ARGS__) ^ vfsm.c:83:15: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 13 has type ‘VFSM_Int {aka long unsigned int}’ [-Wformat=] g_message("VFSM info:\n" ^ /usr/include/glib-2.0/glib/gmessages.h:158:32: note: in definition of macro ‘g_message’ __VA_ARGS__) ^ vfsm.c:107:17: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘VFSM_Int {aka long unsigned int}’ [-Wformat=] g_print(" branch_size [%d] [%" VFSM_PRINT_FORMAT "]\n", ^ gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o vfsm.test vfsm.test.o vfsm.o -lm -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -DCUSTOM_GUINT64_FORMAT="\"llu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o recyclebin.test.o recyclebin.test.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o recyclebin.test recyclebin.test.o recyclebin.o -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -DCUSTOM_GUINT64_FORMAT="\"llu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o sparsecache.test.o sparsecache.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -DCUSTOM_GUINT64_FORMAT="\"llu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o sparsecache.o sparsecache.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o sparsecache.test sparsecache.test.o sparsecache.o -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -DCUSTOM_GUINT64_FORMAT="\"llu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o dejavu.test.o dejavu.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -DCUSTOM_GUINT64_FORMAT="\"llu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o dejavu.o dejavu.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o dejavu.test dejavu.test.o dejavu.o -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -DCUSTOM_GUINT64_FORMAT="\"llu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o bitarray.test.o bitarray.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -DCUSTOM_GUINT64_FORMAT="\"llu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o bitarray.o bitarray.c bitarray.c: In function ‘BitArray_read’: bitarray.c:83:5: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(ba->data, sizeof(guchar), size, fp); ^ bitarray.c: In function ‘BitArray_read_int’: bitarray.c:189:5: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(&num, sizeof(guint64), 1, fp); ^ gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o bitarray.test bitarray.test.o bitarray.o -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -DCUSTOM_GUINT64_FORMAT="\"llu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o splaytree.test.o splaytree.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -DCUSTOM_GUINT64_FORMAT="\"llu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o splaytree.o splaytree.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o splaytree.test splaytree.test.o splaytree.o recyclebin.o -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -DCUSTOM_GUINT64_FORMAT="\"llu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o noitree.test.o noitree.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -DCUSTOM_GUINT64_FORMAT="\"llu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o noitree.o noitree.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o noitree.test noitree.test.o noitree.o recyclebin.o splaytree.o -lglib-2.0 make[3]: Leaving directory '/«PKGBUILDDIR»/src/struct' Making all in general make[3]: Entering directory '/«PKGBUILDDIR»/src/general' gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DCUSTOM_GUINT64_FORMAT="\"llu\"" -I../../src/struct -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o argument.test.o argument.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DCUSTOM_GUINT64_FORMAT="\"llu\"" -I../../src/struct -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o argument.o argument.c argument.c: In function ‘ArgumentParse_boolean’: argument.c:138:9: warning: ‘g_strcasecmp’ is deprecated [-Wdeprecated-declarations] if(!g_strcasecmp(arg_string, true_string[i])) ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from argument.h:26, from argument.c:16: /usr/include/glib-2.0/glib/gstrfuncs.h:200:23: note: declared here gint g_strcasecmp (const gchar *s1, ^ argument.c:140:9: warning: ‘g_strcasecmp’ is deprecated [-Wdeprecated-declarations] if(!g_strcasecmp(arg_string, false_string[i])) ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from argument.h:26, from argument.c:16: /usr/include/glib-2.0/glib/gstrfuncs.h:200:23: note: declared here gint g_strcasecmp (const gchar *s1, ^ argument.c: In function ‘Argument_show_version’: argument.c:173:30: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] g_print("Built on %s\n", __DATE__); ^ argument.c: In function ‘main’: argument.c:307:9: warning: ‘g_thread_init’ is deprecated [-Wdeprecated-declarations] g_thread_init(NULL); ^ In file included from /usr/include/glib-2.0/glib.h:107:0, from argument.h:26, from argument.c:16: /usr/include/glib-2.0/glib/deprecated/gthread.h:265:10: note: declared here void g_thread_init (gpointer vtable); ^ argument.c: In function ‘Argument_process’: argument.c:502:5: warning: ‘g_tree_traverse’ is deprecated [-Wdeprecated-declarations] g_tree_traverse(arg->option_registry, Argument_set_env_var_func, ^ In file included from /usr/include/glib-2.0/glib.h:88:0, from argument.h:26, from argument.c:16: /usr/include/glib-2.0/glib/gtree.h:88:10: note: declared here void g_tree_traverse (GTree *tree, ^ argument.c:559:5: warning: ‘g_tree_traverse’ is deprecated [-Wdeprecated-declarations] g_tree_traverse(arg->option_registry, ^ In file included from /usr/include/glib-2.0/glib.h:88:0, from argument.h:26, from argument.c:16: /usr/include/glib-2.0/glib/gtree.h:88:10: note: declared here void g_tree_traverse (GTree *tree, ^ gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o argument.test argument.test.o argument.o -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DCUSTOM_GUINT64_FORMAT="\"llu\"" -I../../src/struct -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o lineparse.test.o lineparse.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DCUSTOM_GUINT64_FORMAT="\"llu\"" -I../../src/struct -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o lineparse.o lineparse.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o lineparse.test lineparse.test.o lineparse.o -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DCUSTOM_GUINT64_FORMAT="\"llu\"" -I../../src/struct -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o compoundfile.test.o compoundfile.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DCUSTOM_GUINT64_FORMAT="\"llu\"" -I../../src/struct -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o compoundfile.o compoundfile.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o compoundfile.test compoundfile.test.o compoundfile.o -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DCUSTOM_GUINT64_FORMAT="\"llu\"" -I../../src/struct -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o socket.test.o socket.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DCUSTOM_GUINT64_FORMAT="\"llu\"" -I../../src/struct -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o socket.o socket.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o socket.test socket.test.o socket.o -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DCUSTOM_GUINT64_FORMAT="\"llu\"" -I../../src/struct -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o jobqueue.test.o jobqueue.test.c jobqueue.test.c: In function ‘main’: jobqueue.test.c:35:9: warning: ‘g_thread_init’ is deprecated [-Wdeprecated-declarations] g_thread_init(NULL); ^ In file included from /usr/include/glib-2.0/glib.h:107:0, from jobqueue.h:23, from jobqueue.test.c:17: /usr/include/glib-2.0/glib/deprecated/gthread.h:265:10: note: declared here void g_thread_init (gpointer vtable); ^ gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DCUSTOM_GUINT64_FORMAT="\"llu\"" -I../../src/struct -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o jobqueue.o jobqueue.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o jobqueue.test jobqueue.test.o jobqueue.o ../../src/struct/pqueue.o ../../src/struct/recyclebin.o -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DCUSTOM_GUINT64_FORMAT="\"llu\"" -I../../src/struct -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o threadref.test.o threadref.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DCUSTOM_GUINT64_FORMAT="\"llu\"" -I../../src/struct -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o threadref.o threadref.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o threadref.test threadref.test.o threadref.o -lpthread -lglib-2.0 make[3]: Leaving directory '/«PKGBUILDDIR»/src/general' Making all in sequence make[3]: Entering directory '/«PKGBUILDDIR»/src/sequence' gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/general -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o sequence.test.o sequence.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/general -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o sequence.o sequence.c sequence.c: In function ‘Sequence_destroy_annotation_tree’: sequence.c:97:5: warning: ‘g_tree_traverse’ is deprecated [-Wdeprecated-declarations] g_tree_traverse(tree, Sequence_destroy_annotation_data, ^ In file included from /usr/include/glib-2.0/glib.h:88:0, from sequence.h:24, from sequence.c:21: /usr/include/glib-2.0/glib/gtree.h:88:10: note: declared here void g_tree_traverse (GTree *tree, ^ gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/general -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o alphabet.o alphabet.c alphabet.c: In function ‘Alphabet_name_get_type’: alphabet.c:317:9: warning: ‘g_strcasecmp’ is deprecated [-Wdeprecated-declarations] if(!g_strcasecmp(name, dna_string[i])) ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from alphabet.h:24, from alphabet.c:19: /usr/include/glib-2.0/glib/gstrfuncs.h:200:23: note: declared here gint g_strcasecmp (const gchar *s1, ^ alphabet.c:320:9: warning: ‘g_strcasecmp’ is deprecated [-Wdeprecated-declarations] if(!g_strcasecmp(name, protein_string[i])) ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from alphabet.h:24, from alphabet.c:19: /usr/include/glib-2.0/glib/gstrfuncs.h:200:23: note: declared here gint g_strcasecmp (const gchar *s1, ^ alphabet.c:323:9: warning: ‘g_strcasecmp’ is deprecated [-Wdeprecated-declarations] if(!g_strcasecmp(name, unknown_string[i])) ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from alphabet.h:24, from alphabet.c:19: /usr/include/glib-2.0/glib/gstrfuncs.h:200:23: note: declared here gint g_strcasecmp (const gchar *s1, ^ gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/general -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o translate.o translate.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/general -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o splice.o splice.c splice.c: In function ‘SplicePredictor_parse_data’: splice.c:146:17: warning: ‘g_strcasecmp’ is deprecated [-Wdeprecated-declarations] if(!g_strcasecmp(word, "splice")) ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from splice.h:23, from splice.c:22: /usr/include/glib-2.0/glib/gstrfuncs.h:200:23: note: declared here gint g_strcasecmp (const gchar *s1, ^ splice.c: In function ‘SplicePredictor_add_5SS_data’: splice.c:195:5: warning: ‘g_strcasecmp’ is deprecated [-Wdeprecated-declarations] if((!path) || (!strlen(path)) || (!g_strcasecmp(path, "primate"))) ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from splice.h:23, from splice.c:22: /usr/include/glib-2.0/glib/gstrfuncs.h:200:23: note: declared here gint g_strcasecmp (const gchar *s1, ^ splice.c: In function ‘SplicePredictor_add_3SS_data’: splice.c:203:5: warning: ‘g_strcasecmp’ is deprecated [-Wdeprecated-declarations] if((!path) || (!strlen(path)) || (!g_strcasecmp(path, "primate"))) ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from splice.h:23, from splice.c:22: /usr/include/glib-2.0/glib/gstrfuncs.h:200:23: note: declared here gint g_strcasecmp (const gchar *s1, ^ gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o sequence.test sequence.test.o sequence.o alphabet.o translate.o splice.o ../../src/struct/matrix.o ../../src/struct/sparsecache.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/general -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o submat.test.o submat.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/general -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o submat.o submat.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o submat.test submat.test.o submat.o -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/general -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o translate.test.o translate.test.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o translate.test translate.test.o translate.o ../../src/general/argument.o -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/general -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o splice.test.o splice.test.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o splice.test splice.test.o splice.o ../../src/struct/matrix.o ../../src/struct/sparsecache.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/general -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o alphabet.test.o alphabet.test.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o alphabet.test alphabet.test.o alphabet.o ../../src/general/argument.o -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/general -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o codonsubmat.test.o codonsubmat.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/general -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o codonsubmat.o codonsubmat.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o codonsubmat.test codonsubmat.test.o codonsubmat.o ../../src/general/argument.o -lm -lglib-2.0 make[3]: Leaving directory '/«PKGBUILDDIR»/src/sequence' Making all in comparison make[3]: Entering directory '/«PKGBUILDDIR»/src/comparison' gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/struct -I../../src/general -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o wordhood.test.o wordhood.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/struct -I../../src/general -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o wordhood.o wordhood.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o wordhood.test wordhood.test.o wordhood.o ../../src/sequence/submat.o ../../src/sequence/codonsubmat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/struct -I../../src/general -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o hspset.test.o hspset.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/struct -I../../src/general -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o hspset.o hspset.c hspset.c: In function ‘HSP_Display_insert’: hspset.c:637:9: warning: ‘g_strdown’ is deprecated [-Wdeprecated-declarations] g_strdown(query_str); ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from hspset.h:26, from hspset.c:20: /usr/include/glib-2.0/glib/gstrfuncs.h:207:23: note: declared here gchar* g_strdown (gchar *string); ^ hspset.c:638:9: warning: ‘g_strdown’ is deprecated [-Wdeprecated-declarations] g_strdown(target_str); ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from hspset.h:26, from hspset.c:20: /usr/include/glib-2.0/glib/gstrfuncs.h:207:23: note: declared here gchar* g_strdown (gchar *string); ^ hspset.c:640:9: warning: ‘g_strup’ is deprecated [-Wdeprecated-declarations] g_strup(query_str); ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from hspset.h:26, from hspset.c:20: /usr/include/glib-2.0/glib/gstrfuncs.h:209:23: note: declared here gchar* g_strup (gchar *string); ^ hspset.c:641:9: warning: ‘g_strup’ is deprecated [-Wdeprecated-declarations] g_strup(target_str); ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from hspset.h:26, from hspset.c:20: /usr/include/glib-2.0/glib/gstrfuncs.h:209:23: note: declared here gchar* g_strup (gchar *string); ^ gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/struct -I../../src/general -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o match.o match.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o hspset.test hspset.test.o hspset.o match.o wordhood.o ../../src/sequence/submat.o ../../src/sequence/codonsubmat.o ../../src/struct/pqueue.o ../../src/struct/recyclebin.o ../../src/general/threadref.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/struct -I../../src/general -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o pcr.test.o pcr.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/struct -I../../src/general -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o pcr.o pcr.c pcr.c: In function ‘PCR_Match_allocate’: pcr.c:31:9: warning: ‘g_mem_chunk_alloc’ is deprecated [-Wdeprecated-declarations] pcr_match = g_chunk_new(PCR_Match, pcr->match_mem_chunk); ^ In file included from /usr/include/glib-2.0/glib.h:102:0, from pcr.h:23, from pcr.c:16: /usr/include/glib-2.0/glib/deprecated/gallocator.h:50:17: note: declared here gpointer g_mem_chunk_alloc (GMemChunk *mem_chunk); ^ pcr.c: In function ‘PCR_Probe_create’: pcr.c:59:5: warning: ‘g_mem_chunk_alloc’ is deprecated [-Wdeprecated-declarations] register PCR_Probe *pcr_probe = g_chunk_new(PCR_Probe, ^ In file included from /usr/include/glib-2.0/glib.h:102:0, from pcr.h:23, from pcr.c:16: /usr/include/glib-2.0/glib/deprecated/gallocator.h:50:17: note: declared here gpointer g_mem_chunk_alloc (GMemChunk *mem_chunk); ^ pcr.c: In function ‘PCR_Probe_destroy’: pcr.c:69:5: warning: ‘g_mem_chunk_free’ is deprecated [-Wdeprecated-declarations] g_mem_chunk_free(pcr->probe_mem_chunk, pcr_probe); ^ In file included from /usr/include/glib-2.0/glib.h:102:0, from pcr.h:23, from pcr.c:16: /usr/include/glib-2.0/glib/deprecated/gallocator.h:54:17: note: declared here void g_mem_chunk_free (GMemChunk *mem_chunk, ^ pcr.c: In function ‘PCR_Sensor_create’: pcr.c:155:5: warning: ‘g_mem_chunk_alloc’ is deprecated [-Wdeprecated-declarations] register PCR_Sensor *pcr_sensor = g_chunk_new(PCR_Sensor, ^ In file included from /usr/include/glib-2.0/glib.h:102:0, from pcr.h:23, from pcr.c:16: /usr/include/glib-2.0/glib/deprecated/gallocator.h:50:17: note: declared here gpointer g_mem_chunk_alloc (GMemChunk *mem_chunk); ^ pcr.c: In function ‘PCR_Sensor_destroy’: pcr.c:174:5: warning: ‘g_mem_chunk_free’ is deprecated [-Wdeprecated-declarations] g_mem_chunk_free(pcr->sensor_mem_chunk, pcr_sensor); ^ In file included from /usr/include/glib-2.0/glib.h:102:0, from pcr.h:23, from pcr.c:16: /usr/include/glib-2.0/glib/deprecated/gallocator.h:54:17: note: declared here void g_mem_chunk_free (GMemChunk *mem_chunk, ^ pcr.c: In function ‘PCR_Primer_create’: pcr.c:252:5: warning: ‘g_strup’ is deprecated [-Wdeprecated-declarations] g_strup(pcr_primer->forward); ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from pcr.h:23, from pcr.c:16: /usr/include/glib-2.0/glib/gstrfuncs.h:209:23: note: declared here gchar* g_strup (gchar *string); ^ pcr.c:253:5: warning: ‘g_strup’ is deprecated [-Wdeprecated-declarations] g_strup(pcr_primer->revcomp); ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from pcr.h:23, from pcr.c:16: /usr/include/glib-2.0/glib/gstrfuncs.h:209:23: note: declared here gchar* g_strup (gchar *string); ^ pcr.c: In function ‘PCR_create’: pcr.c:357:5: warning: ‘g_mem_chunk_new’ is deprecated [-Wdeprecated-declarations] pcr->sensor_mem_chunk = g_mem_chunk_new("PCR_Sensor", ^ In file included from /usr/include/glib-2.0/glib.h:102:0, from pcr.h:23, from pcr.c:16: /usr/include/glib-2.0/glib/deprecated/gallocator.h:43:17: note: declared here GMemChunk * g_mem_chunk_new (const gchar *name, ^ pcr.c:363:5: warning: ‘g_mem_chunk_new’ is deprecated [-Wdeprecated-declarations] pcr->probe_mem_chunk = g_mem_chunk_new("PCR_Probe", ^ In file included from /usr/include/glib-2.0/glib.h:102:0, from pcr.h:23, from pcr.c:16: /usr/include/glib-2.0/glib/deprecated/gallocator.h:43:17: note: declared here GMemChunk * g_mem_chunk_new (const gchar *name, ^ pcr.c:366:5: warning: ‘g_mem_chunk_new’ is deprecated [-Wdeprecated-declarations] pcr->match_mem_chunk = g_mem_chunk_new("PCR_Match", ^ In file included from /usr/include/glib-2.0/glib.h:102:0, from pcr.h:23, from pcr.c:16: /usr/include/glib-2.0/glib/deprecated/gallocator.h:43:17: note: declared here GMemChunk * g_mem_chunk_new (const gchar *name, ^ pcr.c: In function ‘PCR_destroy’: pcr.c:381:5: warning: ‘g_mem_chunk_destroy’ is deprecated [-Wdeprecated-declarations] g_mem_chunk_destroy(pcr->sensor_mem_chunk); ^ In file included from /usr/include/glib-2.0/glib.h:102:0, from pcr.h:23, from pcr.c:16: /usr/include/glib-2.0/glib/deprecated/gallocator.h:48:17: note: declared here void g_mem_chunk_destroy (GMemChunk *mem_chunk); ^ pcr.c:383:5: warning: ‘g_mem_chunk_destroy’ is deprecated [-Wdeprecated-declarations] g_mem_chunk_destroy(pcr->probe_mem_chunk); ^ In file included from /usr/include/glib-2.0/glib.h:102:0, from pcr.h:23, from pcr.c:16: /usr/include/glib-2.0/glib/deprecated/gallocator.h:48:17: note: declared here void g_mem_chunk_destroy (GMemChunk *mem_chunk); ^ pcr.c:384:5: warning: ‘g_mem_chunk_destroy’ is deprecated [-Wdeprecated-declarations] g_mem_chunk_destroy(pcr->match_mem_chunk); ^ In file included from /usr/include/glib-2.0/glib.h:102:0, from pcr.h:23, from pcr.c:16: /usr/include/glib-2.0/glib/deprecated/gallocator.h:48:17: note: declared here void g_mem_chunk_destroy (GMemChunk *mem_chunk); ^ gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o pcr.test pcr.test.o pcr.o wordhood.o ../../src/sequence/submat.o ../../src/sequence/codonsubmat.o ../../src/struct/fsm.o ../../src/struct/slist.o ../../src/struct/recyclebin.