RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux bos01-arm64-006 3.19.0-31-generic #36-Ubuntu SMP Wed Oct 7 15:08:43 UTC 2015 aarch64 Buildd toolchain package versions: launchpad-buildd_135 python-lpbuildd_135 sbuild_0.65.2-1ubuntu2+ppa1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.6.0+bzr6595-6ubuntu1 dpkg-dev_1.17.25ubuntu1 python-debian_0.1.27ubuntu1~ubuntu14.04.1~ppa1. Syncing the system clock with the buildd NTP service... 11 Jan 23:11:35 ntpdate[15415]: adjust time server 10.211.37.1 offset 0.038659 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-8834663', '/home/buildd/filecache-default/e4334328d0a439a5c9a1262cdf1f64d583863c1f'] Unpacking chroot for build PACKAGEBUILD-8834663 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-8834663'] Mounting chroot for build PACKAGEBUILD-8834663 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-8834663', 'deb http://ftpmaster.internal/ubuntu xenial main universe', 'deb http://ftpmaster.internal/ubuntu xenial-security main universe', 'deb http://ftpmaster.internal/ubuntu xenial-updates main universe', 'deb http://ftpmaster.internal/ubuntu xenial-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-8834663 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-8834663', 'arm64'] Updating debian chroot for build PACKAGEBUILD-8834663 Get:1 http://ftpmaster.internal xenial InRelease [227 kB] Get:2 http://ftpmaster.internal xenial-security InRelease [73.5 kB] Get:3 http://ftpmaster.internal xenial-updates InRelease [73.5 kB] Get:4 http://ftpmaster.internal xenial-proposed InRelease [227 kB] Get:5 http://ftpmaster.internal xenial/main arm64 Packages [1420 kB] Get:6 http://ftpmaster.internal xenial/universe arm64 Packages [6928 kB] Get:7 http://ftpmaster.internal xenial/main Translation-en [850 kB] Get:8 http://ftpmaster.internal xenial/universe Translation-en [4787 kB] Get:9 http://ftpmaster.internal xenial-security/main arm64 Packages [28 B] Get:10 http://ftpmaster.internal xenial-security/universe arm64 Packages [28 B] Get:11 http://ftpmaster.internal xenial-security/main Translation-en [28 B] Get:12 http://ftpmaster.internal xenial-security/universe Translation-en [28 B] Get:13 http://ftpmaster.internal xenial-updates/main arm64 Packages [28 B] Get:14 http://ftpmaster.internal xenial-updates/universe arm64 Packages [28 B] Get:15 http://ftpmaster.internal xenial-updates/main Translation-en [28 B] Get:16 http://ftpmaster.internal xenial-updates/universe Translation-en [28 B] Get:17 http://ftpmaster.internal xenial-proposed/main arm64 Packages [41.2 kB] Get:18 http://ftpmaster.internal xenial-proposed/universe arm64 Packages [269 kB] Get:19 http://ftpmaster.internal xenial-proposed/main Translation-en [27.2 kB] Get:20 http://ftpmaster.internal xenial-proposed/universe Translation-en [148 kB] Fetched 15.1 MB in 13s (1099 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libapt-pkg4.16 libisl13 libprocps3 udev Use 'apt-get autoremove' to remove them. The following packages will be REMOVED: perl-modules* The following NEW packages will be installed: libapt-pkg5.0 libisl15 libperl5.22 libprocps4 perl-modules-5.22 The following packages will be upgraded: advancecomp apt apt-transport-https base-files base-passwd binutils bsdutils cpp cpp-5 debconf diffutils dmsetup dpkg dpkg-dev e2fslibs e2fsprogs findutils g++ g++-5 gcc gcc-5 gcc-5-base gnupg gpgv grep hostname init initscripts libapparmor1 libasan2 libatomic1 libaudit-common libaudit1 libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap2 libcap2-bin libcc1-0 libcomerr2 libcurl3-gnutls libdbus-1-3 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libfdisk1 libffi6 libgcc-5-dev libgcc1 libgcrypt20 libgmp10 libgnutls-deb0-28 libgomp1 libgpg-error0 libgssapi-krb5-2 libidn11 libitm1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libmount1 libmpfr4 libncurses5 libncursesw5 libnih-dbus1 libnih1 libp11-kit0 libpng12-0 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libsmartcols1 libsqlite3-0 libss2 libssl1.0.0 libstdc++-5-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo5 libubsan0 libudev1 libusb-0.1-4 libuuid1 linux-libc-dev lsb-base mount multiarch-support ncurses-base ncurses-bin openssl perl perl-base pkg-create-dbgsym pkgbinarymangler procps systemd systemd-sysv sysv-rc sysvinit-utils tar udev util-linux 109 upgraded, 5 newly installed, 1 to remove and 0 not upgraded. Need to get 110 MB of archives. After this operation, 307 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ xenial/main base-files arm64 9.4ubuntu3 [68.5 kB] Get:2 http://ftpmaster.internal/ubuntu/ xenial/main bsdutils arm64 1:2.27.1-1ubuntu3 [49.0 kB] Get:3 http://ftpmaster.internal/ubuntu/ xenial/main diffutils arm64 1:3.3-3 [144 kB] Get:4 http://ftpmaster.internal/ubuntu/ xenial/main dpkg arm64 1.18.3ubuntu1 [2038 kB] Get:5 http://ftpmaster.internal/ubuntu/ xenial/main libc6-dev arm64 2.21-0ubuntu5 [1677 kB] Get:6 http://ftpmaster.internal/ubuntu/ xenial/main libc-dev-bin arm64 2.21-0ubuntu5 [58.8 kB] Get:7 http://ftpmaster.internal/ubuntu/ xenial/main linux-libc-dev arm64 4.3.0-5.16 [793 kB] Get:8 http://ftpmaster.internal/ubuntu/ xenial/main libcap2 arm64 1:2.24-12 [12.0 kB] Get:9 http://ftpmaster.internal/ubuntu/ xenial/main libc-bin arm64 2.21-0ubuntu5 [1035 kB] Get:10 http://ftpmaster.internal/ubuntu/ xenial/main libgomp1 arm64 5.3.1-5ubuntu2 [45.7 kB] Get:11 http://ftpmaster.internal/ubuntu/ xenial/main libitm1 arm64 5.3.1-5ubuntu2 [23.9 kB] Get:12 http://ftpmaster.internal/ubuntu/ xenial/main libatomic1 arm64 5.3.1-5ubuntu2 [6384 B] Get:13 http://ftpmaster.internal/ubuntu/ xenial/main libasan2 arm64 5.3.1-5ubuntu2 [232 kB] Get:14 http://ftpmaster.internal/ubuntu/ xenial/main gcc-5-base arm64 5.3.1-5ubuntu2 [16.5 kB] Get:15 http://ftpmaster.internal/ubuntu/ xenial/main libgcc1 arm64 1:5.3.1-5ubuntu2 [30.8 kB] Get:16 http://ftpmaster.internal/ubuntu/ xenial/main libubsan0 arm64 5.3.1-5ubuntu2 [88.3 kB] Get:17 http://ftpmaster.internal/ubuntu/ xenial/main libisl15 arm64 0.15-3 [393 kB] Get:18 http://ftpmaster.internal/ubuntu/ xenial/main cpp-5 arm64 5.3.1-5ubuntu2 [23.3 MB] Get:19 http://ftpmaster.internal/ubuntu/ xenial/main libcc1-0 arm64 5.3.1-5ubuntu2 [27.2 kB] Get:20 http://ftpmaster.internal/ubuntu/ xenial/main binutils arm64 2.25.90.20160101-1ubuntu2 [2444 kB] Get:21 http://ftpmaster.internal/ubuntu/ xenial/main g++-5 arm64 5.3.1-5ubuntu2 [25.0 MB] Get:22 http://ftpmaster.internal/ubuntu/ xenial/main gcc-5 arm64 5.3.1-5ubuntu2 [23.5 MB] Get:23 http://ftpmaster.internal/ubuntu/ xenial/main libgcc-5-dev arm64 5.3.1-5ubuntu2 [494 kB] Get:24 http://ftpmaster.internal/ubuntu/ xenial/main libstdc++-5-dev arm64 5.3.1-5ubuntu2 [1371 kB] Get:25 http://ftpmaster.internal/ubuntu/ xenial/main libstdc++6 arm64 5.3.1-5ubuntu2 [362 kB] Get:26 http://ftpmaster.internal/ubuntu/ xenial/main libgmp10 arm64 2:6.1.0+dfsg-2 [202 kB] Get:27 http://ftpmaster.internal/ubuntu/ xenial/main libmpfr4 arm64 3.1.3-2 [172 kB] Get:28 http://ftpmaster.internal/ubuntu/ xenial/main libc6 arm64 2.21-0ubuntu5 [4077 kB] Get:29 http://ftpmaster.internal/ubuntu/ xenial/main e2fslibs arm64 1.42.13-1ubuntu1 [169 kB] Get:30 http://ftpmaster.internal/ubuntu/ xenial/main e2fsprogs arm64 1.42.13-1ubuntu1 [744 kB] Get:31 http://ftpmaster.internal/ubuntu/ xenial/main findutils arm64 4.4.2-10 [258 kB] Get:32 http://ftpmaster.internal/ubuntu/ xenial-proposed/main grep arm64 2.22-1 [135 kB] Get:33 http://ftpmaster.internal/ubuntu/ xenial/main hostname arm64 3.16ubuntu2 [11.2 kB] Get:34 http://ftpmaster.internal/ubuntu/ xenial/main init arm64 1.24ubuntu2 [3964 B] Get:35 http://ftpmaster.internal/ubuntu/ xenial/main libsmartcols1 arm64 2.27.1-1ubuntu3 [52.2 kB] Get:36 http://ftpmaster.internal/ubuntu/ xenial/main libuuid1 arm64 2.27.1-1ubuntu3 [14.0 kB] Get:37 http://ftpmaster.internal/ubuntu/ xenial/main libblkid1 arm64 2.27.1-1ubuntu3 [87.5 kB] Get:38 http://ftpmaster.internal/ubuntu/ xenial/main libfdisk1 arm64 2.27.1-1ubuntu3 [113 kB] Get:39 http://ftpmaster.internal/ubuntu/ xenial/main debconf all 1.5.58ubuntu1 [136 kB] Get:40 http://ftpmaster.internal/ubuntu/ xenial/main sysvinit-utils arm64 2.88dsf-59.2ubuntu3 [25.1 kB] Get:41 http://ftpmaster.internal/ubuntu/ xenial/main sysv-rc all 2.88dsf-59.2ubuntu3 [36.1 kB] Get:42 http://ftpmaster.internal/ubuntu/ xenial/main initscripts arm64 2.88dsf-59.2ubuntu3 [24.7 kB] Get:43 http://ftpmaster.internal/ubuntu/ xenial/main util-linux arm64 2.27.1-1ubuntu3 [785 kB] Get:44 http://ftpmaster.internal/ubuntu/ xenial/main libudev1 arm64 228-3ubuntu1 [47.4 kB] Get:45 http://ftpmaster.internal/ubuntu/ xenial/main udev arm64 228-3ubuntu1 [925 kB] Get:46 http://ftpmaster.internal/ubuntu/ xenial/main libsystemd0 arm64 228-3ubuntu1 [163 kB] Get:47 http://ftpmaster.internal/ubuntu/ xenial/main systemd arm64 228-3ubuntu1 [2871 kB] Get:48 http://ftpmaster.internal/ubuntu/ xenial/main libselinux1 arm64 2.4-3 [46.4 kB] Get:49 http://ftpmaster.internal/ubuntu/ xenial/main libtinfo5 arm64 6.0+20151024-2ubuntu1 [66.5 kB] Get:50 http://ftpmaster.internal/ubuntu/ xenial/main libncurses5 arm64 6.0+20151024-2ubuntu1 [75.3 kB] Get:51 http://ftpmaster.internal/ubuntu/ xenial/main libncursesw5 arm64 6.0+20151024-2ubuntu1 [92.8 kB] Get:52 http://ftpmaster.internal/ubuntu/ xenial/main libprocps4 arm64 2:3.3.10-4ubuntu1 [28.7 kB] Get:53 http://ftpmaster.internal/ubuntu/ xenial/main procps arm64 2:3.3.10-4ubuntu1 [208 kB] Get:54 http://ftpmaster.internal/ubuntu/ xenial/main libapparmor1 arm64 2.10-0ubuntu10 [25.8 kB] Get:55 http://ftpmaster.internal/ubuntu/ xenial/main libaudit-common all 1:2.4.4-4ubuntu1 [3892 B] Get:56 http://ftpmaster.internal/ubuntu/ xenial/main libaudit1 arm64 1:2.4.4-4ubuntu1 [33.4 kB] Get:57 http://ftpmaster.internal/ubuntu/ xenial/main libmount1 arm64 2.27.1-1ubuntu3 [93.7 kB] Get:58 http://ftpmaster.internal/ubuntu/ xenial/main libseccomp2 arm64 2.2.3-2ubuntu3 [31.3 kB] Get:59 http://ftpmaster.internal/ubuntu/ xenial/main libcap2-bin arm64 1:2.24-12 [20.0 kB] Get:60 http://ftpmaster.internal/ubuntu/ xenial-proposed/main lsb-base all 9.20160110 [13.5 kB] Get:61 http://ftpmaster.internal/ubuntu/ xenial/main mount arm64 2.27.1-1ubuntu3 [115 kB] Get:62 http://ftpmaster.internal/ubuntu/ xenial/main ncurses-bin arm64 6.0+20151024-2ubuntu1 [130 kB] Get:63 http://ftpmaster.internal/ubuntu/ xenial/main perl-modules-5.22 all 5.22.1-3 [2648 kB] Get:64 http://ftpmaster.internal/ubuntu/ xenial/main libperl5.22 arm64 5.22.1-3 [2766 kB] Get:65 http://ftpmaster.internal/ubuntu/ xenial/main perl arm64 5.22.1-3 [237 kB] Get:66 http://ftpmaster.internal/ubuntu/ xenial/main perl-base arm64 5.22.1-3 [1140 kB] Get:67 http://ftpmaster.internal/ubuntu/ xenial/main tar arm64 1.28-2.1 [184 kB] Get:68 http://ftpmaster.internal/ubuntu/ xenial/main libapt-pkg5.0 arm64 1.1.10 [628 kB] Get:69 http://ftpmaster.internal/ubuntu/ xenial/main apt arm64 1.1.10 [941 kB] Get:70 http://ftpmaster.internal/ubuntu/ xenial/main gpgv arm64 1.4.19-6ubuntu1 [138 kB] Get:71 http://ftpmaster.internal/ubuntu/ xenial/main libusb-0.1-4 arm64 2:0.1.12-28 [15.0 kB] Get:72 http://ftpmaster.internal/ubuntu/ xenial/main gnupg arm64 1.4.19-6ubuntu1 [565 kB] Get:73 http://ftpmaster.internal/ubuntu/ xenial/main libdebconfclient0 arm64 0.198ubuntu1 [6202 B] Get:74 http://ftpmaster.internal/ubuntu/ xenial/main base-passwd arm64 3.5.39 [50.9 kB] Get:75 http://ftpmaster.internal/ubuntu/ xenial/main ncurses-base all 6.0+20151024-2ubuntu1 [17.1 kB] Get:76 http://ftpmaster.internal/ubuntu/ xenial/main systemd-sysv arm64 228-3ubuntu1 [15.4 kB] Get:77 http://ftpmaster.internal/ubuntu/ xenial/main libdbus-1-3 arm64 1.10.6-1ubuntu1 [136 kB] Get:78 http://ftpmaster.internal/ubuntu/ xenial/main libnih-dbus1 arm64 1.0.3-4.3ubuntu1 [12.5 kB] Get:79 http://ftpmaster.internal/ubuntu/ xenial/main libnih1 arm64 1.0.3-4.3ubuntu1 [42.2 kB] Get:80 http://ftpmaster.internal/ubuntu/ xenial/main libffi6 arm64 3.2.1-4 [16.3 kB] Get:81 http://ftpmaster.internal/ubuntu/ xenial/main libp11-kit0 arm64 0.23.2-3 [84.0 kB] Get:82 http://ftpmaster.internal/ubuntu/ xenial/main libtasn1-6 arm64 4.7-3 [37.7 kB] Get:83 http://ftpmaster.internal/ubuntu/ xenial/main libgnutls-deb0-28 arm64 3.3.18-1ubuntu1 [415 kB] Get:84 http://ftpmaster.internal/ubuntu/ xenial/main libldap-2.4-2 arm64 2.4.41+dfsg-1ubuntu3 [134 kB] Get:85 http://ftpmaster.internal/ubuntu/ xenial/main libcomerr2 arm64 1.42.13-1ubuntu1 [65.1 kB] Get:86 http://ftpmaster.internal/ubuntu/ xenial/main libdevmapper1.02.1 arm64 2:1.02.110-1ubuntu2 [115 kB] Get:87 http://ftpmaster.internal/ubuntu/ xenial/main libgpg-error0 arm64 1.21-1 [29.7 kB] Get:88 http://ftpmaster.internal/ubuntu/ xenial/main libgcrypt20 arm64 1.6.4-4 [266 kB] Get:89 http://ftpmaster.internal/ubuntu/ xenial/main libsepol1 arm64 2.4-2 [150 kB] Get:90 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libsemanage-common all 2.4-3 [6744 B] Get:91 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libsemanage1 arm64 2.4-3 [65.2 kB] Get:92 http://ftpmaster.internal/ubuntu/ xenial/main libss2 arm64 1.42.13-1ubuntu1 [68.6 kB] Get:93 http://ftpmaster.internal/ubuntu/ xenial/main multiarch-support arm64 2.21-0ubuntu5 [7180 B] Get:94 http://ftpmaster.internal/ubuntu/ xenial/main libpng12-0 arm64 1.2.54-1ubuntu1 [106 kB] Get:95 http://ftpmaster.internal/ubuntu/ xenial/main libsqlite3-0 arm64 3.10.0-1 [333 kB] Get:96 http://ftpmaster.internal/ubuntu/ xenial/main libssl1.0.0 arm64 1.0.2e-1ubuntu1 [694 kB] Get:97 http://ftpmaster.internal/ubuntu/ xenial/main dmsetup arm64 2:1.02.110-1ubuntu2 [50.9 kB] Get:98 http://ftpmaster.internal/ubuntu/ xenial/main libgssapi-krb5-2 arm64 1.13.2+dfsg-4 [96.7 kB] Get:99 http://ftpmaster.internal/ubuntu/ xenial/main libkrb5-3 arm64 1.13.2+dfsg-4 [228 kB] Get:100 http://ftpmaster.internal/ubuntu/ xenial/main libkrb5support0 arm64 1.13.2+dfsg-4 [27.4 kB] Get:101 http://ftpmaster.internal/ubuntu/ xenial/main libk5crypto3 arm64 1.13.2+dfsg-4 [73.2 kB] Get:102 http://ftpmaster.internal/ubuntu/ xenial/main libkeyutils1 arm64 1.5.9-8ubuntu1 [9424 B] Get:103 http://ftpmaster.internal/ubuntu/ xenial/main libidn11 arm64 1.32-3ubuntu1 [42.3 kB] Get:104 http://ftpmaster.internal/ubuntu/ xenial/main libcurl3-gnutls arm64 7.45.0-1ubuntu1 [151 kB] Get:105 http://ftpmaster.internal/ubuntu/ xenial/main apt-transport-https arm64 1.1.10 [23.7 kB] Get:106 http://ftpmaster.internal/ubuntu/ xenial/main openssl arm64 1.0.2e-1ubuntu1 [470 kB] Get:107 http://ftpmaster.internal/ubuntu/ xenial/main advancecomp arm64 1.20-1 [145 kB] Get:108 http://ftpmaster.internal/ubuntu/ xenial/main cpp arm64 4:5.2.1-16ubuntu2 [27.6 kB] Get:109 http://ftpmaster.internal/ubuntu/ xenial/main dpkg-dev all 1.18.3ubuntu1 [583 kB] Get:110 http://ftpmaster.internal/ubuntu/ xenial/main libdpkg-perl all 1.18.3ubuntu1 [195 kB] Get:111 http://ftpmaster.internal/ubuntu/ xenial/main gcc arm64 4:5.2.1-16ubuntu2 [5230 B] Get:112 http://ftpmaster.internal/ubuntu/ xenial/main g++ arm64 4:5.2.1-16ubuntu2 [1496 B] Get:113 http://ftpmaster.internal/ubuntu/ xenial/main pkg-create-dbgsym all 0.70 [9046 B] Get:114 http://ftpmaster.internal/ubuntu/ xenial/main pkgbinarymangler all 128 [42.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 110 MB in 29s (3656 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11579 files and directories currently installed.) Preparing to unpack .../base-files_9.4ubuntu3_arm64.deb ... Unpacking base-files (9.4ubuntu3) over (7.2ubuntu11) ... Setting up base-files (9.4ubuntu3) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Updating /etc/profile to current default. Updating /etc/nsswitch.conf to current default. Updating /root/.profile to current default. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11581 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.27.1-1ubuntu3_arm64.deb ... Unpacking bsdutils (1:2.27.1-1ubuntu3) over (1:2.26.2-6ubuntu3) ... Setting up bsdutils (1:2.27.1-1ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11581 files and directories currently installed.) Preparing to unpack .../diffutils_1%3a3.3-3_arm64.deb ... Unpacking diffutils (1:3.3-3) over (1:3.3-1) ... Setting up diffutils (1:3.3-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11581 files and directories currently installed.) Preparing to unpack .../dpkg_1.18.3ubuntu1_arm64.deb ... Unpacking dpkg (1.18.3ubuntu1) over (1.18.2ubuntu5) ... Setting up dpkg (1.18.3ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11581 files and directories currently installed.) Preparing to unpack .../libc6-dev_2.21-0ubuntu5_arm64.deb ... Unpacking libc6-dev:arm64 (2.21-0ubuntu5) over (2.21-0ubuntu4) ... Preparing to unpack .../libc-dev-bin_2.21-0ubuntu5_arm64.deb ... Unpacking libc-dev-bin (2.21-0ubuntu5) over (2.21-0ubuntu4) ... Preparing to unpack .../linux-libc-dev_4.3.0-5.16_arm64.deb ... Unpacking linux-libc-dev:arm64 (4.3.0-5.16) over (4.2.0-16.19) ... Preparing to unpack .../libcap2_1%3a2.24-12_arm64.deb ... Unpacking libcap2:arm64 (1:2.24-12) over (1:2.24-9) ... Setting up libcap2:arm64 (1:2.24-12) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11586 files and directories currently installed.) Preparing to unpack .../libc-bin_2.21-0ubuntu5_arm64.deb ... Unpacking libc-bin (2.21-0ubuntu5) over (2.21-0ubuntu4) ... Setting up libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11586 files and directories currently installed.) Preparing to unpack .../libgomp1_5.3.1-5ubuntu2_arm64.deb ... Unpacking libgomp1:arm64 (5.3.1-5ubuntu2) over (5.2.1-22ubuntu2) ... Preparing to unpack .../libitm1_5.3.1-5ubuntu2_arm64.deb ... Unpacking libitm1:arm64 (5.3.1-5ubuntu2) over (5.2.1-22ubuntu2) ... Preparing to unpack .../libatomic1_5.3.1-5ubuntu2_arm64.deb ... Unpacking libatomic1:arm64 (5.3.1-5ubuntu2) over (5.2.1-22ubuntu2) ... Preparing to unpack .../libasan2_5.3.1-5ubuntu2_arm64.deb ... Unpacking libasan2:arm64 (5.3.1-5ubuntu2) over (5.2.1-22ubuntu2) ... Preparing to unpack .../gcc-5-base_5.3.1-5ubuntu2_arm64.deb ... Unpacking gcc-5-base:arm64 (5.3.1-5ubuntu2) over (5.2.1-22ubuntu2) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up gcc-5-base:arm64 (5.3.1-5ubuntu2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11586 files and directories currently installed.) Preparing to unpack .../libgcc1_1%3a5.3.1-5ubuntu2_arm64.deb ... Unpacking libgcc1:arm64 (1:5.3.1-5ubuntu2) over (1:5.2.1-22ubuntu2) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libgcc1:arm64 (1:5.3.1-5ubuntu2) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11586 files and directories currently installed.) Preparing to unpack .../libubsan0_5.3.1-5ubuntu2_arm64.deb ... Unpacking libubsan0:arm64 (5.3.1-5ubuntu2) over (5.2.1-22ubuntu2) ... Selecting previously unselected package libisl15:arm64. Preparing to unpack .../libisl15_0.15-3_arm64.deb ... Unpacking libisl15:arm64 (0.15-3) ... Preparing to unpack .../cpp-5_5.3.1-5ubuntu2_arm64.deb ... Unpacking cpp-5 (5.3.1-5ubuntu2) over (5.2.1-22ubuntu2) ... Preparing to unpack .../libcc1-0_5.3.1-5ubuntu2_arm64.deb ... Unpacking libcc1-0:arm64 (5.3.1-5ubuntu2) over (5.2.1-22ubuntu2) ... Preparing to unpack .../binutils_2.25.90.20160101-1ubuntu2_arm64.deb ... Unpacking binutils (2.25.90.20160101-1ubuntu2) over (2.25.1-6ubuntu1) ... Preparing to unpack .../g++-5_5.3.1-5ubuntu2_arm64.deb ... Unpacking g++-5 (5.3.1-5ubuntu2) over (5.2.1-22ubuntu2) ... Preparing to unpack .../gcc-5_5.3.1-5ubuntu2_arm64.deb ... Unpacking gcc-5 (5.3.1-5ubuntu2) over (5.2.1-22ubuntu2) ... Preparing to unpack .../libgcc-5-dev_5.3.1-5ubuntu2_arm64.deb ... Unpacking libgcc-5-dev:arm64 (5.3.1-5ubuntu2) over (5.2.1-22ubuntu2) ... Preparing to unpack .../libstdc++-5-dev_5.3.1-5ubuntu2_arm64.deb ... Unpacking libstdc++-5-dev:arm64 (5.3.1-5ubuntu2) over (5.2.1-22ubuntu2) ... Preparing to unpack .../libstdc++6_5.3.1-5ubuntu2_arm64.deb ... Unpacking libstdc++6:arm64 (5.3.1-5ubuntu2) over (5.2.1-22ubuntu2) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libstdc++6:arm64 (5.3.1-5ubuntu2) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11557 files and directories currently installed.) Preparing to unpack .../libgmp10_2%3a6.1.0+dfsg-2_arm64.deb ... Unpacking libgmp10:arm64 (2:6.1.0+dfsg-2) over (2:6.0.0+dfsg-7) ... Preparing to unpack .../libmpfr4_3.1.3-2_arm64.deb ... Unpacking libmpfr4:arm64 (3.1.3-2) over (3.1.3-1) ... Preparing to unpack .../libc6_2.21-0ubuntu5_arm64.deb ... Unpacking libc6:arm64 (2.21-0ubuntu5) over (2.21-0ubuntu4) ... Setting up libc6:arm64 (2.21-0ubuntu5) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11557 files and directories currently installed.) Preparing to unpack .../e2fslibs_1.42.13-1ubuntu1_arm64.deb ... Unpacking e2fslibs:arm64 (1.42.13-1ubuntu1) over (1.42.12-1ubuntu2) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up e2fslibs:arm64 (1.42.13-1ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11557 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.42.13-1ubuntu1_arm64.deb ... Unpacking e2fsprogs (1.42.13-1ubuntu1) over (1.42.12-1ubuntu2) ... Setting up e2fsprogs (1.42.13-1ubuntu1) ... Installing new version of config file /etc/mke2fs.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11558 files and directories currently installed.) Preparing to unpack .../findutils_4.4.2-10_arm64.deb ... Unpacking findutils (4.4.2-10) over (4.4.2-9build1) ... Setting up findutils (4.4.2-10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11558 files and directories currently installed.) Preparing to unpack .../archives/grep_2.22-1_arm64.deb ... Unpacking grep (2.22-1) over (2.21-2) ... Setting up grep (2.22-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11558 files and directories currently installed.) Preparing to unpack .../hostname_3.16ubuntu2_arm64.deb ... Unpacking hostname (3.16ubuntu2) over (3.15ubuntu2) ... Setting up hostname (3.16ubuntu2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11558 files and directories currently installed.) Preparing to unpack .../init_1.24ubuntu2_arm64.deb ... Unpacking init (1.24ubuntu2) over (1.23ubuntu3) ... Setting up init (1.24ubuntu2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11558 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.27.1-1ubuntu3_arm64.deb ... Unpacking libsmartcols1:arm64 (2.27.1-1ubuntu3) over (2.26.2-6ubuntu3) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libsmartcols1:arm64 (2.27.1-1ubuntu3) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11558 files and directories currently installed.) Preparing to unpack .../libuuid1_2.27.1-1ubuntu3_arm64.deb ... Unpacking libuuid1:arm64 (2.27.1-1ubuntu3) over (2.26.2-6ubuntu3) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libuuid1:arm64 (2.27.1-1ubuntu3) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11558 files and directories currently installed.) Preparing to unpack .../libblkid1_2.27.1-1ubuntu3_arm64.deb ... Unpacking libblkid1:arm64 (2.27.1-1ubuntu3) over (2.26.2-6ubuntu3) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libblkid1:arm64 (2.27.1-1ubuntu3) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11558 files and directories currently installed.) Preparing to unpack .../libfdisk1_2.27.1-1ubuntu3_arm64.deb ... Unpacking libfdisk1:arm64 (2.27.1-1ubuntu3) over (2.26.2-6ubuntu3) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libfdisk1:arm64 (2.27.1-1ubuntu3) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11558 files and directories currently installed.) Preparing to unpack .../debconf_1.5.58ubuntu1_all.deb ... Unpacking debconf (1.5.58ubuntu1) over (1.5.57ubuntu1) ... Setting up debconf (1.5.58ubuntu1) ... Removing obsolete conffile /etc/bash_completion.d/debconf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11559 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_2.88dsf-59.2ubuntu3_arm64.deb ... Unpacking sysvinit-utils (2.88dsf-59.2ubuntu3) over (2.88dsf-59.2ubuntu2) ... Setting up sysvinit-utils (2.88dsf-59.2ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11559 files and directories currently installed.) Preparing to unpack .../sysv-rc_2.88dsf-59.2ubuntu3_all.deb ... Unpacking sysv-rc (2.88dsf-59.2ubuntu3) over (2.88dsf-59.2ubuntu2) ... Setting up sysv-rc (2.88dsf-59.2ubuntu3) ... Processing triggers for systemd (225-1ubuntu9) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11559 files and directories currently installed.) Preparing to unpack .../initscripts_2.88dsf-59.2ubuntu3_arm64.deb ... Unpacking initscripts (2.88dsf-59.2ubuntu3) over (2.88dsf-59.2ubuntu2) ... Processing triggers for systemd (225-1ubuntu9) ... Setting up initscripts (2.88dsf-59.2ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11559 files and directories currently installed.) Preparing to unpack .../util-linux_2.27.1-1ubuntu3_arm64.deb ... Unpacking util-linux (2.27.1-1ubuntu3) over (2.26.2-6ubuntu3) ... Setting up util-linux (2.27.1-1ubuntu3) ... Processing triggers for systemd (225-1ubuntu9) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11567 files and directories currently installed.) Preparing to unpack .../libudev1_228-3ubuntu1_arm64.deb ... Unpacking libudev1:arm64 (228-3ubuntu1) over (225-1ubuntu9) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libudev1:arm64 (228-3ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11567 files and directories currently installed.) Preparing to unpack .../udev_228-3ubuntu1_arm64.deb ... Unpacking udev (228-3ubuntu1) over (225-1ubuntu9) ... Preparing to unpack .../libsystemd0_228-3ubuntu1_arm64.deb ... Unpacking libsystemd0:arm64 (228-3ubuntu1) over (225-1ubuntu9) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libsystemd0:arm64 (228-3ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11564 files and directories currently installed.) Preparing to unpack .../systemd_228-3ubuntu1_arm64.deb ... Unpacking systemd (228-3ubuntu1) over (225-1ubuntu9) ... Setting up systemd (228-3ubuntu1) ... Installing new version of config file /etc/pam.d/systemd-user ... Installing new version of config file /etc/systemd/journald.conf ... Installing new version of config file /etc/systemd/logind.conf ... Installing new version of config file /etc/systemd/system.conf ... addgroup: The group `systemd-journal' already exists as a system group. Exiting. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11562 files and directories currently installed.) Preparing to unpack .../libselinux1_2.4-3_arm64.deb ... Unpacking libselinux1:arm64 (2.4-3) over (2.3-2build1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libselinux1:arm64 (2.4-3) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11562 files and directories currently installed.) Preparing to unpack .../libtinfo5_6.0+20151024-2ubuntu1_arm64.deb ... Unpacking libtinfo5:arm64 (6.0+20151024-2ubuntu1) over (5.9+20150516-2ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libtinfo5:arm64 (6.0+20151024-2ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11562 files and directories currently installed.) Preparing to unpack .../libncurses5_6.0+20151024-2ubuntu1_arm64.deb ... Unpacking libncurses5:arm64 (6.0+20151024-2ubuntu1) over (5.9+20150516-2ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libncurses5:arm64 (6.0+20151024-2ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11562 files and directories currently installed.) Preparing to unpack .../libncursesw5_6.0+20151024-2ubuntu1_arm64.deb ... Unpacking libncursesw5:arm64 (6.0+20151024-2ubuntu1) over (5.9+20150516-2ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libncursesw5:arm64 (6.0+20151024-2ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Selecting previously unselected package libprocps4:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11562 files and directories currently installed.) Preparing to unpack .../libprocps4_2%3a3.3.10-4ubuntu1_arm64.deb ... Unpacking libprocps4:arm64 (2:3.3.10-4ubuntu1) ... Preparing to unpack .../procps_2%3a3.3.10-4ubuntu1_arm64.deb ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of stop. Unpacking procps (2:3.3.10-4ubuntu1) over (1:3.3.9-1ubuntu8) ... Preparing to unpack .../libapparmor1_2.10-0ubuntu10_arm64.deb ... Unpacking libapparmor1:arm64 (2.10-0ubuntu10) over (2.10-0ubuntu6) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libapparmor1:arm64 (2.10-0ubuntu10) ... Processing triggers for systemd (228-3ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11571 files and directories currently installed.) Preparing to unpack .../libaudit-common_1%3a2.4.4-4ubuntu1_all.deb ... Unpacking libaudit-common (1:2.4.4-4ubuntu1) over (1:2.4.2-1ubuntu1) ... Setting up libaudit-common (1:2.4.4-4ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11571 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a2.4.4-4ubuntu1_arm64.deb ... Unpacking libaudit1:arm64 (1:2.4.4-4ubuntu1) over (1:2.4.2-1ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libaudit1:arm64 (1:2.4.4-4ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11571 files and directories currently installed.) Preparing to unpack .../libmount1_2.27.1-1ubuntu3_arm64.deb ... Unpacking libmount1:arm64 (2.27.1-1ubuntu3) over (2.26.2-6ubuntu3) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libmount1:arm64 (2.27.1-1ubuntu3) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11571 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.2.3-2ubuntu3_arm64.deb ... Unpacking libseccomp2:arm64 (2.2.3-2ubuntu3) over (2.2.3-2ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libseccomp2:arm64 (2.2.3-2ubuntu3) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11571 files and directories currently installed.) Preparing to unpack .../libcap2-bin_1%3a2.24-12_arm64.deb ... Unpacking libcap2-bin (1:2.24-12) over (1:2.24-9) ... Setting up libcap2-bin (1:2.24-12) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11571 files and directories currently installed.) Preparing to unpack .../lsb-base_9.20160110_all.deb ... Unpacking lsb-base (9.20160110) over (4.1+Debian11ubuntu8) ... Setting up lsb-base (9.20160110) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11571 files and directories currently installed.) Preparing to unpack .../mount_2.27.1-1ubuntu3_arm64.deb ... Unpacking mount (2.27.1-1ubuntu3) over (2.26.2-6ubuntu3) ... Setting up mount (2.27.1-1ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11571 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.0+20151024-2ubuntu1_arm64.deb ... Unpacking ncurses-bin (6.0+20151024-2ubuntu1) over (5.9+20150516-2ubuntu1) ... Setting up ncurses-bin (6.0+20151024-2ubuntu1) ... dpkg: perl-modules: dependency problems, but removing anyway as you requested: perl depends on perl-modules (>= 5.20.2-6). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11567 files and directories currently installed.) Removing perl-modules (5.20.2-6) ... Purging configuration files for perl-modules (5.20.2-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10839 files and directories currently installed.) Preparing to unpack .../perl_5.22.1-3_arm64.deb ... Unpacking perl (5.22.1-3) over (5.20.2-6) ... Selecting previously unselected package perl-modules-5.22. Preparing to unpack .../perl-modules-5.22_5.22.1-3_all.deb ... Unpacking perl-modules-5.22 (5.22.1-3) ... Selecting previously unselected package libperl5.22:arm64. Preparing to unpack .../libperl5.22_5.22.1-3_arm64.deb ... Unpacking libperl5.22:arm64 (5.22.1-3) ... Preparing to unpack .../perl-base_5.22.1-3_arm64.deb ... Unpacking perl-base (5.22.1-3) over (5.20.2-6) ... Setting up perl-base (5.22.1-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12143 files and directories currently installed.) Preparing to unpack .../tar_1.28-2.1_arm64.deb ... Unpacking tar (1.28-2.1) over (1.27.1-2) ... Setting up tar (1.28-2.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12143 files and directories currently installed.) Preparing to unpack .../archives/apt_1.1.10_arm64.deb ... Unpacking apt (1.1.10) over (1.0.10.2ubuntu1) ... Selecting previously unselected package libapt-pkg5.0:arm64. Preparing to unpack .../libapt-pkg5.0_1.1.10_arm64.deb ... Unpacking libapt-pkg5.0:arm64 (1.1.10) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libapt-pkg5.0:arm64 (1.1.10) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12171 files and directories currently installed.) Preparing to unpack .../gpgv_1.4.19-6ubuntu1_arm64.deb ... Unpacking gpgv (1.4.19-6ubuntu1) over (1.4.18-7ubuntu1) ... Setting up gpgv (1.4.19-6ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12171 files and directories currently installed.) Preparing to unpack .../libusb-0.1-4_2%3a0.1.12-28_arm64.deb ... Unpacking libusb-0.1-4:arm64 (2:0.1.12-28) over (2:0.1.12-27) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libusb-0.1-4:arm64 (2:0.1.12-28) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12170 files and directories currently installed.) Preparing to unpack .../gnupg_1.4.19-6ubuntu1_arm64.deb ... Unpacking gnupg (1.4.19-6ubuntu1) over (1.4.18-7ubuntu1) ... Setting up gnupg (1.4.19-6ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12169 files and directories currently installed.) Preparing to unpack .../libdebconfclient0_0.198ubuntu1_arm64.deb ... Unpacking libdebconfclient0:arm64 (0.198ubuntu1) over (0.192ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libdebconfclient0:arm64 (0.198ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12169 files and directories currently installed.) Preparing to unpack .../base-passwd_3.5.39_arm64.deb ... Unpacking base-passwd (3.5.39) over (3.5.38) ... Setting up base-passwd (3.5.39) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12169 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.0+20151024-2ubuntu1_all.deb ... Unpacking ncurses-base (6.0+20151024-2ubuntu1) over (5.9+20150516-2ubuntu1) ... Setting up ncurses-base (6.0+20151024-2ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12170 files and directories currently installed.) Preparing to unpack .../systemd-sysv_228-3ubuntu1_arm64.deb ... Unpacking systemd-sysv (228-3ubuntu1) over (225-1ubuntu9) ... Setting up systemd-sysv (228-3ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12170 files and directories currently installed.) Preparing to unpack .../libdbus-1-3_1.10.6-1ubuntu1_arm64.deb ... Unpacking libdbus-1-3:arm64 (1.10.6-1ubuntu1) over (1.10.0-1ubuntu1) ... Preparing to unpack .../libnih-dbus1_1.0.3-4.3ubuntu1_arm64.deb ... Unpacking libnih-dbus1:arm64 (1.0.3-4.3ubuntu1) over (1.0.3-4ubuntu27) ... Preparing to unpack .../libnih1_1.0.3-4.3ubuntu1_arm64.deb ... Unpacking libnih1:arm64 (1.0.3-4.3ubuntu1) over (1.0.3-4ubuntu27) ... Preparing to unpack .../libffi6_3.2.1-4_arm64.deb ... Unpacking libffi6:arm64 (3.2.1-4) over (3.2.1-3) ... Preparing to unpack .../libp11-kit0_0.23.2-3_arm64.deb ... Unpacking libp11-kit0:arm64 (0.23.2-3) over (0.23.1-3) ... Preparing to unpack .../libtasn1-6_4.7-3_arm64.deb ... Unpacking libtasn1-6:arm64 (4.7-3) over (4.5-2) ... Preparing to unpack .../libgnutls-deb0-28_3.3.18-1ubuntu1_arm64.deb ... Unpacking libgnutls-deb0-28:arm64 (3.3.18-1ubuntu1) over (3.3.15-5ubuntu2) ... Preparing to unpack .../libldap-2.4-2_2.4.41+dfsg-1ubuntu3_arm64.deb ... Unpacking libldap-2.4-2:arm64 (2.4.41+dfsg-1ubuntu3) over (2.4.41+dfsg-1ubuntu2) ... Preparing to unpack .../libcomerr2_1.42.13-1ubuntu1_arm64.deb ... Unpacking libcomerr2:arm64 (1.42.13-1ubuntu1) over (1.42.12-1ubuntu2) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libcomerr2:arm64 (1.42.13-1ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12170 files and directories currently installed.) Preparing to unpack .../libdevmapper1.02.1_2%3a1.02.110-1ubuntu2_arm64.deb ... Unpacking libdevmapper1.02.1:arm64 (2:1.02.110-1ubuntu2) over (2:1.02.99-1ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libdevmapper1.02.1:arm64 (2:1.02.110-1ubuntu2) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12170 files and directories currently installed.) Preparing to unpack .../libgpg-error0_1.21-1_arm64.deb ... Unpacking libgpg-error0:arm64 (1.21-1) over (1.19-2) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libgpg-error0:arm64 (1.21-1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12170 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.6.4-4_arm64.deb ... Unpacking libgcrypt20:arm64 (1.6.4-4) over (1.6.3-2ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libgcrypt20:arm64 (1.6.4-4) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12170 files and directories currently installed.) Preparing to unpack .../libsepol1_2.4-2_arm64.deb ... Unpacking libsepol1:arm64 (2.4-2) over (2.3-2) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libsepol1:arm64 (2.4-2) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12170 files and directories currently installed.) Preparing to unpack .../libsemanage-common_2.4-3_all.deb ... Unpacking libsemanage-common (2.4-3) over (2.3-1build2) ... Setting up libsemanage-common (2.4-3) ... Installing new version of config file /etc/selinux/semanage.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12170 files and directories currently installed.) Preparing to unpack .../libsemanage1_2.4-3_arm64.deb ... Unpacking libsemanage1:arm64 (2.4-3) over (2.3-1build2) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libsemanage1:arm64 (2.4-3) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12170 files and directories currently installed.) Preparing to unpack .../libss2_1.42.13-1ubuntu1_arm64.deb ... Unpacking libss2:arm64 (1.42.13-1ubuntu1) over (1.42.12-1ubuntu2) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libss2:arm64 (1.42.13-1ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12170 files and directories currently installed.) Preparing to unpack .../multiarch-support_2.21-0ubuntu5_arm64.deb ... Unpacking multiarch-support (2.21-0ubuntu5) over (2.21-0ubuntu4) ... Setting up multiarch-support (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12170 files and directories currently installed.) Preparing to unpack .../libpng12-0_1.2.54-1ubuntu1_arm64.deb ... Unpacking libpng12-0:arm64 (1.2.54-1ubuntu1) over (1.2.51-0ubuntu3) ... Preparing to unpack .../libsqlite3-0_3.10.0-1_arm64.deb ... Unpacking libsqlite3-0:arm64 (3.10.0-1) over (3.8.11.1-1) ... Preparing to unpack .../libssl1.0.0_1.0.2e-1ubuntu1_arm64.deb ... Unpacking libssl1.0.0:arm64 (1.0.2e-1ubuntu1) over (1.0.2d-0ubuntu1) ... Preparing to unpack .../dmsetup_2%3a1.02.110-1ubuntu2_arm64.deb ... Unpacking dmsetup (2:1.02.110-1ubuntu2) over (2:1.02.99-1ubuntu1) ... Preparing to unpack .../libgssapi-krb5-2_1.13.2+dfsg-4_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.13.2+dfsg-4) over (1.13.2+dfsg-2) ... Preparing to unpack .../libkrb5-3_1.13.2+dfsg-4_arm64.deb ... Unpacking libkrb5-3:arm64 (1.13.2+dfsg-4) over (1.13.2+dfsg-2) ... Preparing to unpack .../libkrb5support0_1.13.2+dfsg-4_arm64.deb ... Unpacking libkrb5support0:arm64 (1.13.2+dfsg-4) over (1.13.2+dfsg-2) ... Preparing to unpack .../libk5crypto3_1.13.2+dfsg-4_arm64.deb ... Unpacking libk5crypto3:arm64 (1.13.2+dfsg-4) over (1.13.2+dfsg-2) ... Preparing to unpack .../libkeyutils1_1.5.9-8ubuntu1_arm64.deb ... Unpacking libkeyutils1:arm64 (1.5.9-8ubuntu1) over (1.5.9-5ubuntu1) ... Preparing to unpack .../libidn11_1.32-3ubuntu1_arm64.deb ... Unpacking libidn11:arm64 (1.32-3ubuntu1) over (1.28-1ubuntu2) ... Preparing to unpack .../libcurl3-gnutls_7.45.0-1ubuntu1_arm64.deb ... Unpacking libcurl3-gnutls:arm64 (7.45.0-1ubuntu1) over (7.43.0-1ubuntu2) ... Preparing to unpack .../apt-transport-https_1.1.10_arm64.deb ... Unpacking apt-transport-https (1.1.10) over (1.0.10.2ubuntu1) ... Preparing to unpack .../openssl_1.0.2e-1ubuntu1_arm64.deb ... Unpacking openssl (1.0.2e-1ubuntu1) over (1.0.2d-0ubuntu1) ... Preparing to unpack .../advancecomp_1.20-1_arm64.deb ... Unpacking advancecomp (1.20-1) over (1.19-1) ... Preparing to unpack .../cpp_4%3a5.2.1-16ubuntu2_arm64.deb ... Unpacking cpp (4:5.2.1-16ubuntu2) over (4:5.2.1-3ubuntu1) ... Preparing to unpack .../dpkg-dev_1.18.3ubuntu1_all.deb ... Unpacking dpkg-dev (1.18.3ubuntu1) over (1.18.2ubuntu5) ... Preparing to unpack .../libdpkg-perl_1.18.3ubuntu1_all.deb ... Unpacking libdpkg-perl (1.18.3ubuntu1) over (1.18.2ubuntu5) ... Preparing to unpack .../gcc_4%3a5.2.1-16ubuntu2_arm64.deb ... Removing old gcc doc directory. Unpacking gcc (4:5.2.1-16ubuntu2) over (4:5.2.1-3ubuntu1) ... Preparing to unpack .../g++_4%3a5.2.1-16ubuntu2_arm64.deb ... Unpacking g++ (4:5.2.1-16ubuntu2) over (4:5.2.1-3ubuntu1) ... Preparing to unpack .../pkg-create-dbgsym_0.70_all.deb ... Unpacking pkg-create-dbgsym (0.70) over (0.69) ... Preparing to unpack .../pkgbinarymangler_128_all.deb ... Unpacking pkgbinarymangler (128) over (122) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libc-dev-bin (2.21-0ubuntu5) ... Setting up linux-libc-dev:arm64 (4.3.0-5.16) ... Setting up libc6-dev:arm64 (2.21-0ubuntu5) ... Setting up libgomp1:arm64 (5.3.1-5ubuntu2) ... Setting up libitm1:arm64 (5.3.1-5ubuntu2) ... Setting up libatomic1:arm64 (5.3.1-5ubuntu2) ... Setting up libasan2:arm64 (5.3.1-5ubuntu2) ... Setting up libubsan0:arm64 (5.3.1-5ubuntu2) ... Setting up libgmp10:arm64 (2:6.1.0+dfsg-2) ... Setting up libisl15:arm64 (0.15-3) ... Setting up libmpfr4:arm64 (3.1.3-2) ... Setting up cpp-5 (5.3.1-5ubuntu2) ... Setting up libcc1-0:arm64 (5.3.1-5ubuntu2) ... Setting up binutils (2.25.90.20160101-1ubuntu2) ... Setting up libgcc-5-dev:arm64 (5.3.1-5ubuntu2) ... Setting up gcc-5 (5.3.1-5ubuntu2) ... Setting up libstdc++-5-dev:arm64 (5.3.1-5ubuntu2) ... Setting up g++-5 (5.3.1-5ubuntu2) ... Setting up libprocps4:arm64 (2:3.3.10-4ubuntu1) ... Setting up procps (2:3.3.10-4ubuntu1) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up udev (228-3ubuntu1) ... Installing new version of config file /etc/init.d/udev ... addgroup: The group `input' already exists as a system group. Exiting. virtio network devices detected, disabling predictable interface names in /etc/systemd/network/50-virtio-kernel-names.link Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of restart. Removing obsolete conffile /etc/init.d/lvm2 ... Setting up perl-modules-5.22 (5.22.1-3) ... Setting up libperl5.22:arm64 (5.22.1-3) ... Setting up perl (5.22.1-3) ... Setting up apt (1.1.10) ... Installing new version of config file /etc/apt/apt.conf.d/01-vendor-ubuntu ... Installing new version of config file /etc/apt/apt.conf.d/01autoremove ... Installing new version of config file /etc/cron.daily/apt ... Installing new version of config file /etc/kernel/postinst.d/apt-auto-removal ... usermod: no changes Setting up libdbus-1-3:arm64 (1.10.6-1ubuntu1) ... Setting up libnih1:arm64 (1.0.3-4.3ubuntu1) ... Setting up libnih-dbus1:arm64 (1.0.3-4.3ubuntu1) ... Setting up libffi6:arm64 (3.2.1-4) ... Setting up libp11-kit0:arm64 (0.23.2-3) ... Setting up libtasn1-6:arm64 (4.7-3) ... Setting up libgnutls-deb0-28:arm64 (3.3.18-1ubuntu1) ... Setting up libldap-2.4-2:arm64 (2.4.41+dfsg-1ubuntu3) ... Setting up libpng12-0:arm64 (1.2.54-1ubuntu1) ... Setting up libsqlite3-0:arm64 (3.10.0-1) ... Setting up libssl1.0.0:arm64 (1.0.2e-1ubuntu1) ... Setting up dmsetup (2:1.02.110-1ubuntu2) ... Setting up libkrb5support0:arm64 (1.13.2+dfsg-4) ... Setting up libk5crypto3:arm64 (1.13.2+dfsg-4) ... Setting up libkeyutils1:arm64 (1.5.9-8ubuntu1) ... Setting up libkrb5-3:arm64 (1.13.2+dfsg-4) ... Setting up libgssapi-krb5-2:arm64 (1.13.2+dfsg-4) ... Setting up libidn11:arm64 (1.32-3ubuntu1) ... Setting up libcurl3-gnutls:arm64 (7.45.0-1ubuntu1) ... Setting up apt-transport-https (1.1.10) ... Setting up openssl (1.0.2e-1ubuntu1) ... Setting up advancecomp (1.20-1) ... Setting up cpp (4:5.2.1-16ubuntu2) ... Setting up libdpkg-perl (1.18.3ubuntu1) ... Setting up dpkg-dev (1.18.3ubuntu1) ... Setting up gcc (4:5.2.1-16ubuntu2) ... Setting up g++ (4:5.2.1-16ubuntu2) ... Setting up pkg-create-dbgsym (0.70) ... Setting up pkgbinarymangler (128) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Processing triggers for systemd (228-3ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-8834663', 'arm64', 'xenial-proposed', '-c', 'chroot:autobuild', '--arch=arm64', '--dist=xenial-proposed', '--purge=never', '--nolog', 'exonerate_2.2.0-7.dsc'] Initiating build PACKAGEBUILD-8834663 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 3.19.0-31-generic #36-Ubuntu SMP Wed Oct 7 15:08:43 UTC 2015 aarch64 sbuild (Debian sbuild) 0.65.2 (24 Mar 2015) on bos01-arm64-006.buildd ╔══════════════════════════════════════════════════════════════════════════════╗ ║ exonerate 2.2.0-7 (arm64) 11 Jan 2016 23:13 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: exonerate Version: 2.2.0-7 Source Version: 2.2.0-7 Distribution: xenial-proposed Machine Architecture: arm64 Host Architecture: arm64 Build Architecture: arm64 I: NOTICE: Log filtering will replace 'build/exonerate-WBHasf/exonerate-2.2.0' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/exonerate-WBHasf' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-8834663/chroot-autobuild' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Local sources ───────────── exonerate_2.2.0-7.dsc exists in .; copying to chroot Check architectures ─────────────────── Check dependencies ────────────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/«BUILDDIR»/resolver-ytpXgn/apt_archive/sbuild-build-depends-core-dummy.deb'. Get:1 file:/«BUILDDIR»/resolver-ytpXgn/apt_archive ./ InRelease Ign:1 file:/«BUILDDIR»/resolver-ytpXgn/apt_archive ./ InRelease Get:2 file:/«BUILDDIR»/resolver-ytpXgn/apt_archive ./ Release [2119 B] Get:2 file:/«BUILDDIR»/resolver-ytpXgn/apt_archive ./ Release [2119 B] Get:3 file:/«BUILDDIR»/resolver-ytpXgn/apt_archive ./ Release.gpg Ign:3 file:/«BUILDDIR»/resolver-ytpXgn/apt_archive ./ Release.gpg Get:4 file:/«BUILDDIR»/resolver-ytpXgn/apt_archive ./ Sources [208 B] Get:5 file:/«BUILDDIR»/resolver-ytpXgn/apt_archive ./ Packages [525 B] Ign:4 file:/«BUILDDIR»/resolver-ytpXgn/apt_archive ./ Sources Ign:5 file:/«BUILDDIR»/resolver-ytpXgn/apt_archive ./ Packages Get:4 file:/«BUILDDIR»/resolver-ytpXgn/apt_archive ./ Sources [208 B] Get:5 file:/«BUILDDIR»/resolver-ytpXgn/apt_archive ./ Packages [525 B] Reading package lists... W: The repository 'file:/«BUILDDIR»/resolver-ytpXgn/apt_archive ./ Release' is not signed. Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libapt-pkg4.16 libisl13 libprocps3 udev Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/772 B of archives. After this operation, 0 B of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-core-dummy Authentication warning overridden. Get:1 file:/«BUILDDIR»/resolver-ytpXgn/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [772 B] debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12166 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), autotools-dev, libglib2.0-dev, libreadline-dev, dh-autoreconf Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), autotools-dev, libglib2.0-dev, libreadline-dev, dh-autoreconf dpkg-deb: building package 'sbuild-build-depends-exonerate-dummy' in '/«BUILDDIR»/resolver-4OnLnq/apt_archive/sbuild-build-depends-exonerate-dummy.deb'. Get:1 file:/«BUILDDIR»/resolver-4OnLnq/apt_archive ./ InRelease Ign:1 file:/«BUILDDIR»/resolver-4OnLnq/apt_archive ./ InRelease Get:2 file:/«BUILDDIR»/resolver-4OnLnq/apt_archive ./ Release [2119 B] Get:2 file:/«BUILDDIR»/resolver-4OnLnq/apt_archive ./ Release [2119 B] Get:3 file:/«BUILDDIR»/resolver-4OnLnq/apt_archive ./ Release.gpg Ign:3 file:/«BUILDDIR»/resolver-4OnLnq/apt_archive ./ Release.gpg Get:4 file:/«BUILDDIR»/resolver-4OnLnq/apt_archive ./ Sources [450 B] Get:5 file:/«BUILDDIR»/resolver-4OnLnq/apt_archive ./ Packages [716 B] Ign:4 file:/«BUILDDIR»/resolver-4OnLnq/apt_archive ./ Sources Ign:5 file:/«BUILDDIR»/resolver-4OnLnq/apt_archive ./ Packages Get:4 file:/«BUILDDIR»/resolver-4OnLnq/apt_archive ./ Sources [450 B] Get:5 file:/«BUILDDIR»/resolver-4OnLnq/apt_archive ./ Packages [716 B] Reading package lists... W: The repository 'file:/«BUILDDIR»/resolver-4OnLnq/apt_archive ./ Release' is not signed. Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install exonerate build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libapt-pkg4.16 libisl13 libprocps3 udev Use 'sudo apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasprintf0v5 libcroco3 libelf1 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev libicu55 libmagic1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libreadline-dev libreadline6-dev libsigsegv2 libtimedate-perl libtinfo-dev libtool libunistring0 libxml2 m4 man-db mime-support pkg-config po-debconf python python-minimal python2.7 python2.7-minimal zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc groff libglib2.0-doc readline-doc libtool-doc gfortran | fortran95-compiler gcj-jdk less www-browser libmail-box-perl python-doc python-tk python2.7-doc binfmt-support Recommended packages: curl | wget | lynx-cur libasprintf-dev libgettextpo-dev shared-mime-info xdg-user-dirs libltdl-dev xml-core libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasprintf0v5 libcroco3 libelf1 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev libicu55 libmagic1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libreadline-dev libreadline6-dev libsigsegv2 libtimedate-perl libtinfo-dev libtool libunistring0 libxml2 m4 man-db mime-support pkg-config po-debconf python python-minimal python2.7 python2.7-minimal sbuild-build-depends-exonerate-dummy zlib1g-dev 0 upgraded, 52 newly installed, 0 to remove and 0 not upgraded. Need to get 21.9 MB/21.9 MB of archives. After this operation, 96.3 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-exonerate-dummy Authentication warning overridden. Get:1 file:/«BUILDDIR»/resolver-4OnLnq/apt_archive ./ sbuild-build-depends-exonerate-dummy 0.invalid.0 [956 B] Get:2 http://ftpmaster.internal/ubuntu xenial/main arm64 groff-base arm64 1.22.3-5 [1122 kB] Get:3 http://ftpmaster.internal/ubuntu xenial/main arm64 bsdmainutils arm64 9.0.6ubuntu1 [171 kB] Get:4 http://ftpmaster.internal/ubuntu xenial/main arm64 libpipeline1 arm64 1.4.1-2 [21.9 kB] Get:5 http://ftpmaster.internal/ubuntu xenial/main arm64 man-db arm64 2.7.5-1 [832 kB] Get:6 http://ftpmaster.internal/ubuntu xenial/main arm64 libpcrecpp0v5 arm64 2:8.35-7.1ubuntu1 [14.7 kB] Get:7 http://ftpmaster.internal/ubuntu xenial/main arm64 libsigsegv2 arm64 2.10-4 [13.3 kB] Get:8 http://ftpmaster.internal/ubuntu xenial/main arm64 libunistring0 arm64 0.9.3-5.2ubuntu1 [251 kB] Get:9 http://ftpmaster.internal/ubuntu xenial/main arm64 libpython2.7-minimal arm64 2.7.11-2 [336 kB] Get:10 http://ftpmaster.internal/ubuntu xenial/main arm64 python2.7-minimal arm64 2.7.11-2 [1123 kB] Get:11 http://ftpmaster.internal/ubuntu xenial/main arm64 python-minimal arm64 2.7.11-1 [28.1 kB] Get:12 http://ftpmaster.internal/ubuntu xenial/main arm64 mime-support all 3.59ubuntu1 [31.0 kB] Get:13 http://ftpmaster.internal/ubuntu xenial/main arm64 libexpat1 arm64 2.1.0-7 [58.8 kB] Get:14 http://ftpmaster.internal/ubuntu xenial/main arm64 libpython2.7-stdlib arm64 2.7.11-2 [1824 kB] Get:15 http://ftpmaster.internal/ubuntu xenial/main arm64 python2.7 arm64 2.7.11-2 [217 kB] Get:16 http://ftpmaster.internal/ubuntu xenial/main arm64 libpython-stdlib arm64 2.7.11-1 [7684 B] Get:17 http://ftpmaster.internal/ubuntu xenial/main arm64 python arm64 2.7.11-1 [137 kB] Get:18 http://ftpmaster.internal/ubuntu xenial/main arm64 libmagic1 arm64 1:5.25-2ubuntu1 [209 kB] Get:19 http://ftpmaster.internal/ubuntu xenial/main arm64 file arm64 1:5.25-2ubuntu1 [21.2 kB] Get:20 http://ftpmaster.internal/ubuntu xenial/main arm64 libasprintf0v5 arm64 0.19.6-1ubuntu1 [6934 B] Get:21 http://ftpmaster.internal/ubuntu xenial/main arm64 gettext-base arm64 0.19.6-1ubuntu1 [45.9 kB] Get:22 http://ftpmaster.internal/ubuntu xenial/main arm64 libelf1 arm64 0.164-1 [34.2 kB] Get:23 http://ftpmaster.internal/ubuntu xenial/main arm64 libglib2.0-0 arm64 2.47.3-3 [922 kB] Get:24 http://ftpmaster.internal/ubuntu xenial/main arm64 libglib2.0-data all 2.47.3-3 [129 kB] Get:25 http://ftpmaster.internal/ubuntu xenial/main arm64 libicu55 arm64 55.1-6ubuntu1 [7505 kB] Get:26 http://ftpmaster.internal/ubuntu xenial/main arm64 libxml2 arm64 2.9.2+zdfsg1-4ubuntu2 [564 kB] Get:27 http://ftpmaster.internal/ubuntu xenial/main arm64 m4 arm64 1.4.17-5 [184 kB] Get:28 http://ftpmaster.internal/ubuntu xenial/main arm64 autoconf all 2.69-9 [321 kB] Get:29 http://ftpmaster.internal/ubuntu xenial/main arm64 autotools-dev all 20150820.1 [39.8 kB] Get:30 http://ftpmaster.internal/ubuntu xenial/main arm64 automake all 1:1.15-1ubuntu1 [511 kB] Get:31 http://ftpmaster.internal/ubuntu xenial/main arm64 autopoint all 0.19.6-1ubuntu1 [404 kB] Get:32 http://ftpmaster.internal/ubuntu xenial/main arm64 libcroco3 arm64 0.6.11-1 [66.0 kB] Get:33 http://ftpmaster.internal/ubuntu xenial/main arm64 gettext arm64 0.19.6-1ubuntu1 [1004 kB] Get:34 http://ftpmaster.internal/ubuntu xenial/main arm64 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:35 http://ftpmaster.internal/ubuntu xenial/main arm64 po-debconf all 1.0.19 [234 kB] Get:36 http://ftpmaster.internal/ubuntu xenial/main arm64 libarchive-zip-perl all 1.56-2 [84.1 kB] Get:37 http://ftpmaster.internal/ubuntu xenial/main arm64 libfile-stripnondeterminism-perl all 0.014-1 [10.1 kB] Get:38 http://ftpmaster.internal/ubuntu xenial/main arm64 libtimedate-perl all 2.3000-2 [37.5 kB] Get:39 http://ftpmaster.internal/ubuntu xenial/main arm64 dh-strip-nondeterminism all 0.014-1 [5596 B] Get:40 http://ftpmaster.internal/ubuntu xenial/main arm64 debhelper all 9.20151225ubuntu1 [744 kB] Get:41 http://ftpmaster.internal/ubuntu xenial/main arm64 libtool all 2.4.2-1.11 [180 kB] Get:42 http://ftpmaster.internal/ubuntu xenial/main arm64 dh-autoreconf all 10 [15.3 kB] Get:43 http://ftpmaster.internal/ubuntu xenial/main arm64 libglib2.0-bin arm64 2.47.3-3 [37.8 kB] Get:44 http://ftpmaster.internal/ubuntu xenial/main arm64 libpcre16-3 arm64 2:8.35-7.1ubuntu1 [114 kB] Get:45 http://ftpmaster.internal/ubuntu xenial/main arm64 libpcre32-3 arm64 2:8.35-7.1ubuntu1 [108 kB] Get:46 http://ftpmaster.internal/ubuntu xenial/main arm64 libpcre3-dev arm64 2:8.35-7.1ubuntu1 [440 kB] Get:47 http://ftpmaster.internal/ubuntu xenial/main arm64 pkg-config arm64 0.29-2ubuntu2 [42.2 kB] Get:48 http://ftpmaster.internal/ubuntu xenial/main arm64 zlib1g-dev arm64 1:1.2.8.dfsg-2ubuntu4 [162 kB] Get:49 http://ftpmaster.internal/ubuntu xenial/main arm64 libglib2.0-dev arm64 2.47.3-3 [1295 kB] Get:50 http://ftpmaster.internal/ubuntu xenial/main arm64 libtinfo-dev arm64 6.0+20151024-2ubuntu1 [71.6 kB] Get:51 http://ftpmaster.internal/ubuntu xenial/main arm64 libreadline6-dev arm64 6.3-8ubuntu1 [115 kB] Get:52 http://ftpmaster.internal/ubuntu xenial/main arm64 libreadline-dev arm64 6.3-8ubuntu1 [1042 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 21.9 MB in 0s (23.9 MB/s) Selecting previously unselected package groff-base. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12166 files and directories currently installed.) Preparing to unpack .../groff-base_1.22.3-5_arm64.deb ... Unpacking groff-base (1.22.3-5) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../bsdmainutils_9.0.6ubuntu1_arm64.deb ... Unpacking bsdmainutils (9.0.6ubuntu1) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../libpipeline1_1.4.1-2_arm64.deb ... Unpacking libpipeline1:arm64 (1.4.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../man-db_2.7.5-1_arm64.deb ... Unpacking man-db (2.7.5-1) ... Selecting previously unselected package libpcrecpp0v5:arm64. Preparing to unpack .../libpcrecpp0v5_2%3a8.35-7.1ubuntu1_arm64.deb ... Unpacking libpcrecpp0v5:arm64 (2:8.35-7.1ubuntu1) ... Selecting previously unselected package libsigsegv2:arm64. Preparing to unpack .../libsigsegv2_2.10-4_arm64.deb ... Unpacking libsigsegv2:arm64 (2.10-4) ... Selecting previously unselected package libunistring0:arm64. Preparing to unpack .../libunistring0_0.9.3-5.2ubuntu1_arm64.deb ... Unpacking libunistring0:arm64 (0.9.3-5.2ubuntu1) ... Selecting previously unselected package libpython2.7-minimal:arm64. Preparing to unpack .../libpython2.7-minimal_2.7.11-2_arm64.deb ... Unpacking libpython2.7-minimal:arm64 (2.7.11-2) ... Selecting previously unselected package python2.7-minimal. Preparing to unpack .../python2.7-minimal_2.7.11-2_arm64.deb ... Unpacking python2.7-minimal (2.7.11-2) ... Selecting previously unselected package python-minimal. Preparing to unpack .../python-minimal_2.7.11-1_arm64.deb ... Unpacking python-minimal (2.7.11-1) ... Selecting previously unselected package mime-support. Preparing to unpack .../mime-support_3.59ubuntu1_all.deb ... Unpacking mime-support (3.59ubuntu1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.1.0-7_arm64.deb ... Unpacking libexpat1:arm64 (2.1.0-7) ... Selecting previously unselected package libpython2.7-stdlib:arm64. Preparing to unpack .../libpython2.7-stdlib_2.7.11-2_arm64.deb ... Unpacking libpython2.7-stdlib:arm64 (2.7.11-2) ... Selecting previously unselected package python2.7. Preparing to unpack .../python2.7_2.7.11-2_arm64.deb ... Unpacking python2.7 (2.7.11-2) ... Selecting previously unselected package libpython-stdlib:arm64. Preparing to unpack .../libpython-stdlib_2.7.11-1_arm64.deb ... Unpacking libpython-stdlib:arm64 (2.7.11-1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libpython2.7-minimal:arm64 (2.7.11-2) ... Setting up python2.7-minimal (2.7.11-2) ... Setting up python-minimal (2.7.11-1) ... Selecting previously unselected package python. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13458 files and directories currently installed.) Preparing to unpack .../python_2.7.11-1_arm64.deb ... Unpacking python (2.7.11-1) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../libmagic1_1%3a5.25-2ubuntu1_arm64.deb ... Unpacking libmagic1:arm64 (1:5.25-2ubuntu1) ... Selecting previously unselected package file. Preparing to unpack .../file_1%3a5.25-2ubuntu1_arm64.deb ... Unpacking file (1:5.25-2ubuntu1) ... Selecting previously unselected package libasprintf0v5:arm64. Preparing to unpack .../libasprintf0v5_0.19.6-1ubuntu1_arm64.deb ... Unpacking libasprintf0v5:arm64 (0.19.6-1ubuntu1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../gettext-base_0.19.6-1ubuntu1_arm64.deb ... Unpacking gettext-base (0.19.6-1ubuntu1) ... Selecting previously unselected package libelf1:arm64. Preparing to unpack .../libelf1_0.164-1_arm64.deb ... Unpacking libelf1:arm64 (0.164-1) ... Selecting previously unselected package libglib2.0-0:arm64. Preparing to unpack .../libglib2.0-0_2.47.3-3_arm64.deb ... Unpacking libglib2.0-0:arm64 (2.47.3-3) ... Selecting previously unselected package libglib2.0-data. Preparing to unpack .../libglib2.0-data_2.47.3-3_all.deb ... Unpacking libglib2.0-data (2.47.3-3) ... Selecting previously unselected package libicu55:arm64. Preparing to unpack .../libicu55_55.1-6ubuntu1_arm64.deb ... Unpacking libicu55:arm64 (55.1-6ubuntu1) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../libxml2_2.9.2+zdfsg1-4ubuntu2_arm64.deb ... Unpacking libxml2:arm64 (2.9.2+zdfsg1-4ubuntu2) ... Selecting previously unselected package m4. Preparing to unpack .../archives/m4_1.4.17-5_arm64.deb ... Unpacking m4 (1.4.17-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../autoconf_2.69-9_all.deb ... Unpacking autoconf (2.69-9) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../autotools-dev_20150820.1_all.deb ... Unpacking autotools-dev (20150820.1) ... Selecting previously unselected package automake. Preparing to unpack .../automake_1%3a1.15-1ubuntu1_all.deb ... Unpacking automake (1:1.15-1ubuntu1) ... Selecting previously unselected package autopoint. Preparing to unpack .../autopoint_0.19.6-1ubuntu1_all.deb ... Unpacking autopoint (0.19.6-1ubuntu1) ... Selecting previously unselected package libcroco3:arm64. Preparing to unpack .../libcroco3_0.6.11-1_arm64.deb ... Unpacking libcroco3:arm64 (0.6.11-1) ... Selecting previously unselected package gettext. Preparing to unpack .../gettext_0.19.6-1ubuntu1_arm64.deb ... Unpacking gettext (0.19.6-1ubuntu1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../intltool-debian_0.35.0+20060710.4_all.deb ... Unpacking intltool-debian (0.35.0+20060710.4) ... Selecting previously unselected package po-debconf. Preparing to unpack .../po-debconf_1.0.19_all.deb ... Unpacking po-debconf (1.0.19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../libarchive-zip-perl_1.56-2_all.deb ... Unpacking libarchive-zip-perl (1.56-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../libfile-stripnondeterminism-perl_0.014-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (0.014-1) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../libtimedate-perl_2.3000-2_all.deb ... Unpacking libtimedate-perl (2.3000-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../dh-strip-nondeterminism_0.014-1_all.deb ... Unpacking dh-strip-nondeterminism (0.014-1) ... Selecting previously unselected package debhelper. Preparing to unpack .../debhelper_9.20151225ubuntu1_all.deb ... Unpacking debhelper (9.20151225ubuntu1) ... Selecting previously unselected package libtool. Preparing to unpack .../libtool_2.4.2-1.11_all.deb ... Unpacking libtool (2.4.2-1.11) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../dh-autoreconf_10_all.deb ... Unpacking dh-autoreconf (10) ... Selecting previously unselected package libglib2.0-bin. Preparing to unpack .../libglib2.0-bin_2.47.3-3_arm64.deb ... Unpacking libglib2.0-bin (2.47.3-3) ... Selecting previously unselected package libpcre16-3:arm64. Preparing to unpack .../libpcre16-3_2%3a8.35-7.1ubuntu1_arm64.deb ... Unpacking libpcre16-3:arm64 (2:8.35-7.1ubuntu1) ... Selecting previously unselected package libpcre32-3:arm64. Preparing to unpack .../libpcre32-3_2%3a8.35-7.1ubuntu1_arm64.deb ... Unpacking libpcre32-3:arm64 (2:8.35-7.1ubuntu1) ... Selecting previously unselected package libpcre3-dev:arm64. Preparing to unpack .../libpcre3-dev_2%3a8.35-7.1ubuntu1_arm64.deb ... Unpacking libpcre3-dev:arm64 (2:8.35-7.1ubuntu1) ... Selecting previously unselected package pkg-config. Preparing to unpack .../pkg-config_0.29-2ubuntu2_arm64.deb ... Unpacking pkg-config (0.29-2ubuntu2) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../zlib1g-dev_1%3a1.2.8.dfsg-2ubuntu4_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.2.8.dfsg-2ubuntu4) ... Selecting previously unselected package libglib2.0-dev. Preparing to unpack .../libglib2.0-dev_2.47.3-3_arm64.deb ... Unpacking libglib2.0-dev (2.47.3-3) ... Selecting previously unselected package libtinfo-dev:arm64. Preparing to unpack .../libtinfo-dev_6.0+20151024-2ubuntu1_arm64.deb ... Unpacking libtinfo-dev:arm64 (6.0+20151024-2ubuntu1) ... Selecting previously unselected package libreadline6-dev:arm64. Preparing to unpack .../libreadline6-dev_6.3-8ubuntu1_arm64.deb ... Unpacking libreadline6-dev:arm64 (6.3-8ubuntu1) ... Selecting previously unselected package libreadline-dev:arm64. Preparing to unpack .../libreadline-dev_6.3-8ubuntu1_arm64.deb ... Unpacking libreadline-dev:arm64 (6.3-8ubuntu1) ... Selecting previously unselected package sbuild-build-depends-exonerate-dummy. Preparing to unpack .../sbuild-build-depends-exonerate-dummy.deb ... Unpacking sbuild-build-depends-exonerate-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up groff-base (1.22.3-5) ... Setting up bsdmainutils (9.0.6ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libpipeline1:arm64 (1.4.1-2) ... Setting up man-db (2.7.5-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libpcrecpp0v5:arm64 (2:8.35-7.1ubuntu1) ... Setting up libsigsegv2:arm64 (2.10-4) ... Setting up libunistring0:arm64 (0.9.3-5.2ubuntu1) ... Setting up mime-support (3.59ubuntu1) ... Setting up libexpat1:arm64 (2.1.0-7) ... Setting up libpython2.7-stdlib:arm64 (2.7.11-2) ... Setting up python2.7 (2.7.11-2) ... Setting up libpython-stdlib:arm64 (2.7.11-1) ... Setting up python (2.7.11-1) ... Setting up libmagic1:arm64 (1:5.25-2ubuntu1) ... Setting up file (1:5.25-2ubuntu1) ... Setting up libasprintf0v5:arm64 (0.19.6-1ubuntu1) ... Setting up gettext-base (0.19.6-1ubuntu1) ... Setting up libelf1:arm64 (0.164-1) ... Setting up libglib2.0-0:arm64 (2.47.3-3) ... No schema files found: doing nothing. Setting up libglib2.0-data (2.47.3-3) ... Setting up libicu55:arm64 (55.1-6ubuntu1) ... Setting up libxml2:arm64 (2.9.2+zdfsg1-4ubuntu2) ... Setting up m4 (1.4.17-5) ... Setting up autoconf (2.69-9) ... Setting up autotools-dev (20150820.1) ... Setting up automake (1:1.15-1ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up autopoint (0.19.6-1ubuntu1) ... Setting up libcroco3:arm64 (0.6.11-1) ... Setting up gettext (0.19.6-1ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up po-debconf (1.0.19) ... Setting up libarchive-zip-perl (1.56-2) ... Setting up libfile-stripnondeterminism-perl (0.014-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libtool (2.4.2-1.11) ... Setting up libglib2.0-bin (2.47.3-3) ... Setting up libpcre16-3:arm64 (2:8.35-7.1ubuntu1) ... Setting up libpcre32-3:arm64 (2:8.35-7.1ubuntu1) ... Setting up libpcre3-dev:arm64 (2:8.35-7.1ubuntu1) ... Setting up pkg-config (0.29-2ubuntu2) ... Setting up zlib1g-dev:arm64 (1:1.2.8.dfsg-2ubuntu4) ... Setting up libglib2.0-dev (2.47.3-3) ... Setting up libtinfo-dev:arm64 (6.0+20151024-2ubuntu1) ... Setting up libreadline6-dev:arm64 (6.3-8ubuntu1) ... Setting up libreadline-dev:arm64 (6.3-8ubuntu1) ... Setting up debhelper (9.20151225ubuntu1) ... Setting up dh-autoreconf (10) ... Setting up sbuild-build-depends-exonerate-dummy (0.invalid.0) ... Setting up dh-strip-nondeterminism (0.014-1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 3.19.0-31-generic arm64 (aarch64) Toolchain package versions: binutils_2.25.90.20160101-1ubuntu2 dpkg-dev_1.18.3ubuntu1 g++-5_5.3.1-5ubuntu2 gcc-5_5.3.1-5ubuntu2 libc6-dev_2.21-0ubuntu5 libstdc++-5-dev_5.3.1-5ubuntu2 libstdc++6_5.3.1-5ubuntu2 linux-libc-dev_4.3.0-5.16 Package versions: adduser_3.113+nmu3ubuntu4 advancecomp_1.20-1 apt_1.1.10 apt-transport-https_1.1.10 autoconf_2.69-9 automake_1:1.15-1ubuntu1 autopoint_0.19.6-1ubuntu1 autotools-dev_20150820.1 base-files_9.4ubuntu3 base-passwd_3.5.39 bash_4.3-14ubuntu1 binutils_2.25.90.20160101-1ubuntu2 bsdmainutils_9.0.6ubuntu1 bsdutils_1:2.27.1-1ubuntu3 build-essential_12.1ubuntu2 bzip2_1.0.6-8 ca-certificates_20150426ubuntu1 coreutils_8.23-4ubuntu2 cpp_4:5.2.1-16ubuntu2 cpp-5_5.3.1-5ubuntu2 dash_0.5.7-4ubuntu2 debconf_1.5.58ubuntu1 debhelper_9.20151225ubuntu1 debianutils_4.5.1 dh-autoreconf_10 dh-strip-nondeterminism_0.014-1 diffutils_1:3.3-3 dmsetup_2:1.02.110-1ubuntu2 dpkg_1.18.3ubuntu1 dpkg-dev_1.18.3ubuntu1 e2fslibs_1.42.13-1ubuntu1 e2fsprogs_1.42.13-1ubuntu1 fakeroot_1.20.2-1ubuntu1 file_1:5.25-2ubuntu1 findutils_4.4.2-10 g++_4:5.2.1-16ubuntu2 g++-5_5.3.1-5ubuntu2 gcc_4:5.2.1-16ubuntu2 gcc-5_5.3.1-5ubuntu2 gcc-5-base_5.3.1-5ubuntu2 gettext_0.19.6-1ubuntu1 gettext-base_0.19.6-1ubuntu1 gnupg_1.4.19-6ubuntu1 gpgv_1.4.19-6ubuntu1 grep_2.22-1 groff-base_1.22.3-5 gzip_1.6-4ubuntu1 hostname_3.16ubuntu2 init_1.24ubuntu2 initscripts_2.88dsf-59.2ubuntu3 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-2 libapparmor1_2.10-0ubuntu10 libapt-pkg4.16_1.0.10.2ubuntu1 libapt-pkg5.0_1.1.10 libarchive-zip-perl_1.56-2 libasan2_5.3.1-5ubuntu2 libasn1-8-heimdal_1.6~rc2+dfsg-10ubuntu1 libasprintf0v5_0.19.6-1ubuntu1 libatomic1_5.3.1-5ubuntu2 libattr1_1:2.4.47-2 libaudit-common_1:2.4.4-4ubuntu1 libaudit1_1:2.4.4-4ubuntu1 libblkid1_2.27.1-1ubuntu3 libbz2-1.0_1.0.6-8 libc-bin_2.21-0ubuntu5 libc-dev-bin_2.21-0ubuntu5 libc6_2.21-0ubuntu5 libc6-dev_2.21-0ubuntu5 libcap2_1:2.24-12 libcap2-bin_1:2.24-12 libcc1-0_5.3.1-5ubuntu2 libcomerr2_1.42.13-1ubuntu1 libcroco3_0.6.11-1 libcryptsetup4_2:1.6.6-5ubuntu2 libcurl3-gnutls_7.45.0-1ubuntu1 libdb5.3_5.3.28-11 libdbus-1-3_1.10.6-1ubuntu1 libdebconfclient0_0.198ubuntu1 libdevmapper1.02.1_2:1.02.110-1ubuntu2 libdpkg-perl_1.18.3ubuntu1 libelf1_0.164-1 libexpat1_2.1.0-7 libfakeroot_1.20.2-1ubuntu1 libfdisk1_2.27.1-1ubuntu3 libffi6_3.2.1-4 libfile-stripnondeterminism-perl_0.014-1 libgcc-5-dev_5.3.1-5ubuntu2 libgcc1_1:5.3.1-5ubuntu2 libgcrypt20_1.6.4-4 libgdbm3_1.8.3-13.1 libglib2.0-0_2.47.3-3 libglib2.0-bin_2.47.3-3 libglib2.0-data_2.47.3-3 libglib2.0-dev_2.47.3-3 libgmp10_2:6.1.0+dfsg-2 libgnutls-deb0-28_3.3.18-1ubuntu1 libgomp1_5.3.1-5ubuntu2 libgpg-error0_1.21-1 libgssapi-krb5-2_1.13.2+dfsg-4 libgssapi3-heimdal_1.6~rc2+dfsg-10ubuntu1 libhcrypto4-heimdal_1.6~rc2+dfsg-10ubuntu1 libheimbase1-heimdal_1.6~rc2+dfsg-10ubuntu1 libheimntlm0-heimdal_1.6~rc2+dfsg-10ubuntu1 libhogweed4_3.1.1-4 libhx509-5-heimdal_1.6~rc2+dfsg-10ubuntu1 libicu55_55.1-6ubuntu1 libidn11_1.32-3ubuntu1 libisl13_0.14-2 libisl15_0.15-3 libitm1_5.3.1-5ubuntu2 libk5crypto3_1.13.2+dfsg-4 libkeyutils1_1.5.9-8ubuntu1 libkmod2_21-1ubuntu1 libkrb5-26-heimdal_1.6~rc2+dfsg-10ubuntu1 libkrb5-3_1.13.2+dfsg-4 libkrb5support0_1.13.2+dfsg-4 libldap-2.4-2_2.4.41+dfsg-1ubuntu3 liblockfile-bin_1.09-6ubuntu1 liblockfile1_1.09-6ubuntu1 liblzma5_5.1.1alpha+20120614-2ubuntu2 libmagic1_1:5.25-2ubuntu1 libmount1_2.27.1-1ubuntu3 libmpc3_1.0.3-1 libmpfr4_3.1.3-2 libncurses5_6.0+20151024-2ubuntu1 libncursesw5_6.0+20151024-2ubuntu1 libnettle6_3.1.1-4 libnih-dbus1_1.0.3-4.3ubuntu1 libnih1_1.0.3-4.3ubuntu1 libp11-kit0_0.23.2-3 libpam-modules_1.1.8-3.1ubuntu3 libpam-modules-bin_1.1.8-3.1ubuntu3 libpam-runtime_1.1.8-3.1ubuntu3 libpam0g_1.1.8-3.1ubuntu3 libpcre16-3_2:8.35-7.1ubuntu1 libpcre3_2:8.35-7.1ubuntu1 libpcre3-dev_2:8.35-7.1ubuntu1 libpcre32-3_2:8.35-7.1ubuntu1 libpcrecpp0v5_2:8.35-7.1ubuntu1 libperl5.22_5.22.1-3 libpipeline1_1.4.1-2 libpng12-0_1.2.54-1ubuntu1 libprocps3_1:3.3.9-1ubuntu8 libprocps4_2:3.3.10-4ubuntu1 libpython-stdlib_2.7.11-1 libpython2.7-minimal_2.7.11-2 libpython2.7-stdlib_2.7.11-2 libreadline-dev_6.3-8ubuntu1 libreadline6_6.3-8ubuntu1 libreadline6-dev_6.3-8ubuntu1 libroken18-heimdal_1.6~rc2+dfsg-10ubuntu1 librtmp1_2.4+20150115.gita107cef-1build1 libsasl2-2_2.1.26.dfsg1-14 libsasl2-modules-db_2.1.26.dfsg1-14 libseccomp2_2.2.3-2ubuntu3 libselinux1_2.4-3 libsemanage-common_2.4-3 libsemanage1_2.4-3 libsepol1_2.4-2 libsigsegv2_2.10-4 libslang2_2.3.0-2ubuntu1 libsmartcols1_2.27.1-1ubuntu3 libsqlite3-0_3.10.0-1 libss2_1.42.13-1ubuntu1 libssl1.0.0_1.0.2e-1ubuntu1 libstdc++-5-dev_5.3.1-5ubuntu2 libstdc++6_5.3.1-5ubuntu2 libsystemd0_228-3ubuntu1 libtasn1-6_4.7-3 libtimedate-perl_2.3000-2 libtinfo-dev_6.0+20151024-2ubuntu1 libtinfo5_6.0+20151024-2ubuntu1 libtool_2.4.2-1.11 libubsan0_5.3.1-5ubuntu2 libudev1_228-3ubuntu1 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-28 libustr-1.0-1_1.0.4-5 libuuid1_2.27.1-1ubuntu3 libwind0-heimdal_1.6~rc2+dfsg-10ubuntu1 libxml2_2.9.2+zdfsg1-4ubuntu2 linux-libc-dev_4.3.0-5.16 lockfile-progs_0.1.17 login_1:4.1.5.1-1.1ubuntu7 lsb-base_9.20160110 m4_1.4.17-5 make_4.0-8.2 man-db_2.7.5-1 mawk_1.3.3-17ubuntu2 mime-support_3.59ubuntu1 mount_2.27.1-1ubuntu3 multiarch-support_2.21-0ubuntu5 ncurses-base_6.0+20151024-2ubuntu1 ncurses-bin_6.0+20151024-2ubuntu1 openssl_1.0.2e-1ubuntu1 optipng_0.7.5-1 passwd_1:4.1.5.1-1.1ubuntu7 patch_2.7.5-1 perl_5.22.1-3 perl-base_5.22.1-3 perl-modules-5.22_5.22.1-3 pkg-config_0.29-2ubuntu2 pkg-create-dbgsym_0.70 pkgbinarymangler_128 po-debconf_1.0.19 policyrcd-script-zg2_0.1-2 procps_2:3.3.10-4ubuntu1 python_2.7.11-1 python-minimal_2.7.11-1 python2.7_2.7.11-2 python2.7-minimal_2.7.11-2 readline-common_6.3-8ubuntu1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-exonerate-dummy_0.invalid.0 sed_4.2.2-6.1 sensible-utils_0.0.9 systemd_228-3ubuntu1 systemd-sysv_228-3ubuntu1 sysv-rc_2.88dsf-59.2ubuntu3 sysvinit-utils_2.88dsf-59.2ubuntu3 tar_1.28-2.1 tzdata_2015g-1 ubuntu-keyring_2012.05.19 udev_228-3ubuntu1 util-linux_2.27.1-1ubuntu3 xz-utils_5.1.1alpha+20120614-2ubuntu2 zlib1g_1:1.2.8.dfsg-2ubuntu4 zlib1g-dev_1:1.2.8.dfsg-2ubuntu4 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: Signature made Mon Jan 11 10:53:23 2016 UTC using RSA key ID D1C646D1 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./exonerate_2.2.0-7.dsc dpkg-source: info: extracting exonerate in exonerate-2.2.0 dpkg-source: info: unpacking exonerate_2.2.0.orig.tar.gz dpkg-source: info: unpacking exonerate_2.2.0-7.debian.tar.xz dpkg-source: info: applying fix_build-as-needed.patch dpkg-source: info: applying manpages.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying manpagesyntax.patch Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── DEB_BUILD_OPTIONS=parallel=4 HOME=/home/buildd LANG=C LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/«PKGBUILDDIR» SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /«CHROOT» su buildd -s /bin/sh -c cd '/«PKGBUILDDIR»' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ───────────────── dpkg-buildpackage: source package exonerate dpkg-buildpackage: source version 2.2.0-7 dpkg-buildpackage: source distribution unstable dpkg-source --before-build exonerate-2.2.0 dpkg-buildpackage: host architecture arm64 fakeroot debian/rules clean dh clean --with autoreconf dh_testdir debian/rules override_dh_auto_clean make[1]: Entering directory '/«PKGBUILDDIR»' dh_auto_clean rm -rf codegen make[1]: Leaving directory '/«PKGBUILDDIR»' dh_autoreconf_clean dh_clean debian/rules build-arch dh build-arch --with autoreconf dh_testdir -a debian/rules override_dh_autoreconf make[1]: Entering directory '/«PKGBUILDDIR»' dh_autoreconf --as-needed aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in' Unescaped left brace in regex is deprecated, passed through in regex; marked by <-- HERE in m/\${ <-- HERE ([^ \t=:+{}]+)}/ at /usr/bin/automake line 3936. automake: warning: autoconf input should be named 'configure.ac', not 'configure.in' configure.in:8: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated. For more info, see: configure.in:8: http://www.gnu.org/software/automake/manual/automake.html#Modernize-AM_005fINIT_005fAUTOMAKE-invocation configure.in:9: installing './compile' src/bsdp/Makefile.am:6: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') src/bsdp/Makefile.am: installing './depcomp' automake: warning: autoconf input should be named 'configure.ac', not 'configure.in' parallel-tests: installing './test-driver' src/c4/Makefile.am:7: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') src/comparison/Makefile.am:7: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') src/database/Makefile.am:5: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') src/general/Makefile.am:7: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') src/hub/Makefile.am:5: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') src/model/Makefile.am:11: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') src/program/Makefile.am:4: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') src/sdp/Makefile.am:7: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') src/sequence/Makefile.am:6: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') src/util/Makefile.am:12: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') make[1]: Leaving directory '/«PKGBUILDDIR»' dh_auto_configure -a ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --libexecdir=\${prefix}/lib/aarch64-linux-gnu --disable-maintainer-mode --disable-dependency-tracking configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking for style of include used by make... GNU checking dependency style of gcc... none checking whether make sets $(MAKE)... (cached) yes checking for an ANSI C-conforming const... yes checking for inline... inline checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking math.h usability... yes checking math.h presence... yes checking for math.h... yes checking for strings.h... (cached) yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking for sys/stat.h... (cached) yes checking for sys/types.h... (cached) yes checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking for unistd.h... (cached) yes checking build system type... aarch64-unknown-linux-gnu checking host system type... aarch64-unknown-linux-gnu Set host to aarch64-unknown-linux-gnu aarch64-unknown-linux-gnu Set source_root_dir to /«PKGBUILDDIR» ---------------------------------------------------------------- checking for socklen_t... yes checking for pkg-config... /usr/bin/pkg-config Using GLIB-2 Turning assertions off Turning paranoid options off Not using options for profiling with gprof Not using options for analysis with gcov Adding support for LARGE FILES (>2Gb) for a 32 bit system Using COMPILED C4 MODELS Installing UTILITIES Using PTHREADS ---------------------------------------------------------------- checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating doc/Makefile config.status: creating doc/man/Makefile config.status: creating doc/man/man1/Makefile config.status: creating src/Makefile config.status: creating src/general/Makefile config.status: creating src/sequence/Makefile config.status: creating src/database/Makefile config.status: creating src/struct/Makefile config.status: creating src/comparison/Makefile config.status: creating src/c4/Makefile config.status: creating src/bsdp/Makefile config.status: creating src/sdp/Makefile config.status: creating src/hub/Makefile config.status: creating src/model/Makefile config.status: creating src/program/Makefile config.status: creating src/util/Makefile config.status: creating test/Makefile config.status: creating test/util/Makefile config.status: creating test/ipcress/Makefile config.status: creating test/exonerate/Makefile config.status: creating test/data/Makefile config.status: creating test/data/cdna/Makefile config.status: creating test/data/protein/Makefile config.status: executing depfiles commands configure: WARNING: unrecognized options: --disable-maintainer-mode dh_auto_build -a make -j1 make[1]: Entering directory '/«PKGBUILDDIR»' Making all in doc make[2]: Entering directory '/«PKGBUILDDIR»/doc' Making all in man make[3]: Entering directory '/«PKGBUILDDIR»/doc/man' Making all in man1 make[4]: Entering directory '/«PKGBUILDDIR»/doc/man/man1' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/«PKGBUILDDIR»/doc/man/man1' make[4]: Entering directory '/«PKGBUILDDIR»/doc/man' make[4]: Nothing to be done for 'all-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/doc/man' make[3]: Leaving directory '/«PKGBUILDDIR»/doc/man' make[3]: Entering directory '/«PKGBUILDDIR»/doc' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/«PKGBUILDDIR»/doc' make[2]: Leaving directory '/«PKGBUILDDIR»/doc' Making all in src make[2]: Entering directory '/«PKGBUILDDIR»/src' Making all in struct make[3]: Entering directory '/«PKGBUILDDIR»/src/struct' gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o fsm.test.o fsm.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o fsm.o fsm.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o recyclebin.o recyclebin.c recyclebin.c: In function 'RecycleBin_profile': recyclebin.c:133:9: warning: 'g_tree_traverse' is deprecated [-Wdeprecated-declarations] g_tree_traverse(global_recycle_bin_tree, ^ In file included from /usr/include/glib-2.0/glib.h:88:0, from recyclebin.h:23, from recyclebin.c:17: /usr/include/glib-2.0/glib/gtree.h:88:10: note: declared here void g_tree_traverse (GTree *tree, ^ gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o fsm.test fsm.test.o fsm.o recyclebin.o -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o matrix.test.o matrix.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o matrix.o matrix.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o matrix.test matrix.test.o matrix.o -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o pqueue.test.o pqueue.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o pqueue.o pqueue.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o pqueue.test pqueue.test.o pqueue.o recyclebin.o -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o slist.test.o slist.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o slist.o slist.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o slist.test slist.test.o slist.o recyclebin.o -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o rangetree.test.o rangetree.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o rangetree.o rangetree.c rangetree.c: In function 'RangeTree_insert_recent': rangetree.c:151:5: warning: 'g_tree_traverse' is deprecated [-Wdeprecated-declarations] g_tree_traverse(rt->recent_data, RangeTree_insert_recent_collect, ^ In file included from /usr/include/glib-2.0/glib.h:88:0, from rangetree.h:23, from rangetree.c:18: /usr/include/glib-2.0/glib/gtree.h:88:10: note: declared here void g_tree_traverse (GTree *tree, ^ gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o rangetree.test rangetree.test.o rangetree.o recyclebin.o -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o vfsm.test.o vfsm.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o vfsm.o vfsm.c In file included from /usr/include/glib-2.0/glib.h:62:0, from vfsm.h:19, from vfsm.c:25: vfsm.c: In function 'VFSM_info': vfsm.c:83:15: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 9 has type 'VFSM_Int {aka long unsigned int}' [-Wformat=] g_message("VFSM info:\n" ^ /usr/include/glib-2.0/glib/gmessages.h:158:32: note: in definition of macro 'g_message' __VA_ARGS__) ^ vfsm.c:83:15: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 10 has type 'VFSM_Int {aka long unsigned int}' [-Wformat=] g_message("VFSM info:\n" ^ /usr/include/glib-2.0/glib/gmessages.h:158:32: note: in definition of macro 'g_message' __VA_ARGS__) ^ vfsm.c:83:15: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 11 has type 'VFSM_Int {aka long unsigned int}' [-Wformat=] g_message("VFSM info:\n" ^ /usr/include/glib-2.0/glib/gmessages.h:158:32: note: in definition of macro 'g_message' __VA_ARGS__) ^ vfsm.c:83:15: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 12 has type 'VFSM_Int {aka long unsigned int}' [-Wformat=] g_message("VFSM info:\n" ^ /usr/include/glib-2.0/glib/gmessages.h:158:32: note: in definition of macro 'g_message' __VA_ARGS__) ^ vfsm.c:83:15: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 13 has type 'VFSM_Int {aka long unsigned int}' [-Wformat=] g_message("VFSM info:\n" ^ /usr/include/glib-2.0/glib/gmessages.h:158:32: note: in definition of macro 'g_message' __VA_ARGS__) ^ vfsm.c:107:17: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 3 has type 'VFSM_Int {aka long unsigned int}' [-Wformat=] g_print(" branch_size [%d] [%" VFSM_PRINT_FORMAT "]\n", ^ gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o vfsm.test vfsm.test.o vfsm.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o recyclebin.test.o recyclebin.test.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o recyclebin.test recyclebin.test.o recyclebin.o -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o sparsecache.test.o sparsecache.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o sparsecache.o sparsecache.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o sparsecache.test sparsecache.test.o sparsecache.o -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o dejavu.test.o dejavu.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o dejavu.o dejavu.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o dejavu.test dejavu.test.o dejavu.o -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o bitarray.test.o bitarray.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o bitarray.o bitarray.c bitarray.c: In function 'BitArray_read': bitarray.c:83:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(ba->data, sizeof(guchar), size, fp); ^ bitarray.c: In function 'BitArray_read_int': bitarray.c:189:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&num, sizeof(guint64), 1, fp); ^ gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o bitarray.test bitarray.test.o bitarray.o -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o splaytree.test.o splaytree.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o splaytree.o splaytree.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o splaytree.test splaytree.test.o splaytree.o recyclebin.o -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o noitree.test.o noitree.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o noitree.o noitree.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o noitree.test noitree.test.o noitree.o recyclebin.o splaytree.o -lglib-2.0 -lpthread make[3]: Leaving directory '/«PKGBUILDDIR»/src/struct' Making all in general make[3]: Entering directory '/«PKGBUILDDIR»/src/general' gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o argument.test.o argument.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o argument.o argument.c argument.c: In function 'ArgumentParse_boolean': argument.c:138:9: warning: 'g_strcasecmp' is deprecated [-Wdeprecated-declarations] if(!g_strcasecmp(arg_string, true_string[i])) ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from argument.h:26, from argument.c:16: /usr/include/glib-2.0/glib/gstrfuncs.h:200:23: note: declared here gint g_strcasecmp (const gchar *s1, ^ argument.c:140:9: warning: 'g_strcasecmp' is deprecated [-Wdeprecated-declarations] if(!g_strcasecmp(arg_string, false_string[i])) ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from argument.h:26, from argument.c:16: /usr/include/glib-2.0/glib/gstrfuncs.h:200:23: note: declared here gint g_strcasecmp (const gchar *s1, ^ argument.c: In function 'Argument_process': argument.c:499:5: warning: 'g_tree_traverse' is deprecated [-Wdeprecated-declarations] g_tree_traverse(arg->option_registry, Argument_set_env_var_func, ^ In file included from /usr/include/glib-2.0/glib.h:88:0, from argument.h:26, from argument.c:16: /usr/include/glib-2.0/glib/gtree.h:88:10: note: declared here void g_tree_traverse (GTree *tree, ^ argument.c:556:5: warning: 'g_tree_traverse' is deprecated [-Wdeprecated-declarations] g_tree_traverse(arg->option_registry, ^ In file included from /usr/include/glib-2.0/glib.h:88:0, from argument.h:26, from argument.c:16: /usr/include/glib-2.0/glib/gtree.h:88:10: note: declared here void g_tree_traverse (GTree *tree, ^ gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o argument.test argument.test.o argument.o -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o lineparse.test.o lineparse.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o lineparse.o lineparse.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o lineparse.test lineparse.test.o lineparse.o -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o compoundfile.test.o compoundfile.test.c In file included from compoundfile.test.c:17:0: compoundfile.test.c: In function 'main': compoundfile.h:49:33: warning: format '%lld' expects argument of type 'long long int', but argument 3 has type 'CompoundFile_Pos {aka long int}' [-Wformat=] #define CompoundFile_Pos_format "%lld" ^ compoundfile.h:55:39: note: in expansion of macro 'CompoundFile_Pos_format' CompoundFile_Pragma fprintf((fp), CompoundFile_Pos_format, (pos)) ^ compoundfile.test.c:61:5: note: in expansion of macro 'CompoundFile_Pos_print' CompoundFile_Pos_print(stdout, total_length); ^ compoundfile.h:49:33: warning: format '%lld' expects argument of type 'long long int', but argument 3 has type 'CompoundFile_Pos {aka long int}' [-Wformat=] #define CompoundFile_Pos_format "%lld" ^ compoundfile.h:55:39: note: in expansion of macro 'CompoundFile_Pos_format' CompoundFile_Pragma fprintf((fp), CompoundFile_Pos_format, (pos)) ^ compoundfile.test.c:63:5: note: in expansion of macro 'CompoundFile_Pos_print' CompoundFile_Pos_print(stdout, CompoundFile_get_length(cf)); ^ gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o compoundfile.o compoundfile.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o compoundfile.test compoundfile.test.o compoundfile.o -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o socket.test.o socket.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o socket.o socket.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o socket.test socket.test.o socket.o -lglib-2.0 -lpthread make[3]: Leaving directory '/«PKGBUILDDIR»/src/general' Making all in sequence make[3]: Entering directory '/«PKGBUILDDIR»/src/sequence' gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o sequence.test.o sequence.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o sequence.o sequence.c sequence.c: In function 'Sequence_destroy_annotation_tree': sequence.c:97:5: warning: 'g_tree_traverse' is deprecated [-Wdeprecated-declarations] g_tree_traverse(tree, Sequence_destroy_annotation_data, ^ In file included from /usr/include/glib-2.0/glib.h:88:0, from sequence.h:24, from sequence.c:21: /usr/include/glib-2.0/glib/gtree.h:88:10: note: declared here void g_tree_traverse (GTree *tree, ^ gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o alphabet.o alphabet.c alphabet.c: In function 'Alphabet_name_get_type': alphabet.c:316:9: warning: 'g_strcasecmp' is deprecated [-Wdeprecated-declarations] if(!g_strcasecmp(name, dna_string[i])) ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from alphabet.h:24, from alphabet.c:19: /usr/include/glib-2.0/glib/gstrfuncs.h:200:23: note: declared here gint g_strcasecmp (const gchar *s1, ^ alphabet.c:319:9: warning: 'g_strcasecmp' is deprecated [-Wdeprecated-declarations] if(!g_strcasecmp(name, protein_string[i])) ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from alphabet.h:24, from alphabet.c:19: /usr/include/glib-2.0/glib/gstrfuncs.h:200:23: note: declared here gint g_strcasecmp (const gchar *s1, ^ alphabet.c:322:9: warning: 'g_strcasecmp' is deprecated [-Wdeprecated-declarations] if(!g_strcasecmp(name, unknown_string[i])) ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from alphabet.h:24, from alphabet.c:19: /usr/include/glib-2.0/glib/gstrfuncs.h:200:23: note: declared here gint g_strcasecmp (const gchar *s1, ^ gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o translate.o translate.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o splice.o splice.c splice.c: In function 'SplicePredictor_parse_data': splice.c:146:17: warning: 'g_strcasecmp' is deprecated [-Wdeprecated-declarations] if(!g_strcasecmp(word, "splice")) ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from splice.h:23, from splice.c:22: /usr/include/glib-2.0/glib/gstrfuncs.h:200:23: note: declared here gint g_strcasecmp (const gchar *s1, ^ splice.c: In function 'SplicePredictor_add_5SS_data': splice.c:195:5: warning: 'g_strcasecmp' is deprecated [-Wdeprecated-declarations] if((!path) || (!strlen(path)) || (!g_strcasecmp(path, "primate"))) ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from splice.h:23, from splice.c:22: /usr/include/glib-2.0/glib/gstrfuncs.h:200:23: note: declared here gint g_strcasecmp (const gchar *s1, ^ splice.c: In function 'SplicePredictor_add_3SS_data': splice.c:203:5: warning: 'g_strcasecmp' is deprecated [-Wdeprecated-declarations] if((!path) || (!strlen(path)) || (!g_strcasecmp(path, "primate"))) ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from splice.h:23, from splice.c:22: /usr/include/glib-2.0/glib/gstrfuncs.h:200:23: note: declared here gint g_strcasecmp (const gchar *s1, ^ gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o sequence.test sequence.test.o sequence.o alphabet.o translate.o splice.o ../../src/struct/matrix.o ../../src/struct/sparsecache.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o submat.test.o submat.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o submat.o submat.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o submat.test submat.test.o submat.o -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o translate.test.o translate.test.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o translate.test translate.test.o translate.o ../../src/general/argument.o -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o splice.test.o splice.test.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o splice.test splice.test.o splice.o ../../src/struct/matrix.o ../../src/struct/sparsecache.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o alphabet.test.o alphabet.test.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o alphabet.test alphabet.test.o alphabet.o ../../src/general/argument.o -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o codonsubmat.test.o codonsubmat.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o codonsubmat.o codonsubmat.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o codonsubmat.test codonsubmat.test.o codonsubmat.o ../../src/general/argument.o -lm -lglib-2.0 -lpthread make[3]: Leaving directory '/«PKGBUILDDIR»/src/sequence' Making all in comparison make[3]: Entering directory '/«PKGBUILDDIR»/src/comparison' gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/struct -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o wordhood.test.o wordhood.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/struct -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o wordhood.o wordhood.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o wordhood.test wordhood.test.o wordhood.o ../../src/sequence/submat.o ../../src/sequence/codonsubmat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/struct -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o hspset.test.o hspset.