Ubuntu
ecopcr package

ecopcr 1.0.1+dfsg-5 source package in Ubuntu

Changelog

ecopcr (1.0.1+dfsg-5) unstable; urgency=medium

  * d/control: add myself to uploaders.
  * d/control: declare compliance to standards version 4.7.0.
  * gcc-14.patch: new: fix build failure with Gcc 14. (Closes: #1074930)

 -- Étienne Mollier <email address hidden>  Sat, 13 Jul 2024 19:16:09 +0200

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Oracular release universe misc

Downloads

File Size SHA-256 Checksum
ecopcr_1.0.1+dfsg-5.dsc 2.1 KiB d25aa911fedf28c28ace049bc041cf727dfeffef8c451a3865146204aa23e4ed
ecopcr_1.0.1+dfsg.orig.tar.xz 23.7 MiB 90e3027e465f1a05a8204b41cff48b5a7fbc00d8e0dce71602698e7abd1baeda
ecopcr_1.0.1+dfsg-5.debian.tar.xz 16.1 KiB a4e037736ec6b94f787661063a70bc379b0f910e38ab89cde35c234f8ce17e93

Available diffs

No changes file available.

Binary packages built by this source

ecopcr: estimate PCR barcode primers quality

 DNA barcoding is a tool for characterizing the species origin using a
 short sequence from a standard position and agreed upon position in the
 genome. To be used as a DNA barcode, a genome locus should vary among
 individuals of the same species only to a minor degree and it should
 vary among species very quickly. From a practical point of view, a
 barcode locus should be flanked by two conserved regions to design PCR
 primers. Several manually discovered barcode loci like COI, rbcL, 18S,
 16S and 23S rDNA, or trnH-ps are routinely used today, but no objective
 function has been described to measure their quality in terms of
 universality (barcode coverage, Bc ) or in terms of taxonomical
 discrimination capacity (barcode specificity, Bs ).
 .
 ecoPCR is an electronic PCR software developed by LECA and
 Helix-Project. It helps to estimate Barcode primers quality. In
 conjunction with OBITools you can postprocess ecoPCR output to compute
 barcode coverage and barcode specificity. New barcode primers can be
 developed using the ecoPrimers software

ecopcr-dbgsym: debug symbols for ecopcr