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/struct -I../../src/general -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o comparison.test.o comparison.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/struct -I../../src/general -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o comparison.o comparison.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o comparison.test comparison.test.o comparison.o hspset.o match.o wordhood.o ../../src/sequence/submat.o ../../src/sequence/codonsubmat.o ../../src/struct/recyclebin.o ../../src/struct/pqueue.o ../../src/general/threadref.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/struct -I../../src/general -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o match.test.o match.test.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o match.test match.test.o match.o ../../src/sequence/submat.o ../../src/sequence/codonsubmat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/struct -I../../src/general -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o seeder.test.o seeder.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/struct -I../../src/general -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o seeder.o seeder.c seeder.c: In function ‘Seeder_decide_fsm_type’: seeder.c:268:5: warning: ‘g_strcasecmp’ is deprecated [-Wdeprecated-declarations] if(!g_strcasecmp(force_fsm, "none")) ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from seeder.h:23, from seeder.c:16: /usr/include/glib-2.0/glib/gstrfuncs.h:200:23: note: declared here gint g_strcasecmp (const gchar *s1, ^ seeder.c:273:5: warning: ‘g_strcasecmp’ is deprecated [-Wdeprecated-declarations] if(!g_strcasecmp(force_fsm, "normal")) ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from seeder.h:23, from seeder.c:16: /usr/include/glib-2.0/glib/gstrfuncs.h:200:23: note: declared here gint g_strcasecmp (const gchar *s1, ^ seeder.c:275:5: warning: ‘g_strcasecmp’ is deprecated [-Wdeprecated-declarations] if(!g_strcasecmp(force_fsm, "compact")) ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from seeder.h:23, from seeder.c:16: /usr/include/glib-2.0/glib/gstrfuncs.h:200:23: note: declared here gint g_strcasecmp (const gchar *s1, ^ gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o seeder.test seeder.test.o seeder.o wordhood.o hspset.o match.o comparison.o ../../src/sequence/submat.o ../../src/sequence/codonsubmat.o ../../src/struct/recyclebin.o ../../src/struct/fsm.o ../../src/struct/vfsm.o ../../src/struct/pqueue.o ../../src/general/threadref.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 make[3]: Leaving directory '/«PKGBUILDDIR»/src/comparison' Making all in database make[3]: Entering directory '/«PKGBUILDDIR»/src/database' gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/struct -I../../src/general -I../../src/comparison -DCUSTOM_GUINT64_FORMAT="\"llu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o fastadb.test.o fastadb.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/struct -I../../src/general -I../../src/comparison -DCUSTOM_GUINT64_FORMAT="\"llu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o fastadb.o fastadb.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o fastadb.test fastadb.test.o fastadb.o ../../src/general/compoundfile.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/struct -I../../src/general -I../../src/comparison -DCUSTOM_GUINT64_FORMAT="\"llu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o fastapipe.test.o fastapipe.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/struct -I../../src/general -I../../src/comparison -DCUSTOM_GUINT64_FORMAT="\"llu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o fastapipe.o fastapipe.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o fastapipe.test fastapipe.test.o fastapipe.o fastadb.o ../../src/general/compoundfile.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/struct -I../../src/general -I../../src/comparison -DCUSTOM_GUINT64_FORMAT="\"llu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o dataset.test.o dataset.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/struct -I../../src/general -I../../src/comparison -DCUSTOM_GUINT64_FORMAT="\"llu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o dataset.o dataset.c dataset.c: In function ‘Dataset_info’: dataset.c:305:13: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 6 has type ‘guint64 {aka long unsigned int}’ [-Wformat=] g_print("Sequence Dataset:\n" ^ dataset.c:305:13: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 7 has type ‘guint64 {aka long unsigned int}’ [-Wformat=] gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o dataset.test dataset.test.o dataset.o fastadb.o ../../src/general/compoundfile.o ../../src/struct/bitarray.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/struct -I../../src/general -I../../src/comparison -DCUSTOM_GUINT64_FORMAT="\"llu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o index.test.o index.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/struct -I../../src/general -I../../src/comparison -DCUSTOM_GUINT64_FORMAT="\"llu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o index.o index.c In file included from /usr/include/glib-2.0/glib.h:62:0, from index.h:24, from index.c:21: index.c: In function ‘Index_desaturate’: index.c:377:15: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘gint64 {aka long int}’ [-Wformat=] g_message("Removed [%" CUSTOM_GUINT64_FORMAT ^ /usr/include/glib-2.0/glib/gmessages.h:158:32: note: in definition of macro ‘g_message’ __VA_ARGS__) ^ index.c:377:15: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘gint64 {aka long int}’ [-Wformat=] g_message("Removed [%" CUSTOM_GUINT64_FORMAT ^ /usr/include/glib-2.0/glib/gmessages.h:158:32: note: in definition of macro ‘g_message’ __VA_ARGS__) ^ index.c: In function ‘Index_open’: index.c:943:5: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(index->dataset_path, sizeof(gchar), ^ gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o index.test index.test.o index.o fastadb.o dataset.o ../../src/general/compoundfile.o ../../src/general/threadref.o ../../src/struct/bitarray.o ../../src/struct/vfsm.o ../../src/struct/pqueue.o ../../src/struct/recyclebin.o ../../src/struct/rangetree.o ../../src/struct/splaytree.o ../../src/struct/noitree.o ../../src/comparison/wordhood.o ../../src/comparison/hspset.o ../../src/comparison/match.o ../../src/sequence/submat.o ../../src/sequence/codonsubmat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 make[3]: Leaving directory '/«PKGBUILDDIR»/src/database' Making all in c4 make[3]: Entering directory '/«PKGBUILDDIR»/src/c4' gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o region.test.o region.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o region.o region.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o region.test region.test.o region.o -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o c4.test.o c4.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o c4.o c4.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o c4.test c4.test.o c4.o region.o ../../src/struct/matrix.o ../../src/general/threadref.o -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o alignment.test.o alignment.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o alignment.o alignment.c alignment.c: In function ‘AlignmentView_add_SPLICE_SITE’: alignment.c:660:9: warning: ‘g_strdown’ is deprecated [-Wdeprecated-declarations] g_strdown(qy_seq_string); ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from ../../src/comparison/match.h:23, from alignment.c:20: /usr/include/glib-2.0/glib/gstrfuncs.h:207:23: note: declared here gchar* g_strdown (gchar *string); ^ alignment.c:667:9: warning: ‘g_strdown’ is deprecated [-Wdeprecated-declarations] g_strdown(tg_seq_string); ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from ../../src/comparison/match.h:23, from alignment.c:20: /usr/include/glib-2.0/glib/gstrfuncs.h:207:23: note: declared here gchar* g_strdown (gchar *string); ^ alignment.c:677:13: warning: ‘g_strdown’ is deprecated [-Wdeprecated-declarations] g_strdown(qy_seq_string); ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from ../../src/comparison/match.h:23, from alignment.c:20: /usr/include/glib-2.0/glib/gstrfuncs.h:207:23: note: declared here gchar* g_strdown (gchar *string); ^ alignment.c:690:9: warning: ‘g_strdown’ is deprecated [-Wdeprecated-declarations] g_strdown(tg_seq_string); ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from ../../src/comparison/match.h:23, from alignment.c:20: /usr/include/glib-2.0/glib/gstrfuncs.h:207:23: note: declared here gchar* g_strdown (gchar *string); ^ alignment.c: In function ‘AlignmentView_add_SPLIT_CODON’: alignment.c:987:5: warning: ‘g_strup’ is deprecated [-Wdeprecated-declarations] g_strup(qy_codon); ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from ../../src/comparison/match.h:23, from alignment.c:20: /usr/include/glib-2.0/glib/gstrfuncs.h:209:23: note: declared here gchar* g_strup (gchar *string); ^ alignment.c:988:5: warning: ‘g_strup’ is deprecated [-Wdeprecated-declarations] g_strup(tg_codon); ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from ../../src/comparison/match.h:23, from alignment.c:20: /usr/include/glib-2.0/glib/gstrfuncs.h:209:23: note: declared here gchar* g_strup (gchar *string); ^ gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o alignment.test alignment.test.o alignment.o c4.o region.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/general/threadref.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o codegen.test.o codegen.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o codegen.o codegen.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o codegen.test codegen.test.o codegen.o ../../src/general/argument.o -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o optimal.test.o optimal.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o optimal.o optimal.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o layout.o layout.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o viterbi.o viterbi.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o subopt.o subopt.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o cgutil.o cgutil.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o optimal.test optimal.test.o optimal.o c4.o alignment.o codegen.o region.o layout.o viterbi.o subopt.o cgutil.o ../../src/struct/slist.o ../../src/struct/recyclebin.o ../../src/struct/rangetree.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/general/threadref.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o layout.test.o layout.test.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o layout.test layout.test.o layout.o ../../src/struct/matrix.o -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o viterbi.test.o viterbi.test.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o viterbi.test viterbi.test.o viterbi.o c4.o region.o alignment.o codegen.o layout.o subopt.o cgutil.o ../../src/struct/slist.o ../../src/struct/recyclebin.o ../../src/struct/rangetree.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/general/threadref.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o opair.test.o opair.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o opair.o opair.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o opair.test opair.test.o opair.o optimal.o c4.o alignment.o codegen.o region.o layout.o viterbi.o subopt.o cgutil.o ../../src/struct/slist.o ../../src/struct/recyclebin.o ../../src/struct/rangetree.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/general/threadref.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o subopt.test.o subopt.test.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o subopt.test subopt.test.o subopt.o region.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o cgutil.test.o cgutil.test.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o cgutil.test cgutil.test.o cgutil.o codegen.o c4.o region.o ../../src/general/argument.o ../../src/struct/matrix.o ../../src/general/threadref.o -lglib-2.0 make[3]: Leaving directory '/«PKGBUILDDIR»/src/c4' Making all in bsdp make[3]: Entering directory '/«PKGBUILDDIR»/src/bsdp' gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -I../../src/c4 -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o heuristic.test.o heuristic.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -I../../src/c4 -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o heuristic.o heuristic.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o heuristic.test heuristic.test.o heuristic.o ../../src/struct/slist.o ../../src/struct/recyclebin.o ../../src/struct/rangetree.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/c4/c4.o ../../src/c4/alignment.o ../../src/c4/optimal.o ../../src/c4/codegen.o ../../src/c4/region.o ../../src/c4/layout.o ../../src/c4/viterbi.o ../../src/c4/subopt.o ../../src/c4/cgutil.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o ../../src/general/threadref.o -lm -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -I../../src/c4 -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o bsdp.test.o bsdp.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -I../../src/c4 -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o bsdp.o bsdp.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o bsdp.test bsdp.test.o bsdp.o ../../src/general/argument.o ../../src/struct/pqueue.o ../../src/struct/recyclebin.o -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -I../../src/c4 -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o hpair.test.o hpair.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -I../../src/c4 -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o hpair.o hpair.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -I../../src/c4 -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o sar.o sar.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o hpair.test hpair.test.o hpair.o heuristic.o bsdp.o sar.o ../../src/struct/slist.o ../../src/struct/pqueue.o ../../src/struct/recyclebin.o ../../src/struct/rangetree.o ../../src/comparison/hspset.o ../../src/comparison/wordhood.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/c4/c4.o ../../src/c4/alignment.o ../../src/c4/optimal.o ../../src/c4/codegen.o ../../src/c4/region.o ../../src/c4/layout.o ../../src/c4/viterbi.o ../../src/c4/subopt.o ../../src/c4/cgutil.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o ../../src/general/threadref.o -lm -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -I../../src/c4 -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o sar.test.o sar.test.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o sar.test sar.test.o sar.o heuristic.o ../../src/struct/slist.o ../../src/struct/recyclebin.o ../../src/struct/rangetree.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/c4/c4.o ../../src/c4/alignment.o ../../src/c4/optimal.o ../../src/c4/codegen.o ../../src/c4/region.o ../../src/c4/layout.o ../../src/c4/viterbi.o ../../src/c4/subopt.o ../../src/c4/cgutil.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o ../../src/general/threadref.o -lm -lglib-2.0 make[3]: Leaving directory '/«PKGBUILDDIR»/src/bsdp' Making all in sdp make[3]: Entering directory '/«PKGBUILDDIR»/src/sdp' gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -I../../src/c4 -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o sdp.test.o sdp.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -I../../src/c4 -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o sdp.o sdp.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -I../../src/c4 -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o boundary.o boundary.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -I../../src/c4 -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o scheduler.o scheduler.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -I../../src/c4 -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o lookahead.o lookahead.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -I../../src/c4 -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o straceback.o straceback.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o sdp.test sdp.test.o sdp.o boundary.o scheduler.o lookahead.o straceback.o ../../src/struct/pqueue.o ../../src/struct/recyclebin.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/comparison/hspset.o ../../src/comparison/comparison.o ../../src/comparison/wordhood.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/c4/c4.o ../../src/c4/alignment.o ../../src/c4/optimal.o ../../src/c4/codegen.o ../../src/c4/region.o ../../src/c4/layout.o ../../src/c4/viterbi.o ../../src/c4/subopt.o ../../src/c4/cgutil.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o ../../src/general/threadref.o -lm -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -I../../src/c4 -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o lookahead.test.o lookahead.test.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o lookahead.test lookahead.test.o lookahead.o -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -I../../src/c4 -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o boundary.test.o boundary.test.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o boundary.test boundary.test.o boundary.o ../../src/general/argument.o ../../src/c4/region.o -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -I../../src/c4 -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o scheduler.test.o scheduler.test.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o scheduler.test scheduler.test.o scheduler.o lookahead.o boundary.o straceback.o ../../src/struct/recyclebin.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/c4/c4.o ../../src/c4/alignment.o ../../src/c4/optimal.o ../../src/c4/codegen.o ../../src/c4/region.o ../../src/c4/layout.o ../../src/c4/viterbi.o ../../src/c4/subopt.o ../../src/c4/cgutil.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o ../../src/general/threadref.o -lm -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -I../../src/c4 -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o straceback.test.o straceback.test.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o straceback.test straceback.test.o straceback.o ../../src/struct/recyclebin.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/c4/c4.o ../../src/c4/alignment.o ../../src/c4/optimal.o ../../src/c4/codegen.o ../../src/c4/region.o ../../src/c4/layout.o ../../src/c4/viterbi.o ../../src/c4/subopt.o ../../src/c4/cgutil.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o ../../src/general/threadref.o -lm -lglib-2.0 make[3]: Leaving directory '/«PKGBUILDDIR»/src/sdp' Making all in model make[3]: Entering directory '/«PKGBUILDDIR»/src/model' gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o edit_distance.test.o edit_distance.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o edit_distance.o edit_distance.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o edit_distance.test edit_distance.test.o edit_distance.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o ../../src/c4/optimal.o ../../src/c4/viterbi.o ../../src/c4/layout.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/alignment.o ../../src/c4/region.o ../../src/c4/c4.o ../../src/c4/subopt.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o ../../src/general/threadref.o -lm -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o affine.test.o affine.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o affine.o affine.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o ungapped.o ungapped.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o affine.test affine.test.o affine.o ungapped.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o ../../src/c4/optimal.o ../../src/c4/viterbi.o ../../src/c4/layout.