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/struct -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o hspset.o hspset.c hspset.c: In function 'HSP_Display_print': hspset.c:522:13: warning: field precision specifier '.*' expects argument of type 'int', but argument 2 has type 'gsize {aka long unsigned int}' [-Wformat=] g_print(" query:[%.*s]\n [%.*s]\ntarget:[%.*s]\n", ^ hspset.c:522:13: warning: field precision specifier '.*' expects argument of type 'int', but argument 4 has type 'gsize {aka long unsigned int}' [-Wformat=] hspset.c:522:13: warning: field precision specifier '.*' expects argument of type 'int', but argument 6 has type 'gsize {aka long unsigned int}' [-Wformat=] hspset.c: In function 'HSP_Display_insert': hspset.c:590:9: warning: 'g_strdown' is deprecated [-Wdeprecated-declarations] g_strdown(query_str); ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from hspset.h:26, from hspset.c:20: /usr/include/glib-2.0/glib/gstrfuncs.h:207:23: note: declared here gchar* g_strdown (gchar *string); ^ hspset.c:591:9: warning: 'g_strdown' is deprecated [-Wdeprecated-declarations] g_strdown(target_str); ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from hspset.h:26, from hspset.c:20: /usr/include/glib-2.0/glib/gstrfuncs.h:207:23: note: declared here gchar* g_strdown (gchar *string); ^ hspset.c:593:9: warning: 'g_strup' is deprecated [-Wdeprecated-declarations] g_strup(query_str); ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from hspset.h:26, from hspset.c:20: /usr/include/glib-2.0/glib/gstrfuncs.h:209:23: note: declared here gchar* g_strup (gchar *string); ^ hspset.c:594:9: warning: 'g_strup' is deprecated [-Wdeprecated-declarations] g_strup(target_str); ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from hspset.h:26, from hspset.c:20: /usr/include/glib-2.0/glib/gstrfuncs.h:209:23: note: declared here gchar* g_strup (gchar *string); ^ gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/struct -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o match.o match.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o hspset.test hspset.test.o hspset.o match.o wordhood.o ../../src/sequence/submat.o ../../src/sequence/codonsubmat.o ../../src/struct/pqueue.o ../../src/struct/recyclebin.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/struct -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o pcr.test.o pcr.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/struct -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o pcr.o pcr.c pcr.c: In function 'PCR_Match_allocate': pcr.c:31:9: warning: 'g_mem_chunk_alloc' is deprecated [-Wdeprecated-declarations] pcr_match = g_chunk_new(PCR_Match, pcr->match_mem_chunk); ^ In file included from /usr/include/glib-2.0/glib.h:102:0, from pcr.h:23, from pcr.c:16: /usr/include/glib-2.0/glib/deprecated/gallocator.h:50:17: note: declared here gpointer g_mem_chunk_alloc (GMemChunk *mem_chunk); ^ pcr.c: In function 'PCR_Probe_create': pcr.c:59:5: warning: 'g_mem_chunk_alloc' is deprecated [-Wdeprecated-declarations] register PCR_Probe *pcr_probe = g_chunk_new(PCR_Probe, ^ In file included from /usr/include/glib-2.0/glib.h:102:0, from pcr.h:23, from pcr.c:16: /usr/include/glib-2.0/glib/deprecated/gallocator.h:50:17: note: declared here gpointer g_mem_chunk_alloc (GMemChunk *mem_chunk); ^ pcr.c: In function 'PCR_Probe_destroy': pcr.c:69:5: warning: 'g_mem_chunk_free' is deprecated [-Wdeprecated-declarations] g_mem_chunk_free(pcr->probe_mem_chunk, pcr_probe); ^ In file included from /usr/include/glib-2.0/glib.h:102:0, from pcr.h:23, from pcr.c:16: /usr/include/glib-2.0/glib/deprecated/gallocator.h:54:17: note: declared here void g_mem_chunk_free (GMemChunk *mem_chunk, ^ pcr.c: In function 'PCR_Sensor_create': pcr.c:155:5: warning: 'g_mem_chunk_alloc' is deprecated [-Wdeprecated-declarations] register PCR_Sensor *pcr_sensor = g_chunk_new(PCR_Sensor, ^ In file included from /usr/include/glib-2.0/glib.h:102:0, from pcr.h:23, from pcr.c:16: /usr/include/glib-2.0/glib/deprecated/gallocator.h:50:17: note: declared here gpointer g_mem_chunk_alloc (GMemChunk *mem_chunk); ^ pcr.c: In function 'PCR_Sensor_destroy': pcr.c:174:5: warning: 'g_mem_chunk_free' is deprecated [-Wdeprecated-declarations] g_mem_chunk_free(pcr->sensor_mem_chunk, pcr_sensor); ^ In file included from /usr/include/glib-2.0/glib.h:102:0, from pcr.h:23, from pcr.c:16: /usr/include/glib-2.0/glib/deprecated/gallocator.h:54:17: note: declared here void g_mem_chunk_free (GMemChunk *mem_chunk, ^ pcr.c: In function 'PCR_Primer_create': pcr.c:252:5: warning: 'g_strup' is deprecated [-Wdeprecated-declarations] g_strup(pcr_primer->forward); ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from pcr.h:23, from pcr.c:16: /usr/include/glib-2.0/glib/gstrfuncs.h:209:23: note: declared here gchar* g_strup (gchar *string); ^ pcr.c:253:5: warning: 'g_strup' is deprecated [-Wdeprecated-declarations] g_strup(pcr_primer->revcomp); ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from pcr.h:23, from pcr.c:16: /usr/include/glib-2.0/glib/gstrfuncs.h:209:23: note: declared here gchar* g_strup (gchar *string); ^ pcr.c: In function 'PCR_create': pcr.c:357:5: warning: 'g_mem_chunk_new' is deprecated [-Wdeprecated-declarations] pcr->sensor_mem_chunk = g_mem_chunk_new("PCR_Sensor", ^ In file included from /usr/include/glib-2.0/glib.h:102:0, from pcr.h:23, from pcr.c:16: /usr/include/glib-2.0/glib/deprecated/gallocator.h:43:17: note: declared here GMemChunk * g_mem_chunk_new (const gchar *name, ^ pcr.c:363:5: warning: 'g_mem_chunk_new' is deprecated [-Wdeprecated-declarations] pcr->probe_mem_chunk = g_mem_chunk_new("PCR_Probe", ^ In file included from /usr/include/glib-2.0/glib.h:102:0, from pcr.h:23, from pcr.c:16: /usr/include/glib-2.0/glib/deprecated/gallocator.h:43:17: note: declared here GMemChunk * g_mem_chunk_new (const gchar *name, ^ pcr.c:366:5: warning: 'g_mem_chunk_new' is deprecated [-Wdeprecated-declarations] pcr->match_mem_chunk = g_mem_chunk_new("PCR_Match", ^ In file included from /usr/include/glib-2.0/glib.h:102:0, from pcr.h:23, from pcr.c:16: /usr/include/glib-2.0/glib/deprecated/gallocator.h:43:17: note: declared here GMemChunk * g_mem_chunk_new (const gchar *name, ^ pcr.c: In function 'PCR_destroy': pcr.c:381:5: warning: 'g_mem_chunk_destroy' is deprecated [-Wdeprecated-declarations] g_mem_chunk_destroy(pcr->sensor_mem_chunk); ^ In file included from /usr/include/glib-2.0/glib.h:102:0, from pcr.h:23, from pcr.c:16: /usr/include/glib-2.0/glib/deprecated/gallocator.h:48:17: note: declared here void g_mem_chunk_destroy (GMemChunk *mem_chunk); ^ pcr.c:383:5: warning: 'g_mem_chunk_destroy' is deprecated [-Wdeprecated-declarations] g_mem_chunk_destroy(pcr->probe_mem_chunk); ^ In file included from /usr/include/glib-2.0/glib.h:102:0, from pcr.h:23, from pcr.c:16: /usr/include/glib-2.0/glib/deprecated/gallocator.h:48:17: note: declared here void g_mem_chunk_destroy (GMemChunk *mem_chunk); ^ pcr.c:384:5: warning: 'g_mem_chunk_destroy' is deprecated [-Wdeprecated-declarations] g_mem_chunk_destroy(pcr->match_mem_chunk); ^ In file included from /usr/include/glib-2.0/glib.h:102:0, from pcr.h:23, from pcr.c:16: /usr/include/glib-2.0/glib/deprecated/gallocator.h:48:17: note: declared here void g_mem_chunk_destroy (GMemChunk *mem_chunk); ^ gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o pcr.test pcr.test.o pcr.o wordhood.o ../../src/sequence/submat.o ../../src/sequence/codonsubmat.o ../../src/struct/fsm.o ../../src/struct/slist.o ../../src/struct/recyclebin.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/struct -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o comparison.test.o comparison.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/struct -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o comparison.o comparison.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o comparison.test comparison.test.o comparison.o hspset.o match.o wordhood.o ../../src/sequence/submat.o ../../src/sequence/codonsubmat.o ../../src/struct/recyclebin.o ../../src/struct/pqueue.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/struct -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o match.test.o match.test.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o match.test match.test.o match.o ../../src/sequence/submat.o ../../src/sequence/codonsubmat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/struct -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o seeder.test.o seeder.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/struct -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o seeder.o seeder.c seeder.c: In function 'Seeder_decide_fsm_type': seeder.c:261:5: warning: 'g_strcasecmp' is deprecated [-Wdeprecated-declarations] if(!g_strcasecmp(force_fsm, "none")) ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from seeder.h:23, from seeder.c:16: /usr/include/glib-2.0/glib/gstrfuncs.h:200:23: note: declared here gint g_strcasecmp (const gchar *s1, ^ seeder.c:266:5: warning: 'g_strcasecmp' is deprecated [-Wdeprecated-declarations] if(!g_strcasecmp(force_fsm, "normal")) ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from seeder.h:23, from seeder.c:16: /usr/include/glib-2.0/glib/gstrfuncs.h:200:23: note: declared here gint g_strcasecmp (const gchar *s1, ^ seeder.c:268:5: warning: 'g_strcasecmp' is deprecated [-Wdeprecated-declarations] if(!g_strcasecmp(force_fsm, "compact")) ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from seeder.h:23, from seeder.c:16: /usr/include/glib-2.0/glib/gstrfuncs.h:200:23: note: declared here gint g_strcasecmp (const gchar *s1, ^ In file included from /usr/include/glib-2.0/glib.h:62:0, from seeder.h:23, from seeder.c:16: seeder.c: In function 'Seeder_memory_info': seeder.c:416:15: warning: format '%d' expects argument of type 'int', but argument 4 has type 'gsize {aka long unsigned int}' [-Wformat=] g_message("Seeder Total = %dMb", Seeder_memory_usage(seeder)>>20); ^ /usr/include/glib-2.0/glib/gmessages.h:158:32: note: in definition of macro 'g_message' __VA_ARGS__) ^ seeder.c:419:19: warning: format '%d' expects argument of type 'int', but argument 4 has type 'gsize {aka long unsigned int}' [-Wformat=] g_message(" -> FSM memory = %dMb", ^ /usr/include/glib-2.0/glib/gmessages.h:158:32: note: in definition of macro 'g_message' __VA_ARGS__) ^ seeder.c:422:19: warning: format '%d' expects argument of type 'int', but argument 4 has type 'gsize {aka long unsigned int}' [-Wformat=] g_message(" -> VFSM memory = %dMb", ^ /usr/include/glib-2.0/glib/gmessages.h:158:32: note: in definition of macro 'g_message' __VA_ARGS__) ^ seeder.c:424:15: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] g_message(" -> QueryInfo memory = %dMb", ^ /usr/include/glib-2.0/glib/gmessages.h:158:32: note: in definition of macro 'g_message' __VA_ARGS__) ^ seeder.c:427:15: warning: format '%d' expects argument of type 'int', but argument 4 has type 'gsize {aka long unsigned int}' [-Wformat=] g_message(" -> Recycle_Wordinfo Memory = %dMb", ^ /usr/include/glib-2.0/glib/gmessages.h:158:32: note: in definition of macro 'g_message' __VA_ARGS__) ^ seeder.c:429:15: warning: format '%d' expects argument of type 'int', but argument 4 has type 'gsize {aka long unsigned int}' [-Wformat=] g_message(" -> Recycle_Seed Memory = %dMb", ^ /usr/include/glib-2.0/glib/gmessages.h:158:32: note: in definition of macro 'g_message' __VA_ARGS__) ^ seeder.c:431:15: warning: format '%d' expects argument of type 'int', but argument 4 has type 'gsize {aka long unsigned int}' [-Wformat=] g_message(" -> Recycle_Neighbour Memory = %dMb", ^ /usr/include/glib-2.0/glib/gmessages.h:158:32: note: in definition of macro 'g_message' __VA_ARGS__) ^ seeder.c:433:15: warning: format '%d' expects argument of type 'int', but argument 4 has type 'gsize {aka long unsigned int}' [-Wformat=] g_message(" -> Recycle_Context Memory = %dMb", ^ /usr/include/glib-2.0/glib/gmessages.h:158:32: note: in definition of macro 'g_message' __VA_ARGS__) ^ gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o seeder.test seeder.test.o seeder.o wordhood.o hspset.o match.o comparison.o ../../src/sequence/submat.o ../../src/sequence/codonsubmat.o ../../src/struct/recyclebin.o ../../src/struct/fsm.o ../../src/struct/vfsm.o ../../src/struct/pqueue.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread make[3]: Leaving directory '/«PKGBUILDDIR»/src/comparison' Making all in database make[3]: Entering directory '/«PKGBUILDDIR»/src/database' gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/struct -I../../src/general -I../../src/comparison -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o fastadb.test.o fastadb.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/struct -I../../src/general -I../../src/comparison -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o fastadb.o fastadb.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastadb.test fastadb.test.o fastadb.o ../../src/general/compoundfile.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/struct -I../../src/general -I../../src/comparison -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o fastapipe.test.o fastapipe.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/struct -I../../src/general -I../../src/comparison -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o fastapipe.o fastapipe.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastapipe.test fastapipe.test.o fastapipe.o fastadb.o ../../src/general/compoundfile.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/struct -I../../src/general -I../../src/comparison -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o dataset.test.o dataset.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/struct -I../../src/general -I../../src/comparison -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o dataset.o dataset.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o dataset.test dataset.test.o dataset.o fastadb.o ../../src/general/compoundfile.o ../../src/struct/bitarray.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/struct -I../../src/general -I../../src/comparison -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o index.test.o index.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/struct -I../../src/general -I../../src/comparison -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o index.o index.c In file included from /usr/include/glib-2.0/glib.h:62:0, from index.h:24, from index.c:21: index.c: In function 'Index_desaturate': index.c:295:15: warning: format '%lld' expects argument of type 'long long int', but argument 4 has type 'gint64 {aka long int}' [-Wformat=] g_message("Removed [%lld] words, [%lld] instances", ^ /usr/include/glib-2.0/glib/gmessages.h:158:32: note: in definition of macro 'g_message' __VA_ARGS__) ^ index.c:295:15: warning: format '%lld' expects argument of type 'long long int', but argument 5 has type 'gint64 {aka long int}' [-Wformat=] g_message("Removed [%lld] words, [%lld] instances", ^ /usr/include/glib-2.0/glib/gmessages.h:158:32: note: in definition of macro 'g_message' __VA_ARGS__) ^ index.c: In function 'Index_open': index.c:841:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(index->dataset_path, sizeof(gchar), ^ gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o index.test index.test.o index.o fastadb.o dataset.o ../../src/general/compoundfile.o ../../src/struct/bitarray.o ../../src/struct/vfsm.o ../../src/struct/pqueue.o ../../src/struct/recyclebin.o ../../src/struct/rangetree.o ../../src/struct/splaytree.o ../../src/struct/noitree.o ../../src/comparison/wordhood.o ../../src/comparison/hspset.o ../../src/comparison/match.o ../../src/sequence/submat.o ../../src/sequence/codonsubmat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread make[3]: Leaving directory '/«PKGBUILDDIR»/src/database' Making all in c4 make[3]: Entering directory '/«PKGBUILDDIR»/src/c4' gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o region.test.o region.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o region.o region.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o region.test region.test.o region.o -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o c4.test.o c4.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o c4.o c4.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o c4.test c4.test.o c4.o region.o ../../src/struct/matrix.o -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o alignment.test.o alignment.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o alignment.o alignment.c alignment.c: In function 'AlignmentView_add_SPLICE_SITE': alignment.c:655:9: warning: 'g_strdown' is deprecated [-Wdeprecated-declarations] g_strdown(qy_seq_string); ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from ../../src/comparison/match.h:23, from alignment.c:20: /usr/include/glib-2.0/glib/gstrfuncs.h:207:23: note: declared here gchar* g_strdown (gchar *string); ^ alignment.c:662:9: warning: 'g_strdown' is deprecated [-Wdeprecated-declarations] g_strdown(tg_seq_string); ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from ../../src/comparison/match.h:23, from alignment.c:20: /usr/include/glib-2.0/glib/gstrfuncs.h:207:23: note: declared here gchar* g_strdown (gchar *string); ^ alignment.c:672:13: warning: 'g_strdown' is deprecated [-Wdeprecated-declarations] g_strdown(qy_seq_string); ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from ../../src/comparison/match.h:23, from alignment.c:20: /usr/include/glib-2.0/glib/gstrfuncs.h:207:23: note: declared here gchar* g_strdown (gchar *string); ^ alignment.c:685:9: warning: 'g_strdown' is deprecated [-Wdeprecated-declarations] g_strdown(tg_seq_string); ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from ../../src/comparison/match.h:23, from alignment.c:20: /usr/include/glib-2.0/glib/gstrfuncs.h:207:23: note: declared here gchar* g_strdown (gchar *string); ^ alignment.c: In function 'AlignmentView_add_SPLIT_CODON': alignment.c:982:5: warning: 'g_strup' is deprecated [-Wdeprecated-declarations] g_strup(qy_codon); ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from ../../src/comparison/match.h:23, from alignment.c:20: /usr/include/glib-2.0/glib/gstrfuncs.h:209:23: note: declared here gchar* g_strup (gchar *string); ^ alignment.c:983:5: warning: 'g_strup' is deprecated [-Wdeprecated-declarations] g_strup(tg_codon); ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from ../../src/comparison/match.h:23, from alignment.c:20: /usr/include/glib-2.0/glib/gstrfuncs.h:209:23: note: declared here gchar* g_strup (gchar *string); ^ gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o alignment.test alignment.test.o alignment.o c4.o region.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o codegen.test.o codegen.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o codegen.o codegen.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o codegen.test codegen.test.o codegen.o ../../src/general/argument.o -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o optimal.test.o optimal.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o optimal.o optimal.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o layout.o layout.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o viterbi.o viterbi.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o subopt.o subopt.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o cgutil.o cgutil.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o optimal.test optimal.test.o optimal.o c4.o alignment.o codegen.o region.o layout.o viterbi.o subopt.o cgutil.o ../../src/struct/slist.o ../../src/struct/recyclebin.o ../../src/struct/rangetree.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o layout.test.o layout.test.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o layout.test layout.test.o layout.o ../../src/struct/matrix.o -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o viterbi.test.o viterbi.test.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o viterbi.test viterbi.test.o viterbi.o c4.o region.o alignment.o codegen.o layout.o subopt.o cgutil.o ../../src/struct/slist.o ../../src/struct/recyclebin.o ../../src/struct/rangetree.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o opair.test.o opair.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o opair.o opair.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o opair.test opair.test.o opair.o optimal.o c4.o alignment.o codegen.o region.o layout.o viterbi.o subopt.o cgutil.o ../../src/struct/slist.o ../../src/struct/recyclebin.o ../../src/struct/rangetree.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o subopt.test.o subopt.test.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o subopt.test subopt.test.o subopt.o region.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o cgutil.test.o cgutil.test.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o cgutil.test cgutil.test.o cgutil.o codegen.o c4.o region.o ../../src/general/argument.o ../../src/struct/matrix.o -lglib-2.0 -lpthread make[3]: Leaving directory '/«PKGBUILDDIR»/src/c4' Making all in bsdp make[3]: Entering directory '/«PKGBUILDDIR»/src/bsdp' gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -I../../src/c4 -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o heuristic.test.o heuristic.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -I../../src/c4 -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o heuristic.o heuristic.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o heuristic.test heuristic.test.o heuristic.o ../../src/struct/slist.o ../../src/struct/recyclebin.o ../../src/struct/rangetree.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/c4/c4.o ../../src/c4/alignment.o ../../src/c4/optimal.o ../../src/c4/codegen.o ../../src/c4/region.o ../../src/c4/layout.o ../../src/c4/viterbi.o ../../src/c4/subopt.o ../../src/c4/cgutil.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -I../../src/c4 -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o bsdp.test.o bsdp.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -I../../src/c4 -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o bsdp.o bsdp.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o bsdp.test bsdp.test.o bsdp.o ../../src/general/argument.o ../../src/struct/pqueue.o ../../src/struct/recyclebin.o -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -I../../src/c4 -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o hpair.test.o hpair.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -I../../src/c4 -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o hpair.o hpair.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -I../../src/c4 -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o sar.o sar.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o hpair.test hpair.test.o hpair.o heuristic.o bsdp.o sar.o ../../src/struct/slist.o ../../src/struct/pqueue.o ../../src/struct/recyclebin.o ../../src/comparison/hspset.o ../../src/comparison/wordhood.o ../../src/struct/rangetree.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/c4/c4.o ../../src/c4/alignment.o ../../src/c4/optimal.o ../../src/c4/codegen.o ../../src/c4/region.o ../../src/c4/layout.o ../../src/c4/viterbi.o ../../src/c4/subopt.o ../../src/c4/cgutil.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -I../../src/c4 -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o sar.test.o sar.test.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o sar.test sar.test.o sar.o heuristic.o ../../src/struct/slist.o ../../src/struct/recyclebin.o ../../src/struct/rangetree.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/c4/c4.o ../../src/c4/alignment.o ../../src/c4/optimal.o ../../src/c4/codegen.o ../../src/c4/region.o ../../src/c4/layout.o ../../src/c4/viterbi.o ../../src/c4/subopt.o ../../src/c4/cgutil.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread make[3]: Leaving directory '/«PKGBUILDDIR»/src/bsdp' Making all in sdp make[3]: Entering directory '/«PKGBUILDDIR»/src/sdp' gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -I../../src/c4 -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o sdp.test.o sdp.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -I../../src/c4 -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o sdp.o sdp.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -I../../src/c4 -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o boundary.o boundary.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -I../../src/c4 -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o scheduler.o scheduler.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -I../../src/c4 -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o lookahead.o lookahead.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -I../../src/c4 -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o straceback.o straceback.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o sdp.test sdp.test.o sdp.o boundary.o scheduler.o lookahead.o straceback.o ../../src/struct/pqueue.o ../../src/struct/recyclebin.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/comparison/hspset.o ../../src/comparison/comparison.o ../../src/comparison/wordhood.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/c4/c4.o ../../src/c4/alignment.o ../../src/c4/optimal.o ../../src/c4/codegen.o ../../src/c4/region.o ../../src/c4/layout.o ../../src/c4/viterbi.o ../../src/c4/subopt.o ../../src/c4/cgutil.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -I../../src/c4 -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o lookahead.test.o lookahead.test.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o lookahead.test lookahead.test.o lookahead.o -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -I../../src/c4 -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o boundary.test.o boundary.test.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o boundary.test boundary.test.o boundary.o ../../src/general/argument.o ../../src/c4/region.o -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -I../../src/c4 -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o scheduler.test.o scheduler.test.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o scheduler.test scheduler.test.o scheduler.o lookahead.o boundary.o straceback.o ../../src/struct/recyclebin.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/c4/c4.o ../../src/c4/alignment.o ../../src/c4/optimal.o ../../src/c4/codegen.o ../../src/c4/region.o ../../src/c4/layout.o ../../src/c4/viterbi.o ../../src/c4/subopt.o ../../src/c4/cgutil.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -I../../src/c4 -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o straceback.test.o straceback.test.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o straceback.test straceback.test.o straceback.o ../../src/struct/recyclebin.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/c4/c4.o ../../src/c4/alignment.o ../../src/c4/optimal.o ../../src/c4/codegen.o ../../src/c4/region.o ../../src/c4/layout.o ../../src/c4/viterbi.o ../../src/c4/subopt.o ../../src/c4/cgutil.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread make[3]: Leaving directory '/«PKGBUILDDIR»/src/sdp' Making all in model make[3]: Entering directory '/«PKGBUILDDIR»/src/model' gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o edit_distance.test.o edit_distance.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o edit_distance.o edit_distance.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o edit_distance.test edit_distance.test.o edit_distance.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o ../../src/c4/optimal.o ../../src/c4/viterbi.o ../../src/c4/layout.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/alignment.o ../../src/c4/region.o ../../src/c4/c4.o ../../src/c4/subopt.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o affine.test.o affine.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o affine.o affine.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o ungapped.o ungapped.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o affine.test affine.test.o affine.o ungapped.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o ../../src/c4/optimal.o ../../src/c4/viterbi.o ../../src/c4/layout.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/alignment.o ../../src/c4/region.o ../../src/c4/c4.o ../../src/c4/subopt.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o protein2dna.test.o protein2dna.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o protein2dna.o protein2dna.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o frameshift.o frameshift.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o protein2dna.test protein2dna.test.o protein2dna.o affine.o ungapped.o frameshift.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o ../../src/c4/optimal.o ../../src/c4/viterbi.o ../../src/c4/layout.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/alignment.o ../../src/c4/region.o ../../src/c4/c4.o ../../src/c4/subopt.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o ner.test.o ner.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o ner.o ner.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o ner.test ner.test.o ner.o affine.o ungapped.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o ../../src/c4/optimal.o ../../src/c4/viterbi.o ../../src/c4/layout.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/alignment.o ../../src/c4/region.o ../../src/c4/c4.o ../../src/c4/subopt.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o est2genome.test.o est2genome.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o est2genome.o est2genome.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o intron.o intron.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o est2genome.test est2genome.test.o est2genome.o affine.o ungapped.o intron.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o ../../src/c4/optimal.o ../../src/c4/viterbi.o ../../src/c4/layout.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/alignment.o ../../src/c4/region.o ../../src/c4/c4.o ../../src/c4/subopt.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o ungapped.test.o ungapped.test.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o ungapped.test ungapped.test.o ungapped.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o ../../src/c4/optimal.o ../../src/c4/viterbi.o ../../src/c4/layout.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/alignment.o ../../src/c4/region.o ../../src/c4/c4.o ../../src/c4/subopt.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o intron.test.o intron.test.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o intron.test intron.test.o intron.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o ../../src/c4/optimal.o ../../src/c4/viterbi.o ../../src/c4/layout.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/alignment.o ../../src/c4/region.o ../../src/c4/c4.o ../../src/c4/subopt.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o protein2genome.test.o protein2genome.