ea-utils 1.1.2+dfsg-6 source package in Ubuntu


ea-utils (1.1.2+dfsg-6) unstable; urgency=medium

  [ Jelmer Vernooń≥ ]
  * Use secure copyright file specification URI.

  [ Andreas Tille ]
  * For the moment do not fetch the new version which is very different
  * Standards-Version: 4.5.1 (routine-update)
  * debhelper-compat 13 (routine-update)
  * Add salsa-ci file (routine-update)
  * Rules-Requires-Root: no (routine-update)
  * Set upstream metadata fields: Bug-Database, Bug-Submit.

 -- Andreas Tille <email address hidden>  Fri, 11 Dec 2020 21:49:12 +0100

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Debian Med
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Debian Med
Medium Urgency

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Series Pocket Published Component Section
Impish release universe misc
Hirsute release universe misc


File Size SHA-256 Checksum
ea-utils_1.1.2+dfsg-6.dsc 2.0 KiB 1b9adc72940f5e66af833f9593abd9bb1214a3bb051eaac340a648d00afa65ee
ea-utils_1.1.2+dfsg.orig.tar.xz 133.6 KiB d19298532ba694a09b194c208d647c7ddd94d79f1cf461431df6c6f4ffd9f93f
ea-utils_1.1.2+dfsg-6.debian.tar.xz 12.4 KiB fffca7fcb1c30d74e7cd25ef41bd2d94e547c5d8d606bcd20a7a3b19f4076ffb

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Binary packages built by this source

ea-utils: command-line tools for processing biological sequencing data

 Ea-utils provides a set of command-line tools for processing biological
 sequencing data, barcode demultiplexing, adapter trimming, etc.
 Primarily written to support an Illumina based pipeline - but should work with
 any FASTQs.
 Main Tools are:
  * fastq-mcf
 Scans a sequence file for adapters, and, based on a log-scaled threshold,
 determines a set of clipping parameters and performs clipping. Also does
 skewing detection and quality filtering.
  * fastq-multx
 Demultiplexes a fastq. Capable of auto-determining barcode id's based on a
 master set fields. Keeps multiple reads in-sync during demultiplexing. Can
 verify that the reads are in-sync as well, and fail if they're not.
  * fastq-join
 Similar to audy's stitch program, but in C, more efficient and supports some
 automatic benchmarking and tuning. It uses the same "squared distance for
 anchored alignment" as other tools.
  * varcall
 Takes a pileup and calculates variants in a more easily parameterized manner
 than some other tools.

ea-utils-dbgsym: debug symbols for ea-utils