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/alignment.o ../../src/c4/region.o ../../src/c4/c4.o ../../src/c4/subopt.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o ../../src/general/threadref.o -lm -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o protein2dna.test.o protein2dna.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o protein2dna.o protein2dna.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o frameshift.o frameshift.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o protein2dna.test protein2dna.test.o protein2dna.o affine.o ungapped.o frameshift.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o ../../src/c4/optimal.o ../../src/c4/viterbi.o ../../src/c4/layout.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/alignment.o ../../src/c4/region.o ../../src/c4/c4.o ../../src/c4/subopt.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o ../../src/general/threadref.o -lm -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o ner.test.o ner.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o ner.o ner.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o ner.test ner.test.o ner.o affine.o ungapped.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o ../../src/c4/optimal.o ../../src/c4/viterbi.o ../../src/c4/layout.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/alignment.o ../../src/c4/region.o ../../src/c4/c4.o ../../src/c4/subopt.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o ../../src/general/threadref.o -lm -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o est2genome.test.o est2genome.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o est2genome.o est2genome.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o intron.o intron.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o est2genome.test est2genome.test.o est2genome.o affine.o ungapped.o intron.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o ../../src/c4/optimal.o ../../src/c4/viterbi.o ../../src/c4/layout.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/alignment.o ../../src/c4/region.o ../../src/c4/c4.o ../../src/c4/subopt.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o ../../src/general/threadref.o -lm -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o ungapped.test.o ungapped.test.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o ungapped.test ungapped.test.o ungapped.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o ../../src/c4/optimal.o ../../src/c4/viterbi.o ../../src/c4/layout.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/alignment.o ../../src/c4/region.o ../../src/c4/c4.o ../../src/c4/subopt.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o ../../src/general/threadref.o -lm -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o intron.test.o intron.test.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o intron.test intron.test.o intron.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o ../../src/c4/optimal.o ../../src/c4/viterbi.o ../../src/c4/layout.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/alignment.o ../../src/c4/region.o ../../src/c4/c4.o ../../src/c4/subopt.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o ../../src/general/threadref.o -lm -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o protein2genome.test.o protein2genome.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o protein2genome.o protein2genome.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o phase.o phase.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o protein2genome.test protein2genome.test.o protein2genome.o protein2dna.o ungapped.o intron.o affine.o frameshift.o phase.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o ../../src/c4/optimal.o ../../src/c4/viterbi.o ../../src/c4/layout.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/alignment.o ../../src/c4/region.o ../../src/c4/c4.o ../../src/c4/subopt.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o ../../src/general/threadref.o -lm -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o coding2coding.test.o coding2coding.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o coding2coding.o coding2coding.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o coding2coding.test coding2coding.test.o coding2coding.o affine.o ungapped.o frameshift.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o ../../src/c4/optimal.o ../../src/c4/viterbi.o ../../src/c4/layout.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/alignment.o ../../src/c4/region.o ../../src/c4/c4.o ../../src/c4/subopt.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o ../../src/general/threadref.o -lm -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o frameshift.test.o frameshift.test.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o frameshift.test frameshift.test.o frameshift.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o ../../src/c4/optimal.o ../../src/c4/viterbi.o ../../src/c4/layout.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/alignment.o ../../src/c4/region.o ../../src/c4/c4.o ../../src/c4/subopt.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o ../../src/general/threadref.o -lm -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o coding2genome.test.o coding2genome.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o coding2genome.o coding2genome.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o coding2genome.test coding2genome.test.o coding2genome.o coding2coding.o affine.o ungapped.o frameshift.o intron.o phase.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o ../../src/c4/optimal.o ../../src/c4/viterbi.o ../../src/c4/layout.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/alignment.o ../../src/c4/region.o ../../src/c4/c4.o ../../src/c4/subopt.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o ../../src/general/threadref.o -lm -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o cdna2genome.test.o cdna2genome.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o cdna2genome.o cdna2genome.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o cdna2genome.test cdna2genome.test.o cdna2genome.o affine.o ungapped.o frameshift.o intron.o phase.o coding2coding.o coding2genome.o est2genome.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o ../../src/c4/optimal.o ../../src/c4/viterbi.o ../../src/c4/layout.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/alignment.o ../../src/c4/region.o ../../src/c4/c4.o ../../src/c4/subopt.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o ../../src/general/threadref.o -lm -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o genome2genome.test.o genome2genome.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o genome2genome.o genome2genome.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o genome2genome.test genome2genome.test.o genome2genome.o coding2coding.o affine.o ungapped.o frameshift.o intron.o phase.o coding2genome.o cdna2genome.o est2genome.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o ../../src/c4/optimal.o ../../src/c4/viterbi.o ../../src/c4/layout.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/alignment.o ../../src/c4/region.o ../../src/c4/c4.o ../../src/c4/subopt.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o ../../src/general/threadref.o -lm -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o phase.test.o phase.test.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o phase.test phase.test.o phase.o intron.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o ../../src/c4/optimal.o ../../src/c4/viterbi.o ../../src/c4/layout.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/alignment.o ../../src/c4/region.o ../../src/c4/c4.o ../../src/c4/subopt.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o ../../src/general/threadref.o -lm -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o modeltype.test.o modeltype.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o modeltype.o modeltype.c modeltype.c: In function ‘Model_Type_from_string’: modeltype.c:121:9: warning: ‘g_strcasecmp’ is deprecated [-Wdeprecated-declarations] if(!g_strcasecmp(name[i], str)) ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from ../../src/c4/c4.h:23, from modeltype.h:23, from modeltype.c:16: /usr/include/glib-2.0/glib/gstrfuncs.h:200:23: note: declared here gint g_strcasecmp (const gchar *s1, ^ modeltype.c:124:9: warning: ‘g_strcasecmp’ is deprecated [-Wdeprecated-declarations] if(!g_strcasecmp(short_name[i], str)) ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from ../../src/c4/c4.h:23, from modeltype.h:23, from modeltype.c:16: /usr/include/glib-2.0/glib/gstrfuncs.h:200:23: note: declared here gint g_strcasecmp (const gchar *s1, ^ gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o modeltype.test modeltype.test.o modeltype.o ungapped.o affine.o est2genome.o ner.o protein2dna.o protein2genome.o coding2coding.o coding2genome.o genome2genome.o cdna2genome.o frameshift.o phase.o intron.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o ../../src/c4/optimal.o ../../src/c4/viterbi.o ../../src/c4/layout.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/alignment.o ../../src/c4/region.o ../../src/c4/c4.o ../../src/c4/subopt.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o ../../src/general/threadref.o -lm -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o bootstrapper.o bootstrapper.c bootstrapper.c: In function ‘Argument_main’: bootstrapper.c:421:5: warning: ‘g_strcasecmp’ is deprecated [-Wdeprecated-declarations] if((!models) || (!g_strcasecmp(models, "all"))) ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from ../../src/c4/c4.h:23, from ungapped.h:23, from bootstrapper.c:20: /usr/include/glib-2.0/glib/gstrfuncs.h:200:23: note: declared here gint g_strcasecmp (const gchar *s1, ^ gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o bootstrapper bootstrapper.o modeltype.o ungapped.o affine.o est2genome.o ner.o protein2dna.o protein2genome.o coding2coding.o coding2genome.o genome2genome.o cdna2genome.o frameshift.o intron.o phase.o ../../src/struct/pqueue.o ../../src/comparison/comparison.o ../../src/comparison/hspset.o ../../src/comparison/wordhood.o ../../src/bsdp/heuristic.o ../../src/sdp/sdp.o ../../src/sdp/scheduler.o ../../src/sdp/straceback.o ../../src/sdp/lookahead.o ../../src/sdp/boundary.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o ../../src/c4/optimal.o ../../src/c4/viterbi.o ../../src/c4/layout.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/alignment.o ../../src/c4/region.o ../../src/c4/c4.o ../../src/c4/subopt.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o ../../src/general/threadref.o -lm -lglib-2.0 make[3]: Leaving directory '/«PKGBUILDDIR»/src/model' Making all in hub make[3]: Entering directory '/«PKGBUILDDIR»/src/hub' gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/comparison -I../../src/struct -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/model -I../../src/general -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o gam.test.o gam.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/comparison -I../../src/struct -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/model -I../../src/general -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o gam.o gam.c gam.c: In function ‘GAM_Refinement_from_string’: gam.c:68:9: warning: ‘g_strcasecmp’ is deprecated [-Wdeprecated-declarations] if(!g_strcasecmp(name[i], str)) ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from gam.h:23, from gam.c:21: /usr/include/glib-2.0/glib/gstrfuncs.h:200:23: note: declared here gint g_strcasecmp (const gchar *s1, ^ gam.c: In function ‘GAM_bestn_tree_destroy’: gam.c:526:5: warning: ‘g_tree_traverse’ is deprecated [-Wdeprecated-declarations] g_tree_traverse(bestn_tree, GAM_tree_collect_values, ^ In file included from /usr/include/glib-2.0/glib.h:88:0, from gam.h:23, from gam.c:21: /usr/include/glib-2.0/glib/gtree.h:88:10: note: declared here void g_tree_traverse (GTree *tree, ^ gam.c: In function ‘GAM_percent_threshold_tree_destroy’: gam.c:539:5: warning: ‘g_tree_traverse’ is deprecated [-Wdeprecated-declarations] g_tree_traverse(percent_threshold_tree, GAM_tree_collect_values, ^ In file included from /usr/include/glib-2.0/glib.h:88:0, from gam.h:23, from gam.c:21: /usr/include/glib-2.0/glib/gtree.h:88:10: note: declared here void g_tree_traverse (GTree *tree, ^ gam.c: In function ‘GAM_report’: gam.c:589:9: warning: ‘g_tree_traverse’ is deprecated [-Wdeprecated-declarations] g_tree_traverse(gam->bestn_tree, GAM_bestn_tree_report_traverse, ^ In file included from /usr/include/glib-2.0/glib.h:88:0, from gam.h:23, from gam.c:21: /usr/include/glib-2.0/glib/gtree.h:88:10: note: declared here void g_tree_traverse (GTree *tree, ^ gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o gam.test gam.test.o gam.o ../../src/comparison/hspset.o ../../src/comparison/comparison.o ../../src/comparison/wordhood.o ../../src/struct/sparsecache.o ../../src/general/compoundfile.o ../../src/general/threadref.o ../../src/c4/c4.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/opair.o ../../src/c4/alignment.o ../../src/c4/optimal.o ../../src/c4/viterbi.o ../../src/c4/layout.o ../../src/c4/region.o ../../src/c4/subopt.o ../../src/bsdp/bsdp.o ../../src/bsdp/sar.o ../../src/bsdp/heuristic.o ../../src/bsdp/hpair.o ../../src/sdp/boundary.o ../../src/sdp/sdp.o ../../src/sdp/scheduler.o ../../src/sdp/straceback.o ../../src/sdp/lookahead.o ../../src/struct/matrix.o ../../src/struct/slist.o ../../src/struct/pqueue.o ../../src/struct/recyclebin.o ../../src/struct/rangetree.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/translate.o ../../src/sequence/splice.o ../../src/model/affine.o ../../src/model/est2genome.o ../../src/model/ner.o ../../src/model/protein2dna.o ../../src/model/protein2genome.o ../../src/model/coding2coding.o ../../src/model/coding2genome.o ../../src/model/cdna2genome.o ../../src/model/genome2genome.o ../../src/model/ungapped.o ../../src/model/intron.o ../../src/model/frameshift.o ../../src/model/phase.o ../../src/model/modeltype.o ../../src/general/argument.o ../../src/general/lineparse.o ../../src/general/jobqueue.o ../../src/comparison/match.o ../../src/sequence/submat.o ../../src/sequence/codonsubmat.o -lm -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/comparison -I../../src/struct -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/model -I../../src/general -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o analysis.test.o analysis.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/comparison -I../../src/struct -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/model -I../../src/general -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o analysis.o analysis.c analysis.c: In function ‘Analysis_decide_scan_query’: analysis.c:329:5: warning: ‘g_strcasecmp’ is deprecated [-Wdeprecated-declarations] if(!g_strcasecmp(force_scan, "none")){ ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from analysis.h:23, from analysis.c:16: /usr/include/glib-2.0/glib/gstrfuncs.h:200:23: note: declared here gint g_strcasecmp (const gchar *s1, ^ analysis.c:336:5: warning: ‘g_strcasecmp’ is deprecated [-Wdeprecated-declarations] } else if((!g_strcasecmp(force_scan, "query")) ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from analysis.h:23, from analysis.c:16: /usr/include/glib-2.0/glib/gstrfuncs.h:200:23: note: declared here gint g_strcasecmp (const gchar *s1, ^ analysis.c:337:12: warning: ‘g_strcasecmp’ is deprecated [-Wdeprecated-declarations] || (!g_strcasecmp(force_scan, "q"))){ ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from analysis.h:23, from analysis.c:16: /usr/include/glib-2.0/glib/gstrfuncs.h:200:23: note: declared here gint g_strcasecmp (const gchar *s1, ^ analysis.c:339:5: warning: ‘g_strcasecmp’ is deprecated [-Wdeprecated-declarations] } else if((!g_strcasecmp(force_scan, "target")) ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from analysis.h:23, from analysis.c:16: /usr/include/glib-2.0/glib/gstrfuncs.h:200:23: note: declared here gint g_strcasecmp (const gchar *s1, ^ analysis.c:340:12: warning: ‘g_strcasecmp’ is deprecated [-Wdeprecated-declarations] || (!g_strcasecmp(force_scan, "t"))){ ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from analysis.h:23, from analysis.c:16: /usr/include/glib-2.0/glib/gstrfuncs.h:200:23: note: declared here gint g_strcasecmp (const gchar *s1, ^ gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/comparison -I../../src/struct -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/model -I../../src/general -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o bsam.o bsam.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o analysis.test analysis.test.o analysis.o gam.o bsam.o ../../src/comparison/hspset.o ../../src/comparison/wordhood.o ../../src/comparison/seeder.o ../../src/comparison/comparison.o ../../src/database/fastapipe.o ../../src/database/fastadb.o ../../src/struct/dejavu.o ../../src/struct/fsm.o ../../src/struct/vfsm.o ../../src/struct/sparsecache.o ../../src/general/compoundfile.o ../../src/general/socket.o ../../src/general/threadref.o ../../src/c4/c4.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/opair.o ../../src/c4/alignment.o ../../src/c4/optimal.o ../../src/c4/viterbi.o ../../src/c4/layout.o ../../src/c4/region.o ../../src/c4/subopt.o ../../src/bsdp/bsdp.o ../../src/bsdp/sar.o ../../src/bsdp/heuristic.o ../../src/bsdp/hpair.o ../../src/sdp/boundary.o ../../src/sdp/sdp.o ../../src/sdp/scheduler.o ../../src/sdp/straceback.o ../../src/sdp/lookahead.o ../../src/struct/matrix.o ../../src/struct/slist.o ../../src/struct/pqueue.o ../../src/struct/recyclebin.o ../../src/struct/rangetree.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/translate.o ../../src/sequence/splice.o ../../src/model/affine.o ../../src/model/est2genome.o ../../src/model/ner.o ../../src/model/protein2dna.o ../../src/model/protein2genome.o ../../src/model/coding2coding.o ../../src/model/coding2genome.o ../../src/model/cdna2genome.o ../../src/model/genome2genome.o ../../src/model/ungapped.o ../../src/model/intron.o ../../src/model/frameshift.o ../../src/model/phase.o ../../src/model/modeltype.o ../../src/general/argument.o ../../src/general/lineparse.o ../../src/general/jobqueue.o ../../src/comparison/match.o ../../src/sequence/submat.o ../../src/sequence/codonsubmat.o -lm -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/comparison -I../../src/struct -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/model -I../../src/general -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o bsam.test.o bsam.test.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o bsam.test bsam.test.o bsam.o ../../src/general/argument.o ../../src/general/lineparse.o ../../src/general/threadref.o ../../src/comparison/hspset.o ../../src/comparison/comparison.o ../../src/comparison/match.o ../../src/comparison/wordhood.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/translate.o ../../src/sequence/submat.o ../../src/sequence/codonsubmat.o ../../src/sequence/splice.o ../../src/struct/dejavu.o ../../src/struct/pqueue.o ../../src/struct/sparsecache.o ../../src/struct/recyclebin.o ../../src/struct/matrix.o -lm -lglib-2.0 make[3]: Leaving directory '/«PKGBUILDDIR»/src/hub' Making all in program make[3]: Entering directory '/«PKGBUILDDIR»/src/program' ../../src/model/bootstrapper --compiled no ** Message: Starting building bootstrapping components ** Message: Processing model [u] ** Message: Bootstrapper processing model [ungapped:dna2dna] ** Message: Process optimal [optimal:ungapped:dna2dna] ** (process:27256): WARNING **: Creating codegen directory [/«PKGBUILDDIR»/codegen] ** (process:27256): WARNING **: Creating codegen directory [/«PKGBUILDDIR»/codegen] ** (process:27256): WARNING **: Creating codegen directory [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu] ** (process:27256): WARNING **: Creating codegen directory [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_path.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_region.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_region.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_checkpoint.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_checkpoint.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_path_32_continuation.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_path_32_continuation.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_score.o] to archive ar -cSq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_score.o ** Message: Adding function [optimal_58_ungapped_58_dna2dna_32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_path.o ** Message: Adding function [optimal_58_ungapped_58_dna2dna_32_find_32_path] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_region.