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ea-utils package

ea-utils 1.1.2+dfsg-5 source package in Ubuntu

Changelog

ea-utils (1.1.2+dfsg-5) unstable; urgency=medium

  [ Andreas Tille ]
  * Point watch file to github since upstream is now tagging releases
  * Build-Depends: r-cran-hmisc to enable testing migration since
    this Dependency does not exist on all architectures
  * Standards-Version: 4.1.4
  * Point Vcs-fields to Salsa
  * debhelper 11
  * do not parse d/changelog

  [ Steffen Moeller ]
  * d/u/metadata:
    - added RRIDs
    - yamllint clean

 -- Andreas Tille <email address hidden>  Thu, 26 Apr 2018 23:24:49 +0200

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section

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File Size SHA-256 Checksum
ea-utils_1.1.2+dfsg-5.dsc 2.0 KiB 655d0183c32b512bbd9dd60a4be60fbfd496f9b140a7141ae61601313a4825c3
ea-utils_1.1.2+dfsg.orig.tar.xz 133.6 KiB d19298532ba694a09b194c208d647c7ddd94d79f1cf461431df6c6f4ffd9f93f
ea-utils_1.1.2+dfsg-5.debian.tar.xz 12.1 KiB 03ce09139b5318358258963670a429a51da94da762bd9767d0b59c32bfce2454

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Binary packages built by this source

ea-utils: command-line tools for processing biological sequencing data

 Ea-utils provides a set of command-line tools for processing biological
 sequencing data, barcode demultiplexing, adapter trimming, etc.
 .
 Primarily written to support an Illumina based pipeline - but should work with
 any FASTQs.
 .
 Main Tools are:
 .
  * fastq-mcf
 Scans a sequence file for adapters, and, based on a log-scaled threshold,
 determines a set of clipping parameters and performs clipping. Also does
 skewing detection and quality filtering.
  * fastq-multx
 Demultiplexes a fastq. Capable of auto-determining barcode id's based on a
 master set fields. Keeps multiple reads in-sync during demultiplexing. Can
 verify that the reads are in-sync as well, and fail if they're not.
  * fastq-join
 Similar to audy's stitch program, but in C, more efficient and supports some
 automatic benchmarking and tuning. It uses the same "squared distance for
 anchored alignment" as other tools.
  * varcall
 Takes a pileup and calculates variants in a more easily parameterized manner
 than some other tools.

ea-utils-dbgsym: debug symbols for ea-utils