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o protein2genome.o protein2genome.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o phase.o phase.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o protein2genome.test protein2genome.test.o protein2genome.o protein2dna.o ungapped.o intron.o affine.o frameshift.o phase.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o ../../src/c4/optimal.o ../../src/c4/viterbi.o ../../src/c4/layout.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/alignment.o ../../src/c4/region.o ../../src/c4/c4.o ../../src/c4/subopt.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o coding2coding.test.o coding2coding.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o coding2coding.o coding2coding.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o coding2coding.test coding2coding.test.o coding2coding.o affine.o ungapped.o frameshift.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o ../../src/c4/optimal.o ../../src/c4/viterbi.o ../../src/c4/layout.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/alignment.o ../../src/c4/region.o ../../src/c4/c4.o ../../src/c4/subopt.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o frameshift.test.o frameshift.test.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o frameshift.test frameshift.test.o frameshift.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o ../../src/c4/optimal.o ../../src/c4/viterbi.o ../../src/c4/layout.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/alignment.o ../../src/c4/region.o ../../src/c4/c4.o ../../src/c4/subopt.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o coding2genome.test.o coding2genome.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o coding2genome.o coding2genome.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o coding2genome.test coding2genome.test.o coding2genome.o coding2coding.o affine.o ungapped.o frameshift.o intron.o phase.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o ../../src/c4/optimal.o ../../src/c4/viterbi.o ../../src/c4/layout.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/alignment.o ../../src/c4/region.o ../../src/c4/c4.o ../../src/c4/subopt.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o cdna2genome.test.o cdna2genome.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o cdna2genome.o cdna2genome.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o cdna2genome.test cdna2genome.test.o cdna2genome.o affine.o ungapped.o frameshift.o intron.o phase.o coding2coding.o coding2genome.o est2genome.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o ../../src/c4/optimal.o ../../src/c4/viterbi.o ../../src/c4/layout.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/alignment.o ../../src/c4/region.o ../../src/c4/c4.o ../../src/c4/subopt.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o genome2genome.test.o genome2genome.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o genome2genome.o genome2genome.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o genome2genome.test genome2genome.test.o genome2genome.o coding2coding.o affine.o ungapped.o frameshift.o intron.o phase.o coding2genome.o cdna2genome.o est2genome.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o ../../src/c4/optimal.o ../../src/c4/viterbi.o ../../src/c4/layout.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/alignment.o ../../src/c4/region.o ../../src/c4/c4.o ../../src/c4/subopt.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o phase.test.o phase.test.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o phase.test phase.test.o phase.o intron.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o ../../src/c4/optimal.o ../../src/c4/viterbi.o ../../src/c4/layout.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/alignment.o ../../src/c4/region.o ../../src/c4/c4.o ../../src/c4/subopt.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o modeltype.test.o modeltype.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o modeltype.o modeltype.c modeltype.c: In function 'Model_Type_from_string': modeltype.c:121:9: warning: 'g_strcasecmp' is deprecated [-Wdeprecated-declarations] if(!g_strcasecmp(name[i], str)) ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from ../../src/c4/c4.h:23, from modeltype.h:23, from modeltype.c:16: /usr/include/glib-2.0/glib/gstrfuncs.h:200:23: note: declared here gint g_strcasecmp (const gchar *s1, ^ modeltype.c:124:9: warning: 'g_strcasecmp' is deprecated [-Wdeprecated-declarations] if(!g_strcasecmp(short_name[i], str)) ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from ../../src/c4/c4.h:23, from modeltype.h:23, from modeltype.c:16: /usr/include/glib-2.0/glib/gstrfuncs.h:200:23: note: declared here gint g_strcasecmp (const gchar *s1, ^ gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o modeltype.test modeltype.test.o modeltype.o ungapped.o affine.o est2genome.o ner.o protein2dna.o protein2genome.o coding2coding.o coding2genome.o genome2genome.o cdna2genome.o frameshift.o phase.o intron.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o ../../src/c4/optimal.o ../../src/c4/viterbi.o ../../src/c4/layout.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/alignment.o ../../src/c4/region.o ../../src/c4/c4.o ../../src/c4/subopt.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o bootstrapper.o bootstrapper.c bootstrapper.c: In function 'Argument_main': bootstrapper.c:421:5: warning: 'g_strcasecmp' is deprecated [-Wdeprecated-declarations] if((!models) || (!g_strcasecmp(models, "all"))) ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from ../../src/c4/c4.h:23, from ungapped.h:23, from bootstrapper.c:20: /usr/include/glib-2.0/glib/gstrfuncs.h:200:23: note: declared here gint g_strcasecmp (const gchar *s1, ^ gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o bootstrapper bootstrapper.o modeltype.o ungapped.o affine.o est2genome.o ner.o protein2dna.o protein2genome.o coding2coding.o coding2genome.o genome2genome.o cdna2genome.o frameshift.o intron.o phase.o ../../src/struct/pqueue.o ../../src/comparison/comparison.o ../../src/comparison/hspset.o ../../src/comparison/wordhood.o ../../src/bsdp/heuristic.o ../../src/sdp/sdp.o ../../src/sdp/scheduler.o ../../src/sdp/straceback.o ../../src/sdp/lookahead.o ../../src/sdp/boundary.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o ../../src/c4/optimal.o ../../src/c4/viterbi.o ../../src/c4/layout.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/alignment.o ../../src/c4/region.o ../../src/c4/c4.o ../../src/c4/subopt.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread make[3]: Leaving directory '/«PKGBUILDDIR»/src/model' Making all in hub make[3]: Entering directory '/«PKGBUILDDIR»/src/hub' gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/comparison -I../../src/struct -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/model -I../../src/general -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o gam.test.o gam.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/comparison -I../../src/struct -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/model -I../../src/general -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o gam.o gam.c gam.c: In function 'GAM_Refinement_from_string': gam.c:68:9: warning: 'g_strcasecmp' is deprecated [-Wdeprecated-declarations] if(!g_strcasecmp(name[i], str)) ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from gam.h:23, from gam.c:21: /usr/include/glib-2.0/glib/gstrfuncs.h:200:23: note: declared here gint g_strcasecmp (const gchar *s1, ^ gam.c: In function 'GAM_bestn_tree_destroy': gam.c:536:5: warning: 'g_tree_traverse' is deprecated [-Wdeprecated-declarations] g_tree_traverse(bestn_tree, GAM_tree_collect_values, ^ In file included from /usr/include/glib-2.0/glib.h:88:0, from gam.h:23, from gam.c:21: /usr/include/glib-2.0/glib/gtree.h:88:10: note: declared here void g_tree_traverse (GTree *tree, ^ gam.c: In function 'GAM_percent_threshold_tree_destroy': gam.c:549:5: warning: 'g_tree_traverse' is deprecated [-Wdeprecated-declarations] g_tree_traverse(percent_threshold_tree, GAM_tree_collect_values, ^ In file included from /usr/include/glib-2.0/glib.h:88:0, from gam.h:23, from gam.c:21: /usr/include/glib-2.0/glib/gtree.h:88:10: note: declared here void g_tree_traverse (GTree *tree, ^ gam.c: In function 'GAM_report': gam.c:596:9: warning: 'g_tree_traverse' is deprecated [-Wdeprecated-declarations] g_tree_traverse(gam->bestn_tree, GAM_bestn_tree_report_traverse, ^ In file included from /usr/include/glib-2.0/glib.h:88:0, from gam.h:23, from gam.c:21: /usr/include/glib-2.0/glib/gtree.h:88:10: note: declared here void g_tree_traverse (GTree *tree, ^ gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o gam.test gam.test.o gam.o ../../src/comparison/hspset.o ../../src/comparison/comparison.o ../../src/comparison/wordhood.o ../../src/struct/sparsecache.o ../../src/general/compoundfile.o ../../src/c4/c4.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/opair.o ../../src/c4/alignment.o ../../src/c4/optimal.o ../../src/c4/viterbi.o ../../src/c4/layout.o ../../src/c4/region.o ../../src/c4/subopt.o ../../src/bsdp/bsdp.o ../../src/bsdp/sar.o ../../src/bsdp/heuristic.o ../../src/bsdp/hpair.o ../../src/sdp/boundary.o ../../src/sdp/sdp.o ../../src/sdp/scheduler.o ../../src/sdp/straceback.o ../../src/sdp/lookahead.o ../../src/struct/matrix.o ../../src/struct/slist.o ../../src/struct/pqueue.o ../../src/struct/recyclebin.o ../../src/struct/rangetree.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/translate.o ../../src/sequence/splice.o ../../src/model/affine.o ../../src/model/est2genome.o ../../src/model/ner.o ../../src/model/protein2dna.o ../../src/model/protein2genome.o ../../src/model/coding2coding.o ../../src/model/coding2genome.o ../../src/model/cdna2genome.o ../../src/model/genome2genome.o ../../src/model/ungapped.o ../../src/model/intron.o ../../src/model/frameshift.o ../../src/model/phase.o ../../src/model/modeltype.o ../../src/general/argument.o ../../src/general/lineparse.o ../../src/comparison/match.o ../../src/sequence/submat.o ../../src/sequence/codonsubmat.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/comparison -I../../src/struct -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/model -I../../src/general -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o analysis.test.o analysis.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/comparison -I../../src/struct -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/model -I../../src/general -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o analysis.o analysis.c analysis.c: In function 'Analysis_decide_scan_query': analysis.c:238:5: warning: 'g_strcasecmp' is deprecated [-Wdeprecated-declarations] if(!g_strcasecmp(force_scan, "none")){ ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from analysis.h:23, from analysis.c:16: /usr/include/glib-2.0/glib/gstrfuncs.h:200:23: note: declared here gint g_strcasecmp (const gchar *s1, ^ analysis.c:245:5: warning: 'g_strcasecmp' is deprecated [-Wdeprecated-declarations] } else if((!g_strcasecmp(force_scan, "query")) ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from analysis.h:23, from analysis.c:16: /usr/include/glib-2.0/glib/gstrfuncs.h:200:23: note: declared here gint g_strcasecmp (const gchar *s1, ^ analysis.c:246:12: warning: 'g_strcasecmp' is deprecated [-Wdeprecated-declarations] || (!g_strcasecmp(force_scan, "q"))){ ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from analysis.h:23, from analysis.c:16: /usr/include/glib-2.0/glib/gstrfuncs.h:200:23: note: declared here gint g_strcasecmp (const gchar *s1, ^ analysis.c:248:5: warning: 'g_strcasecmp' is deprecated [-Wdeprecated-declarations] } else if((!g_strcasecmp(force_scan, "target")) ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from analysis.h:23, from analysis.c:16: /usr/include/glib-2.0/glib/gstrfuncs.h:200:23: note: declared here gint g_strcasecmp (const gchar *s1, ^ analysis.c:249:12: warning: 'g_strcasecmp' is deprecated [-Wdeprecated-declarations] || (!g_strcasecmp(force_scan, "t"))){ ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from analysis.h:23, from analysis.c:16: /usr/include/glib-2.0/glib/gstrfuncs.h:200:23: note: declared here gint g_strcasecmp (const gchar *s1, ^ gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/comparison -I../../src/struct -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/model -I../../src/general -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o bsam.o bsam.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o analysis.test analysis.test.o analysis.o gam.o bsam.o ../../src/comparison/hspset.o ../../src/comparison/wordhood.o ../../src/comparison/seeder.o ../../src/comparison/comparison.o ../../src/database/fastapipe.o ../../src/database/fastadb.o ../../src/struct/dejavu.o ../../src/struct/fsm.o ../../src/struct/vfsm.o ../../src/struct/sparsecache.o ../../src/general/compoundfile.o ../../src/general/socket.o ../../src/c4/c4.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/opair.o ../../src/c4/alignment.o ../../src/c4/optimal.o ../../src/c4/viterbi.o ../../src/c4/layout.o ../../src/c4/region.o ../../src/c4/subopt.o ../../src/bsdp/bsdp.o ../../src/bsdp/sar.o ../../src/bsdp/heuristic.o ../../src/bsdp/hpair.o ../../src/sdp/boundary.o ../../src/sdp/sdp.o ../../src/sdp/scheduler.o ../../src/sdp/straceback.o ../../src/sdp/lookahead.o ../../src/struct/matrix.o ../../src/struct/slist.o ../../src/struct/pqueue.o ../../src/struct/recyclebin.o ../../src/struct/rangetree.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/translate.o ../../src/sequence/splice.o ../../src/model/affine.o ../../src/model/est2genome.o ../../src/model/ner.o ../../src/model/protein2dna.o ../../src/model/protein2genome.o ../../src/model/coding2coding.o ../../src/model/coding2genome.o ../../src/model/cdna2genome.o ../../src/model/genome2genome.o ../../src/model/ungapped.o ../../src/model/intron.o ../../src/model/frameshift.o ../../src/model/phase.o ../../src/model/modeltype.o ../../src/general/argument.o ../../src/general/lineparse.o ../../src/comparison/match.o ../../src/sequence/submat.o ../../src/sequence/codonsubmat.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/comparison -I../../src/struct -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/model -I../../src/general -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o bsam.test.o bsam.test.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o bsam.test bsam.test.o bsam.o ../../src/general/argument.o ../../src/general/lineparse.o ../../src/comparison/hspset.o ../../src/comparison/comparison.o ../../src/comparison/match.o ../../src/comparison/wordhood.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/translate.o ../../src/sequence/submat.o ../../src/sequence/codonsubmat.o ../../src/sequence/splice.o ../../src/struct/dejavu.o ../../src/struct/pqueue.o ../../src/struct/sparsecache.o ../../src/struct/recyclebin.o ../../src/struct/matrix.o -lm -lglib-2.0 -lpthread make[3]: Leaving directory '/«PKGBUILDDIR»/src/hub' Making all in program make[3]: Entering directory '/«PKGBUILDDIR»/src/program' ../../src/model/bootstrapper --compiled no ** Message: Starting building bootstrapping components ** Message: Processing model [u] ** Message: Bootstrapper processing model [ungapped:dna2dna] ** Message: Process optimal [optimal:ungapped:dna2dna] ** (process:21685): WARNING **: Creating codegen directory [/«PKGBUILDDIR»/codegen] ** (process:21685): WARNING **: Creating codegen directory [/«PKGBUILDDIR»/codegen] ** (process:21685): WARNING **: Creating codegen directory [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu] ** (process:21685): WARNING **: Creating codegen directory [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_path.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_region.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_region.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_checkpoint.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_checkpoint.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_path_32_continuation.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_path_32_continuation.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_score.o] to archive ar -cSq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_score.o ** Message: Adding function [optimal_58_ungapped_58_dna2dna_32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_path.o ** Message: Adding function [optimal_58_ungapped_58_dna2dna_32_find_32_path] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_region.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_region.o ** Message: Adding function [optimal_58_ungapped_58_dna2dna_32_find_32_region] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_checkpoint.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_checkpoint.o ** Message: Adding function [optimal_58_ungapped_58_dna2dna_32_find_32_checkpoint] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_path_32_continuation.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_path_32_continuation.o ** Message: Adding function [optimal_58_ungapped_58_dna2dna_32_find_32_path_32_continuation] ** Message: Bootstrapper processing model [ungapped:protein2protein] ** Message: Process optimal [optimal:ungapped:protein2protein] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_path.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_region.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_region.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_checkpoint.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_checkpoint.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_path_32_continuation.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_path_32_continuation.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_score.o ** Message: Adding function [optimal_58_ungapped_58_protein2protein_32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_path.o ** Message: Adding function [optimal_58_ungapped_58_protein2protein_32_find_32_path] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_region.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_region.o ** Message: Adding function [optimal_58_ungapped_58_protein2protein_32_find_32_region] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_checkpoint.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_checkpoint.o ** Message: Adding function [optimal_58_ungapped_58_protein2protein_32_find_32_checkpoint] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_path_32_continuation.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_path_32_continuation.o ** Message: Adding function [optimal_58_ungapped_58_protein2protein_32_find_32_path_32_continuation] ** Message: Bootstrapper processing model [ungapped:dna2protein] ** Message: Process optimal [optimal:ungapped:dna2protein] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_path.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_region.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_region.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_checkpoint.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_checkpoint.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_path_32_continuation.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_path_32_continuation.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_score.o ** Message: Adding function [optimal_58_ungapped_58_dna2protein_32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_path.o ** Message: Adding function [optimal_58_ungapped_58_dna2protein_32_find_32_path] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_region.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_region.o ** Message: Adding function [optimal_58_ungapped_58_dna2protein_32_find_32_region] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_checkpoint.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_checkpoint.o ** Message: Adding function [optimal_58_ungapped_58_dna2protein_32_find_32_checkpoint] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_path_32_continuation.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_path_32_continuation.o ** Message: Adding function [optimal_58_ungapped_58_dna2protein_32_find_32_path_32_continuation] ** Message: Bootstrapper processing model [ungapped:protein2dna] ** Message: Process optimal [optimal:ungapped:protein2dna] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_path.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_region.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_region.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_checkpoint.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_checkpoint.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_path_32_continuation.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_path_32_continuation.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_score.o ** Message: Adding function [optimal_58_ungapped_58_protein2dna_32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_path.o ** Message: Adding function [optimal_58_ungapped_58_protein2dna_32_find_32_path] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_region.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_region.o ** Message: Adding function [optimal_58_ungapped_58_protein2dna_32_find_32_region] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_checkpoint.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_checkpoint.o ** Message: Adding function [optimal_58_ungapped_58_protein2dna_32_find_32_checkpoint] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_path_32_continuation.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_path_32_continuation.o ** Message: Adding function [optimal_58_ungapped_58_protein2dna_32_find_32_path_32_continuation] ** Message: Processing model [u:t] ** Message: Bootstrapper processing model [ungapped:codon] ** Message: Process optimal [optimal:ungapped:codon] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_path.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_region.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_region.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_checkpoint.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_checkpoint.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_path_32_continuation.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_path_32_continuation.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_score.o ** Message: Adding function [optimal_58_ungapped_58_codon_32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_path.o ** Message: Adding function [optimal_58_ungapped_58_codon_32_find_32_path] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_region.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_region.o ** Message: Adding function [optimal_58_ungapped_58_codon_32_find_32_region] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_checkpoint.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_checkpoint.o ** Message: Adding function [optimal_58_ungapped_58_codon_32_find_32_checkpoint] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_path_32_continuation.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_path_32_continuation.o ** Message: Adding function [optimal_58_ungapped_58_codon_32_find_32_path_32_continuation] ** Message: Processing model [a:g] ** Message: Bootstrapper processing model [affine:global:dna2dna] ** Message: Process optimal [optimal:affine:global:dna2dna] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_dna2dna_32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_dna2dna_32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_dna2dna_32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_dna2dna_32_find_32_path.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_dna2dna_32_find_32_checkpoint.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_dna2dna_32_find_32_checkpoint.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_dna2dna_32_find_32_path_32_continuation.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_dna2dna_32_find_32_path_32_continuation.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_dna2dna_32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_dna2dna_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_dna2dna_32_find_32_score.o ** Message: Adding function [optimal_58_affine_58_global_58_dna2dna_32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_dna2dna_32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_dna2dna_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_dna2dna_32_find_32_path.o ** Message: Adding function [optimal_58_affine_58_global_58_dna2dna_32_find_32_path] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_dna2dna_32_find_32_checkpoint.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_dna2dna_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_dna2dna_32_find_32_checkpoint.o ** Message: Adding function [optimal_58_affine_58_global_58_dna2dna_32_find_32_checkpoint] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_dna2dna_32_find_32_path_32_continuation.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_dna2dna_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_dna2dna_32_find_32_path_32_continuation.o ** Message: Adding function [optimal_58_affine_58_global_58_dna2dna_32_find_32_path_32_continuation] ** Message: Bootstrapper processing model [affine:global:protein2protein] ** Message: Process optimal [optimal:affine:global:protein2protein] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_protein2protein_32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_protein2protein_32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_protein2protein_32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_protein2protein_32_find_32_path.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_protein2protein_32_find_32_checkpoint.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_protein2protein_32_find_32_checkpoint.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_protein2protein_32_find_32_path_32_continuation.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_protein2protein_32_find_32_path_32_continuation.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_protein2protein_32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_protein2protein_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_protein2protein_32_find_32_score.o ** Message: Adding function [optimal_58_affine_58_global_58_protein2protein_32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_protein2protein_32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_protein2protein_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_protein2protein_32_find_32_path.o ** Message: Adding function [optimal_58_affine_58_global_58_protein2protein_32_find_32_path] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_protein2protein_32_find_32_checkpoint.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_protein2protein_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_protein2protein_32_find_32_checkpoint.o ** Message: Adding function [optimal_58_affine_58_global_58_protein2protein_32_find_32_checkpoint] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_protein2protein_32_find_32_path_32_continuation.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_protein2protein_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_protein2protein_32_find_32_path_32_continuation.o ** Message: Adding function [optimal_58_affine_58_global_58_protein2protein_32_find_32_path_32_continuation] ** Message: Processing model [a:b] ** Message: Bootstrapper processing model [affine:bestfit:dna2dna] ** Message: Process optimal [optimal:affine:bestfit:dna2dna] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_path.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_region.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_region.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_checkpoint.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_checkpoint.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_path_32_continuation.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_path_32_continuation.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_score.o ** Message: Adding function [optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_path.o ** Message: Adding function [optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_path] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_region.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_region.o ** Message: Adding function [optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_region] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_checkpoint.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_checkpoint.o ** Message: Adding function [optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_checkpoint] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_path_32_continuation.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_path_32_continuation.o ** Message: Adding function [optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_path_32_continuation] ** Message: Bootstrapper processing model [affine:bestfit:protein2protein] ** Message: Process optimal [optimal:affine:bestfit:protein2protein] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_path.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_region.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_region.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_checkpoint.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_checkpoint.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_path_32_continuation.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_path_32_continuation.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_score.o ** Message: Adding function [optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_path.o ** Message: Adding function [optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_path] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_region.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_region.o ** Message: Adding function [optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_region] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_checkpoint.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_checkpoint.o ** Message: Adding function [optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_checkpoint] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_path_32_continuation.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_path_32_continuation.o ** Message: Adding function [optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_path_32_continuation] ** Message: Processing model [a:l] ** Message: Bootstrapper processing model [affine:local:dna2dna] ** Message: Process optimal [optimal:affine:local:dna2dna] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_path.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_region.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_region.