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_region.o ** Message: Adding function [optimal_58_ungapped_58_dna2dna_32_find_32_region] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_checkpoint.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_checkpoint.o ** Message: Adding function [optimal_58_ungapped_58_dna2dna_32_find_32_checkpoint] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_path_32_continuation.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_path_32_continuation.o ** Message: Adding function [optimal_58_ungapped_58_dna2dna_32_find_32_path_32_continuation] ** Message: Bootstrapper processing model [ungapped:protein2protein] ** Message: Process optimal [optimal:ungapped:protein2protein] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_path.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_region.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_region.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_checkpoint.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_checkpoint.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_path_32_continuation.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_path_32_continuation.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_score.o ** Message: Adding function [optimal_58_ungapped_58_protein2protein_32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_path.o ** Message: Adding function [optimal_58_ungapped_58_protein2protein_32_find_32_path] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_region.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_region.o ** Message: Adding function [optimal_58_ungapped_58_protein2protein_32_find_32_region] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_checkpoint.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_checkpoint.o ** Message: Adding function [optimal_58_ungapped_58_protein2protein_32_find_32_checkpoint] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_path_32_continuation.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_path_32_continuation.o ** Message: Adding function [optimal_58_ungapped_58_protein2protein_32_find_32_path_32_continuation] ** Message: Bootstrapper processing model [ungapped:dna2protein] ** Message: Process optimal [optimal:ungapped:dna2protein] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_path.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_region.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_region.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_checkpoint.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_checkpoint.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_path_32_continuation.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_path_32_continuation.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_score.o ** Message: Adding function [optimal_58_ungapped_58_dna2protein_32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_path.o ** Message: Adding function [optimal_58_ungapped_58_dna2protein_32_find_32_path] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_region.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_region.o ** Message: Adding function [optimal_58_ungapped_58_dna2protein_32_find_32_region] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_checkpoint.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_checkpoint.o ** Message: Adding function [optimal_58_ungapped_58_dna2protein_32_find_32_checkpoint] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_path_32_continuation.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_path_32_continuation.o ** Message: Adding function [optimal_58_ungapped_58_dna2protein_32_find_32_path_32_continuation] ** Message: Bootstrapper processing model [ungapped:protein2dna] ** Message: Process optimal [optimal:ungapped:protein2dna] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_path.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_region.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_region.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_checkpoint.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_checkpoint.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_path_32_continuation.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_path_32_continuation.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_score.o ** Message: Adding function [optimal_58_ungapped_58_protein2dna_32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_path.o ** Message: Adding function [optimal_58_ungapped_58_protein2dna_32_find_32_path] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_region.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_region.o ** Message: Adding function [optimal_58_ungapped_58_protein2dna_32_find_32_region] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_checkpoint.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_checkpoint.o ** Message: Adding function [optimal_58_ungapped_58_protein2dna_32_find_32_checkpoint] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_path_32_continuation.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_path_32_continuation.o ** Message: Adding function [optimal_58_ungapped_58_protein2dna_32_find_32_path_32_continuation] ** Message: Processing model [u:t] ** Message: Bootstrapper processing model [ungapped:codon] ** Message: Process optimal [optimal:ungapped:codon] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_path.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_region.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_region.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_checkpoint.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_checkpoint.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_path_32_continuation.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_path_32_continuation.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_score.o ** Message: Adding function [optimal_58_ungapped_58_codon_32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_path.o ** Message: Adding function [optimal_58_ungapped_58_codon_32_find_32_path] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_region.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_region.o ** Message: Adding function [optimal_58_ungapped_58_codon_32_find_32_region] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_checkpoint.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_checkpoint.o ** Message: Adding function [optimal_58_ungapped_58_codon_32_find_32_checkpoint] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_path_32_continuation.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_path_32_continuation.o ** Message: Adding function [optimal_58_ungapped_58_codon_32_find_32_path_32_continuation] ** Message: Processing model [a:g] ** Message: Bootstrapper processing model [affine:global:dna2dna] ** Message: Process optimal [optimal:affine:global:dna2dna] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_dna2dna_32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_dna2dna_32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_dna2dna_32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_dna2dna_32_find_32_path.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_dna2dna_32_find_32_checkpoint.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_dna2dna_32_find_32_checkpoint.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_dna2dna_32_find_32_path_32_continuation.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_dna2dna_32_find_32_path_32_continuation.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_dna2dna_32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_dna2dna_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_dna2dna_32_find_32_score.o ** Message: Adding function [optimal_58_affine_58_global_58_dna2dna_32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_dna2dna_32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_dna2dna_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_dna2dna_32_find_32_path.o ** Message: Adding function [optimal_58_affine_58_global_58_dna2dna_32_find_32_path] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_dna2dna_32_find_32_checkpoint.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_dna2dna_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_dna2dna_32_find_32_checkpoint.o ** Message: Adding function [optimal_58_affine_58_global_58_dna2dna_32_find_32_checkpoint] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_dna2dna_32_find_32_path_32_continuation.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_dna2dna_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_dna2dna_32_find_32_path_32_continuation.o ** Message: Adding function [optimal_58_affine_58_global_58_dna2dna_32_find_32_path_32_continuation] ** Message: Bootstrapper processing model [affine:global:protein2protein] ** Message: Process optimal [optimal:affine:global:protein2protein] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_protein2protein_32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_protein2protein_32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_protein2protein_32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_protein2protein_32_find_32_path.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_protein2protein_32_find_32_checkpoint.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_protein2protein_32_find_32_checkpoint.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_protein2protein_32_find_32_path_32_continuation.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_protein2protein_32_find_32_path_32_continuation.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_protein2protein_32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_protein2protein_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_protein2protein_32_find_32_score.o ** Message: Adding function [optimal_58_affine_58_global_58_protein2protein_32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_protein2protein_32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_protein2protein_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_protein2protein_32_find_32_path.o ** Message: Adding function [optimal_58_affine_58_global_58_protein2protein_32_find_32_path] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_protein2protein_32_find_32_checkpoint.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_protein2protein_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_protein2protein_32_find_32_checkpoint.o ** Message: Adding function [optimal_58_affine_58_global_58_protein2protein_32_find_32_checkpoint] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_protein2protein_32_find_32_path_32_continuation.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_protein2protein_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_protein2protein_32_find_32_path_32_continuation.o ** Message: Adding function [optimal_58_affine_58_global_58_protein2protein_32_find_32_path_32_continuation] ** Message: Processing model [a:b] ** Message: Bootstrapper processing model [affine:bestfit:dna2dna] ** Message: Process optimal [optimal:affine:bestfit:dna2dna] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_path.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_region.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_region.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_checkpoint.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_checkpoint.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_path_32_continuation.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_path_32_continuation.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_score.o ** Message: Adding function [optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_path.o ** Message: Adding function [optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_path] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_region.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_region.o ** Message: Adding function [optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_region] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_checkpoint.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_checkpoint.o ** Message: Adding function [optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_checkpoint] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_path_32_continuation.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_path_32_continuation.o ** Message: Adding function [optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_path_32_continuation] ** Message: Bootstrapper processing model [affine:bestfit:protein2protein] ** Message: Process optimal [optimal:affine:bestfit:protein2protein] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_path.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_region.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_region.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_checkpoint.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_checkpoint.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_path_32_continuation.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_path_32_continuation.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_score.o ** Message: Adding function [optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_path.o ** Message: Adding function [optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_path] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_region.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_region.o ** Message: Adding function [optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_region] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_checkpoint.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_checkpoint.o ** Message: Adding function [optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_checkpoint] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_path_32_continuation.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_path_32_continuation.o ** Message: Adding function [optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_path_32_continuation] ** Message: Processing model [a:l] ** Message: Bootstrapper processing model [affine:local:dna2dna] ** Message: Process optimal [optimal:affine:local:dna2dna] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_path.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_region.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_region.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_checkpoint.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_checkpoint.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_path_32_continuation.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_path_32_continuation.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_score.o ** Message: Adding function [optimal_58_affine_58_local_58_dna2dna_32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_path.o ** Message: Adding function [optimal_58_affine_58_local_58_dna2dna_32_find_32_path] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_region.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_region.o ** Message: Adding function [optimal_58_affine_58_local_58_dna2dna_32_find_32_region] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_checkpoint.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_checkpoint.o ** Message: Adding function [optimal_58_affine_58_local_58_dna2dna_32_find_32_checkpoint] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_path_32_continuation.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_path_32_continuation.o ** Message: Adding function [optimal_58_affine_58_local_58_dna2dna_32_find_32_path_32_continuation] ** Message: Process optimal [Terminal [Segment("START"->"match"):[affine:local:dna2dna]]] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score.o ** Message: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path.o ** Message: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path] ** Message: Process optimal [Terminal [Segment("match"->"END"):[affine:local:dna2dna]]] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score.o ** Message: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path.o ** Message: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path] ** Message: Process optimal [HeuristicJoin:[Segment("match"->"match"):[affine:local:dna2dna]]] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score.o ** Message: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path.o ** Message: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_affine_58_local_58_dna2dna_58_reverse_58_traceback_58_seeded.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_affine_58_local_58_dna2dna_58_reverse_58_traceback_58_seeded.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_affine_58_local_58_dna2dna_58_forward_58_traceback_58_seeded.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_affine_58_local_58_dna2dna_58_forward_58_traceback_58_seeded.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_affine_58_local_58_dna2dna_58_reverse_58_traceback_58_seeded.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_affine_58_local_58_dna2dna_58_reverse_58_traceback_58_seeded.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_affine_58_local_58_dna2dna_58_reverse_58_traceback_58_seeded.o ** Message: Adding function [Scheduler_Cell_process_affine_58_local_58_dna2dna_58_reverse_58_traceback_58_seeded] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_affine_58_local_58_dna2dna_58_forward_58_traceback_58_seeded.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_affine_58_local_58_dna2dna_58_forward_58_traceback_58_seeded.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_affine_58_local_58_dna2dna_58_forward_58_traceback_58_seeded.o ** Message: Adding function [Scheduler_Cell_process_affine_58_local_58_dna2dna_58_forward_58_traceback_58_seeded] ** Message: Bootstrapper processing model [affine:local:protein2protein] ** Message: Process optimal [optimal:affine:local:protein2protein] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_path.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_region.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_region.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_checkpoint.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_checkpoint.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_path_32_continuation.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_path_32_continuation.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_score.o ** Message: Adding function [optimal_58_affine_58_local_58_protein2protein_32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_path.o ** Message: Adding function [optimal_58_affine_58_local_58_protein2protein_32_find_32_path] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_region.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_region.o ** Message: Adding function [optimal_58_affine_58_local_58_protein2protein_32_find_32_region] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_checkpoint.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_checkpoint.o ** Message: Adding function [optimal_58_affine_58_local_58_protein2protein_32_find_32_checkpoint] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_path_32_continuation.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_path_32_continuation.o ** Message: Adding function [optimal_58_affine_58_local_58_protein2protein_32_find_32_path_32_continuation] ** Message: Process optimal [Terminal [Segment("START"->"match"):[affine:local:protein2protein]]] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score.o ** Message: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path.o ** Message: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path] ** Message: Process optimal [Terminal [Segment("match"->"END"):[affine:local:protein2protein]]] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score.o ** Message: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path.o ** Message: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path] ** Message: Process optimal [HeuristicJoin:[Segment("match"->"match"):[affine:local:protein2protein]]] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score.o ** Message: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path.o ** Message: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_affine_58_local_58_protein2protein_58_reverse_58_traceback_58_seeded.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_affine_58_local_58_protein2protein_58_reverse_58_traceback_58_seeded.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_affine_58_local_58_protein2protein_58_forward_58_traceback_58_seeded.