estscan 3.0.3-5 source package in Ubuntu


estscan (3.0.3-5) unstable; urgency=medium

  * Team Upload.
  * Accommodate CFLAGS, CPPFLAGS and FFLAGS as envvars (for hardening).
  * Fuse Makefile-related patches to a single patch file.
  * Add "set -e" before a loop in debian/rules (Policy ยง4.6).
  * Skip dh_dwz on mipsel as a workaround for #972269.
    (Closes: #981684)

 -- Juhani Numminen <email address hidden>  Mon, 11 Jan 2021 15:55:48 +0200

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Debian Med
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Debian Med
Medium Urgency

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File Size SHA-256 Checksum
estscan_3.0.3-5.dsc 1.9 KiB 6cdf017f953246d5ff1f38654d9664de634409e15a87a1a26b36e715e39488a5
estscan_3.0.3.orig.tar.gz 45.3 KiB 037dc8770681ed12406a789ea292462a4ce5d89b0e906a1a3340aa4debc71e2f
estscan_3.0.3-5.debian.tar.xz 4.8 KiB 195929ef742168802c353d80e85be125023b935c501525c5e588f2d237029935

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Binary packages built by this source

estscan: ORF-independent detector of coding DNA sequences

 ESTScan is a program that can detect coding regions in DNA sequences,
 even if they are of low quality. ESTScan will also detect and correct
 sequencing errors that lead to frameshifts. ESTScan is not a gene
 prediction program , nor is it an open reading frame detector. In fact,
 its strength lies in the fact that it does not require an open reading
 frame to detect a coding region. As a result, the program may miss a
 few translated amino acids at either the N or the C terminus, but will
 detect coding regions with high selectivity and sensitivity.
 ESTScan takes advantages of the bias in hexanucleotide usage found in
 coding regions relative to non-coding regions. This bias is formalized
 as an inhomogeneous 3-periodic fifth-order Hidden Markov Model
 (HMM). Additionally, the HMM of ESTScan has been extended to allows
 insertions and deletions when these improve the coding region statistics.

estscan-dbgsym: debug symbols for estscan