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_checkpoint.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_checkpoint.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_path_32_continuation.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_path_32_continuation.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_score.o ** Message: Adding function [optimal_58_affine_58_local_58_dna2dna_32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_path.o ** Message: Adding function [optimal_58_affine_58_local_58_dna2dna_32_find_32_path] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_region.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_region.o ** Message: Adding function [optimal_58_affine_58_local_58_dna2dna_32_find_32_region] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_checkpoint.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_checkpoint.o ** Message: Adding function [optimal_58_affine_58_local_58_dna2dna_32_find_32_checkpoint] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_path_32_continuation.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_path_32_continuation.o ** Message: Adding function [optimal_58_affine_58_local_58_dna2dna_32_find_32_path_32_continuation] ** Message: Process optimal [Terminal [Segment("START"->"match"):[affine:local:dna2dna]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score.o ** Message: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path.o ** Message: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path] ** Message: Process optimal [Terminal [Segment("match"->"END"):[affine:local:dna2dna]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score.o ** Message: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path.o ** Message: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path] ** Message: Process optimal [HeuristicJoin:[Segment("match"->"match"):[affine:local:dna2dna]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score.o ** Message: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path.o ** Message: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_affine_58_local_58_dna2dna_58_reverse_58_traceback_58_seeded.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_affine_58_local_58_dna2dna_58_reverse_58_traceback_58_seeded.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_affine_58_local_58_dna2dna_58_forward_58_traceback_58_seeded.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_affine_58_local_58_dna2dna_58_forward_58_traceback_58_seeded.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_affine_58_local_58_dna2dna_58_reverse_58_traceback_58_seeded.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_affine_58_local_58_dna2dna_58_reverse_58_traceback_58_seeded.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_affine_58_local_58_dna2dna_58_reverse_58_traceback_58_seeded.o ** Message: Adding function [Scheduler_Cell_process_affine_58_local_58_dna2dna_58_reverse_58_traceback_58_seeded] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_affine_58_local_58_dna2dna_58_forward_58_traceback_58_seeded.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_affine_58_local_58_dna2dna_58_forward_58_traceback_58_seeded.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_affine_58_local_58_dna2dna_58_forward_58_traceback_58_seeded.o ** Message: Adding function [Scheduler_Cell_process_affine_58_local_58_dna2dna_58_forward_58_traceback_58_seeded] ** Message: Bootstrapper processing model [affine:local:protein2protein] ** Message: Process optimal [optimal:affine:local:protein2protein] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_path.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_region.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_region.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_checkpoint.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_checkpoint.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_path_32_continuation.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_path_32_continuation.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_score.o ** Message: Adding function [optimal_58_affine_58_local_58_protein2protein_32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_path.o ** Message: Adding function [optimal_58_affine_58_local_58_protein2protein_32_find_32_path] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_region.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_region.o ** Message: Adding function [optimal_58_affine_58_local_58_protein2protein_32_find_32_region] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_checkpoint.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_checkpoint.o ** Message: Adding function [optimal_58_affine_58_local_58_protein2protein_32_find_32_checkpoint] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_path_32_continuation.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_path_32_continuation.o ** Message: Adding function [optimal_58_affine_58_local_58_protein2protein_32_find_32_path_32_continuation] ** Message: Process optimal [Terminal [Segment("START"->"match"):[affine:local:protein2protein]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score.o ** Message: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path.o ** Message: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path] ** Message: Process optimal [Terminal [Segment("match"->"END"):[affine:local:protein2protein]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score.o ** Message: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path.o ** Message: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path] ** Message: Process optimal [HeuristicJoin:[Segment("match"->"match"):[affine:local:protein2protein]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score.o ** Message: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path.o ** Message: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_affine_58_local_58_protein2protein_58_reverse_58_traceback_58_seeded.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_affine_58_local_58_protein2protein_58_reverse_58_traceback_58_seeded.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_affine_58_local_58_protein2protein_58_forward_58_traceback_58_seeded.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_affine_58_local_58_protein2protein_58_forward_58_traceback_58_seeded.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_affine_58_local_58_protein2protein_58_reverse_58_traceback_58_seeded.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_affine_58_local_58_protein2protein_58_reverse_58_traceback_58_seeded.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_affine_58_local_58_protein2protein_58_reverse_58_traceback_58_seeded.o ** Message: Adding function [Scheduler_Cell_process_affine_58_local_58_protein2protein_58_reverse_58_traceback_58_seeded] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_affine_58_local_58_protein2protein_58_forward_58_traceback_58_seeded.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_affine_58_local_58_protein2protein_58_forward_58_traceback_58_seeded.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_affine_58_local_58_protein2protein_58_forward_58_traceback_58_seeded.o ** Message: Adding function [Scheduler_Cell_process_affine_58_local_58_protein2protein_58_forward_58_traceback_58_seeded] ** Message: Processing model [a:o] ** Message: Bootstrapper processing model [affine:overlap:dna2dna] ** Message: Process optimal [optimal:affine:overlap:dna2dna] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_path.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_region.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_region.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_checkpoint.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_checkpoint.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_path_32_continuation.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_path_32_continuation.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_score.o ** Message: Adding function [optimal_58_affine_58_overlap_58_dna2dna_32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_path.o ** Message: Adding function [optimal_58_affine_58_overlap_58_dna2dna_32_find_32_path] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_region.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_region.o ** Message: Adding function [optimal_58_affine_58_overlap_58_dna2dna_32_find_32_region] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_checkpoint.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_checkpoint.o ** Message: Adding function [optimal_58_affine_58_overlap_58_dna2dna_32_find_32_checkpoint] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_path_32_continuation.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_path_32_continuation.o ** Message: Adding function [optimal_58_affine_58_overlap_58_dna2dna_32_find_32_path_32_continuation] ** Message: Processing model [e2g] ** Message: Bootstrapper processing model [est2genome] ** Message: Process optimal [optimal:est2genome] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_path.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_region.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_region.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_checkpoint.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_checkpoint.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_path_32_continuation.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_path_32_continuation.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_score.o ** Message: Adding function [optimal_58_est2genome_32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_path.o ** Message: Adding function [optimal_58_est2genome_32_find_32_path] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_region.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_region.o ** Message: Adding function [optimal_58_est2genome_32_find_32_region] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_checkpoint.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_checkpoint.o ** Message: Adding function [optimal_58_est2genome_32_find_32_checkpoint] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_path_32_continuation.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_path_32_continuation.o ** Message: Adding function [optimal_58_est2genome_32_find_32_path_32_continuation] ** Message: Process optimal [Terminal [Segment("START"->"match reverse"):[est2genome]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o ** Message: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o ** Message: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path] ** Message: Process optimal [Terminal [Segment("match reverse"->"END"):[est2genome]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_reverse_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_reverse_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_reverse_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_reverse_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_reverse_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_reverse_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_reverse_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_score.o ** Message: Adding function [Terminal_32__91_Segment_40__34_match_32_reverse_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_reverse_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_reverse_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_reverse_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_path.o ** Message: Adding function [Terminal_32__91_Segment_40__34_match_32_reverse_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_path] ** Message: Process optimal [Terminal [Segment("START"->"match forward"):[est2genome]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o ** Message: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o ** Message: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path] ** Message: Process optimal [Terminal [Segment("match forward"->"END"):[est2genome]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_forward_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_forward_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_forward_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_forward_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_forward_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_forward_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_forward_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_score.o ** Message: Adding function [Terminal_32__91_Segment_40__34_match_32_forward_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_forward_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_forward_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_forward_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_path.o ** Message: Adding function [Terminal_32__91_Segment_40__34_match_32_forward_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_path] ** Message: Process optimal [HeuristicJoin:[Segment("match reverse"->"match reverse"):[est2genome]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o ** Message: Adding function [HeuristicJoin_58__91_Segment_40__34_match_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o ** Message: Adding function [HeuristicJoin_58__91_Segment_40__34_match_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path] ** Message: Process optimal [Src span [Segment("match reverse"->"intron reverse"):[est2genome]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o ** Message: Adding function [Src_32_span_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o ** Message: Adding function [Src_32_span_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path] ** Message: Process optimal [Src span traceback [Segment("match reverse"->"intron reverse"):[est2genome]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o ** Message: Adding function [Src_32_span_32_traceback_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path] ** Message: Process optimal [Dst span [Segment("intron reverse"->"match reverse"):[est2genome]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o ** Message: Adding function [Dst_32_span_32__91_Segment_40__34_intron_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o ** Message: Adding function [Dst_32_span_32__91_Segment_40__34_intron_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path] ** Message: Process optimal [HeuristicJoin:[Segment("match forward"->"match forward"):[est2genome]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o ** Message: Adding function [HeuristicJoin_58__91_Segment_40__34_match_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o ** Message: Adding function [HeuristicJoin_58__91_Segment_40__34_match_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path] ** Message: Process optimal [Src span [Segment("match forward"->"intron forward"):[est2genome]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o ** Message: Adding function [Src_32_span_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o ** Message: Adding function [Src_32_span_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path] ** Message: Process optimal [Src span traceback [Segment("match forward"->"intron forward"):[est2genome]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o ** Message: Adding function [Src_32_span_32_traceback_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path] ** Message: Process optimal [Dst span [Segment("intron forward"->"match forward"):[est2genome]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o ** Message: Adding function [Dst_32_span_32__91_Segment_40__34_intron_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o ** Message: Adding function [Dst_32_span_32__91_Segment_40__34_intron_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_est2genome_58_reverse_58_notraceback_58_boundary.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_est2genome_58_reverse_58_notraceback_58_boundary.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_est2genome_58_forward_58_traceback_58_boundary.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_est2genome_58_forward_58_traceback_58_boundary.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_est2genome_58_reverse_58_notraceback_58_boundary.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_est2genome_58_reverse_58_notraceback_58_boundary.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_est2genome_58_reverse_58_notraceback_58_boundary.o ** Message: Adding function [Scheduler_Cell_process_est2genome_58_reverse_58_notraceback_58_boundary] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_est2genome_58_forward_58_traceback_58_boundary.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_est2genome_58_forward_58_traceback_58_boundary.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_est2genome_58_forward_58_traceback_58_boundary.o ** Message: Adding function [Scheduler_Cell_process_est2genome_58_forward_58_traceback_58_boundary] ** Message: Processing model [ner] ** Message: Bootstrapper processing model [NER:affine:local:dna2dna] ** Message: Process optimal [optimal:NER:affine:local:dna2dna] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_path.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_region.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_region.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_checkpoint.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_checkpoint.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_path_32_continuation.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_path_32_continuation.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_score.o ** Message: Adding function [optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_path.o ** Message: Adding function [optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_path] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_region.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_region.o ** Message: Adding function [optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_region] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_checkpoint.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_checkpoint.o ** Message: Adding function [optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_checkpoint] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_path_32_continuation.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_path_32_continuation.o ** Message: Adding function [optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_path_32_continuation] ** Message: Process optimal [Terminal [Segment("START"->"match"):[NER:affine:local:dna2dna]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o ** Message: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o ** Message: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path] ** Message: Process optimal [Terminal [Segment("match"->"END"):[NER:affine:local:dna2dna]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o ** Message: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o ** Message: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path] ** Message: Process optimal [HeuristicJoin:[Segment("match"->"match"):[NER:affine:local:dna2dna]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o ** Message: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o ** Message: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path] ** Message: Process optimal [Src span [Segment("match"->"ner"):[NER:affine:local:dna2dna]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o ** Message: Adding function [Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o ** Message: Adding function [Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path] ** Message: Process optimal [Src span traceback [Segment("match"->"ner"):[NER:affine:local:dna2dna]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o ** Message: Adding function [Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path] ** Message: Process optimal [Dst span [Segment("ner"->"match"):[NER:affine:local:dna2dna]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o ** Message: Adding function [Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o ** Message: Adding function [Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_NER_58_affine_58_local_58_dna2dna_58_reverse_58_notraceback_58_boundary.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_NER_58_affine_58_local_58_dna2dna_58_reverse_58_notraceback_58_boundary.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_NER_58_affine_58_local_58_dna2dna_58_forward_58_traceback_58_boundary.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_NER_58_affine_58_local_58_dna2dna_58_forward_58_traceback_58_boundary.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_NER_58_affine_58_local_58_dna2dna_58_reverse_58_notraceback_58_boundary.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_NER_58_affine_58_local_58_dna2dna_58_reverse_58_notraceback_58_boundary.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_NER_58_affine_58_local_58_dna2dna_58_reverse_58_notraceback_58_boundary.o ** Message: Adding function [Scheduler_Cell_process_NER_58_affine_58_local_58_dna2dna_58_reverse_58_notraceback_58_boundary] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_NER_58_affine_58_local_58_dna2dna_58_forward_58_traceback_58_boundary.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_NER_58_affine_58_local_58_dna2dna_58_forward_58_traceback_58_boundary.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_NER_58_affine_58_local_58_dna2dna_58_forward_58_traceback_58_boundary.o ** Message: Adding function [Scheduler_Cell_process_NER_58_affine_58_local_58_dna2dna_58_forward_58_traceback_58_boundary] ** Message: Bootstrapper processing model [NER:affine:local:protein2protein] ** Message: Process optimal [optimal:NER:affine:local:protein2protein] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_path.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_region.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_region.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_checkpoint.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_checkpoint.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_path_32_continuation.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_path_32_continuation.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_score.o ** Message: Adding function [optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_path.o ** Message: Adding function [optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_path] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_region.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_region.o ** Message: Adding function [optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_region] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_checkpoint.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_checkpoint.o ** Message: Adding function [optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_checkpoint] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_path_32_continuation.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_path_32_continuation.o ** Message: Adding function [optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_path_32_continuation] ** Message: Process optimal [Terminal [Segment("START"->"match"):[NER:affine:local:protein2protein]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o ** Message: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o ** Message: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path] ** Message: Process optimal [Terminal [Segment("match"->"END"):[NER:affine:local:protein2protein]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o ** Message: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o ** Message: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path] ** Message: Process optimal [HeuristicJoin:[Segment("match"->"match"):[NER:affine:local:protein2protein]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o ** Message: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o ** Message: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path] ** Message: Process optimal [Src span [Segment("match"->"ner"):[NER:affine:local:protein2protein]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o ** Message: Adding function [Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o ** Message: Adding function [Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path] ** Message: Process optimal [Src span traceback [Segment("match"->"ner"):[NER:affine:local:protein2protein]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o ** Message: Adding function [Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path] ** Message: Process optimal [Dst span [Segment("ner"->"match"):[NER:affine:local:protein2protein]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o ** Message: Adding function [Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o ** Message: Adding function [Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_NER_58_affine_58_local_58_protein2protein_58_reverse_58_notraceback_58_boundary.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_NER_58_affine_58_local_58_protein2protein_58_reverse_58_notraceback_58_boundary.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_NER_58_affine_58_local_58_protein2protein_58_forward_58_traceback_58_boundary.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_NER_58_affine_58_local_58_protein2protein_58_forward_58_traceback_58_boundary.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_NER_58_affine_58_local_58_protein2protein_58_reverse_58_notraceback_58_boundary.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_NER_58_affine_58_local_58_protein2protein_58_reverse_58_notraceback_58_boundary.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_NER_58_affine_58_local_58_protein2protein_58_reverse_58_notraceback_58_boundary.o ** Message: Adding function [Scheduler_Cell_process_NER_58_affine_58_local_58_protein2protein_58_reverse_58_notraceback_58_boundary] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_NER_58_affine_58_local_58_protein2protein_58_forward_58_traceback_58_boundary.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_NER_58_affine_58_local_58_protein2protein_58_forward_58_traceback_58_boundary.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_NER_58_affine_58_local_58_protein2protein_58_forward_58_traceback_58_boundary.o ** Message: Adding function [Scheduler_Cell_process_NER_58_affine_58_local_58_protein2protein_58_forward_58_traceback_58_boundary] ** Message: Processing model [p2d] ** Message: Bootstrapper processing model [protein2dna:local] ** Message: Process optimal [optimal:protein2dna:local] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_path.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_region.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_region.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_checkpoint.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_checkpoint.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_path_32_continuation.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_path_32_continuation.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_score.o ** Message: Adding function [optimal_58_protein2dna_58_local_32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_path.o ** Message: Adding function [optimal_58_protein2dna_58_local_32_find_32_path] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_region.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_region.o ** Message: Adding function [optimal_58_protein2dna_58_local_32_find_32_region] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_checkpoint.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_checkpoint.o ** Message: Adding function [optimal_58_protein2dna_58_local_32_find_32_checkpoint] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_path_32_continuation.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_path_32_continuation.o ** Message: Adding function [optimal_58_protein2dna_58_local_32_find_32_path_32_continuation] ** Message: Process optimal [Terminal [Segment("START"->"match"):[protein2dna:local]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score.o ** Message: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path.o ** Message: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path] ** Message: Process optimal [Terminal [Segment("match"->"END"):[protein2dna:local]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score.o ** Message: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path.o ** Message: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path] ** Message: Process optimal [HeuristicJoin:[Segment("match"->"match"):[protein2dna:local]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score.o ** Message: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path.o ** Message: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_protein2dna_58_local_58_reverse_58_traceback_58_seeded.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_protein2dna_58_local_58_reverse_58_traceback_58_seeded.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_protein2dna_58_local_58_forward_58_traceback_58_seeded.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_protein2dna_58_local_58_forward_58_traceback_58_seeded.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_protein2dna_58_local_58_reverse_58_traceback_58_seeded.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_protein2dna_58_local_58_reverse_58_traceback_58_seeded.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_protein2dna_58_local_58_reverse_58_traceback_58_seeded.o ** Message: Adding function [Scheduler_Cell_process_protein2dna_58_local_58_reverse_58_traceback_58_seeded] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_protein2dna_58_local_58_forward_58_traceback_58_seeded.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_protein2dna_58_local_58_forward_58_traceback_58_seeded.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_protein2dna_58_local_58_forward_58_traceback_58_seeded.o ** Message: Adding function [Scheduler_Cell_process_protein2dna_58_local_58_forward_58_traceback_58_seeded] ** Message: Processing model [p2d:b] ** Message: Bootstrapper processing model [protein2dna:bestfit] ** Message: Process optimal [optimal:protein2dna:bestfit] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_path.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_region.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_region.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_checkpoint.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_checkpoint.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_path_32_continuation.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_path_32_continuation.