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_affine_58_local_58_protein2protein_58_forward_58_traceback_58_seeded.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_affine_58_local_58_protein2protein_58_reverse_58_traceback_58_seeded.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_affine_58_local_58_protein2protein_58_reverse_58_traceback_58_seeded.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_affine_58_local_58_protein2protein_58_reverse_58_traceback_58_seeded.o ** Message: Adding function [Scheduler_Cell_process_affine_58_local_58_protein2protein_58_reverse_58_traceback_58_seeded] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_affine_58_local_58_protein2protein_58_forward_58_traceback_58_seeded.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_affine_58_local_58_protein2protein_58_forward_58_traceback_58_seeded.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_affine_58_local_58_protein2protein_58_forward_58_traceback_58_seeded.o ** Message: Adding function [Scheduler_Cell_process_affine_58_local_58_protein2protein_58_forward_58_traceback_58_seeded] ** Message: Processing model [a:o] ** Message: Bootstrapper processing model [affine:overlap:dna2dna] ** Message: Process optimal [optimal:affine:overlap:dna2dna] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_path.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_region.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_region.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_checkpoint.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_checkpoint.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_path_32_continuation.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_path_32_continuation.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_score.o ** Message: Adding function [optimal_58_affine_58_overlap_58_dna2dna_32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_path.o ** Message: Adding function [optimal_58_affine_58_overlap_58_dna2dna_32_find_32_path] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_region.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_region.o ** Message: Adding function [optimal_58_affine_58_overlap_58_dna2dna_32_find_32_region] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_checkpoint.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_checkpoint.o ** Message: Adding function [optimal_58_affine_58_overlap_58_dna2dna_32_find_32_checkpoint] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_path_32_continuation.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_path_32_continuation.o ** Message: Adding function [optimal_58_affine_58_overlap_58_dna2dna_32_find_32_path_32_continuation] ** Message: Processing model [e2g] ** Message: Bootstrapper processing model [est2genome] ** Message: Process optimal [optimal:est2genome] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_path.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_region.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_region.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_checkpoint.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_checkpoint.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_path_32_continuation.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_path_32_continuation.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_score.o ** Message: Adding function [optimal_58_est2genome_32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_path.o ** Message: Adding function [optimal_58_est2genome_32_find_32_path] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_region.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_region.o ** Message: Adding function [optimal_58_est2genome_32_find_32_region] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_checkpoint.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_checkpoint.o ** Message: Adding function [optimal_58_est2genome_32_find_32_checkpoint] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_path_32_continuation.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_path_32_continuation.o ** Message: Adding function [optimal_58_est2genome_32_find_32_path_32_continuation] ** Message: Process optimal [Terminal [Segment("START"->"match reverse"):[est2genome]]] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o ** Message: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o ** Message: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path] ** Message: Process optimal [Terminal [Segment("match reverse"->"END"):[est2genome]]] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_reverse_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_reverse_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_reverse_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_reverse_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_reverse_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_reverse_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_reverse_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_score.o ** Message: Adding function [Terminal_32__91_Segment_40__34_match_32_reverse_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_reverse_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_reverse_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_reverse_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_path.o ** Message: Adding function [Terminal_32__91_Segment_40__34_match_32_reverse_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_path] ** Message: Process optimal [Terminal [Segment("START"->"match forward"):[est2genome]]] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o ** Message: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o ** Message: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path] ** Message: Process optimal [Terminal [Segment("match forward"->"END"):[est2genome]]] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_forward_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_forward_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_forward_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_forward_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_forward_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_forward_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_forward_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_score.o ** Message: Adding function [Terminal_32__91_Segment_40__34_match_32_forward_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_forward_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_forward_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_forward_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_path.o ** Message: Adding function [Terminal_32__91_Segment_40__34_match_32_forward_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_path] ** Message: Process optimal [HeuristicJoin:[Segment("match reverse"->"match reverse"):[est2genome]]] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o ** Message: Adding function [HeuristicJoin_58__91_Segment_40__34_match_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o ** Message: Adding function [HeuristicJoin_58__91_Segment_40__34_match_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path] ** Message: Process optimal [Src span [Segment("match reverse"->"intron reverse"):[est2genome]]] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o ** Message: Adding function [Src_32_span_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o ** Message: Adding function [Src_32_span_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path] ** Message: Process optimal [Src span traceback [Segment("match reverse"->"intron reverse"):[est2genome]]] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o ** Message: Adding function [Src_32_span_32_traceback_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path] ** Message: Process optimal [Dst span [Segment("intron reverse"->"match reverse"):[est2genome]]] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o ** Message: Adding function [Dst_32_span_32__91_Segment_40__34_intron_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o ** Message: Adding function [Dst_32_span_32__91_Segment_40__34_intron_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path] ** Message: Process optimal [HeuristicJoin:[Segment("match forward"->"match forward"):[est2genome]]] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o ** Message: Adding function [HeuristicJoin_58__91_Segment_40__34_match_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o ** Message: Adding function [HeuristicJoin_58__91_Segment_40__34_match_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path] ** Message: Process optimal [Src span [Segment("match forward"->"intron forward"):[est2genome]]] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o ** Message: Adding function [Src_32_span_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o ** Message: Adding function [Src_32_span_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path] ** Message: Process optimal [Src span traceback [Segment("match forward"->"intron forward"):[est2genome]]] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o ** Message: Adding function [Src_32_span_32_traceback_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path] ** Message: Process optimal [Dst span [Segment("intron forward"->"match forward"):[est2genome]]] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o ** Message: Adding function [Dst_32_span_32__91_Segment_40__34_intron_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o ** Message: Adding function [Dst_32_span_32__91_Segment_40__34_intron_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_est2genome_58_reverse_58_notraceback_58_boundary.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_est2genome_58_reverse_58_notraceback_58_boundary.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_est2genome_58_forward_58_traceback_58_boundary.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_est2genome_58_forward_58_traceback_58_boundary.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_est2genome_58_reverse_58_notraceback_58_boundary.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_est2genome_58_reverse_58_notraceback_58_boundary.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_est2genome_58_reverse_58_notraceback_58_boundary.o ** Message: Adding function [Scheduler_Cell_process_est2genome_58_reverse_58_notraceback_58_boundary] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_est2genome_58_forward_58_traceback_58_boundary.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_est2genome_58_forward_58_traceback_58_boundary.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_est2genome_58_forward_58_traceback_58_boundary.o ** Message: Adding function [Scheduler_Cell_process_est2genome_58_forward_58_traceback_58_boundary] ** Message: Processing model [ner] ** Message: Bootstrapper processing model [NER:affine:local:dna2dna] ** Message: Process optimal [optimal:NER:affine:local:dna2dna] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_path.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_region.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_region.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_checkpoint.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_checkpoint.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_path_32_continuation.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_path_32_continuation.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_score.o ** Message: Adding function [optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_path.o ** Message: Adding function [optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_path] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_region.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_region.o ** Message: Adding function [optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_region] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_checkpoint.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_checkpoint.o ** Message: Adding function [optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_checkpoint] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_path_32_continuation.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_path_32_continuation.o ** Message: Adding function [optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_path_32_continuation] ** Message: Process optimal [Terminal [Segment("START"->"match"):[NER:affine:local:dna2dna]]] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o ** Message: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o ** Message: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path] ** Message: Process optimal [Terminal [Segment("match"->"END"):[NER:affine:local:dna2dna]]] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o ** Message: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o ** Message: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path] ** Message: Process optimal [HeuristicJoin:[Segment("match"->"match"):[NER:affine:local:dna2dna]]] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o ** Message: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o ** Message: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path] ** Message: Process optimal [Src span [Segment("match"->"ner"):[NER:affine:local:dna2dna]]] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o ** Message: Adding function [Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o ** Message: Adding function [Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path] ** Message: Process optimal [Src span traceback [Segment("match"->"ner"):[NER:affine:local:dna2dna]]] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o ** Message: Adding function [Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path] ** Message: Process optimal [Dst span [Segment("ner"->"match"):[NER:affine:local:dna2dna]]] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o ** Message: Adding function [Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o ** Message: Adding function [Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_NER_58_affine_58_local_58_dna2dna_58_reverse_58_notraceback_58_boundary.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_NER_58_affine_58_local_58_dna2dna_58_reverse_58_notraceback_58_boundary.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_NER_58_affine_58_local_58_dna2dna_58_forward_58_traceback_58_boundary.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_NER_58_affine_58_local_58_dna2dna_58_forward_58_traceback_58_boundary.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_NER_58_affine_58_local_58_dna2dna_58_reverse_58_notraceback_58_boundary.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_NER_58_affine_58_local_58_dna2dna_58_reverse_58_notraceback_58_boundary.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_NER_58_affine_58_local_58_dna2dna_58_reverse_58_notraceback_58_boundary.o ** Message: Adding function [Scheduler_Cell_process_NER_58_affine_58_local_58_dna2dna_58_reverse_58_notraceback_58_boundary] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_NER_58_affine_58_local_58_dna2dna_58_forward_58_traceback_58_boundary.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_NER_58_affine_58_local_58_dna2dna_58_forward_58_traceback_58_boundary.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_NER_58_affine_58_local_58_dna2dna_58_forward_58_traceback_58_boundary.o ** Message: Adding function [Scheduler_Cell_process_NER_58_affine_58_local_58_dna2dna_58_forward_58_traceback_58_boundary] ** Message: Bootstrapper processing model [NER:affine:local:protein2protein] ** Message: Process optimal [optimal:NER:affine:local:protein2protein] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_path.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_region.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_region.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_checkpoint.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_checkpoint.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_path_32_continuation.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_path_32_continuation.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_score.o ** Message: Adding function [optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_path.o ** Message: Adding function [optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_path] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_region.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_region.o ** Message: Adding function [optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_region] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_checkpoint.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_checkpoint.o ** Message: Adding function [optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_checkpoint] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_path_32_continuation.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_path_32_continuation.o ** Message: Adding function [optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_path_32_continuation] ** Message: Process optimal [Terminal [Segment("START"->"match"):[NER:affine:local:protein2protein]]] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o ** Message: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o ** Message: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path] ** Message: Process optimal [Terminal [Segment("match"->"END"):[NER:affine:local:protein2protein]]] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o ** Message: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o ** Message: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path] ** Message: Process optimal [HeuristicJoin:[Segment("match"->"match"):[NER:affine:local:protein2protein]]] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o ** Message: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o ** Message: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path] ** Message: Process optimal [Src span [Segment("match"->"ner"):[NER:affine:local:protein2protein]]] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o ** Message: Adding function [Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o ** Message: Adding function [Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path] ** Message: Process optimal [Src span traceback [Segment("match"->"ner"):[NER:affine:local:protein2protein]]] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o ** Message: Adding function [Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path] ** Message: Process optimal [Dst span [Segment("ner"->"match"):[NER:affine:local:protein2protein]]] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o ** Message: Adding function [Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o ** Message: Adding function [Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_NER_58_affine_58_local_58_protein2protein_58_reverse_58_notraceback_58_boundary.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_NER_58_affine_58_local_58_protein2protein_58_reverse_58_notraceback_58_boundary.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_NER_58_affine_58_local_58_protein2protein_58_forward_58_traceback_58_boundary.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_NER_58_affine_58_local_58_protein2protein_58_forward_58_traceback_58_boundary.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_NER_58_affine_58_local_58_protein2protein_58_reverse_58_notraceback_58_boundary.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_NER_58_affine_58_local_58_protein2protein_58_reverse_58_notraceback_58_boundary.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_NER_58_affine_58_local_58_protein2protein_58_reverse_58_notraceback_58_boundary.o ** Message: Adding function [Scheduler_Cell_process_NER_58_affine_58_local_58_protein2protein_58_reverse_58_notraceback_58_boundary] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_NER_58_affine_58_local_58_protein2protein_58_forward_58_traceback_58_boundary.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_NER_58_affine_58_local_58_protein2protein_58_forward_58_traceback_58_boundary.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_NER_58_affine_58_local_58_protein2protein_58_forward_58_traceback_58_boundary.o ** Message: Adding function [Scheduler_Cell_process_NER_58_affine_58_local_58_protein2protein_58_forward_58_traceback_58_boundary] ** Message: Processing model [p2d] ** Message: Bootstrapper processing model [protein2dna:local] ** Message: Process optimal [optimal:protein2dna:local] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_path.