e-mem 1.0.1-4 source package in Ubuntu


e-mem (1.0.1-4) unstable; urgency=medium

  [ Helmut Grohne ]
  * add cross.patch, fix FTCBFS.  (Closes: #976876)

  [ √Čtienne Mollier ]
  * add cppflags.patch, fix blhc warnings.
  * mark remove_unused_mpopcnt_option.patch forwarding not needed.
  * add myself to uploaders.

 -- √Čtienne Mollier <email address hidden>  Wed, 09 Dec 2020 18:27:36 +0100

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Uploaded by:
Debian Med
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Original maintainer:
Debian Med
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Impish release universe misc
Hirsute release universe misc


File Size SHA-256 Checksum
e-mem_1.0.1-4.dsc 1.9 KiB 4c2ed21e1bbd7c03bf29d149aa7ae63ecf11c88def91410c9970355ba538992e
e-mem_1.0.1.orig.tar.gz 33.0 KiB 70a5a1e8b4e190d117b8629fff3493a4762708c8c0fe9eae84da918136ceafea
e-mem_1.0.1-4.debian.tar.xz 5.6 KiB 405f49d23e19ff8edac2f7207308e231bc6213f4793264e75cacfb15db07cc4e

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Binary packages built by this source

e-mem: Efficient computation of Maximal Exact Matches for very large genomes

 E-MEM enables efficient computation of Maximal Exact Matches (MEMs) that
 does not use full text indexes. The algorithm uses much less space and
 is highly amenable to parallelization. It can compute all MEMs of
 minimum length 100 between the whole human and mouse genomes on a 12
 core machine in 10 min and 2 GB of memory; the required memory can be as
 low as 600 MB. It can run efficiently genomes of any size. Extensive
 testing and comparison with currently best algorithms is provided.
 Mummer has many different scripts where one of the key program is MEM
 computation. In all the scripts, the MEM computation program can be
 replaced with e-mem with ease for better performance.

e-mem-dbgsym: debug symbols for e-mem