e-mem 1.0.1-1 source package in Ubuntu


e-mem (1.0.1-1) unstable; urgency=medium

  * New upstream version
  * Standards-Version: 4.1.3
  * debhelper 11

 -- Andreas Tille <email address hidden>  Thu, 15 Feb 2018 16:45:11 +0100

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Debian Med
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Debian Med
Medium Urgency

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Series Pocket Published Component Section
Bionic release universe misc


File Size SHA-256 Checksum
e-mem_1.0.1-1.dsc 1.9 KiB bc8a3b17e0128fcf9d68e66bdadf9971f0348eed2eee078a11aade46cdeafb84
e-mem_1.0.1.orig.tar.gz 33.0 KiB 70a5a1e8b4e190d117b8629fff3493a4762708c8c0fe9eae84da918136ceafea
e-mem_1.0.1-1.debian.tar.xz 4.7 KiB 52a54e0934999b64206bad1e11f62f4aafc1f53c6691bdbab3bf152801d68f21

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Binary packages built by this source

e-mem: Efficient computation of Maximal Exact Matches for very large genomes

 E-MEM enables efficient computation of Maximal Exact Matches (MEMs) that
 does not use full text indexes. The algorithm uses much less space and
 is highly amenable to parallelization. It can compute all MEMs of
 minimum length 100 between the whole human and mouse genomes on a 12
 core machine in 10 min and 2 GB of memory; the required memory can be as
 low as 600 MB. It can run efficiently genomes of any size. Extensive
 testing and comparison with currently best algorithms is provided.
 Mummer has many different scripts where one of the key program is MEM
 computation. In all the scripts, the MEM computation program can be
 replaced with e-mem with ease for better performance.

e-mem-dbgsym: debug symbols for e-mem