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_region.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_region.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_checkpoint.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_checkpoint.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_path_32_continuation.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_path_32_continuation.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_score.o ** Message: Adding function [optimal_58_protein2dna_58_local_32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_path.o ** Message: Adding function [optimal_58_protein2dna_58_local_32_find_32_path] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_region.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_region.o ** Message: Adding function [optimal_58_protein2dna_58_local_32_find_32_region] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_checkpoint.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_checkpoint.o ** Message: Adding function [optimal_58_protein2dna_58_local_32_find_32_checkpoint] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_path_32_continuation.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_path_32_continuation.o ** Message: Adding function [optimal_58_protein2dna_58_local_32_find_32_path_32_continuation] ** Message: Process optimal [Terminal [Segment("START"->"match"):[protein2dna:local]]] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score.o ** Message: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path.o ** Message: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path] ** Message: Process optimal [Terminal [Segment("match"->"END"):[protein2dna:local]]] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score.o ** Message: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path.o ** Message: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path] ** Message: Process optimal [HeuristicJoin:[Segment("match"->"match"):[protein2dna:local]]] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score.o ** Message: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path.o ** Message: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_protein2dna_58_local_58_reverse_58_traceback_58_seeded.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_protein2dna_58_local_58_reverse_58_traceback_58_seeded.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_protein2dna_58_local_58_forward_58_traceback_58_seeded.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_protein2dna_58_local_58_forward_58_traceback_58_seeded.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_protein2dna_58_local_58_reverse_58_traceback_58_seeded.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_protein2dna_58_local_58_reverse_58_traceback_58_seeded.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_protein2dna_58_local_58_reverse_58_traceback_58_seeded.o ** Message: Adding function [Scheduler_Cell_process_protein2dna_58_local_58_reverse_58_traceback_58_seeded] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_protein2dna_58_local_58_forward_58_traceback_58_seeded.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_protein2dna_58_local_58_forward_58_traceback_58_seeded.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_protein2dna_58_local_58_forward_58_traceback_58_seeded.o ** Message: Adding function [Scheduler_Cell_process_protein2dna_58_local_58_forward_58_traceback_58_seeded] ** Message: Processing model [p2d:b] ** Message: Bootstrapper processing model [protein2dna:bestfit] ** Message: Process optimal [optimal:protein2dna:bestfit] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_path.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_region.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_region.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_checkpoint.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_checkpoint.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_path_32_continuation.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_path_32_continuation.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_score.o ** Message: Adding function [optimal_58_protein2dna_58_bestfit_32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_path.o ** Message: Adding function [optimal_58_protein2dna_58_bestfit_32_find_32_path] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_region.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_region.o ** Message: Adding function [optimal_58_protein2dna_58_bestfit_32_find_32_region] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_checkpoint.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_checkpoint.o ** Message: Adding function [optimal_58_protein2dna_58_bestfit_32_find_32_checkpoint] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_path_32_continuation.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_path_32_continuation.o ** Message: Adding function [optimal_58_protein2dna_58_bestfit_32_find_32_path_32_continuation] ** Message: Processing model [p2g] ** Message: Bootstrapper processing model [protein2genome:local] ** Message: Process optimal [optimal:protein2genome:local] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_path.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_region.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_region.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_checkpoint.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_checkpoint.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_path_32_continuation.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_path_32_continuation.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_score.o ** Message: Adding function [optimal_58_protein2genome_58_local_32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_path.o ** Message: Adding function [optimal_58_protein2genome_58_local_32_find_32_path] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_region.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_region.o ** Message: Adding function [optimal_58_protein2genome_58_local_32_find_32_region] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_checkpoint.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_checkpoint.o ** Message: Adding function [optimal_58_protein2genome_58_local_32_find_32_checkpoint] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_path_32_continuation.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_path_32_continuation.o ** Message: Adding function [optimal_58_protein2genome_58_local_32_find_32_path_32_continuation] ** Message: Process optimal [Terminal [Segment("START"->"match"):[protein2genome:local]]] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o ** Message: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o ** Message: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path] ** Message: Process optimal [Terminal [Segment("match"->"END"):[protein2genome:local]]] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o ** Message: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o ** Message: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path] ** Message: Process optimal [HeuristicJoin:[Segment("match"->"match"):[protein2genome:local]]] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o ** Message: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o ** Message: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path] ** Message: Process optimal [Src span [Segment("match"->"intron 0:0 phase-T"):[protein2genome:local]]] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o ** Message: Adding function [Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o ** Message: Adding function [Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path] ** Message: Process optimal [Src span traceback [Segment("match"->"intron 0:0 phase-T"):[protein2genome:local]]] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o ** Message: Adding function [Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path] ** Message: Process optimal [Dst span [Segment("intron 0:0 phase-T"->"match"):[protein2genome:local]]] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_0_58_0_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_0_58_0_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_0_58_0_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_0_58_0_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_0_58_0_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_0_58_0_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_0_58_0_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o ** Message: Adding function [Dst_32_span_32__91_Segment_40__34_intron_32_0_58_0_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_0_58_0_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_0_58_0_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_0_58_0_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o ** Message: Adding function [Dst_32_span_32__91_Segment_40__34_intron_32_0_58_0_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path] ** Message: Process optimal [Src span [Segment("match"->"intron 1:2 phase-T"):[protein2genome:local]]] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o ** Message: Adding function [Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o ** Message: Adding function [Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path] ** Message: Process optimal [Src span traceback [Segment("match"->"intron 1:2 phase-T"):[protein2genome:local]]] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o ** Message: Adding function [Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path] ** Message: Process optimal [Dst span [Segment("intron 1:2 phase-T"->"match"):[protein2genome:local]]] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_1_58_2_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_1_58_2_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_1_58_2_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_1_58_2_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_1_58_2_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_1_58_2_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_1_58_2_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o ** Message: Adding function [Dst_32_span_32__91_Segment_40__34_intron_32_1_58_2_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_1_58_2_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_1_58_2_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_1_58_2_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o ** Message: Adding function [Dst_32_span_32__91_Segment_40__34_intron_32_1_58_2_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path] ** Message: Process optimal [Src span [Segment("match"->"intron 2:1 phase-T"):[protein2genome:local]]] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o ** Message: Adding function [Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o ** Message: Adding function [Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path] ** Message: Process optimal [Src span traceback [Segment("match"->"intron 2:1 phase-T"):[protein2genome:local]]] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o ** Message: Adding function [Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path] ** Message: Process optimal [Dst span [Segment("intron 2:1 phase-T"->"match"):[protein2genome:local]]] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_2_58_1_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_2_58_1_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_2_58_1_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_2_58_1_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_2_58_1_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_2_58_1_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_2_58_1_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o ** Message: Adding function [Dst_32_span_32__91_Segment_40__34_intron_32_2_58_1_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_2_58_1_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_2_58_1_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_2_58_1_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o ** Message: Adding function [Dst_32_span_32__91_Segment_40__34_intron_32_2_58_1_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_protein2genome_58_local_58_reverse_58_notraceback_58_boundary.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_protein2genome_58_local_58_reverse_58_notraceback_58_boundary.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_protein2genome_58_local_58_forward_58_traceback_58_boundary.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_protein2genome_58_local_58_forward_58_traceback_58_boundary.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_protein2genome_58_local_58_reverse_58_notraceback_58_boundary.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_protein2genome_58_local_58_reverse_58_notraceback_58_boundary.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_protein2genome_58_local_58_reverse_58_notraceback_58_boundary.o ** Message: Adding function [Scheduler_Cell_process_protein2genome_58_local_58_reverse_58_notraceback_58_boundary] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_protein2genome_58_local_58_forward_58_traceback_58_boundary.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_protein2genome_58_local_58_forward_58_traceback_58_boundary.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_protein2genome_58_local_58_forward_58_traceback_58_boundary.o ** Message: Adding function [Scheduler_Cell_process_protein2genome_58_local_58_forward_58_traceback_58_boundary] ** Message: Processing model [p2g:b] ** Message: Bootstrapper processing model [protein2genome:bestfit] ** Message: Process optimal [optimal:protein2genome:bestfit] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_path.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_region.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_region.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_checkpoint.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_checkpoint.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_path_32_continuation.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_path_32_continuation.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_score.o ** Message: Adding function [optimal_58_protein2genome_58_bestfit_32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_path.o ** Message: Adding function [optimal_58_protein2genome_58_bestfit_32_find_32_path] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_region.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_region.o ** Message: Adding function [optimal_58_protein2genome_58_bestfit_32_find_32_region] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_checkpoint.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_checkpoint.o ** Message: Adding function [optimal_58_protein2genome_58_bestfit_32_find_32_checkpoint] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_path_32_continuation.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_path_32_continuation.o ** Message: Adding function [optimal_58_protein2genome_58_bestfit_32_find_32_path_32_continuation] ** Message: Processing model [c2c] ** Message: Bootstrapper processing model [coding2coding] ** Message: Process optimal [optimal:coding2coding] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_path.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_region.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_region.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_checkpoint.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_checkpoint.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_path_32_continuation.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_path_32_continuation.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_score.o ** Message: Adding function [optimal_58_coding2coding_32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_path.o ** Message: Adding function [optimal_58_coding2coding_32_find_32_path] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_region.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_region.o ** Message: Adding function [optimal_58_coding2coding_32_find_32_region] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_checkpoint.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_checkpoint.o ** Message: Adding function [optimal_58_coding2coding_32_find_32_checkpoint] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_path_32_continuation.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_path_32_continuation.o ** Message: Adding function [optimal_58_coding2coding_32_find_32_path_32_continuation] ** Message: Process optimal [Terminal [Segment("START"->"match"):[coding2coding]]] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score.o ** Message: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path.o ** Message: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path] ** Message: Process optimal [Terminal [Segment("match"->"END"):[coding2coding]]] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_score.o ** Message: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_path.o ** Message: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_path] ** Message: Process optimal [HeuristicJoin:[Segment("match"->"match"):[coding2coding]]] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score.o ** Message: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path.o ** Message: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_coding2coding_58_reverse_58_traceback_58_seeded.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_coding2coding_58_reverse_58_traceback_58_seeded.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_coding2coding_58_forward_58_traceback_58_seeded.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_coding2coding_58_forward_58_traceback_58_seeded.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_coding2coding_58_reverse_58_traceback_58_seeded.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_coding2coding_58_reverse_58_traceback_58_seeded.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_coding2coding_58_reverse_58_traceback_58_seeded.o ** Message: Adding function [Scheduler_Cell_process_coding2coding_58_reverse_58_traceback_58_seeded] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_coding2coding_58_forward_58_traceback_58_seeded.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_coding2coding_58_forward_58_traceback_58_seeded.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_coding2coding_58_forward_58_traceback_58_seeded.o ** Message: Adding function [Scheduler_Cell_process_coding2coding_58_forward_58_traceback_58_seeded] ** Message: Processing model [c2g] ** Message: Bootstrapper processing model [coding2genome] ** Message: Process optimal [optimal:coding2genome] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_path.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_region.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_region.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_checkpoint.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_checkpoint.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_path_32_continuation.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_path_32_continuation.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_score.o ** Message: Adding function [optimal_58_coding2genome_32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_path.o ** Message: Adding function [optimal_58_coding2genome_32_find_32_path] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_region.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_region.o ** Message: Adding function [optimal_58_coding2genome_32_find_32_region] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_checkpoint.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_checkpoint.o ** Message: Adding function [optimal_58_coding2genome_32_find_32_checkpoint] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_path_32_continuation.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_path_32_continuation.o ** Message: Adding function [optimal_58_coding2genome_32_find_32_path_32_continuation] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_coding2genome_58_reverse_58_notraceback_58_boundary.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_coding2genome_58_reverse_58_notraceback_58_boundary.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_coding2genome_58_forward_58_traceback_58_boundary.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_coding2genome_58_forward_58_traceback_58_boundary.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_coding2genome_58_reverse_58_notraceback_58_boundary.