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_score.o ** Message: Adding function [optimal_58_protein2dna_58_bestfit_32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_path.o ** Message: Adding function [optimal_58_protein2dna_58_bestfit_32_find_32_path] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_region.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_region.o ** Message: Adding function [optimal_58_protein2dna_58_bestfit_32_find_32_region] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_checkpoint.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_checkpoint.o ** Message: Adding function [optimal_58_protein2dna_58_bestfit_32_find_32_checkpoint] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_path_32_continuation.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_path_32_continuation.o ** Message: Adding function [optimal_58_protein2dna_58_bestfit_32_find_32_path_32_continuation] ** Message: Processing model [p2g] ** Message: Bootstrapper processing model [protein2genome:local] ** Message: Process optimal [optimal:protein2genome:local] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_path.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_region.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_region.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_checkpoint.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_checkpoint.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_path_32_continuation.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_path_32_continuation.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_score.o ** Message: Adding function [optimal_58_protein2genome_58_local_32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_path.o ** Message: Adding function [optimal_58_protein2genome_58_local_32_find_32_path] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_region.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_region.o ** Message: Adding function [optimal_58_protein2genome_58_local_32_find_32_region] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_checkpoint.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_checkpoint.o ** Message: Adding function [optimal_58_protein2genome_58_local_32_find_32_checkpoint] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_path_32_continuation.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_path_32_continuation.o ** Message: Adding function [optimal_58_protein2genome_58_local_32_find_32_path_32_continuation] ** Message: Process optimal [Terminal [Segment("START"->"match"):[protein2genome:local]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o ** Message: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o ** Message: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path] ** Message: Process optimal [Terminal [Segment("match"->"END"):[protein2genome:local]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o ** Message: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o ** Message: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path] ** Message: Process optimal [HeuristicJoin:[Segment("match"->"match"):[protein2genome:local]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o ** Message: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o ** Message: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path] ** Message: Process optimal [Src span [Segment("match"->"intron 0:0 phase-T"):[protein2genome:local]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o ** Message: Adding function [Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o ** Message: Adding function [Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path] ** Message: Process optimal [Src span traceback [Segment("match"->"intron 0:0 phase-T"):[protein2genome:local]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o ** Message: Adding function [Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path] ** Message: Process optimal [Dst span [Segment("intron 0:0 phase-T"->"match"):[protein2genome:local]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_0_58_0_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_0_58_0_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_0_58_0_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_0_58_0_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_0_58_0_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_0_58_0_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_0_58_0_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o ** Message: Adding function [Dst_32_span_32__91_Segment_40__34_intron_32_0_58_0_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_0_58_0_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_0_58_0_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_0_58_0_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o ** Message: Adding function [Dst_32_span_32__91_Segment_40__34_intron_32_0_58_0_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path] ** Message: Process optimal [Src span [Segment("match"->"intron 1:2 phase-T"):[protein2genome:local]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o ** Message: Adding function [Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o ** Message: Adding function [Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path] ** Message: Process optimal [Src span traceback [Segment("match"->"intron 1:2 phase-T"):[protein2genome:local]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o ** Message: Adding function [Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path] ** Message: Process optimal [Dst span [Segment("intron 1:2 phase-T"->"match"):[protein2genome:local]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_1_58_2_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_1_58_2_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_1_58_2_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_1_58_2_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_1_58_2_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_1_58_2_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_1_58_2_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o ** Message: Adding function [Dst_32_span_32__91_Segment_40__34_intron_32_1_58_2_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_1_58_2_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_1_58_2_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_1_58_2_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o ** Message: Adding function [Dst_32_span_32__91_Segment_40__34_intron_32_1_58_2_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path] ** Message: Process optimal [Src span [Segment("match"->"intron 2:1 phase-T"):[protein2genome:local]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o ** Message: Adding function [Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o ** Message: Adding function [Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path] ** Message: Process optimal [Src span traceback [Segment("match"->"intron 2:1 phase-T"):[protein2genome:local]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o ** Message: Adding function [Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path] ** Message: Process optimal [Dst span [Segment("intron 2:1 phase-T"->"match"):[protein2genome:local]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_2_58_1_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_2_58_1_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_2_58_1_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_2_58_1_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_2_58_1_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_2_58_1_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_2_58_1_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o ** Message: Adding function [Dst_32_span_32__91_Segment_40__34_intron_32_2_58_1_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_2_58_1_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_2_58_1_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_2_58_1_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o ** Message: Adding function [Dst_32_span_32__91_Segment_40__34_intron_32_2_58_1_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_protein2genome_58_local_58_reverse_58_notraceback_58_boundary.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_protein2genome_58_local_58_reverse_58_notraceback_58_boundary.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_protein2genome_58_local_58_forward_58_traceback_58_boundary.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_protein2genome_58_local_58_forward_58_traceback_58_boundary.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_protein2genome_58_local_58_reverse_58_notraceback_58_boundary.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_protein2genome_58_local_58_reverse_58_notraceback_58_boundary.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_protein2genome_58_local_58_reverse_58_notraceback_58_boundary.o ** Message: Adding function [Scheduler_Cell_process_protein2genome_58_local_58_reverse_58_notraceback_58_boundary] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_protein2genome_58_local_58_forward_58_traceback_58_boundary.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_protein2genome_58_local_58_forward_58_traceback_58_boundary.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_protein2genome_58_local_58_forward_58_traceback_58_boundary.o ** Message: Adding function [Scheduler_Cell_process_protein2genome_58_local_58_forward_58_traceback_58_boundary] ** Message: Processing model [p2g:b] ** Message: Bootstrapper processing model [protein2genome:bestfit] ** Message: Process optimal [optimal:protein2genome:bestfit] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_path.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_region.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_region.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_checkpoint.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_checkpoint.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_path_32_continuation.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_path_32_continuation.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_score.o ** Message: Adding function [optimal_58_protein2genome_58_bestfit_32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_path.o ** Message: Adding function [optimal_58_protein2genome_58_bestfit_32_find_32_path] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_region.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_region.o ** Message: Adding function [optimal_58_protein2genome_58_bestfit_32_find_32_region] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_checkpoint.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_checkpoint.o ** Message: Adding function [optimal_58_protein2genome_58_bestfit_32_find_32_checkpoint] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_path_32_continuation.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_path_32_continuation.o ** Message: Adding function [optimal_58_protein2genome_58_bestfit_32_find_32_path_32_continuation] ** Message: Processing model [c2c] ** Message: Bootstrapper processing model [coding2coding] ** Message: Process optimal [optimal:coding2coding] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_path.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_region.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_region.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_checkpoint.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_checkpoint.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_path_32_continuation.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_path_32_continuation.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_score.o ** Message: Adding function [optimal_58_coding2coding_32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_path.o ** Message: Adding function [optimal_58_coding2coding_32_find_32_path] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_region.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_region.o ** Message: Adding function [optimal_58_coding2coding_32_find_32_region] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_checkpoint.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_checkpoint.o ** Message: Adding function [optimal_58_coding2coding_32_find_32_checkpoint] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_path_32_continuation.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_path_32_continuation.o ** Message: Adding function [optimal_58_coding2coding_32_find_32_path_32_continuation] ** Message: Process optimal [Terminal [Segment("START"->"match"):[coding2coding]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score.o ** Message: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path.o ** Message: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path] ** Message: Process optimal [Terminal [Segment("match"->"END"):[coding2coding]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_score.o ** Message: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_path.o ** Message: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_path] ** Message: Process optimal [HeuristicJoin:[Segment("match"->"match"):[coding2coding]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score.o ** Message: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path.o ** Message: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_coding2coding_58_reverse_58_traceback_58_seeded.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_coding2coding_58_reverse_58_traceback_58_seeded.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_coding2coding_58_forward_58_traceback_58_seeded.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_coding2coding_58_forward_58_traceback_58_seeded.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_coding2coding_58_reverse_58_traceback_58_seeded.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_coding2coding_58_reverse_58_traceback_58_seeded.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_coding2coding_58_reverse_58_traceback_58_seeded.o ** Message: Adding function [Scheduler_Cell_process_coding2coding_58_reverse_58_traceback_58_seeded] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_coding2coding_58_forward_58_traceback_58_seeded.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_coding2coding_58_forward_58_traceback_58_seeded.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_coding2coding_58_forward_58_traceback_58_seeded.o ** Message: Adding function [Scheduler_Cell_process_coding2coding_58_forward_58_traceback_58_seeded] ** Message: Processing model [c2g] ** Message: Bootstrapper processing model [coding2genome] ** Message: Process optimal [optimal:coding2genome] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_path.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_region.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_region.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_checkpoint.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_checkpoint.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_path_32_continuation.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_path_32_continuation.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_score.o ** Message: Adding function [optimal_58_coding2genome_32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_path.o ** Message: Adding function [optimal_58_coding2genome_32_find_32_path] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_region.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_region.o ** Message: Adding function [optimal_58_coding2genome_32_find_32_region] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_checkpoint.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_checkpoint.o ** Message: Adding function [optimal_58_coding2genome_32_find_32_checkpoint] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_path_32_continuation.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_path_32_continuation.o ** Message: Adding function [optimal_58_coding2genome_32_find_32_path_32_continuation] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_coding2genome_58_reverse_58_notraceback_58_boundary.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_coding2genome_58_reverse_58_notraceback_58_boundary.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_coding2genome_58_forward_58_traceback_58_boundary.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_coding2genome_58_forward_58_traceback_58_boundary.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_coding2genome_58_reverse_58_notraceback_58_boundary.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_coding2genome_58_reverse_58_notraceback_58_boundary.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_coding2genome_58_reverse_58_notraceback_58_boundary.o ** Message: Adding function [Scheduler_Cell_process_coding2genome_58_reverse_58_notraceback_58_boundary] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_coding2genome_58_forward_58_traceback_58_boundary.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_coding2genome_58_forward_58_traceback_58_boundary.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_coding2genome_58_forward_58_traceback_58_boundary.o ** Message: Adding function [Scheduler_Cell_process_coding2genome_58_forward_58_traceback_58_boundary] ** Message: Processing model [cd2g] ** Message: Bootstrapper processing model [cdna2genome] ** Message: Process optimal [optimal:cdna2genome] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_score.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_path.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_path.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_region.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_region.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_checkpoint.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_checkpoint.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_path_32_continuation.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_path_32_continuation.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_score.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_score.o ** Message: Adding function [optimal_58_cdna2genome_32_find_32_score] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_path.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_path.o ** Message: Adding function [optimal_58_cdna2genome_32_find_32_path] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_region.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_region.o ** Message: Adding function [optimal_58_cdna2genome_32_find_32_region] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_checkpoint.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_checkpoint.o ** Message: Adding function [optimal_58_cdna2genome_32_find_32_checkpoint] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_path_32_continuation.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_path_32_continuation.o ** Message: Adding function [optimal_58_cdna2genome_32_find_32_path_32_continuation] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_cdna2genome_58_reverse_58_notraceback_58_boundary.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_cdna2genome_58_reverse_58_notraceback_58_boundary.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/struct -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/«PKGBUILDDIR»/src/model -I/«PKGBUILDDIR»/src/comparison -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/bsdp -I/«PKGBUILDDIR»/src/sdp -o /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_cdna2genome_58_forward_58_traceback_58_boundary.o -c /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_cdna2genome_58_forward_58_traceback_58_boundary.c ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_cdna2genome_58_reverse_58_notraceback_58_boundary.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_cdna2genome_58_reverse_58_notraceback_58_boundary.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_cdna2genome_58_reverse_58_notraceback_58_boundary.o ** Message: Adding function [Scheduler_Cell_process_cdna2genome_58_reverse_58_notraceback_58_boundary] ** Message: Adding: [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_cdna2genome_58_forward_58_traceback_58_boundary.o] ** Message: Adding object file [/«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_cdna2genome_58_forward_58_traceback_58_boundary.o] to archive ar -Sq c4_model_archive.a /«PKGBUILDDIR»/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_cdna2genome_58_forward_58_traceback_58_boundary.o ** Message: Adding function [Scheduler_Cell_process_cdna2genome_58_forward_58_traceback_58_boundary] ** Message: Compiling with: [gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/«PKGBUILDDIR»/src/c4 -I/«PKGBUILDDIR»/src/sequence -I/«PKGBUILDDIR»/src/general -I/«PKGBUILDDIR»/src/struct -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -o c4_model_lookup.o -c c4_model_lookup.c] c4_model_lookup.c: In function 'Bootstrapper_lookup': c4_model_lookup.c:5:9: warning: implicit declaration of function 'strcmp' [-Wimplicit-function-declaration] if(!strcmp(name, "optimal_58_ungapped_58_dna2dna_32_find_32_score")) ^ ** Message: Adding: [c4_model_lookup.o] ** Message: Adding object file [c4_model_lookup.o] to archive ar -Sq c4_model_archive.a c4_model_lookup.o ** Message: Indexing archive [c4_model_archive.a] ranlib c4_model_archive.a ** Message: Done ** Message: Finished building bootstrapping components make all-am make[4]: Entering directory '/«PKGBUILDDIR»/src/program' gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/comparison -I../../src/struct -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/model -I../../src/hub -I../../src/general -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o exonerate.o exonerate.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I../../src/sequence -I../../src/database -I../../src/comparison -I../../src/struct -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/model -I../../src/hub -I../../src/general -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -I. \ -DUSE_COMPILED_MODELS \ -c ../../src/c4/viterbi.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I../../src/sequence -I../../src/database -I../../src/comparison -I../../src/struct -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/model -I../../src/hub -I../../src/general -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -I. \ -DUSE_COMPILED_MODELS \ -c ../../src/sdp/scheduler.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o exonerate exonerate.o viterbi.o scheduler.o c4_model_archive.a ../../src/comparison/wordhood.o ../../src/comparison/hspset.o ../../src/comparison/seeder.o ../../src/comparison/comparison.o ../../src/database/fastapipe.o ../../src/database/fastadb.o ../../src/struct/dejavu.o ../../src/struct/fsm.o ../../src/struct/vfsm.o ../../src/struct/sparsecache.o ../../src/hub/gam.o ../../src/hub/bsam.o ../../src/hub/analysis.o ../../src/general/compoundfile.o ../../src/c4/c4.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/opair.o ../../src/c4/alignment.o ../../src/c4/optimal.o ../../src/c4/layout.o ../../src/c4/region.o ../../src/c4/subopt.o ../../src/bsdp/bsdp.o ../../src/bsdp/sar.o ../../src/bsdp/heuristic.o ../../src/bsdp/hpair.o ../../src/sdp/boundary.o ../../src/sdp/sdp.o ../../src/sdp/lookahead.o ../../src/sdp/straceback.o ../../src/struct/matrix.o ../../src/struct/slist.o ../../src/struct/pqueue.o ../../src/struct/recyclebin.o ../../src/struct/rangetree.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/translate.o ../../src/sequence/splice.o ../../src/model/affine.o ../../src/model/est2genome.o ../../src/model/ner.o ../../src/model/protein2dna.o ../../src/model/protein2genome.o ../../src/model/coding2coding.o ../../src/model/coding2genome.o ../../src/model/cdna2genome.o ../../src/model/genome2genome.o ../../src/model/ungapped.o ../../src/model/intron.o ../../src/model/frameshift.o ../../src/model/phase.o ../../src/model/modeltype.o ../../src/general/argument.o ../../src/general/lineparse.o ../../src/general/socket.o ../../src/comparison/match.o ../../src/sequence/submat.o ../../src/sequence/codonsubmat.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/comparison -I../../src/struct -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/model -I../../src/hub -I../../src/general -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o ipcress.o ipcress.c ipcress.c: In function 'Ipcress_prepare_PCR': ipcress.c:264:9: warning: 'g_strup' is deprecated [-Wdeprecated-declarations] g_strup(primer_a); ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from ipcress.c:16: /usr/include/glib-2.0/glib/gstrfuncs.h:209:23: note: declared here gchar* g_strup (gchar *string); ^ ipcress.c:265:9: warning: 'g_strup' is deprecated [-Wdeprecated-declarations] g_strup(primer_b); ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from ipcress.c:16: /usr/include/glib-2.0/glib/gstrfuncs.h:209:23: note: declared here gchar* g_strup (gchar *string); ^ gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o ipcress ipcress.o ../../src/comparison/pcr.o ../../src/comparison/wordhood.o ../../src/database/fastadb.o ../../src/sequence/alphabet.o ../../src/sequence/sequence.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/sequence/submat.o ../../src/sequence/codonsubmat.o ../../src/struct/fsm.o ../../src/struct/slist.o ../../src/struct/matrix.o ../../src/struct/recyclebin.o ../../src/struct/sparsecache.o ../../src/general/lineparse.o ../../src/general/argument.o ../../src/general/compoundfile.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/comparison -I../../src/struct -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/model -I../../src/hub -I../../src/general -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -DSOURCE_ROOT_DIR="\"/«PKGBUILDDIR»\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o exonerate-server.o exonerate-server.c exonerate-server.c: In function 'Exonerate_Server_process': exonerate-server.c:603:40: warning: format '%lld' expects argument of type 'long long int', but argument 4 has type 'guint64 {aka long unsigned int}' [-Wformat=] (*reply) = g_strdup_printf("dbinfo: %s %s %lld %lld %lld\n", ^ exonerate-server.c:603:40: warning: format '%lld' expects argument of type 'long long int', but argument 5 has type 'guint64 {aka long unsigned int}' [-Wformat=] exonerate-server.c:603:40: warning: format '%lld' expects argument of type 'long long int', but argument 6 has type 'guint64 {aka long unsigned int}' [-Wformat=] gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o exonerate-server exonerate-server.o ../../src/general/socket.o ../../src/general/argument.o ../../src/comparison/hspset.o ../../src/comparison/match.o ../../src/comparison/wordhood.o ../../src/database/dataset.o ../../src/database/index.o ../../src/database/fastadb.o ../../src/struct/bitarray.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/struct/splaytree.o ../../src/struct/noitree.o ../../src/struct/vfsm.o ../../src/struct/pqueue.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/translate.o ../../src/sequence/splice.o ../../src/sequence/submat.o ../../src/sequence/codonsubmat.o ../../src/general/compoundfile.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread make[4]: Leaving directory '/«PKGBUILDDIR»/src/program' make[3]: Leaving directory '/«PKGBUILDDIR»/src/program' Making all in util make[3]: Entering directory '/«PKGBUILDDIR»/src/util' gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o fastaclean.o fastaclean.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastaclean fastaclean.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o fastaclip.o fastaclip.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastaclip fastaclip.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o fastachecksum.o fastachecksum.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastachecksum fastachecksum.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o fastacomposition.o fastacomposition.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastacomposition fastacomposition.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o fastadiff.o fastadiff.c fastadiff.c: In function 'fasta_diff': fastadiff.c:70:13: warning: 'g_strcasecmp' is deprecated [-Wdeprecated-declarations] comp = g_strcasecmp; ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from ../../src/general/argument.h:26, from fastadiff.c:19: /usr/include/glib-2.0/glib/gstrfuncs.h:200:23: note: declared here gint g_strcasecmp (const gchar *s1, ^ gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastadiff fastadiff.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o fastaexplode.o fastaexplode.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastaexplode fastaexplode.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o fastafetch.o fastafetch.c In file included from ../../src/database/fastadb.h:26:0, from fastafetch.c:22: fastafetch.c: In function 'fasta_index_lookup': ../../src/general/compoundfile.h:49:33: warning: format '%lld' expects argument of type 'long long int *', but argument 3 has type 'CompoundFile_Pos * {aka long int *}' [-Wformat=] #define CompoundFile_Pos_format "%lld" ^ ../../src/general/compoundfile.h:57:39: note: in expansion of macro 'CompoundFile_Pos_format' CompoundFile_Pragma sscanf((src), CompoundFile_Pos_format, (dst)) ^ fastafetch.c:71:13: note: in expansion of macro 'CompoundFile_Pos_scan' CompoundFile_Pos_scan(curr->str, &result); ^ fastafetch.c: In function 'get_query_list': fastafetch.c:121:5: warning: 'g_strcasecmp' is deprecated [-Wdeprecated-declarations] if(!g_strcasecmp(query, "stdin")){ ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from ../../src/general/argument.h:26, from fastafetch.c:21: /usr/include/glib-2.0/glib/gstrfuncs.h:200:23: note: declared here gint g_strcasecmp (const gchar *s1, ^ gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastafetch fastafetch.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o fastahardmask.o fastahardmask.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastahardmask fastahardmask.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o fastaindex.o fastaindex.c In file included from ../../src/database/fastadb.h:26:0, from fastaindex.c:21: fastaindex.c: In function 'fasta_index_build': ../../src/general/compoundfile.h:49:33: warning: format '%lld' expects argument of type 'long long int', but argument 3 has type 'CompoundFile_Pos {aka long int}' [-Wformat=] #define CompoundFile_Pos_format "%lld" ^ ../../src/general/compoundfile.h:55:39: note: in expansion of macro 'CompoundFile_Pos_format' CompoundFile_Pragma fprintf((fp), CompoundFile_Pos_format, (pos)) ^ fastaindex.c:50:9: note: in expansion of macro 'CompoundFile_Pos_print' CompoundFile_Pos_print(fp, fdbs_list[i]->location->pos); ^ gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastaindex fastaindex.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o fastalength.o fastalength.