ea-utils 1.1.2+dfsg-5build1 source package in Ubuntu


ea-utils (1.1.2+dfsg-5build1) focal; urgency=medium

  * No-change rebuild for libgcc-s1 package name change.

 -- Matthias Klose <email address hidden>  Sun, 22 Mar 2020 16:38:48 +0100

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Matthias Klose
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Debian Med
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ea-utils_1.1.2+dfsg.orig.tar.xz 133.6 KiB d19298532ba694a09b194c208d647c7ddd94d79f1cf461431df6c6f4ffd9f93f
ea-utils_1.1.2+dfsg-5build1.debian.tar.xz 12.2 KiB a94b8208d8576f1b2aa2f19ae53d446ceb3e6bd4d606124d2506e30bcd1ad10f
ea-utils_1.1.2+dfsg-5build1.dsc 2.1 KiB 1c8c3cdbe4a050e0e5458af4c0d0b5bcb484bfd708e76aec7557ef2f60fae02c

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Binary packages built by this source

ea-utils: command-line tools for processing biological sequencing data

 Ea-utils provides a set of command-line tools for processing biological
 sequencing data, barcode demultiplexing, adapter trimming, etc.
 Primarily written to support an Illumina based pipeline - but should work with
 any FASTQs.
 Main Tools are:
  * fastq-mcf
 Scans a sequence file for adapters, and, based on a log-scaled threshold,
 determines a set of clipping parameters and performs clipping. Also does
 skewing detection and quality filtering.
  * fastq-multx
 Demultiplexes a fastq. Capable of auto-determining barcode id's based on a
 master set fields. Keeps multiple reads in-sync during demultiplexing. Can
 verify that the reads are in-sync as well, and fail if they're not.
  * fastq-join
 Similar to audy's stitch program, but in C, more efficient and supports some
 automatic benchmarking and tuning. It uses the same "squared distance for
 anchored alignment" as other tools.
  * varcall
 Takes a pileup and calculates variants in a more easily parameterized manner
 than some other tools.

ea-utils-dbgsym: debug symbols for ea-utils