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_coding2genome_58_reverse_58_notraceback_58_boundary.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_coding2genome_58_reverse_58_notraceback_58_boundary.o ** Message: Adding function [Scheduler_Cell_process_coding2genome_58_reverse_58_notraceback_58_boundary] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_coding2genome_58_forward_58_traceback_58_boundary.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_coding2genome_58_forward_58_traceback_58_boundary.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_coding2genome_58_forward_58_traceback_58_boundary.o ** Message: Adding function [Scheduler_Cell_process_coding2genome_58_forward_58_traceback_58_boundary] ** Message: Processing model [cd2g] ** Message: Bootstrapper processing model [cdna2genome] ** Message: Process optimal [optimal:cdna2genome] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_path.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_region.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_region.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_checkpoint.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_checkpoint.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_path_32_continuation.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_path_32_continuation.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_score.o ** Message: Adding function [optimal_58_cdna2genome_32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_path.o ** Message: Adding function [optimal_58_cdna2genome_32_find_32_path] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_region.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_region.o ** Message: Adding function [optimal_58_cdna2genome_32_find_32_region] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_checkpoint.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_checkpoint.o ** Message: Adding function [optimal_58_cdna2genome_32_find_32_checkpoint] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_path_32_continuation.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_path_32_continuation.o ** Message: Adding function [optimal_58_cdna2genome_32_find_32_path_32_continuation] ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_cdna2genome_58_reverse_58_notraceback_58_boundary.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_cdna2genome_58_reverse_58_notraceback_58_boundary.c ** Message: Compiling codegen: gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_cdna2genome_58_forward_58_traceback_58_boundary.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_cdna2genome_58_forward_58_traceback_58_boundary.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_cdna2genome_58_reverse_58_notraceback_58_boundary.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_cdna2genome_58_reverse_58_notraceback_58_boundary.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_cdna2genome_58_reverse_58_notraceback_58_boundary.o ** Message: Adding function [Scheduler_Cell_process_cdna2genome_58_reverse_58_notraceback_58_boundary] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_cdna2genome_58_forward_58_traceback_58_boundary.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_cdna2genome_58_forward_58_traceback_58_boundary.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_cdna2genome_58_forward_58_traceback_58_boundary.o ** Message: Adding function [Scheduler_Cell_process_cdna2genome_58_forward_58_traceback_58_boundary] ** Message: Compiling with: [gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/sequence -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/struct -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -o c4_model_lookup.o -c c4_model_lookup.c] c4_model_lookup.c: In function ‘Bootstrapper_lookup’: c4_model_lookup.c:5:9: warning: implicit declaration of function ‘strcmp’ [-Wimplicit-function-declaration] if(!strcmp(name, "optimal_58_ungapped_58_dna2dna_32_find_32_score")) ^ ** Message: Adding: [c4_model_lookup.o] ** Message: Adding object file [c4_model_lookup.o] to archive ar -Sq c4_model_archive.a c4_model_lookup.o ** Message: Indexing archive [c4_model_archive.a] ranlib c4_model_archive.a ** Message: Done ** Message: Finished building bootstrapping components make all-am make[4]: Entering directory '/«PKGBUILDDIR»/src/program' gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/comparison -I../../src/struct -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/model -I../../src/hub -I../../src/general -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DCUSTOM_GUINT64_FORMAT="\"llu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o exonerate.o exonerate.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I../../src/sequence -I../../src/database -I../../src/comparison -I../../src/struct -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/model -I../../src/hub -I../../src/general -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DCUSTOM_GUINT64_FORMAT="\"llu\"" -I. \ -DUSE_COMPILED_MODELS \ -c ../../src/c4/viterbi.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I../../src/sequence -I../../src/database -I../../src/comparison -I../../src/struct -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/model -I../../src/hub -I../../src/general -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DCUSTOM_GUINT64_FORMAT="\"llu\"" -I. \ -DUSE_COMPILED_MODELS \ -c ../../src/sdp/scheduler.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o exonerate exonerate.o viterbi.o scheduler.o c4_model_archive.a ../../src/comparison/wordhood.o ../../src/comparison/hspset.o ../../src/comparison/seeder.o ../../src/comparison/comparison.o ../../src/database/fastapipe.o ../../src/database/fastadb.o ../../src/struct/dejavu.o ../../src/struct/fsm.o ../../src/struct/vfsm.o ../../src/struct/sparsecache.o ../../src/hub/gam.o ../../src/hub/bsam.o ../../src/hub/analysis.o ../../src/general/compoundfile.o ../../src/general/threadref.o ../../src/c4/c4.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/opair.o ../../src/c4/alignment.o ../../src/c4/optimal.o ../../src/c4/layout.o ../../src/c4/region.o ../../src/c4/subopt.o ../../src/bsdp/bsdp.o ../../src/bsdp/sar.o ../../src/bsdp/heuristic.o ../../src/bsdp/hpair.o ../../src/sdp/boundary.o ../../src/sdp/sdp.o ../../src/sdp/lookahead.o ../../src/sdp/straceback.o ../../src/struct/matrix.o ../../src/struct/slist.o ../../src/struct/pqueue.o ../../src/struct/recyclebin.o ../../src/struct/rangetree.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/translate.o ../../src/sequence/splice.o ../../src/model/affine.o ../../src/model/est2genome.o ../../src/model/ner.o ../../src/model/protein2dna.o ../../src/model/protein2genome.o ../../src/model/coding2coding.o ../../src/model/coding2genome.o ../../src/model/cdna2genome.o ../../src/model/genome2genome.o ../../src/model/ungapped.o ../../src/model/intron.o ../../src/model/frameshift.o ../../src/model/phase.o ../../src/model/modeltype.o ../../src/general/argument.o ../../src/general/lineparse.o ../../src/general/socket.o ../../src/general/jobqueue.o ../../src/comparison/match.o ../../src/sequence/submat.o ../../src/sequence/codonsubmat.o -lm -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/comparison -I../../src/struct -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/model -I../../src/hub -I../../src/general -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DCUSTOM_GUINT64_FORMAT="\"llu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o ipcress.o ipcress.c ipcress.c: In function ‘Ipcress_prepare_PCR’: ipcress.c:264:9: warning: ‘g_strup’ is deprecated [-Wdeprecated-declarations] g_strup(primer_a); ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from ipcress.c:16: /usr/include/glib-2.0/glib/gstrfuncs.h:209:23: note: declared here gchar* g_strup (gchar *string); ^ ipcress.c:265:9: warning: ‘g_strup’ is deprecated [-Wdeprecated-declarations] g_strup(primer_b); ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from ipcress.c:16: /usr/include/glib-2.0/glib/gstrfuncs.h:209:23: note: declared here gchar* g_strup (gchar *string); ^ gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o ipcress ipcress.o ../../src/comparison/pcr.o ../../src/comparison/wordhood.o ../../src/database/fastadb.o ../../src/sequence/alphabet.o ../../src/sequence/sequence.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/sequence/submat.o ../../src/sequence/codonsubmat.o ../../src/struct/fsm.o ../../src/struct/slist.o ../../src/struct/matrix.o ../../src/struct/recyclebin.o ../../src/struct/sparsecache.o ../../src/general/lineparse.o ../../src/general/argument.o ../../src/general/compoundfile.o -lm -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/comparison -I../../src/struct -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/model -I../../src/hub -I../../src/general -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DCUSTOM_GUINT64_FORMAT="\"llu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o exonerate-server.o exonerate-server.c exonerate-server.c: In function ‘Exonerate_Server_process’: exonerate-server.c:669:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘guint64 {aka long unsigned int}’ [-Wformat=] (*reply) = g_strdup_printf("dbinfo: %s %s" ^ exonerate-server.c:669:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘guint64 {aka long unsigned int}’ [-Wformat=] exonerate-server.c:669:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘guint64 {aka long unsigned int}’ [-Wformat=] gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o exonerate-server exonerate-server.o ../../src/general/socket.o ../../src/general/argument.o ../../src/comparison/hspset.o ../../src/comparison/match.o ../../src/comparison/wordhood.o ../../src/database/dataset.o ../../src/database/index.o ../../src/database/fastadb.o ../../src/struct/bitarray.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/struct/splaytree.o ../../src/struct/noitree.o ../../src/struct/vfsm.o ../../src/struct/pqueue.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/translate.o ../../src/sequence/splice.o ../../src/sequence/submat.o ../../src/sequence/codonsubmat.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/general/threadref.o -lm -lglib-2.0 make[4]: Leaving directory '/«PKGBUILDDIR»/src/program' make[3]: Leaving directory '/«PKGBUILDDIR»/src/program' Making all in util make[3]: Entering directory '/«PKGBUILDDIR»/src/util' gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o fastaclean.o fastaclean.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o fastaclean fastaclean.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o fastaclip.o fastaclip.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o fastaclip fastaclip.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o fastachecksum.o fastachecksum.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o fastachecksum fastachecksum.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o fastacomposition.o fastacomposition.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o fastacomposition fastacomposition.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o fastadiff.o fastadiff.c fastadiff.c: In function ‘fasta_diff’: fastadiff.c:70:13: warning: ‘g_strcasecmp’ is deprecated [-Wdeprecated-declarations] comp = g_strcasecmp; ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from ../../src/general/argument.h:26, from fastadiff.c:19: /usr/include/glib-2.0/glib/gstrfuncs.h:200:23: note: declared here gint g_strcasecmp (const gchar *s1, ^ gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o fastadiff fastadiff.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o fastaexplode.o fastaexplode.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o fastaexplode fastaexplode.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o fastafetch.o fastafetch.c fastafetch.c: In function ‘get_query_list’: fastafetch.c:121:5: warning: ‘g_strcasecmp’ is deprecated [-Wdeprecated-declarations] if(!g_strcasecmp(query, "stdin")){ ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from ../../src/general/argument.h:26, from fastafetch.c:21: /usr/include/glib-2.0/glib/gstrfuncs.h:200:23: note: declared here gint g_strcasecmp (const gchar *s1, ^ gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o fastafetch fastafetch.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o fastahardmask.o fastahardmask.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o fastahardmask fastahardmask.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o fastaindex.o fastaindex.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o fastaindex fastaindex.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o fastalength.o fastalength.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o fastalength fastalength.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o fastanrdb.o fastanrdb.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o fastanrdb fastanrdb.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o fastaoverlap.o fastaoverlap.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o fastaoverlap fastaoverlap.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o fastareformat.o fastareformat.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o fastareformat fastareformat.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o fastaremove.o fastaremove.c fastaremove.c: In function ‘Argument_main’: fastaremove.c:73:5: warning: ‘g_strcasecmp’ is deprecated [-Wdeprecated-declarations] if(!g_strcasecmp(remove_path, "stdin")){ ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from ../../src/general/argument.h:26, from fastaremove.c:19: /usr/include/glib-2.0/glib/gstrfuncs.h:200:23: note: declared here gint g_strcasecmp (const gchar *s1, ^ gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o fastaremove fastaremove.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o fastarevcomp.o fastarevcomp.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o fastarevcomp fastarevcomp.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o fastasoftmask.o fastasoftmask.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o fastasoftmask fastasoftmask.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o fastasort.o fastasort.c fastasort.c: In function ‘SortKey_Mask_create’: fastasort.c:130:5: warning: ‘g_strcasecmp’ is deprecated [-Wdeprecated-declarations] if(!g_strcasecmp(sort_key, "id")) ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from ../../src/general/argument.h:26, from fastasort.c:20: /usr/include/glib-2.0/glib/gstrfuncs.h:200:23: note: declared here gint g_strcasecmp (const gchar *s1, ^ fastasort.c:132:5: warning: ‘g_strcasecmp’ is deprecated [-Wdeprecated-declarations] else if(!g_strcasecmp(sort_key, "len")) ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from ../../src/general/argument.h:26, from fastasort.c:20: /usr/include/glib-2.0/glib/gstrfuncs.h:200:23: note: declared here gint g_strcasecmp (const gchar *s1, ^ fastasort.c:134:5: warning: ‘g_strcasecmp’ is deprecated [-Wdeprecated-declarations] else if(!g_strcasecmp(sort_key, "seq")) ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from ../../src/general/argument.h:26, from fastasort.c:20: /usr/include/glib-2.0/glib/gstrfuncs.h:200:23: note: declared here gint g_strcasecmp (const gchar *s1, ^ gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o fastasort fastasort.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o fastasplit.o fastasplit.c fastasplit.c: In function ‘Argument_main’: fastasplit.c:92:13: warning: ‘g_basename’ is deprecated: Use 'g_path_get_basename' instead [-Wdeprecated-declarations] output_dir, G_DIR_SEPARATOR, g_basename(query_path)); ^ In file included from /usr/include/glib-2.0/glib.h:48:0, from ../../src/general/argument.h:26, from fastasplit.c:20: /usr/include/glib-2.0/glib/gfileutils.h:168:14: note: declared here const gchar *g_basename (const gchar *file_name); ^ gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o fastasplit fastasplit.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o fastasubseq.o fastasubseq.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o fastasubseq fastasubseq.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o fastatranslate.o fastatranslate.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o fastatranslate fastatranslate.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o fastavalidcds.o fastavalidcds.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o fastavalidcds fastavalidcds.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o fasta2esd.o fasta2esd.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o fasta2esd fasta2esd.o ../../src/database/dataset.o ../../src/struct/bitarray.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o fastaannotatecdna.o fastaannotatecdna.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o fastaannotatecdna fastaannotatecdna.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o esd2esi.o esd2esi.c gcc -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o esd2esi esd2esi.o ../../src/database/dataset.o ../../src/database/index.o ../../src/general/threadref.o ../../src/struct/bitarray.o ../../src/struct/vfsm.o ../../src/struct/pqueue.o ../../src/struct/recyclebin.o ../../src/struct/rangetree.o ../../src/struct/noitree.o ../../src/struct/splaytree.o ../../src/sequence/submat.o ../../src/sequence/codonsubmat.o ../../src/comparison/wordhood.o ../../src/comparison/hspset.o ../../src/comparison/match.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 make[3]: Leaving directory '/«PKGBUILDDIR»/src/util' make[3]: Entering directory '/«PKGBUILDDIR»/src' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/«PKGBUILDDIR»/src' make[2]: Leaving directory '/«PKGBUILDDIR»/src' Making all in test make[2]: Entering directory '/«PKGBUILDDIR»/test' Making all in data make[3]: Entering directory '/«PKGBUILDDIR»/test/data' Making all in cdna make[4]: Entering directory '/«PKGBUILDDIR»/test/data/cdna' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/«PKGBUILDDIR»/test/data/cdna' Making all in protein make[4]: Entering directory '/«PKGBUILDDIR»/test/data/protein' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/«PKGBUILDDIR»/test/data/protein' make[4]: Entering directory '/«PKGBUILDDIR»/test/data' make[4]: Nothing to be done for 'all-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/test/data' make[3]: Leaving directory '/«PKGBUILDDIR»/test/data' Making all in exonerate make[3]: Entering directory '/«PKGBUILDDIR»/test/exonerate' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/«PKGBUILDDIR»/test/exonerate' Making all in ipcress make[3]: Entering directory '/«PKGBUILDDIR»/test/ipcress' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/«PKGBUILDDIR»/test/ipcress' Making all in util make[3]: Entering directory '/«PKGBUILDDIR»/test/util' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/«PKGBUILDDIR»/test/util' make[3]: Entering directory '/«PKGBUILDDIR»/test' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/«PKGBUILDDIR»/test' make[2]: Leaving directory '/«PKGBUILDDIR»/test' make[2]: Entering directory '/«PKGBUILDDIR»' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/«PKGBUILDDIR»' make[1]: Leaving directory '/«PKGBUILDDIR»' debian/rules override_dh_auto_test make[1]: Entering directory '/«PKGBUILDDIR»' /usr/bin/make -C test check make[2]: Entering directory '/«PKGBUILDDIR»/test' Making check in data make[3]: Entering directory '/«PKGBUILDDIR»/test/data' Making check in cdna make[4]: Entering directory '/«PKGBUILDDIR»/test/data/cdna' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/«PKGBUILDDIR»/test/data/cdna' Making check in protein make[4]: Entering directory '/«PKGBUILDDIR»/test/data/protein' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/«PKGBUILDDIR»/test/data/protein' make[4]: Entering directory '/«PKGBUILDDIR»/test/data' make[4]: Nothing to be done for 'check-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/test/data' make[3]: Leaving directory '/«PKGBUILDDIR»/test/data' Making check in exonerate make[3]: Entering directory '/«PKGBUILDDIR»/test/exonerate' /usr/bin/make check-TESTS make[4]: Entering directory '/«PKGBUILDDIR»/test/exonerate' make[5]: Entering directory '/«PKGBUILDDIR»/test/exonerate' PASS: exonerate.simple.test.sh ============================================================================ Testsuite summary for ============================================================================ # TOTAL: 1 # PASS: 1 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[5]: Leaving directory '/«PKGBUILDDIR»/test/exonerate' make[4]: Leaving directory '/«PKGBUILDDIR»/test/exonerate' make[3]: Leaving directory '/«PKGBUILDDIR»/test/exonerate' Making check in ipcress make[3]: Entering