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastalength fastalength.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o fastanrdb.o fastanrdb.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastanrdb fastanrdb.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o fastaoverlap.o fastaoverlap.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastaoverlap fastaoverlap.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o fastareformat.o fastareformat.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastareformat fastareformat.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o fastaremove.o fastaremove.c fastaremove.c: In function 'Argument_main': fastaremove.c:73:5: warning: 'g_strcasecmp' is deprecated [-Wdeprecated-declarations] if(!g_strcasecmp(remove_path, "stdin")){ ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from ../../src/general/argument.h:26, from fastaremove.c:19: /usr/include/glib-2.0/glib/gstrfuncs.h:200:23: note: declared here gint g_strcasecmp (const gchar *s1, ^ gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastaremove fastaremove.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o fastarevcomp.o fastarevcomp.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastarevcomp fastarevcomp.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o fastasoftmask.o fastasoftmask.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastasoftmask fastasoftmask.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o fastasort.o fastasort.c fastasort.c: In function 'SortKey_Mask_create': fastasort.c:130:5: warning: 'g_strcasecmp' is deprecated [-Wdeprecated-declarations] if(!g_strcasecmp(sort_key, "id")) ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from ../../src/general/argument.h:26, from fastasort.c:20: /usr/include/glib-2.0/glib/gstrfuncs.h:200:23: note: declared here gint g_strcasecmp (const gchar *s1, ^ fastasort.c:132:5: warning: 'g_strcasecmp' is deprecated [-Wdeprecated-declarations] else if(!g_strcasecmp(sort_key, "len")) ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from ../../src/general/argument.h:26, from fastasort.c:20: /usr/include/glib-2.0/glib/gstrfuncs.h:200:23: note: declared here gint g_strcasecmp (const gchar *s1, ^ fastasort.c:134:5: warning: 'g_strcasecmp' is deprecated [-Wdeprecated-declarations] else if(!g_strcasecmp(sort_key, "seq")) ^ In file included from /usr/include/glib-2.0/glib.h:79:0, from ../../src/general/argument.h:26, from fastasort.c:20: /usr/include/glib-2.0/glib/gstrfuncs.h:200:23: note: declared here gint g_strcasecmp (const gchar *s1, ^ gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastasort fastasort.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o fastasplit.o fastasplit.c fastasplit.c: In function 'Argument_main': fastasplit.c:92:13: warning: 'g_basename' is deprecated: Use 'g_path_get_basename' instead [-Wdeprecated-declarations] output_dir, G_DIR_SEPARATOR, g_basename(query_path)); ^ In file included from /usr/include/glib-2.0/glib.h:48:0, from ../../src/general/argument.h:26, from fastasplit.c:20: /usr/include/glib-2.0/glib/gfileutils.h:168:14: note: declared here const gchar *g_basename (const gchar *file_name); ^ gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastasplit fastasplit.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o fastasubseq.o fastasubseq.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastasubseq fastasubseq.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o fastatranslate.o fastatranslate.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastatranslate fastatranslate.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o fastavalidcds.o fastavalidcds.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastavalidcds fastavalidcds.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o fasta2esd.o fasta2esd.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o fasta2esd fasta2esd.o ../../src/database/dataset.o ../../src/struct/bitarray.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o fastaannotatecdna.o fastaannotatecdna.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastaannotatecdna fastaannotatecdna.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o esd2esi.o esd2esi.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o esd2esi esd2esi.o ../../src/database/dataset.o ../../src/database/index.o ../../src/struct/bitarray.o ../../src/struct/vfsm.o ../../src/struct/pqueue.o ../../src/struct/recyclebin.o ../../src/struct/rangetree.o ../../src/struct/noitree.o ../../src/struct/splaytree.o ../../src/sequence/submat.o ../../src/sequence/codonsubmat.o ../../src/comparison/wordhood.o ../../src/comparison/hspset.o ../../src/comparison/match.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 -lpthread make[3]: Leaving directory '/«PKGBUILDDIR»/src/util' make[3]: Entering directory '/«PKGBUILDDIR»/src' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/«PKGBUILDDIR»/src' make[2]: Leaving directory '/«PKGBUILDDIR»/src' Making all in test make[2]: Entering directory '/«PKGBUILDDIR»/test' Making all in data make[3]: Entering directory '/«PKGBUILDDIR»/test/data' Making all in cdna make[4]: Entering directory '/«PKGBUILDDIR»/test/data/cdna' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/«PKGBUILDDIR»/test/data/cdna' Making all in protein make[4]: Entering directory '/«PKGBUILDDIR»/test/data/protein' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/«PKGBUILDDIR»/test/data/protein' make[4]: Entering directory '/«PKGBUILDDIR»/test/data' make[4]: Nothing to be done for 'all-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/test/data' make[3]: Leaving directory '/«PKGBUILDDIR»/test/data' Making all in exonerate make[3]: Entering directory '/«PKGBUILDDIR»/test/exonerate' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/«PKGBUILDDIR»/test/exonerate' Making all in ipcress make[3]: Entering directory '/«PKGBUILDDIR»/test/ipcress' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/«PKGBUILDDIR»/test/ipcress' Making all in util make[3]: Entering directory '/«PKGBUILDDIR»/test/util' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/«PKGBUILDDIR»/test/util' make[3]: Entering directory '/«PKGBUILDDIR»/test' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/«PKGBUILDDIR»/test' make[2]: Leaving directory '/«PKGBUILDDIR»/test' make[2]: Entering directory '/«PKGBUILDDIR»' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/«PKGBUILDDIR»' make[1]: Leaving directory '/«PKGBUILDDIR»' debian/rules override_dh_auto_test make[1]: Entering directory '/«PKGBUILDDIR»' /usr/bin/make -C test check make[2]: Entering directory '/«PKGBUILDDIR»/test' Making check in data make[3]: Entering directory '/«PKGBUILDDIR»/test/data' Making check in cdna make[4]: Entering directory '/«PKGBUILDDIR»/test/data/cdna' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/«PKGBUILDDIR»/test/data/cdna' Making check in protein make[4]: Entering directory '/«PKGBUILDDIR»/test/data/protein' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/«PKGBUILDDIR»/test/data/protein' make[4]: Entering directory '/«PKGBUILDDIR»/test/data' make[4]: Nothing to be done for 'check-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/test/data' make[3]: Leaving directory '/«PKGBUILDDIR»/test/data' Making check in exonerate make[3]: Entering directory '/«PKGBUILDDIR»/test/exonerate' /usr/bin/make check-TESTS make[4]: Entering directory '/«PKGBUILDDIR»/test/exonerate' make[5]: Entering directory '/«PKGBUILDDIR»/test/exonerate' PASS: exonerate.simple.test.sh ============================================================================ Testsuite summary for ============================================================================ # TOTAL: 1 # PASS: 1 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[5]: Leaving directory '/«PKGBUILDDIR»/test/exonerate' make[4]: Leaving directory '/«PKGBUILDDIR»/test/exonerate' make[3]: Leaving directory '/«PKGBUILDDIR»/test/exonerate' Making check in ipcress make[3]: Entering directory '/«PKGBUILDDIR»/test/ipcress' /usr/bin/make check-TESTS make[4]: Entering directory '/«PKGBUILDDIR»/test/ipcress' make[5]: Entering directory '/«PKGBUILDDIR»/test/ipcress' PASS: ipcress.simple.test.sh ============================================================================ Testsuite summary for ============================================================================ # TOTAL: 1 # PASS: 1 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[5]: Leaving directory '/«PKGBUILDDIR»/test/ipcress' make[4]: Leaving directory '/«PKGBUILDDIR»/test/ipcress' make[3]: Leaving directory '/«PKGBUILDDIR»/test/ipcress' Making check in util make[3]: Entering directory '/«PKGBUILDDIR»/test/util' /usr/bin/make check-TESTS make[4]: Entering directory '/«PKGBUILDDIR»/test/util' make[5]: Entering directory '/«PKGBUILDDIR»/test/util' PASS: fastaclean.test.sh PASS: fastaclip.test.sh PASS: fastacomposition.test.sh PASS: fastadiff.test.sh PASS: fastaexpode.test.sh PASS: fastaindex.fastafetch.test.sh PASS: fastalength.test.sh PASS: fastanrdb.test.sh PASS: fastaoverlap.test.sh PASS: fastarefomat.test.sh PASS: fastaremove.test.sh PASS: fastarevcomp.test.sh PASS: fastasoftmask.fastahardmask.test.sh PASS: fastasort.test.sh PASS: fastasplit.test.sh PASS: fastasubseq.test.sh PASS: fastatranslate.test.sh PASS: fastavalidcds.test.sh ============================================================================ Testsuite summary for ============================================================================ # TOTAL: 18 # PASS: 18 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[5]: Leaving directory '/«PKGBUILDDIR»/test/util' make[4]: Leaving directory '/«PKGBUILDDIR»/test/util' make[3]: Leaving directory '/«PKGBUILDDIR»/test/util' make[3]: Entering directory '/«PKGBUILDDIR»/test' make[3]: Nothing to be done for 'check-am'. make[3]: Leaving directory '/«PKGBUILDDIR»/test' make[2]: Leaving directory '/«PKGBUILDDIR»/test' make[1]: Leaving directory '/«PKGBUILDDIR»' fakeroot debian/rules binary-arch dh binary-arch --with autoreconf dh_testroot -a dh_prep -a dh_auto_install -a make -j1 install DESTDIR=/«PKGBUILDDIR»/debian/exonerate AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/«PKGBUILDDIR»' Making install in doc make[2]: Entering directory '/«PKGBUILDDIR»/doc' Making install in man make[3]: Entering directory '/«PKGBUILDDIR»/doc/man' Making install in man1 make[4]: Entering directory '/«PKGBUILDDIR»/doc/man/man1' make[5]: Entering directory '/«PKGBUILDDIR»/doc/man/man1' make[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/«PKGBUILDDIR»/debian/exonerate/usr/share/man/man1' /usr/bin/install -c -m 644 exonerate.1 ipcress.1 exonerate-server.1 fastautils.1 '/«PKGBUILDDIR»/debian/exonerate/usr/share/man/man1' make[5]: Leaving directory '/«PKGBUILDDIR»/doc/man/man1' make[4]: Leaving directory '/«PKGBUILDDIR»/doc/man/man1' make[4]: Entering directory '/«PKGBUILDDIR»/doc/man' make[5]: Entering directory '/«PKGBUILDDIR»/doc/man' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/«PKGBUILDDIR»/doc/man' make[4]: Leaving directory '/«PKGBUILDDIR»/doc/man' make[3]: Leaving directory '/«PKGBUILDDIR»/doc/man' make[3]: Entering directory '/«PKGBUILDDIR»/doc' make[4]: Entering directory '/«PKGBUILDDIR»/doc' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/doc' make[3]: Leaving directory '/«PKGBUILDDIR»/doc' make[2]: Leaving directory '/«PKGBUILDDIR»/doc' Making install in src make[2]: Entering directory '/«PKGBUILDDIR»/src' Making install in struct make[3]: Entering directory '/«PKGBUILDDIR»/src/struct' make[4]: Entering directory '/«PKGBUILDDIR»/src/struct' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/src/struct' make[3]: Leaving directory '/«PKGBUILDDIR»/src/struct' Making install in general make[3]: Entering directory '/«PKGBUILDDIR»/src/general' make[4]: Entering directory '/«PKGBUILDDIR»/src/general' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/src/general' make[3]: Leaving directory '/«PKGBUILDDIR»/src/general' Making install in sequence make[3]: Entering directory '/«PKGBUILDDIR»/src/sequence' make[4]: Entering directory '/«PKGBUILDDIR»/src/sequence' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/src/sequence' make[3]: Leaving directory '/«PKGBUILDDIR»/src/sequence' Making install in comparison make[3]: Entering directory '/«PKGBUILDDIR»/src/comparison' make[4]: Entering directory '/«PKGBUILDDIR»/src/comparison' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/src/comparison' make[3]: Leaving directory '/«PKGBUILDDIR»/src/comparison' Making install in database make[3]: Entering directory '/«PKGBUILDDIR»/src/database' make[4]: Entering directory '/«PKGBUILDDIR»/src/database' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/src/database' make[3]: Leaving directory '/«PKGBUILDDIR»/src/database' Making install in c4 make[3]: Entering directory '/«PKGBUILDDIR»/src/c4' make[4]: Entering directory '/«PKGBUILDDIR»/src/c4' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/src/c4' make[3]: Leaving directory '/«PKGBUILDDIR»/src/c4' Making install in bsdp make[3]: Entering directory '/«PKGBUILDDIR»/src/bsdp' make[4]: Entering directory '/«PKGBUILDDIR»/src/bsdp' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/src/bsdp' make[3]: Leaving directory '/«PKGBUILDDIR»/src/bsdp' Making install in sdp make[3]: Entering directory '/«PKGBUILDDIR»/src/sdp' make[4]: Entering directory '/«PKGBUILDDIR»/src/sdp' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/src/sdp' make[3]: Leaving directory '/«PKGBUILDDIR»/src/sdp' Making install in model make[3]: Entering directory '/«PKGBUILDDIR»/src/model' make[4]: Entering directory '/«PKGBUILDDIR»/src/model' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/src/model' make[3]: Leaving directory '/«PKGBUILDDIR»/src/model' Making install in hub make[3]: Entering directory '/«PKGBUILDDIR»/src/hub' make[4]: Entering directory '/«PKGBUILDDIR»/src/hub' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/src/hub' make[3]: Leaving directory '/«PKGBUILDDIR»/src/hub' Making install in program make[3]: Entering directory '/«PKGBUILDDIR»/src/program' make install-am make[4]: Entering directory '/«PKGBUILDDIR»/src/program' make[5]: Entering directory '/«PKGBUILDDIR»/src/program' /bin/mkdir -p '/«PKGBUILDDIR»/debian/exonerate/usr/bin' /usr/bin/install -c exonerate ipcress exonerate-server '/«PKGBUILDDIR»/debian/exonerate/usr/bin' make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/«PKGBUILDDIR»/src/program' make[4]: Leaving directory '/«PKGBUILDDIR»/src/program' make[3]: Leaving directory '/«PKGBUILDDIR»/src/program' Making install in util make[3]: Entering directory '/«PKGBUILDDIR»/src/util' make[4]: Entering directory '/«PKGBUILDDIR»/src/util' /bin/mkdir -p '/«PKGBUILDDIR»/debian/exonerate/usr/bin' /usr/bin/install -c fastaclean fastaclip fastachecksum fastacomposition fastadiff fastaexplode fastafetch fastahardmask fastaindex fastalength fastanrdb fastaoverlap fastareformat fastaremove fastarevcomp fastasoftmask fastasort fastasplit fastasubseq fastatranslate fastavalidcds fasta2esd fastaannotatecdna esd2esi '/«PKGBUILDDIR»/debian/exonerate/usr/bin' make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/src/util' make[3]: Leaving directory '/«PKGBUILDDIR»/src/util' make[3]: Entering directory '/«PKGBUILDDIR»/src' make[4]: Entering directory '/«PKGBUILDDIR»/src' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/src' make[3]: Leaving directory '/«PKGBUILDDIR»/src' make[2]: Leaving directory '/«PKGBUILDDIR»/src' Making install in test make[2]: Entering directory '/«PKGBUILDDIR»/test' Making install in data make[3]: Entering directory '/«PKGBUILDDIR»/test/data' Making install in cdna make[4]: Entering directory '/«PKGBUILDDIR»/test/data/cdna' make[5]: Entering directory '/«PKGBUILDDIR»/test/data/cdna' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/«PKGBUILDDIR»/test/data/cdna' make[4]: Leaving directory '/«PKGBUILDDIR»/test/data/cdna' Making install in protein make[4]: Entering directory '/«PKGBUILDDIR»/test/data/protein' make[5]: Entering directory '/«PKGBUILDDIR»/test/data/protein' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/«PKGBUILDDIR»/test/data/protein' make[4]: Leaving directory '/«PKGBUILDDIR»/test/data/protein' make[4]: Entering directory '/«PKGBUILDDIR»/test/data' make[5]: Entering directory '/«PKGBUILDDIR»/test/data' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/«PKGBUILDDIR»/test/data' make[4]: Leaving directory '/«PKGBUILDDIR»/test/data' make[3]: Leaving directory '/«PKGBUILDDIR»/test/data' Making install in exonerate make[3]: Entering directory '/«PKGBUILDDIR»/test/exonerate' make[4]: Entering directory '/«PKGBUILDDIR»/test/exonerate' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/test/exonerate' make[3]: Leaving directory '/«PKGBUILDDIR»/test/exonerate' Making install in ipcress make[3]: Entering directory '/«PKGBUILDDIR»/test/ipcress' make[4]: Entering directory '/«PKGBUILDDIR»/test/ipcress' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/test/ipcress' make[3]: Leaving directory '/«PKGBUILDDIR»/test/ipcress' Making install in util make[3]: Entering directory '/«PKGBUILDDIR»/test/util' make[4]: Entering directory '/«PKGBUILDDIR»/test/util' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/test/util' make[3]: Leaving directory '/«PKGBUILDDIR»/test/util' make[3]: Entering directory '/«PKGBUILDDIR»/test' make[4]: Entering directory '/«PKGBUILDDIR»/test' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/test' make[3]: Leaving directory '/«PKGBUILDDIR»/test' make[2]: Leaving directory '/«PKGBUILDDIR»/test' make[2]: Entering directory '/«PKGBUILDDIR»' make[3]: Entering directory '/«PKGBUILDDIR»' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/«PKGBUILDDIR»' make[2]: Leaving directory '/«PKGBUILDDIR»' make[1]: Leaving directory '/«PKGBUILDDIR»' dh_installdocs -a debian/rules override_dh_installchangelogs make[1]: Entering directory '/«PKGBUILDDIR»' dh_installchangelogs -k ChangeLog make[1]: Leaving directory '/«PKGBUILDDIR»' dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_strip -a dh_strip debug symbol extraction: enabling -a due to Build-Debug-Symbols: yes in /CurrentlyBuilding dh_strip debug symbol extraction: all non-arch-all packages for this build platform arm64: exonerate dh_strip debug symbol extraction: packages to act on: exonerate dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 dpkg-gencontrol: warning: -is is deprecated; it is without effect dpkg-gencontrol: warning: -ip is deprecated; it is without effect dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe /usr/bin/pkg_create_dbgsym: deferring build of .ddeb to dh_gencontrol dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/exonerate/usr/bin/fastalength debian/exonerate/usr/bin/fastahardmask debian/exonerate/usr/bin/fastadiff debian/exonerate/usr/bin/fastasplit debian/exonerate/usr/bin/fastafetch debian/exonerate/usr/bin/fastaclean debian/exonerate/usr/bin/fastasubseq debian/exonerate/usr/bin/fastareformat debian/exonerate/usr/bin/fastaoverlap debian/exonerate/usr/bin/fastanrdb debian/exonerate/usr/bin/fastacomposition debian/exonerate/usr/bin/fastaclip debian/exonerate/usr/bin/fastaremove debian/exonerate/usr/bin/fastaannotatecdna debian/exonerate/usr/bin/fastasoftmask debian/exonerate/usr/bin/fastachecksum debian/exonerate/usr/bin/exonerate debian/exonerate/usr/bin/ipcress debian/exonerate/usr/bin/fastavalidcds debian/exonerate/usr/bin/fastarevcomp debian/exonerate/usr/bin/fastaindex debian/exonerate/usr/bin/fasta2esd debian/exonerate/usr/bin/esd2esi debian/exonerate/usr/bin/exonerate-server debian/exonerate/usr/bin/fastasort debian/exonerate/usr/bin/fastatranslate debian/exonerate/usr/bin/fastaexplode were not linked against ld-linux-aarch64.so.1 (they use none of the library's symbols) dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_gencontrol debug symbol wrapper: all non-arch-all packages for this build platform arm64: exonerate dh_gencontrol debug symbol wrapper: packages to act on: exonerate dh_gencontrol debug symbol wrapper: ignored packages: dh_gencontrol debug symbol wrapper: processing package exonerate (pkgdir debian/exonerate, ddeb package dir debian/exonerate-dbgsym) dh_gencontrol debug symbol wrapper: building exonerate-dbgsym_2.2.0-7_arm64.ddeb dpkg-deb: building package 'exonerate-dbgsym' in '../exonerate-dbgsym_2.2.0-7_arm64.ddeb'. dh_gencontrol debug symbol wrapper: dpkg-distaddfile exonerate-dbgsym_2.2.0-7_arm64.ddeb science extra dpkg-distaddfile: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 128 pkgstriptranslations: processing exonerate (in debian/exonerate); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/exonerate/DEBIAN/control, package exonerate, directory debian/exonerate .. removing usr/share/doc/exonerate/changelog.gz pkgstripfiles: Running PNG optimization (using 4 cpus) for package exonerate ... pkgstripfiles: No PNG files. dpkg-deb: building package 'exonerate' in '../exonerate_2.2.0-7_arm64.deb'. dpkg-genchanges -B -mLaunchpad Build Daemon >../exonerate_2.2.0-7_arm64.changes dpkg-genchanges: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build exonerate-2.2.0 dpkg-buildpackage: binary-only upload (no source included) ──────────────────────────────────────────────────────────────────────────────── Build finished at 20160111-2340 Finished ──────── I: Built successfully ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build Chroot │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Changes │ └──────────────────────────────────────────────────────────────────────────────┘ exonerate_2.2.0-7_arm64.changes: ──────────────────────────────── Format: 1.8 Date: Mon, 11 Jan 2016 09:54:39 +0100 Source: exonerate Binary: exonerate Architecture: arm64 Version: 2.2.0-7 Distribution: xenial-proposed Urgency: low Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: exonerate - generic tool for pairwise sequence comparison Changes: exonerate (2.2.0-7) unstable; urgency=low . [ Charles Plessy ] * renamed debian/upstream-metadata.yaml to debian/upstream/metadata . [ Andreas Tille ] * debian/upstream/metadata: - Took over some detail from tasks file; moved DOI+PMID to References - Added eprint * debian/reference removed in favour of debian/upstream/metadata * debian/copyright: Deleted bouncing upstream contact address * fixed upstream homepage * fix watch file * do not maintain duplicated information in debian/upstream/metadata * cme fix dpkg-control * debhelper 9 * DEP5 * fix spelling and manpage syntax issues * remove outdated README.Debian Checksums-Sha1: 2920a76d26f7b594216c604bb9f4581b93d4df7a 2549196 exonerate-dbgsym_2.2.0-7_arm64.ddeb 688e111a2590c1984f76dbc215665b5fd1282e64 1238180 exonerate_2.2.0-7_arm64.deb Checksums-Sha256: 72caae4d86af5fb19bae86bc0c1b940125b06f121b5311634ddfd3fab5bbe6aa 2549196 exonerate-dbgsym_2.2.0-7_arm64.ddeb 71c4564c720e36377cbc9d197713dcf7a21522afefeb2843901caadb4c7b948a 1238180 exonerate_2.2.0-7_arm64.deb Files: 8d6cc034e3183f52b8bc2a85c6a24532 2549196 science extra exonerate-dbgsym_2.2.0-7_arm64.ddeb e7a6dd547d9a1ff03e60607f83ca68a9 1238180 science optional exonerate_2.2.0-7_arm64.deb ┌──────────────────────────────────────────────────────────────────────────────┐ │ Package contents │ └──────────────────────────────────────────────────────────────────────────────┘ exonerate_2.2.0-7_arm64.deb ─────────────────────────── new debian package, version 2.0. size 1238180 bytes: control archive=1991 bytes. 1210 bytes, 26 lines control 2227 bytes, 38 lines md5sums Package: exonerate Version: 2.2.0-7 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 7625 Depends: libc6 (>= 2.17), libglib2.0-0 (>= 2.24.0) Suggests: wise Enhances: bioperl-run Section: science Priority: optional Homepage: https://www.ebi.ac.uk/about/vertebrate-genomics/software/exonerate Description: generic tool for pairwise sequence comparison Exonerate allows you to align sequences using a many alignment models, using either exhaustive dynamic programming, or a variety of heuristics. Much of the functionality of the Wise dynamic programming suite was reimplemented in C for better efficiency. Exonerate is an intrinsic component of the building of the Ensembl genome databases, providing similarity scores between RNA and DNA sequences and thus determining splice variants and coding sequences in general. . An In-silico PCR Experiment Simulation System (see the ipcress man page) is packaged with exonerate. . This package also comes with a selection of utilities for performing simple manipulations quickly on fasta files beyond 2Gb drwxr-xr-x root/root 0 2016-01-11 23:39 ./ drwxr-xr-x root/root 0 2016-01-11 23:39 ./usr/ drwxr-xr-x root/root 0 2016-01-11 23:39 ./usr/bin/ -rwxr-xr-x root/root 192952 2016-01-11 23:39 ./usr/bin/esd2esi -rwxr-xr-x root/root 5223224 2016-01-11 23:39 ./usr/bin/exonerate -rwxr-xr-x root/root 205432 2016-01-11 23:39 ./usr/bin/exonerate-server -rwxr-xr-x root/root 92728 2016-01-11 23:39 ./usr/bin/fasta2esd -rwxr-xr-x root/root 84520 2016-01-11 23:39 ./usr/bin/fastaannotatecdna -rwxr-xr-x root/root 84512 2016-01-11 23:39 ./usr/bin/fastachecksum -rwxr-xr-x root/root 84512 2016-01-11 23:39 ./usr/bin/fastaclean -rwxr-xr-x root/root 84512 2016-01-11 23:39 ./usr/bin/fastaclip -rwxr-xr-x root/root 84512 2016-01-11 23:39 ./usr/bin/fastacomposition -rwxr-xr-x root/root 84512 2016-01-11 23:39 ./usr/bin/fastadiff -rwxr-xr-x root/root 84520 2016-01-11 23:39 ./usr/bin/fastaexplode -rwxr-xr-x root/root 84536 2016-01-11 23:39 ./usr/bin/fastafetch -rwxr-xr-x root/root 84512 2016-01-11 23:39 ./usr/bin/fastahardmask -rwxr-xr-x root/root 84512 2016-01-11 23:39 ./usr/bin/fastaindex -rwxr-xr-x root/root 84512 2016-01-11 23:39 ./usr/bin/fastalength -rwxr-xr-x root/root 84520 2016-01-11 23:39 ./usr/bin/fastanrdb -rwxr-xr-x root/root 84512 2016-01-11 23:39 ./usr/bin/fastaoverlap -rwxr-xr-x root/root 84512 2016-01-11 23:39 ./usr/bin/fastareformat -rwxr-xr-x root/root 84536 2016-01-11 23:39 ./usr/bin/fastaremove -rwxr-xr-x root/root 84512 2016-01-11 23:39 ./usr/bin/fastarevcomp -rwxr-xr-x root/root 84512 2016-01-11 23:39 ./usr/bin/fastasoftmask -rwxr-xr-x root/root 88608 2016-01-11 23:39 ./usr/bin/fastasort -rwxr-xr-x root/root 84536 2016-01-11 23:39 ./usr/bin/fastasplit -rwxr-xr-x root/root 84512 2016-01-11 23:39 ./usr/bin/fastasubseq -rwxr-xr-x root/root 84512 2016-01-11 23:39 ./usr/bin/fastatranslate -rwxr-xr-x root/root 84512 2016-01-11 23:39 ./usr/bin/fastavalidcds -rwxr-xr-x root/root 139672 2016-01-11 23:39 ./usr/bin/ipcress drwxr-xr-x root/root 0 2016-01-11 23:39 ./usr/share/ drwxr-xr-x root/root 0 2016-01-11 23:39 ./usr/share/doc/ drwxr-xr-x root/root 0 2016-01-11 23:40 ./usr/share/doc/exonerate/ -rw-r--r-- root/root 568 2008-07-10 11:35 ./usr/share/doc/exonerate/AUTHORS lrwxrwxrwx root/root 0 2016-01-11 23:39 ./usr/share/doc/exonerate/ChangeLog.gz -> changelog.gz -rw-r--r-- root/root 3603 2008-02-08 19:46 ./usr/share/doc/exonerate/README.gz -rw-r--r-- root/root 4001 2006-02-06 12:01 ./usr/share/doc/exonerate/TODO.gz -rw-r--r-- root/root 1993 2016-01-11 08:54 ./usr/share/doc/exonerate/changelog.Debian.gz -rw-r--r-- root/root 1615 2016-01-11 08:18 ./usr/share/doc/exonerate/copyright drwxr-xr-x root/root 0 2016-01-11 23:39 ./usr/share/man/ drwxr-xr-x root/root 0 2016-01-11 23:39 ./usr/share/man/man1/ -rw-r--r-- root/root 319 2016-01-11 23:39 ./usr/share/man/man1/esd2esi.1.gz lrwxrwxrwx root/root 0 2016-01-11 23:39 ./usr/share/man/man1/exonerate-client.1.gz -> fastaoverlap.1.gz -rw-r--r-- root/root 3893 2016-01-11 23:39 ./usr/share/man/man1/exonerate-server.1.gz -rw-r--r-- root/root 12466 2016-01-11 23:39 ./usr/share/man/man1/exonerate.1.gz lrwxrwxrwx root/root 0 2016-01-11 23:39 ./usr/share/man/man1/fasta2esd.1.gz -> fastaoverlap.1.gz lrwxrwxrwx root/root 0 2016-01-11 23:39 ./usr/share/man/man1/fastaannotatecdna.1.gz -> fastaoverlap.1.gz lrwxrwxrwx root/root 0 2016-01-11 23:39 ./usr/share/man/man1/fastachecksum.1.gz -> fastaoverlap.1.gz lrwxrwxrwx root/root 0 2016-01-11 23:39 ./usr/share/man/man1/fastaclean.1.gz -> fastaoverlap.1.gz lrwxrwxrwx root/root 0 2016-01-11 23:39 ./usr/share/man/man1/fastaclip.1.gz -> fastaoverlap.1.gz lrwxrwxrwx root/root 0 2016-01-11 23:39 ./usr/share/man/man1/fastacomposition.1.gz -> fastaoverlap.1.gz lrwxrwxrwx root/root 0 2016-01-11 23:39 ./usr/share/man/man1/fastadiff.1.gz -> fastaoverlap.1.gz lrwxrwxrwx root/root 0 2016-01-11 23:39 ./usr/share/man/man1/fastaexplode.1.gz -> fastaoverlap.1.gz lrwxrwxrwx root/root 0 2016-01-11 23:39 ./usr/share/man/man1/fastafetch.1.gz -> fastaoverlap.1.gz lrwxrwxrwx root/root 0 2016-01-11 23:39 ./usr/share/man/man1/fastahardmask.1.gz -> fastaoverlap.1.gz lrwxrwxrwx root/root 0 2016-01-11 23:39 ./usr/share/man/man1/fastaindex.1.gz -> fastaoverlap.1.gz lrwxrwxrwx root/root 0 2016-01-11 23:39 ./usr/share/man/man1/fastalength.1.gz -> fastaoverlap.1.gz lrwxrwxrwx root/root 0 2016-01-11 23:39 ./usr/share/man/man1/fastanrdb.1.gz -> fastaoverlap.1.gz -rw-r--r-- root/root 1025 2016-01-11 23:39 ./usr/share/man/man1/fastaoverlap.1.gz lrwxrwxrwx root/root 0 2016-01-11 23:39 ./usr/share/man/man1/fastareformat.1.gz -> fastaoverlap.1.gz lrwxrwxrwx root/root 0 2016-01-11 23:39 ./usr/share/man/man1/fastaremove.1.gz -> fastaoverlap.1.gz lrwxrwxrwx root/root 0 2016-01-11 23:39 ./usr/share/man/man1/fastarevcomp.1.gz -> fastaoverlap.1.gz lrwxrwxrwx root/root 0 2016-01-11 23:39 ./usr/share/man/man1/fastasoftmask.1.gz -> fastaoverlap.1.gz lrwxrwxrwx root/root 0 2016-01-11 23:39 ./usr/share/man/man1/fastasort.1.gz -> fastaoverlap.1.gz lrwxrwxrwx root/root 0 2016-01-11 23:39 ./usr/share/man/man1/fastasplit.1.gz -> fastaoverlap.1.gz lrwxrwxrwx root/root 0 2016-01-11 23:39 ./usr/share/man/man1/fastasubseq.1.gz -> fastaoverlap.1.gz lrwxrwxrwx root/root 0 2016-01-11 23:39 ./usr/share/man/man1/fastatranslate.1.gz -> fastaoverlap.1.gz -rw-r--r-- root/root 739 2016-01-11 23:39 ./usr/share/man/man1/fastautils.1.gz lrwxrwxrwx root/root 0 2016-01-11 23:39 ./usr/share/man/man1/fastavalidcds.1.gz -> fastaoverlap.1.gz -rw-r--r-- root/root 2569 2016-01-11 23:39 ./usr/share/man/man1/ipcress.1.gz ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Not removing build depends: as requested Keeping session: ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Build Architecture: arm64 Build-Space: 152756 Build-Time: 1594 Distribution: xenial-proposed Host Architecture: arm64 Install-Time: 20 Job: exonerate_2.2.0-7.dsc Machine Architecture: arm64 Package: exonerate Package-Time: 1616 Source-Version: 2.2.0-7 Space: 152756 Status: successful Version: 2.2.0-7 ──────────────────────────────────────────────────────────────────────────────── Finished at 20160111-2340 Build needed 00:26:56, 152756k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-8834663'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-8834663/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-8834663'] Unmounting chroot for build PACKAGEBUILD-8834663... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-8834663'] Removing build PACKAGEBUILD-8834663