directory '/«PKGBUILDDIR»/test/ipcress' /usr/bin/make check-TESTS make[4]: Entering directory '/«PKGBUILDDIR»/test/ipcress' make[5]: Entering directory '/«PKGBUILDDIR»/test/ipcress' PASS: ipcress.simple.test.sh ============================================================================ Testsuite summary for ============================================================================ # TOTAL: 1 # PASS: 1 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[5]: Leaving directory '/«PKGBUILDDIR»/test/ipcress' make[4]: Leaving directory '/«PKGBUILDDIR»/test/ipcress' make[3]: Leaving directory '/«PKGBUILDDIR»/test/ipcress' Making check in util make[3]: Entering directory '/«PKGBUILDDIR»/test/util' /usr/bin/make check-TESTS make[4]: Entering directory '/«PKGBUILDDIR»/test/util' make[5]: Entering directory '/«PKGBUILDDIR»/test/util' PASS: fastaclean.test.sh PASS: fastaclip.test.sh PASS: fastacomposition.test.sh PASS: fastadiff.test.sh PASS: fastaexpode.test.sh PASS: fastaindex.fastafetch.test.sh PASS: fastalength.test.sh PASS: fastanrdb.test.sh PASS: fastaoverlap.test.sh PASS: fastarefomat.test.sh PASS: fastaremove.test.sh PASS: fastarevcomp.test.sh PASS: fastasoftmask.fastahardmask.test.sh PASS: fastasort.test.sh PASS: fastasplit.test.sh PASS: fastasubseq.test.sh PASS: fastatranslate.test.sh PASS: fastavalidcds.test.sh ============================================================================ Testsuite summary for ============================================================================ # TOTAL: 18 # PASS: 18 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[5]: Leaving directory '/«PKGBUILDDIR»/test/util' make[4]: Leaving directory '/«PKGBUILDDIR»/test/util' make[3]: Leaving directory '/«PKGBUILDDIR»/test/util' make[3]: Entering directory '/«PKGBUILDDIR»/test' make[3]: Nothing to be done for 'check-am'. make[3]: Leaving directory '/«PKGBUILDDIR»/test' make[2]: Leaving directory '/«PKGBUILDDIR»/test' make[1]: Leaving directory '/«PKGBUILDDIR»' fakeroot debian/rules binary-arch dh binary-arch --with autoreconf dh_testroot -a dh_prep -a dh_auto_install -a make -j1 install DESTDIR=/«PKGBUILDDIR»/debian/exonerate AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/«PKGBUILDDIR»' Making install in doc make[2]: Entering directory '/«PKGBUILDDIR»/doc' Making install in man make[3]: Entering directory '/«PKGBUILDDIR»/doc/man' Making install in man1 make[4]: Entering directory '/«PKGBUILDDIR»/doc/man/man1' make[5]: Entering directory '/«PKGBUILDDIR»/doc/man/man1' make[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/«PKGBUILDDIR»/debian/exonerate/usr/share/man/man1' /usr/bin/install -c -m 644 exonerate.1 ipcress.1 exonerate-server.1 fastautils.1 '/«PKGBUILDDIR»/debian/exonerate/usr/share/man/man1' make[5]: Leaving directory '/«PKGBUILDDIR»/doc/man/man1' make[4]: Leaving directory '/«PKGBUILDDIR»/doc/man/man1' make[4]: Entering directory '/«PKGBUILDDIR»/doc/man' make[5]: Entering directory '/«PKGBUILDDIR»/doc/man' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/«PKGBUILDDIR»/doc/man' make[4]: Leaving directory '/«PKGBUILDDIR»/doc/man' make[3]: Leaving directory '/«PKGBUILDDIR»/doc/man' make[3]: Entering directory '/«PKGBUILDDIR»/doc' make[4]: Entering directory '/«PKGBUILDDIR»/doc' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/doc' make[3]: Leaving directory '/«PKGBUILDDIR»/doc' make[2]: Leaving directory '/«PKGBUILDDIR»/doc' Making install in src make[2]: Entering directory '/«PKGBUILDDIR»/src' Making install in struct make[3]: Entering directory '/«PKGBUILDDIR»/src/struct' make[4]: Entering directory '/«PKGBUILDDIR»/src/struct' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/src/struct' make[3]: Leaving directory '/«PKGBUILDDIR»/src/struct' Making install in general make[3]: Entering directory '/«PKGBUILDDIR»/src/general' make[4]: Entering directory '/«PKGBUILDDIR»/src/general' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/src/general' make[3]: Leaving directory '/«PKGBUILDDIR»/src/general' Making install in sequence make[3]: Entering directory '/«PKGBUILDDIR»/src/sequence' make[4]: Entering directory '/«PKGBUILDDIR»/src/sequence' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/src/sequence' make[3]: Leaving directory '/«PKGBUILDDIR»/src/sequence' Making install in comparison make[3]: Entering directory '/«PKGBUILDDIR»/src/comparison' make[4]: Entering directory '/«PKGBUILDDIR»/src/comparison' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/src/comparison' make[3]: Leaving directory '/«PKGBUILDDIR»/src/comparison' Making install in database make[3]: Entering directory '/«PKGBUILDDIR»/src/database' make[4]: Entering directory '/«PKGBUILDDIR»/src/database' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/src/database' make[3]: Leaving directory '/«PKGBUILDDIR»/src/database' Making install in c4 make[3]: Entering directory '/«PKGBUILDDIR»/src/c4' make[4]: Entering directory '/«PKGBUILDDIR»/src/c4' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/src/c4' make[3]: Leaving directory '/«PKGBUILDDIR»/src/c4' Making install in bsdp make[3]: Entering directory '/«PKGBUILDDIR»/src/bsdp' make[4]: Entering directory '/«PKGBUILDDIR»/src/bsdp' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/src/bsdp' make[3]: Leaving directory '/«PKGBUILDDIR»/src/bsdp' Making install in sdp make[3]: Entering directory '/«PKGBUILDDIR»/src/sdp' make[4]: Entering directory '/«PKGBUILDDIR»/src/sdp' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/src/sdp' make[3]: Leaving directory '/«PKGBUILDDIR»/src/sdp' Making install in model make[3]: Entering directory '/«PKGBUILDDIR»/src/model' make[4]: Entering directory '/«PKGBUILDDIR»/src/model' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/src/model' make[3]: Leaving directory '/«PKGBUILDDIR»/src/model' Making install in hub make[3]: Entering directory '/«PKGBUILDDIR»/src/hub' make[4]: Entering directory '/«PKGBUILDDIR»/src/hub' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/src/hub' make[3]: Leaving directory '/«PKGBUILDDIR»/src/hub' Making install in program make[3]: Entering directory '/«PKGBUILDDIR»/src/program' make install-am make[4]: Entering directory '/«PKGBUILDDIR»/src/program' make[5]: Entering directory '/«PKGBUILDDIR»/src/program' /bin/mkdir -p '/«PKGBUILDDIR»/debian/exonerate/usr/bin' /usr/bin/install -c exonerate ipcress exonerate-server '/«PKGBUILDDIR»/debian/exonerate/usr/bin' make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/«PKGBUILDDIR»/src/program' make[4]: Leaving directory '/«PKGBUILDDIR»/src/program' make[3]: Leaving directory '/«PKGBUILDDIR»/src/program' Making install in util make[3]: Entering directory '/«PKGBUILDDIR»/src/util' make[4]: Entering directory '/«PKGBUILDDIR»/src/util' /bin/mkdir -p '/«PKGBUILDDIR»/debian/exonerate/usr/bin' /usr/bin/install -c fastaclean fastaclip fastachecksum fastacomposition fastadiff fastaexplode fastafetch fastahardmask fastaindex fastalength fastanrdb fastaoverlap fastareformat fastaremove fastarevcomp fastasoftmask fastasort fastasplit fastasubseq fastatranslate fastavalidcds fasta2esd fastaannotatecdna esd2esi '/«PKGBUILDDIR»/debian/exonerate/usr/bin' make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/src/util' make[3]: Leaving directory '/«PKGBUILDDIR»/src/util' make[3]: Entering directory '/«PKGBUILDDIR»/src' make[4]: Entering directory '/«PKGBUILDDIR»/src' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/src' make[3]: Leaving directory '/«PKGBUILDDIR»/src' make[2]: Leaving directory '/«PKGBUILDDIR»/src' Making install in test make[2]: Entering directory '/«PKGBUILDDIR»/test' Making install in data make[3]: Entering directory '/«PKGBUILDDIR»/test/data' Making install in cdna make[4]: Entering directory '/«PKGBUILDDIR»/test/data/cdna' make[5]: Entering directory '/«PKGBUILDDIR»/test/data/cdna' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/«PKGBUILDDIR»/test/data/cdna' make[4]: Leaving directory '/«PKGBUILDDIR»/test/data/cdna' Making install in protein make[4]: Entering directory '/«PKGBUILDDIR»/test/data/protein' make[5]: Entering directory '/«PKGBUILDDIR»/test/data/protein' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/«PKGBUILDDIR»/test/data/protein' make[4]: Leaving directory '/«PKGBUILDDIR»/test/data/protein' make[4]: Entering directory '/«PKGBUILDDIR»/test/data' make[5]: Entering directory '/«PKGBUILDDIR»/test/data' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/«PKGBUILDDIR»/test/data' make[4]: Leaving directory '/«PKGBUILDDIR»/test/data' make[3]: Leaving directory '/«PKGBUILDDIR»/test/data' Making install in exonerate make[3]: Entering directory '/«PKGBUILDDIR»/test/exonerate' make[4]: Entering directory '/«PKGBUILDDIR»/test/exonerate' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/test/exonerate' make[3]: Leaving directory '/«PKGBUILDDIR»/test/exonerate' Making install in ipcress make[3]: Entering directory '/«PKGBUILDDIR»/test/ipcress' make[4]: Entering directory '/«PKGBUILDDIR»/test/ipcress' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/test/ipcress' make[3]: Leaving directory '/«PKGBUILDDIR»/test/ipcress' Making install in util make[3]: Entering directory '/«PKGBUILDDIR»/test/util' make[4]: Entering directory '/«PKGBUILDDIR»/test/util' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/test/util' make[3]: Leaving directory '/«PKGBUILDDIR»/test/util' make[3]: Entering directory '/«PKGBUILDDIR»/test' make[4]: Entering directory '/«PKGBUILDDIR»/test' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/test' make[3]: Leaving directory '/«PKGBUILDDIR»/test' make[2]: Leaving directory '/«PKGBUILDDIR»/test' make[2]: Entering directory '/«PKGBUILDDIR»' make[3]: Entering directory '/«PKGBUILDDIR»' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/«PKGBUILDDIR»' make[2]: Leaving directory '/«PKGBUILDDIR»' make[1]: Leaving directory '/«PKGBUILDDIR»' dh_installdocs -a debian/rules override_dh_installchangelogs make[1]: Entering directory '/«PKGBUILDDIR»' dh_installchangelogs -k ChangeLog make[1]: Leaving directory '/«PKGBUILDDIR»' debian/rules override_dh_installexamples make[1]: Entering directory '/«PKGBUILDDIR»' dh_installexamples mkdir -p /«PKGBUILDDIR»/debian/exonerate/usr/share/doc/exonerate/examples; cp -a test/* /«PKGBUILDDIR»/debian/exonerate/usr/share/doc/exonerate/examples/; find /«PKGBUILDDIR»/debian/exonerate/usr/share/doc/exonerate/examples \( -name "Makefile*" -o -name "*.log" -o -name "*.trs" \) -exec rm \{\} \; for testfile in `find /«PKGBUILDDIR»/debian/exonerate/usr/share/doc/exonerate/examples -name "*.sh"` ; do \ sed -i -e "s#../../src/util/#/usr/bin/#" \ -e "s#../../src/program/#/usr/bin/#" \ -e "s#../data/#./data/#" \ ${testfile} ; \ done make[1]: Leaving directory '/«PKGBUILDDIR»' dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_strip -a dh_strip debug symbol extraction: enabling -a due to Build-Debug-Symbols: yes in /CurrentlyBuilding dh_strip debug symbol extraction: all non-arch-all packages for this build platform arm64: exonerate dh_strip debug symbol extraction: packages to act on: exonerate dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe /usr/bin/pkg_create_dbgsym: deferring build of .ddeb to dh_gencontrol dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_gencontrol debug symbol wrapper: all non-arch-all packages for this build platform arm64: exonerate dh_gencontrol debug symbol wrapper: packages to act on: exonerate dh_gencontrol debug symbol wrapper: ignored packages: dh_gencontrol debug symbol wrapper: processing package exonerate (pkgdir debian/exonerate, ddeb package dir debian/exonerate-dbgsym) dh_gencontrol debug symbol wrapper: building exonerate-dbgsym_2.4.0-2_arm64.ddeb dpkg-deb: building package 'exonerate-dbgsym' in '../exonerate-dbgsym_2.4.0-2_arm64.ddeb'. dh_gencontrol debug symbol wrapper: dpkg-distaddfile exonerate-dbgsym_2.4.0-2_arm64.ddeb science extra dpkg-distaddfile: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 129 pkgstriptranslations: processing exonerate (in debian/exonerate); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/exonerate/DEBIAN/control, package exonerate, directory debian/exonerate .. removing usr/share/doc/exonerate/changelog.gz pkgstripfiles: Truncating usr/share/doc/exonerate/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package exonerate ... pkgstripfiles: No PNG files. dpkg-deb: building package 'exonerate' in '../exonerate_2.4.0-2_arm64.deb'. dpkg-genchanges --build=any -mLaunchpad Build Daemon >../exonerate_2.4.0-2_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build exonerate-2.4.0 dpkg-buildpackage: info: binary-only upload (no source included) ──────────────────────────────────────────────────────────────────────────────── Build finished at 20160519-0542 Finished ──────── I: Built successfully ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build Chroot │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Changes │ └──────────────────────────────────────────────────────────────────────────────┘ exonerate_2.4.0-2_arm64.changes: ──────────────────────────────── Format: 1.8 Date: Wed, 18 May 2016 14:11:15 +0200 Source: exonerate Binary: exonerate Architecture: arm64 Version: 2.4.0-2 Distribution: yakkety-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Canberk Koç Description: exonerate - generic tool for pairwise sequence comparison Changes: exonerate (2.4.0-2) unstable; urgency=medium . [ Canberk Koç ] * Team upload * debian/tests: added testsuite * debian/rules: changes for testing . [ Andreas Tille ] * cme fix dpkg-control Checksums-Sha1: 1db63809ce756579cea192d410b81cef1df2fd52 2615626 exonerate-dbgsym_2.4.0-2_arm64.ddeb 666cef8c5d4ee17ee1687d5d45986491a26064f9 1282284 exonerate_2.4.0-2_arm64.deb Checksums-Sha256: ec55014bece4e3a7c66e8977e0978dca0470f58fc3ddebf0bf0eb1096502a279 2615626 exonerate-dbgsym_2.4.0-2_arm64.ddeb 833465fbbfcb677955feaa812a08bf5fb558bf144897153a42c1eb1a26b91903 1282284 exonerate_2.4.0-2_arm64.deb Files: 4089d37afa638abf146f1e501a84e4fd 2615626 science extra exonerate-dbgsym_2.4.0-2_arm64.ddeb 7bd816d6de3f77a1a6255b213da4a668 1282284 science optional exonerate_2.4.0-2_arm64.deb ┌──────────────────────────────────────────────────────────────────────────────┐ │ Package contents │ └──────────────────────────────────────────────────────────────────────────────┘ exonerate_2.4.0-2_arm64.deb ─────────────────────────── new debian package, version 2.0. size 1282284 bytes: control archive=2800 bytes. 1210 bytes, 26 lines control 4925 bytes, 66 lines md5sums Package: exonerate Version: 2.4.0-2 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 8369 Depends: libc6 (>= 2.17), libglib2.0-0 (>= 2.24.0) Suggests: wise Enhances: bioperl-run Section: science Priority: optional Homepage: https://www.ebi.ac.uk/about/vertebrate-genomics/software/exonerate Description: generic tool for pairwise sequence comparison Exonerate allows you to align sequences using a many alignment models, using either exhaustive dynamic programming, or a variety of heuristics. Much of the functionality of the Wise dynamic programming suite was reimplemented in C for better efficiency. Exonerate is an intrinsic component of the building of the Ensembl genome databases, providing similarity scores between RNA and DNA sequences and thus determining splice variants and coding sequences in general. . An In-silico PCR Experiment Simulation System (see the ipcress man page) is packaged with exonerate. . This package also comes with a selection of utilities for performing simple manipulations quickly on fasta files beyond 2Gb drwxr-xr-x root/root 0 2016-05-19 05:42 ./ drwxr-xr-x root/root 0 2016-05-19 05:42 ./usr/ drwxr-xr-x root/root 0 2016-05-19 05:42 ./usr/bin/ -rwxr-xr-x root/root 217432 2016-05-19 05:42 ./usr/bin/esd2esi -rwxr-xr-x root/root 5292696 2016-05-19 05:42 ./usr/bin/exonerate -rwxr-xr-x root/root 233816 2016-05-19 05:42 ./usr/bin/exonerate-server -rwxr-xr-x root/root 117336 2016-05-19 05:42 ./usr/bin/fasta2esd -rwxr-xr-x root/root 109144 2016-05-19 05:42 ./usr/bin/fastaannotatecdna -rwxr-xr-x root/root 109144 2016-05-19 05:42 ./usr/bin/fastachecksum -rwxr-xr-x root/root 109144 2016-05-19 05:42 ./usr/bin/fastaclean -rwxr-xr-x root/root 109144 2016-05-19 05:42 ./usr/bin/fastaclip -rwxr-xr-x root/root 109144 2016-05-19 05:42 ./usr/bin/fastacomposition -rwxr-xr-x root/root 109144 2016-05-19 05:42 ./usr/bin/fastadiff -rwxr-xr-x root/root 109144 2016-05-19 05:42 ./usr/bin/fastaexplode -rwxr-xr-x root/root 109144 2016-05-19 05:42 ./usr/bin/fastafetch -rwxr-xr-x root/root 109144 2016-05-19 05:42 ./usr/bin/fastahardmask -rwxr-xr-x root/root 109144 2016-05-19 05:42 ./usr/bin/fastaindex -rwxr-xr-x root/root 109144 2016-05-19 05:42 ./usr/bin/fastalength -rwxr-xr-x root/root 109144 2016-05-19 05:42 ./usr/bin/fastanrdb -rwxr-xr-x root/root 109144 2016-05-19 05:42 ./usr/bin/fastaoverlap -rwxr-xr-x root/root 109144 2016-05-19 05:42 ./usr/bin/fastareformat -rwxr-xr-x root/root 109144 2016-05-19 05:42 ./usr/bin/fastaremove -rwxr-xr-x root/root 109144 2016-05-19 05:42 ./usr/bin/fastarevcomp -rwxr-xr-x root/root 109144 2016-05-19 05:42 ./usr/bin/fastasoftmask -rwxr-xr-x root/root 113240 2016-05-19 05:42 ./usr/bin/fastasort -rwxr-xr-x root/root 109144 2016-05-19 05:42 ./usr/bin/fastasplit -rwxr-xr-x root/root 109144 2016-05-19 05:42 ./usr/bin/fastasubseq -rwxr-xr-x root/root 109144 2016-05-19 05:42 ./usr/bin/fastatranslate -rwxr-xr-x root/root 109144 2016-05-19 05:42 ./usr/bin/fastavalidcds -rwxr-xr-x root/root 164184 2016-05-19 05:42 ./usr/bin/ipcress drwxr-xr-x root/root 0 2016-05-19 05:42 ./usr/share/ drwxr-xr-x root/root 0 2016-05-19 05:42 ./usr/share/doc/ drwxr-xr-x root/root 0 2016-05-19 05:42 ./usr/share/doc/exonerate/ -rw-r--r-- root/root 568 2008-07-10 11:35 ./usr/share/doc/exonerate/AUTHORS lrwxrwxrwx root/root 0 2016-05-19 05:42 ./usr/share/doc/exonerate/ChangeLog.gz -> changelog.gz -rw-r--r-- root/root 3603 2008-02-08 19:46 ./usr/share/doc/exonerate/README.gz -rw-r--r-- root/root 4001 2006-02-06 12:01 ./usr/share/doc/exonerate/TODO.gz -rw-r--r-- root/root 1646 2016-05-19 05:42 ./usr/share/doc/exonerate/changelog.Debian.gz -rw-r--r-- root/root 1615 2016-05-18 12:12 ./usr/share/doc/exonerate/copyright drwxr-xr-x root/root 0 2016-05-19 05:42 ./usr/share/doc/exonerate/examples/ drwxr-xr-x root/root 0 2016-05-19 05:42 ./usr/share/doc/exonerate/examples/data/ drwxr-xr-x root/root 0 2016-05-19 05:42 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./usr/share/man/man1/fastaindex.1.gz -> fastaoverlap.1.gz lrwxrwxrwx root/root 0 2016-05-19 05:42 ./usr/share/man/man1/fastalength.1.gz -> fastaoverlap.1.gz lrwxrwxrwx root/root 0 2016-05-19 05:42 ./usr/share/man/man1/fastanrdb.1.gz -> fastaoverlap.1.gz -rw-r--r-- root/root 1025 2016-05-19 05:42 ./usr/share/man/man1/fastaoverlap.1.gz lrwxrwxrwx root/root 0 2016-05-19 05:42 ./usr/share/man/man1/fastareformat.1.gz -> fastaoverlap.1.gz lrwxrwxrwx root/root 0 2016-05-19 05:42 ./usr/share/man/man1/fastaremove.1.gz -> fastaoverlap.1.gz lrwxrwxrwx root/root 0 2016-05-19 05:42 ./usr/share/man/man1/fastarevcomp.1.gz -> fastaoverlap.1.gz lrwxrwxrwx root/root 0 2016-05-19 05:42 ./usr/share/man/man1/fastasoftmask.1.gz -> fastaoverlap.1.gz lrwxrwxrwx root/root 0 2016-05-19 05:42 ./usr/share/man/man1/fastasort.1.gz -> fastaoverlap.1.gz lrwxrwxrwx root/root 0 2016-05-19 05:42 ./usr/share/man/man1/fastasplit.1.gz -> fastaoverlap.1.gz lrwxrwxrwx root/root 0 2016-05-19 05:42 ./usr/share/man/man1/fastasubseq.1.gz -> fastaoverlap.1.gz lrwxrwxrwx root/root 0 2016-05-19 05:42 ./usr/share/man/man1/fastatranslate.1.gz -> fastaoverlap.1.gz -rw-r--r-- root/root 739 2016-05-19 05:42 ./usr/share/man/man1/fastautils.1.gz lrwxrwxrwx root/root 0 2016-05-19 05:42 ./usr/share/man/man1/fastavalidcds.1.gz -> fastaoverlap.1.gz -rw-r--r-- root/root 2569 2016-05-19 05:42 ./usr/share/man/man1/ipcress.1.gz ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Not removing build depends: as requested Keeping session: ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Build Architecture: arm64 Build-Space: 157144 Build-Time: 1619 Distribution: yakkety-proposed Host Architecture: arm64 Install-Time: 21 Job: exonerate_2.4.0-2.dsc Machine Architecture: arm64 Package: exonerate Package-Time: 1641 Source-Version: 2.4.0-2 Space: 157144 Status: successful Version: 2.4.0-2 ──────────────────────────────────────────────────────────────────────────────── Finished at 20160519-0542 Build needed 00:27:21, 157144k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-9769119'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-9769119/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-9769119'] Unmounting chroot for build PACKAGEBUILD-9769119... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-9769119'] Removing build PACKAGEBUILD-9769119